Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6PV8	20488	2022-07-04	2019-07-19	3.87	4.04	3.94	4.0	0.006	1.02	1.0	0.07	9.70	0.01	2.057	5.21	0.69	4.9	95.1	0.0	-2.83	0.70	0.79	2.52	4.0	0.012	1.06	1.0	0.05	14.82	0.01	2.141	10.65	0.46	4.5	95.5	0.0	-0.25	1.13	0.72	0.82	2.22	20051	2379	18	0	57	8	0	logfile
✔	6N23	9321	2022-07-04	2018-11-12	3.1	3.91	—	3.6	0.008	0.78	0.0	0.05	9.58	0.01	2.231	2.60	0.00	3.3	96.7	0.0	-5.52	0.79	0.87	4.09	3.6	0.002	0.55	0.0	0.04	12.60	0.00	2.275	5.29	0.12	2.2	97.8	0.0	1.96	2.23	0.71	0.83	2.76	14935	1815	10	0	5	0	0	logfile
✔	5XY3	6784	2022-07-02	2017-07-06	3.2	3.24	—	3.2	0.006	1.04	7.0	0.09	17.01	0.00	1.123	6.27	3.45	6.0	92.7	1.3	-3.33	0.61	0.76	2.54	3.2	0.007	0.78	3.0	0.04	16.61	0.01	1.765	9.19	0.20	5.0	94.7	0.4	-1.09	0.61	0.77	0.84	2.24	107145	5917	43	2815	0	0	0	logfile
✔	5FLX	3221	2022-07-05	2015-10-28	3.9	4.33	—	4.3	0.003	0.71	3.0	0.05	13.54	0.00	0.894	15.97	0.19	6.8	92.6	0.6	-2.97	0.42	0.58	0.37	4.2	0.004	0.77	0.0	0.04	16.83	0.01	1.899	21.83	0.99	8.4	91.1	0.5	-1.62	1.51	0.47	0.80	0.57	80592	4810	40	1972	76	0	0	logfile
✘	6N9U	0379	2022-07-03	2018-12-04	3.7	3.80	—	3.7	0.005	0.84	0.0	0.05	12.70	0.01	1.189	3.72	0.34	5.3	94.7	0.0	-4.67	0.75	0.82	3.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8822	1063	7	18	4	0	0	logfile
✔	6FQ8	4299	2022-07-03	2018-02-13	4.8	6.62	—	4.8	0.008	1.16	0.0	0.07	26.99	0.01	2.252	8.50	0.16	2.3	97.7	0.0	-0.86	0.84	0.71	—	4.9	0.005	0.74	0.0	0.04	30.16	0.01	1.999	26.10	0.00	3.7	96.3	0.0	0.60	0.92	0.86	0.76	—	11913	744	10	294	0	0	0	logfile
✔	6S5T	10100	2022-07-03	2019-07-02	4.15	4.28	4.17	4.2	0.007	1.48	3.0	0.09	17.31	0.00	2.450	5.23	3.93	7.1	92.4	0.6	-4.05	0.75	0.84	—	4.2	0.006	0.77	0.0	0.05	15.14	0.00	2.199	11.19	0.00	6.1	93.9	0.0	-0.57	1.49	0.76	0.82	—	6958	896	3	0	1	0	0	logfile
✔	6N24	9322	2022-07-03	2018-11-12	3.0	3.88	—	3.7	0.007	0.78	0.0	0.05	9.04	0.01	2.332	3.60	0.29	3.6	96.4	0.0	-6.07	0.73	0.84	3.71	3.8	0.004	0.66	0.0	0.04	14.17	0.00	2.098	7.29	2.30	2.1	97.9	0.0	0.26	2.31	0.64	0.73	2.88	12643	1530	5	0	0	0	0	logfile
✔	6N28	9326	2022-07-04	2018-11-12	2.9	3.06	—	3.1	0.006	0.78	0.0	0.05	9.54	0.01	2.215	3.56	0.00	2.4	97.6	0.0	-3.44	0.75	0.87	3.66	3.1	0.005	0.59	0.0	0.04	14.04	0.01	2.196	7.41	1.32	2.5	97.5	0.0	1.45	1.98	0.77	0.89	2.94	13885	1690	10	0	5	0	0	logfile
✔	6N26	9324	2022-07-03	2018-11-12	3.0	3.29	—	3.2	0.008	0.83	0.0	0.05	9.20	0.01	2.277	2.74	0.00	3.2	96.8	0.0	-6.12	0.72	0.83	4.16	3.2	0.003	0.65	0.0	0.04	15.89	0.00	2.208	7.03	2.01	1.1	98.9	0.0	0.77	0.72	0.72	0.84	2.60	13190	1595	5	0	0	0	0	logfile
