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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5WEL | 8820 | 2022-05-15 | 2017-07-10 | 4.4 | 4.52 | — | 4.4 | 0.020 | 0.96 | 0.0 | 0.06 | 12.16 | 0.01 | 2.206 | 8.23 | 0.61 | 6.5 | 93.4 | 0.1 | -4.07 | 0.69 | 0.68 | — | 4.4 | 0.003 | 0.72 | 0.0 | 0.04 | 13.09 | 0.00 | 2.103 | 18.91 | 0.00 | 5.4 | 94.6 | 0.0 | -0.68 | 1.15 | 0.75 | 0.78 | — | 27638 | 3484 | 8 | 0 | 6 | 0 | 0 | logfile |
✔ | 6FQ8 | 4299 | 2022-05-13 | 2018-02-13 | 4.8 | 6.62 | — | 4.8 | 0.008 | 1.16 | 0.0 | 0.07 | 26.99 | 0.01 | 2.252 | 8.50 | 0.16 | 2.3 | 97.7 | 0.0 | -0.86 | 0.84 | 0.71 | — | 4.9 | 0.005 | 0.74 | 0.0 | 0.04 | 30.16 | 0.01 | 1.999 | 26.10 | 0.00 | 3.7 | 96.3 | 0.0 | 0.60 | 0.92 | 0.86 | 0.76 | — | 11913 | 744 | 10 | 294 | 0 | 0 | 0 | logfile |
✔ | 6DV6 | 8915 | 2022-05-17 | 2018-06-22 | 3.9 | 4.12 | — | 4.2 | 0.010 | 1.32 | 0.0 | 0.07 | 14.14 | 0.01 | 1.835 | 8.19 | 7.64 | 6.5 | 93.5 | 0.0 | -4.93 | 0.71 | 0.80 | 1.58 | 4.2 | 0.004 | 0.84 | 0.0 | 0.05 | 16.03 | 0.01 | 2.076 | 11.10 | 0.91 | 4.6 | 95.4 | 0.0 | -2.05 | 1.89 | 0.65 | 0.85 | 1.36 | 40950 | 5370 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N07 | 9312 | 2022-05-16 | 2018-11-06 | 3.6 | 3.73 | — | 3.7 | 0.007 | 0.77 | 0.0 | 0.05 | 9.00 | 0.01 | 2.330 | 5.07 | 0.06 | 2.3 | 97.7 | 0.0 | -3.72 | 0.78 | 0.86 | 3.84 | 3.7 | 0.005 | 0.70 | 0.0 | 0.05 | 14.93 | 0.00 | 2.118 | 13.51 | 0.53 | 2.1 | 97.9 | 0.0 | 0.04 | 2.18 | 0.79 | 0.86 | 2.80 | 32833 | 4523 | 42 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PEV | 20333 | 2022-05-18 | 2019-06-21 | 3.2 | 3.28 | — | 3.3 | 0.008 | 0.99 | 0.0 | 0.06 | 16.57 | 0.01 | 2.103 | 6.84 | 1.84 | 4.9 | 94.9 | 0.2 | -4.14 | 0.78 | 0.83 | 3.46 | 3.2 | 0.003 | 0.65 | 0.0 | 0.04 | 16.86 | 0.00 | 1.977 | 12.67 | 0.23 | 4.0 | 96.0 | 0.0 | -0.34 | 1.17 | 0.77 | 0.86 | 3.45 | 46368 | 5736 | 24 | 0 | 24 | 0 | 0 | logfile |
✘ | 6TM5 | 10518 | 2022-05-13 | 2019-12-03 | 3.9 | 4.07 | — | 4.1 | 0.010 | 1.11 | 0.0 | 0.05 | 15.92 | 0.01 | 1.619 | 28.92 | 0.76 | 11.9 | 87.8 | 0.3 | -4.46 | 0.36 | 0.48 | 0.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 63885 | 8117 | 23 | 0 | 3 | 0 | 0 | logfile |
