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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6TQM | 10555 | 2023-08-24 | 2019-12-16 | 3.8 | 4.34 | 3.78 | 20.0 | 0.014 | 0.98 | 0.0 | 0.12 | 15.01 | 0.01 | 2.083 | 4.06 | 1.40 | 14.5 | 85.5 | 0.0 | -5.95 | 0.30 | 0.07 | 0.30 | 3.9 | 0.003 | 0.78 | 0.0 | 0.04 | 15.99 | 0.00 | 1.902 | 16.86 | 0.14 | 11.1 | 88.9 | 0.0 | -3.64 | 1.33 | 0.39 | 0.26 | 0.42 | 39616 | 2578 | 6 | 0 | 4 | 0 | 19804 | logfile |
✔ | 7R4H | 14312 | 2023-08-14 | 2022-02-08 | 2.34 | 3.05 | 2.43 | 2.9 | 0.006 | 1.22 | 1.0 | 0.06 | 19.22 | 0.01 | 2.119 | 5.33 | 3.93 | 3.7 | 96.3 | 0.0 | -3.26 | 0.80 | 0.83 | 2.89 | 2.9 | 0.003 | 0.63 | 0.0 | 0.04 | 18.72 | 0.00 | 1.912 | 10.30 | 3.88 | 3.0 | 97.0 | 0.0 | 0.42 | 1.33 | 0.79 | 0.83 | 3.29 | 16485 | 2049 | 9 | 0 | 4 | 0 | 0 | logfile |
✔ | 7TRA | 26084 | 2023-08-23 | 2022-01-28 | 3.3 | 3.94 | — | 3.8 | 0.003 | 0.60 | 0.0 | 0.04 | 15.24 | 0.00 | 2.017 | 16.19 | 0.00 | 7.6 | 92.1 | 0.3 | -1.17 | 0.80 | 0.73 | 0.77 | 3.7 | 0.004 | 0.74 | 0.0 | 0.05 | 17.19 | 0.00 | 1.948 | 23.57 | 0.47 | 8.6 | 91.2 | 0.2 | -1.36 | 1.37 | 0.83 | 0.82 | 1.40 | 34872 | 4174 | 20 | 113 | 2 | 0 | 0 | logfile |
✔ | 7S9D | 24933 | 2023-08-11 | 2021-09-20 | 4.6 | 4.40 | — | 4.1 | 0.006 | 0.89 | 0.0 | 0.05 | 11.27 | 0.00 | 2.095 | 23.20 | 0.35 | 10.7 | 89.0 | 0.3 | -0.95 | 0.61 | 0.80 | — | 4.1 | 0.002 | 0.63 | 0.0 | 0.04 | 11.92 | 0.00 | 2.234 | 10.40 | 0.00 | 7.4 | 92.3 | 0.3 | -0.77 | 0.46 | 0.59 | 0.77 | — | 10462 | 1354 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Y90 | 10731 | 2023-08-11 | 2020-03-06 | 3.69 | 4.05 | — | 4.0 | 0.007 | 0.90 | 0.0 | 0.07 | 14.16 | 0.00 | 2.268 | 7.74 | 0.19 | 2.8 | 97.2 | 0.0 | 0.18 | 0.59 | 0.76 | 1.32 | 4.0 | 0.003 | 0.70 | 0.0 | 0.04 | 16.09 | 0.00 | 2.171 | 11.89 | 0.39 | 4.9 | 95.1 | 0.0 | -0.32 | 0.99 | 0.59 | 0.80 | 1.49 | 9778 | 1218 | 8 | 0 | 20 | 0 | 0 | logfile |
✔ | 7UWN | 26837 | 2023-08-11 | 2022-05-03 | 3.01 | 2.26 | 3.04 | 1.6 | 0.004 | 0.64 | 0.0 | 0.04 | 16.59 | 0.00 | 2.105 | 14.51 | 2.21 | 6.1 | 93.9 | 0.0 | -1.09 | 0.66 | 0.63 | 1.06 | 1.5 | 0.004 | 0.65 | 0.0 | 0.05 | 16.70 | 0.00 | 2.117 | 15.57 | 0.51 | 6.0 | 94.0 | 0.0 | -1.14 | 0.33 | 0.66 | 0.64 | 0.94 | 10602 | 1325 | 12 | 0 | 11 | 0 | 0 | logfile |
