Table showing results for June 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5LMT	4079	2021-06-05	2016-08-01	4.15	4.33	4.20	4.2	0.008	1.43	21.0	0.12	20.73	0.01	1.290	18.60	22.35	11.9	84.8	3.3	-2.73	0.77	0.76	—	4.1	0.006	0.82	0.0	0.04	16.83	0.01	1.834	32.80	0.00	9.9	89.8	0.4	-1.73	0.98	0.80	0.84	—	55776	2622	31	1612	88	0	0	logfile
✔	6BGJ	7096	2021-06-01	2017-10-28	3.8	3.68	3.27	3.6	0.008	1.21	0.0	0.06	10.72	0.01	2.142	10.48	0.00	13.7	85.7	0.6	-5.82	0.47	0.59	1.68	3.6	0.004	0.89	0.0	0.05	14.18	0.01	2.046	16.35	0.41	11.8	88.1	0.1	-0.87	1.46	0.50	0.60	1.51	7418	980	4	0	2	0	0	logfile
✔	5VN3	8713	2021-06-03	2017-04-28	3.7	3.93	3.74	3.8	0.009	1.13	0.0	0.06	9.18	0.01	2.235	6.27	0.12	10.8	88.8	0.4	-5.03	0.73	0.79	2.37	3.8	0.004	0.68	0.0	0.04	13.92	0.00	2.212	9.32	0.12	6.3	93.5	0.2	-1.49	0.76	0.74	0.82	1.67	23727	2814	21	0	129	0	0	logfile
✔	6SH3	10192	2021-06-03	2019-08-05	3.4	3.55	—	3.5	0.006	0.91	0.0	0.05	13.40	0.01	2.287	3.59	0.62	6.5	93.5	0.0	-3.29	0.70	0.80	2.63	3.5	0.004	0.67	0.0	0.04	15.66	0.01	2.225	5.71	0.53	5.6	94.4	0.0	-0.58	2.18	0.71	0.82	2.67	21021	2632	14	0	7	0	0	logfile
✔	6B7N	7063	2021-06-03	2017-10-04	3.3	4.06	—	3.6	0.008	1.11	0.0	0.07	10.65	0.01	2.171	5.41	0.78	12.1	87.5	0.4	-4.33	0.88	0.85	2.77	3.6	0.003	0.68	0.0	0.04	12.36	0.00	2.123	11.09	0.17	11.0	88.6	0.4	-1.42	0.50	0.88	0.86	2.46	22215	2898	6	0	57	0	0	logfile
✔	6NUR	0520	2021-06-01	2019-02-01	3.1	3.25	3.17	3.3	0.016	1.56	0.0	0.09	10.59	0.01	2.270	2.22	0.52	1.4	98.6	0.0	-0.12	0.64	0.81	4.19	3.3	0.002	0.60	0.0	0.04	14.73	0.00	2.178	6.36	0.31	2.0	98.0	0.0	0.64	0.78	0.59	0.82	3.03	8647	1087	5	0	2	0	0	logfile
✔	5VN8	8717	2021-06-03	2017-04-28	3.6	3.72	3.44	3.6	0.006	1.09	0.0	0.06	8.54	0.01	2.246	5.49	0.00	12.4	86.9	0.6	-4.89	0.72	0.77	1.93	3.6	0.003	0.69	0.0	0.05	14.45	0.00	2.179	10.46	0.33	9.0	90.9	0.1	-2.20	0.85	0.74	0.80	1.67	20589	2427	18	0	114	0	0	logfile
✔	6iFZ	9659	2021-06-02	2018-09-21	3.58	3.57	—	3.5	0.008	1.15	2.0	0.07	16.35	0.01	1.258	12.58	0.96	10.7	88.8	0.5	-5.16	0.72	0.80	2.37	3.5	0.007	0.83	0.0	0.05	17.58	0.01	1.972	16.00	1.07	10.3	89.6	0.1	-2.18	1.66	0.73	0.80	2.13	19185	2254	11	62	1	0	0	logfile
✔	6CMX	7526	2021-06-02	2018-03-06	3.1	3.31	—	3.3	0.008	1.00	0.0	0.14	13.02	0.01	1.638	21.12	1.51	9.6	90.2	0.2	-3.85	0.72	0.76	3.77	3.3	0.004	0.72	0.0	0.05	16.24	0.00	2.098	12.66	0.40	9.3	90.7	0.0	-2.17	0.73	0.75	0.79	3.00	10139	1300	1	0	17	0	0	logfile
✔	6QWL	4660	2021-06-02	2019-03-05	4.1	4.22	—	4.1	0.008	1.01	0.0	0.06	16.06	0.01	2.214	10.07	0.93	10.8	89.1	0.1	-4.69	0.75	0.74	—	4.1	0.004	0.73	0.0	0.04	15.23	0.01	2.074	17.42	0.09	9.1	90.9	0.0	-1.70	2.49	0.76	0.75	—	10408	1244	5	26	0	0	0	logfile
