Table showing results for September 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6RiD	4889	2021-09-04	2019-04-23	2.9	2.97	2.84	2.9	0.005	0.77	0.0	0.05	14.04	0.01	2.078	3.52	0.14	3.6	96.4	0.0	-2.89	0.80	0.85	3.76	2.9	0.005	0.61	0.0	0.04	16.34	0.00	2.125	6.67	1.83	3.5	96.5	0.0	0.26	0.48	0.81	0.87	3.54	26705	3223	14	34	5	0	0	logfile
✔	6KZ4	0785	2021-09-03	2019-09-23	3.0	3.18	—	3.1	0.005	0.64	0.0	0.05	13.57	0.00	2.170	10.07	0.00	9.5	90.5	0.0	-4.51	0.80	0.86	2.99	3.1	0.003	0.62	0.0	0.05	15.62	0.00	2.152	9.81	2.05	8.7	91.3	0.0	-2.25	1.43	0.79	0.86	3.00	16698	2196	6	0	0	0	0	logfile
✔	5W7G	8780	2021-09-02	2017-06-19	4.5	4.20	—	4.2	0.015	1.17	0.0	0.07	15.16	0.01	2.165	6.62	0.45	1.2	98.8	0.0	-0.31	0.50	0.47	—	4.2	0.006	1.04	0.0	0.05	16.08	0.01	1.963	46.85	0.00	6.9	93.1	0.0	-1.71	2.25	0.53	0.54	—	53508	5397	44	504	0	0	0	logfile
✔	5Y4o	6805	2021-09-03	2017-08-04	3.8	3.55	—	3.6	0.022	2.44	28.0	0.12	19.88	0.02	0.471	77.29	20.31	7.8	87.8	4.5	-2.08	0.55	0.62	0.20	3.5	0.003	0.77	0.0	0.04	17.39	0.00	2.034	13.24	0.82	6.7	92.7	0.6	-0.16	1.94	0.59	0.73	1.29	12341	1561	7	0	0	0	0	logfile
✔	6K7N	9942	2021-09-03	2019-06-07	2.84	2.94	2.68	2.9	0.016	1.45	0.0	0.14	15.74	0.01	2.046	6.84	0.44	8.0	91.9	0.1	-3.74	0.61	0.85	3.92	2.9	0.003	0.65	0.0	0.04	16.72	0.00	1.994	10.72	1.92	5.7	94.3	0.0	-0.66	0.52	0.68	0.88	3.50	10544	1308	4	0	8	0	0	logfile
✔	5NV3	3699	2021-09-06	2017-05-03	3.39	3.43	—	3.4	0.007	1.21	2.0	0.07	14.58	0.00	2.164	3.27	0.94	5.6	94.2	0.2	-2.82	0.09	0.16	3.78	3.4	0.008	0.91	0.0	0.04	16.56	0.00	2.070	8.47	0.23	2.8	97.2	0.0	-0.11	1.64	0.68	0.77	4.10	37816	4768	24	0	16	0	0	logfile
✔	5SZS	8331	2021-09-05	2016-08-15	3.4	3.57	—	3.5	0.023	3.00	3.0	0.20	11.39	0.01	1.476	3.30	0.68	5.7	93.7	0.6	-0.27	0.85	0.83	2.56	3.5	0.004	0.64	0.0	0.05	13.17	0.00	2.108	5.68	0.42	5.2	94.5	0.3	0.09	0.75	0.86	0.86	2.70	30306	3531	6	0	222	0	0	logfile
✔	6U9F	20696	2021-09-04	2019-09-08	4.35	4.41	—	4.3	0.009	1.10	0.0	0.06	9.47	0.01	2.193	7.59	0.15	13.4	86.6	0.0	-4.71	0.78	0.78	—	4.3	0.002	0.65	0.0	0.05	12.03	0.00	2.096	12.22	0.00	8.5	91.5	0.0	-2.05	0.90	0.79	0.79	—	19179	2550	6	0	0	0	0	logfile
✔	5MMi	3531	2021-09-06	2016-12-10	3.2	3.30	—	3.2	0.008	1.15	0.0	0.05	16.64	0.01	1.753	7.83	9.25	5.3	94.4	0.3	-3.29	0.89	0.88	1.90	3.2	0.007	0.76	0.0	0.04	16.36	0.01	1.737	12.20	0.31	5.4	94.6	0.1	-1.06	2.07	0.88	0.86	1.54	95397	3769	56	3027	503	0	0	logfile
✔	6o77	0639	2021-09-05	2019-03-07	3.2	3.41	—	3.3	0.020	1.66	0.0	0.26	15.91	0.01	1.604	7.97	0.00	6.5	93.4	0.1	-5.77	0.63	0.79	3.12	3.3	0.003	0.73	0.0	0.04	17.10	0.00	2.187	16.22	0.10	6.7	93.2	0.1	-0.38	1.29	0.64	0.80	2.73	28884	3488	8	0	16	0	0	logfile
