Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5WEL	8820	2022-05-15	2017-07-10	4.4	4.52	—	4.4	0.020	0.96	0.0	0.06	12.16	0.01	2.206	8.23	0.61	6.5	93.4	0.1	-4.07	0.69	0.68	—	4.4	0.003	0.72	0.0	0.04	13.09	0.00	2.103	18.91	0.00	5.4	94.6	0.0	-0.68	1.15	0.75	0.78	—	27638	3484	8	0	6	0	0	logfile
✔	6FQ8	4299	2022-05-13	2018-02-13	4.8	6.62	—	4.8	0.008	1.16	0.0	0.07	26.99	0.01	2.252	8.50	0.16	2.3	97.7	0.0	-0.86	0.84	0.71	—	4.9	0.005	0.74	0.0	0.04	30.16	0.01	1.999	26.10	0.00	3.7	96.3	0.0	0.60	0.92	0.86	0.76	—	11913	744	10	294	0	0	0	logfile
✔	6DV6	8915	2022-05-17	2018-06-22	3.9	4.12	—	4.2	0.010	1.32	0.0	0.07	14.14	0.01	1.835	8.19	7.64	6.5	93.5	0.0	-4.93	0.71	0.80	1.58	4.2	0.004	0.84	0.0	0.05	16.03	0.01	2.076	11.10	0.91	4.6	95.4	0.0	-2.05	1.89	0.65	0.85	1.36	40950	5370	15	0	0	0	0	logfile
✔	6N07	9312	2022-05-16	2018-11-06	3.6	3.73	—	3.7	0.007	0.77	0.0	0.05	9.00	0.01	2.330	5.07	0.06	2.3	97.7	0.0	-3.72	0.78	0.86	3.84	3.7	0.005	0.70	0.0	0.05	14.93	0.00	2.118	13.51	0.53	2.1	97.9	0.0	0.04	2.18	0.79	0.86	2.80	32833	4523	42	0	0	0	0	logfile
✔	6PEV	20333	2022-05-18	2019-06-21	3.2	3.28	—	3.3	0.008	0.99	0.0	0.06	16.57	0.01	2.103	6.84	1.84	4.9	94.9	0.2	-4.14	0.78	0.83	3.46	3.2	0.003	0.65	0.0	0.04	16.86	0.00	1.977	12.67	0.23	4.0	96.0	0.0	-0.34	1.17	0.77	0.86	3.45	46368	5736	24	0	24	0	0	logfile
✘	6TM5	10518	2022-05-13	2019-12-03	3.9	4.07	—	4.1	0.010	1.11	0.0	0.05	15.92	0.01	1.619	28.92	0.76	11.9	87.8	0.3	-4.46	0.36	0.48	0.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	63885	8117	23	0	3	0	0	logfile
✘	6EF0	9042	2022-05-15	2018-08-15	4.43	3.84	—	4.1	0.011	1.07	0.0	0.06	12.59	0.01	2.089	8.62	0.00	16.8	83.2	0.0	-5.24	0.62	0.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24748	3318	20	0	6	0	0	logfile
✔	6SCJ	10141	2022-05-17	2019-07-24	3.6	3.92	—	3.8	0.004	0.98	0.0	0.06	10.84	0.01	2.235	4.92	0.14	13.3	86.6	0.1	-4.97	0.78	0.76	1.82	3.8	0.003	0.75	0.0	0.04	14.11	0.01	2.036	11.28	0.37	10.5	89.5	0.0	-2.15	1.25	0.79	0.78	1.38	39884	5102	4	0	36	0	0	logfile
✔	3JA7	6324	2022-05-17	2015-04-21	3.6	3.71	—	3.7	0.010	1.53	0.0	0.06	15.94	0.01	1.528	38.36	10.44	11.0	86.8	2.1	-4.92	0.77	0.82	1.86	3.7	0.004	0.81	0.0	0.04	16.12	0.01	2.228	10.40	0.46	5.2	94.1	0.7	-1.18	1.71	0.77	0.81	1.44	41280	5136	12	0	0	0	0	logfile
✔	5WQ9	6677	2022-05-12	2016-11-23	4.22	4.37	—	4.2	0.009	1.22	15.0	0.07	11.97	0.01	1.501	38.54	2.89	4.4	95.4	0.2	-2.32	0.78	0.68	—	4.2	0.003	0.74	0.0	0.05	12.94	0.00	2.122	13.79	0.08	3.6	96.4	0.0	0.29	2.31	0.85	0.83	—	56340	7395	15	0	0	0	0	logfile
