Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6WHR	21673	2023-02-24	2020-04-08	3.99	4.51	—	4.3	0.015	1.22	0.0	0.07	15.42	0.01	1.968	30.78	2.94	21.2	78.0	0.8	-5.90	0.69	0.73	1.29	4.3	0.005	0.77	0.0	0.05	15.92	0.00	2.124	13.66	0.39	10.4	89.5	0.2	-1.91	0.52	0.77	0.83	1.07	23370	3166	10	0	14	0	0	logfile
✔	6V11	21009	2023-02-24	2019-11-19	3.8	4.18	3.97	4.1	0.008	1.07	0.0	0.06	11.18	0.01	2.243	6.55	0.90	8.1	91.9	0.0	-4.51	0.79	0.81	1.63	4.1	0.003	0.73	0.0	0.04	14.42	0.00	2.134	11.45	0.33	5.1	94.9	0.0	-0.85	2.18	0.80	0.82	1.07	22626	2915	11	0	5	0	0	logfile
✔	5V8M	8644	2023-02-23	2017-03-22	4.4	4.52	—	4.3	0.015	1.82	0.0	0.11	9.94	0.01	2.124	5.99	0.14	2.4	97.6	0.0	2.25	0.75	0.75	—	4.3	0.005	0.71	0.0	0.04	11.84	0.00	2.078	12.41	0.05	5.3	94.7	0.0	0.60	0.81	0.78	0.81	—	20835	2376	57	0	153	0	0	logfile
✔	7T6P	25723	2023-02-23	2021-12-14	2.8	3.33	—	3.3	0.005	1.13	0.0	0.06	14.54	0.01	2.310	3.72	0.00	4.0	96.0	0.0	-3.37	0.59	0.76	2.86	3.3	0.003	0.66	0.0	0.04	17.05	0.00	2.172	10.89	1.67	4.4	95.6	0.0	0.50	0.50	0.54	0.74	2.44	19412	2424	4	0	0	0	0	logfile
✔	7KUY	23041	2023-02-21	2020-11-25	3.6	3.77	—	3.8	0.006	0.91	0.0	0.06	14.08	0.01	2.208	7.93	0.14	6.3	93.7	0.0	-4.24	0.70	0.86	3.06	3.8	0.003	0.63	0.0	0.04	15.62	0.00	2.130	11.31	0.42	3.5	96.5	0.0	-1.08	0.46	0.70	0.85	2.41	13633	1694	10	0	14	0	0	logfile
✔	6Vo3	21258	2023-02-23	2020-01-29	4.25	4.75	—	4.5	0.019	1.81	0.0	0.10	10.96	0.01	2.385	1.91	0.44	3.8	95.7	0.5	0.21	0.75	0.75	—	4.5	0.004	0.82	0.0	0.05	13.04	0.00	2.136	21.29	0.05	7.6	92.0	0.4	-0.32	1.14	0.76	0.78	—	19554	2334	39	0	78	0	0	logfile
✔	6VAK	21141	2023-02-24	2019-12-17	3.48	3.85	—	3.8	0.004	0.77	0.0	0.04	14.36	0.00	2.047	7.47	2.96	8.2	91.8	0.0	-2.80	0.73	0.81	3.28	3.8	0.002	0.58	0.0	0.03	16.38	0.00	2.190	5.71	0.72	5.9	94.1	0.0	2.31	0.55	0.70	0.82	2.80	22781	2992	11	0	0	0	0	logfile
✔	8DW2	27749	2023-02-19	2022-07-30	4.11	4.56	4.33	4.3	0.003	0.80	0.0	0.05	16.97	0.01	2.127	18.20	0.48	6.2	93.7	0.1	-0.94	0.76	0.78	—	4.3	0.003	0.69	0.0	0.05	14.00	0.00	2.128	16.79	0.00	7.3	92.6	0.1	-0.80	1.06	0.77	0.80	—	9364	1223	7	0	3	0	0	logfile
✔	7XMG	33296	2023-02-20	2022-04-25	3.09	3.36	3.11	3.4	0.007	0.83	1.0	0.13	16.99	0.01	2.017	20.33	4.46	7.3	92.4	0.3	-2.84	0.50	0.67	1.81	3.4	0.003	0.70	0.0	0.04	17.62	0.00	2.096	12.11	0.23	5.4	94.6	0.0	-0.49	0.56	0.55	0.76	1.69	11692	1431	7	0	10	0	0	logfile
✔	7T3i	25659	2023-02-25	2021-12-08	4.3	4.36	—	4.3	0.003	0.59	0.0	0.04	12.51	0.00	2.101	11.21	0.07	5.7	94.1	0.2	0.58	0.80	0.82	—	4.3	0.004	0.61	0.0	0.04	13.00	0.00	2.106	12.83	0.00	7.0	92.8	0.2	0.67	1.13	0.80	0.83	—	26799	3437	12	0	36	0	0	logfile