✔ | 7SPA | 25370 | 2023-08-10 | 2021-11-02 | 2.8 | 3.04 | — | 2.9 | 0.004 | 0.57 | 0.0 | 0.05 | 11.96 | 0.00 | 2.275 | 6.27 | 0.00 | 1.4 | 98.6 | 0.0 | 1.68 | 0.71 | 0.77 | 2.48 | 2.9 | 0.004 | 0.65 | 0.0 | 0.04 | 15.48 | 0.00 | 2.078 | 9.94 | 1.59 | 3.0 | 96.8 | 0.1 | 1.36 | 0.78 | 0.76 | 0.86 | 4.32 | 6017 | 737 | 3 | 0 | 3 | 0 | 0 | logfile |
✔ | 7oE3 | 12860 | 2023-08-12 | 2021-05-01 | 3.35 | 4.05 | 3.43 | 3.4 | 0.003 | 0.52 | 0.0 | 0.04 | 15.39 | 0.00 | 2.179 | 5.99 | 3.39 | 8.2 | 91.8 | 0.0 | -2.02 | 0.92 | 0.87 | 2.22 | 3.4 | 0.003 | 0.61 | 0.0 | 0.04 | 16.07 | 0.00 | 2.102 | 7.34 | 0.22 | 8.0 | 92.0 | 0.0 | 0.32 | 0.41 | 0.93 | 0.90 | 1.77 | 11904 | 1478 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7T54 | 25694 | 2023-08-10 | 2021-12-11 | 4.5 | 7.46 | 4.54 | 4.6 | 0.004 | 0.70 | 1.0 | 0.05 | 10.84 | 0.00 | 2.078 | 8.94 | 0.68 | 4.4 | 95.5 | 0.1 | 0.70 | 0.62 | 0.64 | — | 4.6 | 0.005 | 0.74 | 0.0 | 0.04 | 11.24 | 0.00 | 2.155 | 18.95 | 0.00 | 9.4 | 90.3 | 0.3 | -0.60 | 1.60 | 0.70 | 0.81 | — | 8552 | 1416 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7UWM | 26836 | 2023-08-10 | 2022-05-03 | 2.5 | 2.14 | 2.51 | 1.9 | 0.004 | 0.59 | 0.0 | 0.04 | 18.27 | 0.00 | 2.107 | 6.68 | 2.96 | 3.0 | 97.0 | 0.0 | -0.69 | 0.80 | 0.79 | 2.42 | 1.9 | 0.003 | 0.57 | 0.0 | 0.04 | 18.46 | 0.00 | 2.122 | 7.90 | 4.39 | 3.5 | 96.5 | 0.0 | -0.58 | 0.24 | 0.80 | 0.79 | 2.46 | 7972 | 967 | 9 | 0 | 9 | 0 | 0 | logfile |
✘ | 6PCV | 20308 | 2023-08-11 | 2019-06-18 | 3.2 | 2.93 | 3.33 | 3.3 | 0.006 | 0.98 | 0.0 | 0.06 | 14.31 | 0.01 | 2.235 | 6.90 | 0.71 | 4.0 | 96.0 | 0.0 | -3.37 | 0.71 | 0.72 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9035 | 1155 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 5A6F | 3063 | 2023-08-11 | 2015-06-25 | 4.2 | 5.75 | — | 5.0 | 0.012 | 1.50 | 0.0 | 0.05 | 12.32 | 0.01 | 2.112 | 10.08 | 3.74 | 12.2 | 87.6 | 0.2 | -4.94 | 0.56 | 0.74 | — | 4.9 | 0.002 | 0.56 | 0.0 | 0.04 | 10.89 | 0.00 | 2.048 | 8.96 | 0.00 | 4.7 | 95.3 | 0.0 | -0.78 | 0.97 | 0.57 | 0.75 | — | 8881 | 540 | 2 | 0 | 43 | 0 | 4330 | logfile |
✔ | 8DWS | 27758 | 2023-08-15 | 2022-08-02 | 3.73 | 4.92 | 3.73 | 3.6 | 0.004 | 0.79 | 4.0 | 0.05 | 14.37 | 0.00 | 2.013 | 6.84 | 0.32 | 8.2 | 91.2 | 0.6 | -1.47 | 0.69 | 0.45 | 0.78 | 3.6 | 0.007 | 0.92 | 0.0 | 0.05 | 15.86 | 0.00 | 2.010 | 32.17 | 0.21 | 9.9 | 89.5 | 0.6 | -1.42 | 1.99 | 0.90 | 0.83 | 0.71 | 17229 | 2182 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KLL | 0711 | 2023-08-12 | 2019-07-30 | 3.0 | 3.78 | — | 3.3 | 0.007 | 0.78 | 0.0 | 0.05 | 15.55 | 0.00 | 1.944 | 7.72 | 7.64 | 5.4 | 94.6 | 0.0 | -3.74 | 0.68 | 0.87 | 3.00 | 3.3 | 0.004 | 0.60 | 0.0 | 0.05 | 15.87 | 0.00 | 1.892 | 6.74 | 2.71 | 4.1 | 95.9 | 0.0 | -0.28 | 1.18 | 0.68 | 0.90 | 2.59 | 11748 | 1488 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 8AZA | 15757 | 2023-08-09 | 2022-09-05 | 3.15 | 4.29 | 3.15 | 3.5 | 0.004 | 0.76 | 1.0 | 0.05 | 17.83 | 0.01 | 2.202 | 26.58 | 0.73 | 4.9 | 95.1 | 0.0 | -0.75 | 0.83 | 0.67 | 0.65 | 3.5 | 0.003 | 0.79 | 0.0 | 0.05 | 18.00 | 0.01 | 2.231 | 23.06 | 0.55 | 4.6 | 95.4 | 0.0 | -0.53 | 0.69 | 0.84 | 0.71 | 0.66 | 4970 | 606 | 4 | 0 | 1 | 0 | 0 | logfile |
✘ | 7AR8 | 11876 | 2023-08-11 | 2020-10-23 | 3.53 | 3.65 | 3.41 | 3.6 | 0.004 | 0.73 | 0.0 | 0.07 | 14.85 | 0.00 | 2.002 | 12.79 | 0.03 | 7.3 | 92.7 | 0.0 | -0.59 | 0.78 | 0.83 | 2.08 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 61461 | 7676 | 64 | 0 | 55 | 0 | 0 | logfile |
✔ | 7TUY | 26135 | 2023-08-10 | 2022-02-03 | 2.98 | 3.60 | — | 3.4 | 0.005 | 0.87 | 0.0 | 0.05 | 12.82 | 0.01 | 2.202 | 7.13 | 0.26 | 5.6 | 94.4 | 0.0 | -3.71 | 0.68 | 0.81 | 3.08 | 3.4 | 0.019 | 0.75 | 0.0 | 0.04 | 15.45 | 0.01 | 2.177 | 10.74 | 2.72 | 5.5 | 94.5 | 0.0 | -1.18 | 1.02 | 0.69 | 0.83 | 2.03 | 7157 | 928 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 7S9E | 24934 | 2023-08-11 | 2021-09-20 | 3.7 | 3.21 | — | 3.6 | 0.004 | 0.72 | 0.0 | 0.05 | 13.53 | 0.00 | 2.202 | 11.48 | 0.00 | 7.1 | 92.9 | 0.0 | -0.36 | 0.60 | 0.81 | 2.60 | 3.6 | 0.003 | 0.59 | 0.0 | 0.04 | 15.29 | 0.00 | 2.245 | 10.30 | 0.35 | 6.3 | 93.7 | 0.0 | 0.89 | 0.48 | 0.61 | 0.81 | 2.46 | 10476 | 1354 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7SYE | 25523 | 2023-08-16 | 2021-11-24 | 3.3 | 4.16 | — | 3.5 | 0.007 | 0.86 | 2.0 | 0.05 | 14.40 | 0.00 | 2.060 | 11.84 | 1.65 | 14.8 | 84.9 | 0.3 | -4.43 | 0.85 | 0.77 | 2.18 | 3.5 | 0.003 | 0.68 | 0.0 | 0.04 | 14.87 | 0.00 | 2.121 | 11.74 | 0.35 | 10.4 | 89.5 | 0.1 | -1.89 | 0.56 | 0.89 | 0.86 | 2.05 | 10216 | 1322 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6UKS | 20811 | 2023-08-25 | 2019-10-05 | 3.2 | 2.36 | — | 3.2 | 0.009 | 0.88 | 0.0 | 0.05 | 14.20 | 0.01 | 2.007 | 2.74 | 0.32 | 8.4 | 91.6 | 0.0 | -3.37 | 0.76 | 0.80 | 3.01 | 3.2 | 0.005 | 0.59 | 0.0 | 0.04 | 16.31 | 0.00 | 1.891 | 7.23 | 0.14 | 6.0 | 94.0 | 0.0 | -0.76 | 1.08 | 0.77 | 0.84 | 3.04 | 40838 | 2534 | 14 | 0 | 14 | 0 | 20160 | logfile |