✔	6NAV	0397	2022-07-04	2018-12-06	4.1	4.14	—	4.1	0.005	0.82	0.0	0.06	8.77	0.00	2.245	4.10	0.00	4.7	95.3	0.0	-2.96	0.62	0.82	—	4.1	0.003	0.59	0.0	0.04	11.67	0.00	2.145	7.83	0.00	6.1	93.9	0.0	-0.50	1.54	0.63	0.84	—	18711	2751	21	0	0	0	0	logfile
✔	6N25	9323	2022-07-04	2018-11-12	2.7	3.35	—	3.2	0.008	0.85	0.0	0.05	9.28	0.01	2.307	2.34	0.00	2.1	97.9	0.0	-6.12	0.77	0.88	4.62	3.2	0.003	0.54	0.0	0.04	14.78	0.00	2.220	5.66	1.70	2.3	97.7	0.0	1.08	3.82	0.66	0.83	2.97	13940	1690	10	0	5	0	0	logfile
✔	6N27	9325	2022-07-04	2018-11-12	3.0	3.04	—	3.0	0.007	0.88	0.0	0.05	9.61	0.01	2.305	3.26	0.00	1.8	98.2	0.0	-2.91	0.72	0.86	4.69	3.0	0.002	0.52	0.0	0.04	14.88	0.00	2.213	4.89	0.99	1.9	98.1	0.0	1.20	1.19	0.74	0.88	3.47	13930	1695	10	0	5	0	0	logfile
✔	6ESF	3947	2022-07-03	2017-10-20	3.7	3.94	—	3.9	0.008	0.97	0.0	0.05	28.67	0.01	2.249	5.14	0.94	4.4	95.6	0.0	-4.25	0.79	0.75	1.48	3.9	0.004	0.66	0.0	0.04	29.21	0.01	2.212	13.59	0.00	3.2	96.8	0.0	1.16	0.71	0.80	0.78	0.96	12091	762	10	294	0	0	0	logfile
✔	5WEK	8819	2022-07-05	2017-07-10	4.6	4.81	—	4.6	0.006	0.93	0.0	0.05	9.25	0.01	2.248	6.20	0.27	4.8	94.9	0.2	-4.07	0.74	0.76	—	4.6	0.003	0.68	0.0	0.04	11.63	0.00	2.186	13.35	0.07	5.3	94.6	0.1	-0.76	1.46	0.76	0.80	—	27468	3484	8	0	4	0	0	logfile
✘	5WEL	8820	2022-07-05	2017-07-10	4.4	4.52	—	4.4	0.006	0.94	0.0	0.05	9.16	0.01	1.428	8.23	0.61	6.5	93.4	0.1	-4.07	0.69	0.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	27638	3484	8	0	6	0	0	logfile
✘	6RX4	10049	2022-07-03	2019-06-07	3.3	3.78	3.21	3.8	0.007	1.12	0.0	0.06	11.76	0.01	1.205	5.46	0.14	4.5	95.5	0.0	-4.07	0.67	0.80	2.95	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7347	884	8	0	31	7	0	logfile
✔	6FQ6	4298	2022-07-03	2018-02-13	4.0	4.69	—	4.1	0.009	1.10	0.0	0.07	26.79	0.01	2.261	8.06	0.32	2.3	97.7	0.0	-0.84	0.84	0.73	—	4.0	0.004	0.77	0.0	0.04	29.21	0.00	2.067	24.47	0.32	3.9	96.1	0.0	-0.34	0.99	0.85	0.75	—	11987	752	10	294	0	0	0	logfile
✔	6DV6	8915	2022-07-07	2018-06-22	3.9	4.12	—	4.2	0.010	1.32	0.0	0.07	14.14	0.01	1.835	8.19	7.64	6.5	93.5	0.0	-4.93	0.71	0.80	1.58	4.2	0.004	0.84	0.0	0.05	16.03	0.01	2.076	11.10	0.91	4.6	95.4	0.0	-2.05	1.89	0.65	0.85	1.36	40950	5370	15	0	0	0	0	logfile
✔	3JA7	6324	2022-07-07	2015-04-21	3.6	3.71	—	3.7	0.010	1.53	0.0	0.06	15.94	0.01	1.528	38.36	10.44	11.0	86.8	2.1	-4.92	0.77	0.82	1.86	3.7	0.004	0.81	0.0	0.04	16.12	0.01	2.228	10.40	0.46	5.2	94.1	0.7	-1.18	1.71	0.77	0.81	1.44	41280	5136	12	0	0	0	0	logfile

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