✔	6QJM	4564	2022-05-12	2019-01-24	3.3	3.49	1.95	3.4	0.010	1.01	0.0	0.07	8.06	0.01	2.408	6.17	0.00	9.1	90.9	0.0	-2.36	0.38	0.76	3.31	3.5	0.003	0.58	0.0	0.06	13.83	0.00	2.178	4.49	0.00	5.1	94.9	0.0	-2.27	1.60	0.34	0.74	3.53	846	111	3	0	0	0	0	logfile
✔	6CAJ	7442	2022-05-15	2018-01-31	2.8	2.84	—	4.2	0.008	0.88	0.0	0.17	9.84	0.01	1.467	5.96	0.24	4.5	95.5	0.0	-3.63	0.33	0.15	2.28	2.9	0.011	1.12	2.0	0.04	15.91	0.00	1.756	14.31	2.92	4.3	95.7	0.0	-0.61	0.75	0.75	0.82	2.85	24295	3210	11	0	1	0	0	logfile
✔	6QJP	4565	2022-05-12	2019-01-24	3.5	3.64	2.32	4.1	0.009	1.01	0.0	0.07	9.52	0.01	2.605	1.16	0.00	3.2	96.8	0.0	-2.50	0.37	0.74	3.05	4.2	0.003	0.70	0.0	0.05	12.40	0.00	2.347	10.42	0.00	1.1	98.9	0.0	-3.47	1.59	0.32	0.72	4.10	816	105	3	0	0	0	0	logfile
✘	6N06	9311	2022-05-15	2018-11-06	3.4	3.49	—	3.5	0.005	0.74	0.0	0.05	8.24	0.01	2.241	7.24	0.04	1.9	98.1	0.0	-4.01	0.76	0.86	3.99	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	28197	3915	39	0	0	0	0	logfile
✘	6C0W	7326	2022-05-13	2018-01-02	4.0	4.10	3.87	4.0	0.006	0.81	0.0	0.05	27.80	0.01	2.107	4.30	0.00	4.9	95.1	0.0	-4.19	0.80	0.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13122	925	11	278	0	0	0	logfile
✘	6Jo5	9853	2022-05-18	2019-03-20	2.9	2.97	—	2.9	0.028	2.73	0.0	0.09	18.14	0.02	1.209	12.17	0.43	4.0	96.0	0.1	-2.29	0.79	0.84	3.89	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	48476	4170	40	0	313	0	0	logfile
✔	6NMC	0446	2022-05-13	2019-01-10	4.24	4.55	—	4.2	0.014	1.16	6.0	0.07	16.40	0.01	2.015	20.07	2.45	10.2	89.4	0.4	-4.23	0.86	0.76	—	4.2	0.007	0.85	0.0	0.05	14.43	0.00	1.809	27.33	0.07	9.6	90.4	0.0	-1.43	1.84	0.90	0.85	—	12808	1480	8	25	2	6	0	logfile
✔	6HiZ	0233	2022-05-15	2018-08-31	3.08	3.20	3.05	3.1	0.009	1.39	0.0	0.06	18.06	0.01	1.866	11.28	12.80	3.2	96.7	0.1	-2.90	0.89	0.91	2.63	3.1	0.002	0.56	0.0	0.04	16.90	0.00	1.966	8.31	0.20	3.2	96.7	0.0	1.36	0.78	0.87	0.89	2.58	76845	9056	33	143	19	3	0	logfile
✔	6J6i	0688	2022-05-17	2019-01-15	3.7	3.66	—	3.6	0.008	1.13	0.0	0.06	11.74	0.01	2.132	6.90	0.72	10.1	89.6	0.3	-4.37	0.82	0.83	2.07	3.5	0.003	0.76	0.0	0.05	15.27	0.01	2.022	13.51	0.44	10.1	89.9	0.0	-1.67	0.82	0.83	0.84	1.48	35992	4470	13	0	7	0	0	logfile
✔	5YFP	6827	2022-05-16	2017-09-21	4.4	8.20	—	6.7	0.006	1.33	0.0	0.06	12.26	0.01	2.215	16.92	0.10	17.8	81.5	0.7	-6.11	0.83	0.34	—	5.5	0.004	1.12	0.0	0.04	10.78	0.00	2.024	26.41	0.10	17.3	82.4	0.3	-2.42	3.44	0.91	0.74	—	33096	5982	8	0	0	0	0	logfile

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