✔	6SoF	10273	2023-02-27	2019-08-29	4.3	4.23	4.20	4.1	0.006	0.93	0.0	0.05	14.59	0.01	2.017	10.51	0.62	17.7	82.3	0.0	-5.47	0.82	0.72	—	4.1	0.003	0.67	0.0	0.04	13.36	0.00	1.934	15.84	0.00	15.3	84.7	0.0	-3.90	1.45	0.82	0.72	—	30333	1966	12	0	0	0	14564	logfile
✔	7MQo	23949	2023-02-19	2021-05-06	3.4	3.62	3.43	3.7	0.004	0.69	0.0	0.05	14.78	0.01	2.030	10.26	0.17	13.1	86.7	0.2	-2.87	0.67	0.75	1.17	3.7	0.003	0.65	0.0	0.05	16.92	0.00	2.124	10.78	0.25	13.6	86.3	0.1	-2.71	0.49	0.68	0.79	1.51	10642	1288	10	0	16	0	0	logfile
✔	7XJ3	33218	2023-02-22	2022-04-14	3.54	3.75	3.55	3.7	0.019	1.03	0.0	0.04	16.43	0.01	2.242	12.56	6.79	8.8	91.2	0.0	-3.52	0.69	0.84	1.76	3.8	0.002	0.57	0.0	0.04	16.37	0.00	2.283	5.90	0.46	4.1	95.9	0.0	0.42	1.21	0.65	0.80	1.22	18493	2428	8	0	14	0	0	logfile
✔	7KiP	22889	2023-02-27	2020-10-24	3.39	4.00	3.47	3.9	0.009	0.90	0.0	0.06	8.62	0.01	2.290	1.86	0.00	7.9	92.1	0.1	-4.05	0.83	0.84	3.42	3.9	0.003	0.55	0.0	0.04	11.32	0.00	2.214	4.09	0.13	5.8	94.2	0.0	-1.42	0.57	0.85	0.87	2.65	30612	3576	69	0	222	0	0	logfile
✔	3JD3	6632	2023-02-24	2016-03-28	3.6	3.38	—	3.5	0.011	1.02	0.0	0.06	11.40	0.01	2.125	18.17	0.00	10.7	89.3	0.0	-5.32	0.81	0.80	2.72	3.2	0.003	0.65	0.0	0.04	15.34	0.00	2.140	12.61	0.28	4.0	96.0	0.0	-0.42	1.00	0.81	0.83	2.27	24006	2976	12	0	18	0	0	logfile
✔	8DN8	27556	2023-02-20	2022-07-10	3.7	4.03	3.79	4.0	0.003	0.61	0.0	0.04	13.76	0.00	2.157	9.82	0.00	6.0	94.0	0.0	-0.14	0.72	0.82	1.16	3.9	0.003	0.66	0.0	0.04	16.11	0.00	2.185	11.45	0.60	5.6	94.4	0.0	-0.15	0.57	0.72	0.81	1.19	10638	1300	6	0	2	0	0	logfile
✔	8GSZ	34244	2023-02-17	2022-09-07	3.65	3.14	3.68	3.8	0.006	0.86	0.0	0.05	15.61	0.01	2.241	12.76	0.39	2.7	97.3	0.0	-5.38	0.62	0.76	1.72	3.8	0.003	0.69	0.0	0.04	17.49	0.00	2.123	9.67	0.39	4.0	96.0	0.0	-0.70	0.76	0.62	0.76	0.90	4870	620	2	0	0	0	0	logfile
✔	7TJS	25930	2023-02-24	2022-01-17	3.2	3.47	3.27	3.4	0.003	0.60	0.0	0.05	12.62	0.00	1.901	1.77	0.00	1.5	98.5	0.0	0.55	0.78	0.85	3.14	3.4	0.006	0.65	0.0	0.05	15.00	0.00	1.883	5.67	0.16	2.6	97.4	0.0	0.79	0.54	0.73	0.86	2.54	23539	3102	12	0	8	0	0	logfile
✘	7F3T	31440	2023-02-17	2021-06-17	3.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5632	660	4	0	2	0	0	logfile
✔	7FiY	31606	2023-02-19	2021-08-01	3.4	3.64	—	3.6	0.004	0.82	0.0	0.06	8.14	0.01	2.275	3.69	0.00	2.6	97.4	0.0	-1.10	0.67	0.75	2.44	3.6	0.003	0.58	0.0	0.04	14.14	0.00	2.105	9.47	0.31	2.5	97.5	0.0	1.25	1.71	0.70	0.80	2.00	9367	1152	7	0	6	0	0	logfile

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