✔	6EF8	9046	2021-09-04	2018-08-16	3.7	3.63	—	3.6	0.007	1.38	0.0	0.06	14.34	0.01	2.023	12.83	0.00	11.4	88.1	0.5	-4.03	0.76	0.83	2.27	3.6	0.006	0.92	0.0	0.04	17.16	0.01	1.743	15.22	0.32	12.8	86.9	0.3	-2.43	0.58	0.77	0.84	1.83	22911	2849	14	0	42	0	0	logfile
✔	6o6R	0636	2021-09-05	2019-03-07	3.2	3.33	—	3.3	0.013	1.26	0.0	0.16	16.71	0.01	2.114	7.32	0.00	7.6	92.4	0.0	-6.54	0.61	0.79	2.48	3.3	0.008	0.89	0.0	0.04	16.87	0.00	2.002	14.92	0.07	7.6	92.4	0.0	-1.38	0.55	0.63	0.81	2.52	27744	3332	8	0	28	0	0	logfile
✔	5YKE	6831	2021-09-05	2017-10-14	4.11	4.22	3.92	4.1	0.006	0.80	0.0	0.05	13.44	0.01	2.246	11.42	7.60	3.7	95.9	0.4	-1.76	0.66	0.76	—	4.1	0.004	0.70	0.0	0.04	12.89	0.00	2.149	11.04	0.00	3.0	97.0	0.0	1.57	1.11	0.68	0.79	—	30636	3912	12	0	4	0	0	logfile
✔	6ND4	0441	2021-09-03	2018-12-13	4.3	4.41	—	4.2	0.010	1.03	0.0	0.06	14.45	0.02	2.230	5.19	0.00	6.4	93.6	0.1	-3.63	0.80	0.66	—	4.2	0.006	1.01	0.0	0.05	14.87	0.01	1.927	16.95	0.00	16.3	83.7	0.0	-3.22	1.31	0.85	0.77	—	63993	9225	30	551	1306	0	0	logfile
✔	6UH5	20767	2021-09-04	2019-09-26	3.5	3.78	—	3.5	0.011	1.39	38.0	0.09	23.74	0.01	1.749	10.35	2.23	5.2	94.5	0.3	-4.70	0.86	0.81	1.44	3.5	0.007	0.84	0.0	0.04	23.92	0.01	1.833	15.27	0.20	5.3	94.6	0.1	-1.35	2.45	0.86	0.81	1.13	24466	2320	21	292	2	0	0	logfile
✔	6S1N	10081	2021-09-04	2019-06-19	4.86	4.98	—	4.8	0.009	1.13	2.0	0.06	17.87	0.01	1.929	9.54	0.83	6.3	93.4	0.4	-3.47	0.73	0.53	—	4.8	0.003	0.78	0.0	0.04	16.35	0.01	2.103	18.67	0.00	5.6	94.4	0.0	-1.21	4.20	0.84	0.75	—	19726	2399	11	50	3	0	0	logfile
✔	6o72	0638	2021-09-05	2019-03-07	3.0	3.18	—	3.2	0.012	1.45	0.0	0.16	16.40	0.01	2.062	8.42	0.00	7.4	92.6	0.0	-6.25	0.63	0.80	2.52	3.2	0.004	0.80	0.0	0.04	17.85	0.01	2.190	12.67	3.16	7.0	93.0	0.0	0.20	0.79	0.64	0.81	1.95	28592	3432	8	0	28	0	0	logfile
✔	6K7M	9941	2021-09-03	2019-06-07	2.95	3.08	2.77	3.0	0.016	1.36	0.0	0.14	15.55	0.01	2.002	5.26	0.61	6.8	93.1	0.1	-3.41	0.65	0.85	3.61	3.0	0.003	0.62	0.0	0.04	16.15	0.00	2.009	9.95	2.53	4.4	95.6	0.0	-0.07	0.53	0.70	0.87	3.12	10591	1307	4	0	9	0	0	logfile
✔	6EU0	3955	2021-09-06	2017-10-27	4.0	4.06	—	4.0	0.005	1.08	0.0	0.06	14.27	0.01	1.879	8.40	0.53	15.4	84.3	0.3	-5.25	0.72	0.66	—	4.0	0.009	1.00	1.0	0.05	18.01	0.01	1.950	17.33	0.55	16.1	83.8	0.2	-2.85	2.58	0.77	0.74	—	48918	5949	28	108	8	0	0	logfile
✔	6K7i	9934	2021-09-03	2019-06-07	3.22	3.34	3.11	3.3	0.018	1.50	0.0	0.14	15.44	0.01	2.253	6.02	0.78	8.9	90.7	0.4	-4.41	0.60	0.84	3.87	3.3	0.003	0.65	0.0	0.04	16.24	0.00	2.149	9.17	0.17	5.2	94.8	0.0	-0.83	0.51	0.69	0.87	3.12	10590	1310	4	0	7	0	0	logfile

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