✘ | 6EF0 | 9042 | 2022-05-15 | 2018-08-15 | 4.43 | 3.84 | — | 4.1 | 0.011 | 1.07 | 0.0 | 0.06 | 12.59 | 0.01 | 2.089 | 8.62 | 0.00 | 16.8 | 83.2 | 0.0 | -5.24 | 0.62 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24748 | 3318 | 20 | 0 | 6 | 0 | 0 | logfile |
✔ | 6SCJ | 10141 | 2022-05-17 | 2019-07-24 | 3.6 | 3.92 | — | 3.8 | 0.004 | 0.98 | 0.0 | 0.06 | 10.84 | 0.01 | 2.235 | 4.92 | 0.14 | 13.3 | 86.6 | 0.1 | -4.97 | 0.78 | 0.76 | 1.82 | 3.8 | 0.003 | 0.75 | 0.0 | 0.04 | 14.11 | 0.01 | 2.036 | 11.28 | 0.37 | 10.5 | 89.5 | 0.0 | -2.15 | 1.25 | 0.79 | 0.78 | 1.38 | 39884 | 5102 | 4 | 0 | 36 | 0 | 0 | logfile |
✔ | 3JA7 | 6324 | 2022-05-17 | 2015-04-21 | 3.6 | 3.71 | — | 3.7 | 0.010 | 1.53 | 0.0 | 0.06 | 15.94 | 0.01 | 1.528 | 38.36 | 10.44 | 11.0 | 86.8 | 2.1 | -4.92 | 0.77 | 0.82 | 1.86 | 3.7 | 0.004 | 0.81 | 0.0 | 0.04 | 16.12 | 0.01 | 2.228 | 10.40 | 0.46 | 5.2 | 94.1 | 0.7 | -1.18 | 1.71 | 0.77 | 0.81 | 1.44 | 41280 | 5136 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 5WQ9 | 6677 | 2022-05-12 | 2016-11-23 | 4.22 | 4.37 | — | 4.2 | 0.009 | 1.22 | 15.0 | 0.07 | 11.97 | 0.01 | 1.501 | 38.54 | 2.89 | 4.4 | 95.4 | 0.2 | -2.32 | 0.78 | 0.68 | — | 4.2 | 0.003 | 0.74 | 0.0 | 0.05 | 12.94 | 0.00 | 2.122 | 13.79 | 0.08 | 3.6 | 96.4 | 0.0 | 0.29 | 2.31 | 0.85 | 0.83 | — | 56340 | 7395 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 6QJM | 4564 | 2022-05-12 | 2019-01-24 | 3.3 | 3.49 | 1.95 | 3.4 | 0.010 | 1.01 | 0.0 | 0.07 | 8.06 | 0.01 | 2.408 | 6.17 | 0.00 | 9.1 | 90.9 | 0.0 | -2.36 | 0.38 | 0.76 | 3.31 | 3.5 | 0.003 | 0.58 | 0.0 | 0.06 | 13.83 | 0.00 | 2.178 | 4.49 | 0.00 | 5.1 | 94.9 | 0.0 | -2.27 | 1.60 | 0.34 | 0.74 | 3.53 | 846 | 111 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6CAJ | 7442 | 2022-05-15 | 2018-01-31 | 2.8 | 2.84 | — | 4.2 | 0.008 | 0.88 | 0.0 | 0.17 | 9.84 | 0.01 | 1.467 | 5.96 | 0.24 | 4.5 | 95.5 | 0.0 | -3.63 | 0.33 | 0.15 | 2.28 | 2.9 | 0.011 | 1.12 | 2.0 | 0.04 | 15.91 | 0.00 | 1.756 | 14.31 | 2.92 | 4.3 | 95.7 | 0.0 | -0.61 | 0.75 | 0.75 | 0.82 | 2.85 | 24295 | 3210 | 11 | 0 | 1 | 0 | 0 | logfile |
✔ | 6QJP | 4565 | 2022-05-12 | 2019-01-24 | 3.5 | 3.64 | 2.32 | 4.1 | 0.009 | 1.01 | 0.0 | 0.07 | 9.52 | 0.01 | 2.605 | 1.16 | 0.00 | 3.2 | 96.8 | 0.0 | -2.50 | 0.37 | 0.74 | 3.05 | 4.2 | 0.003 | 0.70 | 0.0 | 0.05 | 12.40 | 0.00 | 2.347 | 10.42 | 0.00 | 1.1 | 98.9 | 0.0 | -3.47 | 1.59 | 0.32 | 0.72 | 4.10 | 816 | 105 | 3 | 0 | 0 | 0 | 0 | logfile |