✔	6E1K	8956	2021-06-02	2018-07-10	3.3	3.68	3.47	3.7	0.019	1.74	1.0	0.08	13.56	0.01	2.047	10.32	1.50	11.4	88.3	0.3	-6.12	0.53	0.67	3.36	3.7	0.003	0.71	0.0	0.04	14.45	0.00	2.077	11.54	0.83	5.4	94.6	0.0	-1.94	0.80	0.61	0.73	1.72	11641	1450	10	0	21	2	0	logfile
✔	6BCL	7082	2021-06-04	2017-10-20	3.54	3.64	—	3.6	0.008	0.96	0.0	0.05	9.61	0.01	2.324	3.07	0.38	5.8	94.2	0.0	-4.83	0.63	0.80	2.42	3.6	0.004	0.68	0.0	0.04	14.04	0.00	2.157	6.51	0.53	4.9	95.1	0.0	1.35	0.90	0.65	0.81	1.94	30474	3868	5	0	2	0	0	logfile
✔	6BCJ	7081	2021-06-03	2017-10-20	3.14	3.22	—	3.2	0.008	0.97	0.0	0.05	9.60	0.01	2.301	2.65	0.38	5.9	94.1	0.0	-4.83	0.68	0.84	3.10	3.2	0.004	0.63	0.0	0.04	14.16	0.00	2.181	6.89	0.22	5.6	94.4	0.0	1.13	0.75	0.71	0.85	1.97	29868	3744	9	0	4	8	0	logfile
✔	6BCo	7083	2021-06-04	2017-10-20	2.88	2.96	—	3.0	0.007	0.98	0.0	0.05	9.77	0.01	2.286	3.71	0.37	5.8	94.2	0.0	-4.72	0.67	0.82	3.73	2.9	0.004	0.61	0.0	0.04	15.01	0.00	2.164	6.67	1.60	4.6	95.4	0.0	1.14	1.28	0.67	0.85	2.60	30432	3808	8	0	4	0	0	logfile
✔	5LMR	4077	2021-06-05	2016-08-01	4.45	4.71	4.60	4.4	0.008	1.39	20.0	0.12	20.50	0.01	1.426	17.85	16.73	8.7	88.5	2.8	-2.16	0.79	0.74	—	4.4	0.004	0.76	0.0	0.04	16.79	0.01	1.981	33.36	0.05	9.1	90.4	0.5	-1.75	1.66	0.84	0.85	—	55662	2628	29	1609	4	0	0	logfile
✔	6BCQ	7085	2021-06-04	2017-10-20	3.25	3.34	—	3.3	0.007	1.00	0.0	0.05	9.82	0.01	2.318	3.48	0.25	5.5	94.5	0.0	-4.85	0.64	0.80	3.09	3.3	0.005	0.71	0.0	0.04	14.91	0.01	2.202	8.17	0.31	4.7	95.3	0.0	1.29	0.88	0.64	0.82	1.78	31048	3932	8	0	4	0	0	logfile
✔	5LMo	4074	2021-06-05	2016-08-01	4.3	4.71	4.30	4.3	0.009	1.47	50.0	0.12	20.86	0.01	0.865	18.37	20.40	10.6	85.8	3.6	-2.76	0.80	0.69	—	4.3	0.005	0.79	0.0	0.04	16.88	0.01	1.101	37.73	0.00	9.5	89.9	0.6	-1.70	2.22	0.87	0.84	—	54110	2622	29	1533	110	0	0	logfile
✔	6BX0	7301	2021-06-12	2017-12-15	3.79	4.07	—	4.0	0.010	1.28	180.0	0.08	11.39	0.01	1.342	41.95	2.59	4.5	95.3	0.2	-3.37	0.53	0.67	3.05	4.0	0.005	0.98	0.0	0.05	16.77	0.01	2.002	22.88	1.31	9.2	90.8	0.0	-2.51	4.49	0.63	0.79	2.44	259560	32100	60	0	0	0	0	logfile
✔	6RZB	10061	2021-06-01	2019-06-13	4.1	4.19	3.09	4.2	0.042	2.28	5.0	0.16	17.69	0.01	2.096	9.24	5.37	4.2	95.5	0.3	-2.81	0.68	0.84	—	4.1	0.011	1.43	0.0	0.06	15.64	0.01	1.194	53.01	0.00	4.6	95.4	0.0	-2.25	0.87	0.67	0.81	—	8001	1001	5	1	3	0	0	logfile
✔	6N58	0349	2021-06-04	2018-11-21	3.78	3.90	—	3.9	0.018	1.23	0.0	0.08	10.65	0.01	1.892	38.27	0.37	14.7	84.9	0.4	-4.74	0.73	0.82	2.09	3.9	0.006	0.79	0.0	0.05	15.89	0.00	2.156	14.88	0.55	9.2	90.6	0.1	-1.48	3.02	0.73	0.82	1.42	30189	3833	11	0	8	0	0	logfile

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