✘ | 6N06 | 9311 | 2022-05-15 | 2018-11-06 | 3.4 | 3.49 | — | 3.5 | 0.005 | 0.74 | 0.0 | 0.05 | 8.24 | 0.01 | 2.241 | 7.24 | 0.04 | 1.9 | 98.1 | 0.0 | -4.01 | 0.76 | 0.86 | 3.99 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28197 | 3915 | 39 | 0 | 0 | 0 | 0 | logfile |
✘ | 6C0W | 7326 | 2022-05-13 | 2018-01-02 | 4.0 | 4.10 | 3.87 | 4.0 | 0.006 | 0.81 | 0.0 | 0.05 | 27.80 | 0.01 | 2.107 | 4.30 | 0.00 | 4.9 | 95.1 | 0.0 | -4.19 | 0.80 | 0.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13122 | 925 | 11 | 278 | 0 | 0 | 0 | logfile |
✘ | 6Jo5 | 9853 | 2022-05-18 | 2019-03-20 | 2.9 | 2.97 | — | 2.9 | 0.028 | 2.73 | 0.0 | 0.09 | 18.14 | 0.02 | 1.209 | 12.17 | 0.43 | 4.0 | 96.0 | 0.1 | -2.29 | 0.79 | 0.84 | 3.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 48476 | 4170 | 40 | 0 | 313 | 0 | 0 | logfile |
✔ | 6NMC | 0446 | 2022-05-13 | 2019-01-10 | 4.24 | 4.55 | — | 4.2 | 0.014 | 1.16 | 6.0 | 0.07 | 16.40 | 0.01 | 2.015 | 20.07 | 2.45 | 10.2 | 89.4 | 0.4 | -4.23 | 0.86 | 0.76 | — | 4.2 | 0.007 | 0.85 | 0.0 | 0.05 | 14.43 | 0.00 | 1.809 | 27.33 | 0.07 | 9.6 | 90.4 | 0.0 | -1.43 | 1.84 | 0.90 | 0.85 | — | 12808 | 1480 | 8 | 25 | 2 | 6 | 0 | logfile |
✔ | 6HiZ | 0233 | 2022-05-15 | 2018-08-31 | 3.08 | 3.20 | 3.05 | 3.1 | 0.009 | 1.39 | 0.0 | 0.06 | 18.06 | 0.01 | 1.866 | 11.28 | 12.80 | 3.2 | 96.7 | 0.1 | -2.90 | 0.89 | 0.91 | 2.63 | 3.1 | 0.002 | 0.56 | 0.0 | 0.04 | 16.90 | 0.00 | 1.966 | 8.31 | 0.20 | 3.2 | 96.7 | 0.0 | 1.36 | 0.78 | 0.87 | 0.89 | 2.58 | 76845 | 9056 | 33 | 143 | 19 | 3 | 0 | logfile |
✔ | 6J6i | 0688 | 2022-05-17 | 2019-01-15 | 3.7 | 3.66 | — | 3.6 | 0.008 | 1.13 | 0.0 | 0.06 | 11.74 | 0.01 | 2.132 | 6.90 | 0.72 | 10.1 | 89.6 | 0.3 | -4.37 | 0.82 | 0.83 | 2.07 | 3.5 | 0.003 | 0.76 | 0.0 | 0.05 | 15.27 | 0.01 | 2.022 | 13.51 | 0.44 | 10.1 | 89.9 | 0.0 | -1.67 | 0.82 | 0.83 | 0.84 | 1.48 | 35992 | 4470 | 13 | 0 | 7 | 0 | 0 | logfile |
✔ | 5YFP | 6827 | 2022-05-16 | 2017-09-21 | 4.4 | 8.20 | — | 6.7 | 0.006 | 1.33 | 0.0 | 0.06 | 12.26 | 0.01 | 2.215 | 16.92 | 0.10 | 17.8 | 81.5 | 0.7 | -6.11 | 0.83 | 0.34 | — | 5.5 | 0.004 | 1.12 | 0.0 | 0.04 | 10.78 | 0.00 | 2.024 | 26.41 | 0.10 | 17.3 | 82.4 | 0.3 | -2.42 | 3.44 | 0.91 | 0.74 | — | 33096 | 5982 | 8 | 0 | 0 | 0 | 0 | logfile |