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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6WHR | 21673 | 2023-02-24 | 2020-04-08 | 3.99 | 4.51 | — | 4.3 | 0.015 | 1.22 | 0.0 | 0.07 | 15.42 | 0.01 | 1.968 | 30.78 | 2.94 | 21.2 | 78.0 | 0.8 | -5.90 | 0.69 | 0.73 | 1.29 | 4.3 | 0.005 | 0.77 | 0.0 | 0.05 | 15.92 | 0.00 | 2.124 | 13.66 | 0.39 | 10.4 | 89.5 | 0.2 | -1.91 | 0.52 | 0.77 | 0.83 | 1.07 | 23370 | 3166 | 10 | 0 | 14 | 0 | 0 | logfile |
✔ | 6V11 | 21009 | 2023-02-24 | 2019-11-19 | 3.8 | 4.18 | 3.97 | 4.1 | 0.008 | 1.07 | 0.0 | 0.06 | 11.18 | 0.01 | 2.243 | 6.55 | 0.90 | 8.1 | 91.9 | 0.0 | -4.51 | 0.79 | 0.81 | 1.63 | 4.1 | 0.003 | 0.73 | 0.0 | 0.04 | 14.42 | 0.00 | 2.134 | 11.45 | 0.33 | 5.1 | 94.9 | 0.0 | -0.85 | 2.18 | 0.80 | 0.82 | 1.07 | 22626 | 2915 | 11 | 0 | 5 | 0 | 0 | logfile |
✔ | 5V8M | 8644 | 2023-02-23 | 2017-03-22 | 4.4 | 4.52 | — | 4.3 | 0.015 | 1.82 | 0.0 | 0.11 | 9.94 | 0.01 | 2.124 | 5.99 | 0.14 | 2.4 | 97.6 | 0.0 | 2.25 | 0.75 | 0.75 | — | 4.3 | 0.005 | 0.71 | 0.0 | 0.04 | 11.84 | 0.00 | 2.078 | 12.41 | 0.05 | 5.3 | 94.7 | 0.0 | 0.60 | 0.81 | 0.78 | 0.81 | — | 20835 | 2376 | 57 | 0 | 153 | 0 | 0 | logfile |
✔ | 7T6P | 25723 | 2023-02-23 | 2021-12-14 | 2.8 | 3.33 | — | 3.3 | 0.005 | 1.13 | 0.0 | 0.06 | 14.54 | 0.01 | 2.310 | 3.72 | 0.00 | 4.0 | 96.0 | 0.0 | -3.37 | 0.59 | 0.76 | 2.86 | 3.3 | 0.003 | 0.66 | 0.0 | 0.04 | 17.05 | 0.00 | 2.172 | 10.89 | 1.67 | 4.4 | 95.6 | 0.0 | 0.50 | 0.50 | 0.54 | 0.74 | 2.44 | 19412 | 2424 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7KUY | 23041 | 2023-02-21 | 2020-11-25 | 3.6 | 3.77 | — | 3.8 | 0.006 | 0.91 | 0.0 | 0.06 | 14.08 | 0.01 | 2.208 | 7.93 | 0.14 | 6.3 | 93.7 | 0.0 | -4.24 | 0.70 | 0.86 | 3.06 | 3.8 | 0.003 | 0.63 | 0.0 | 0.04 | 15.62 | 0.00 | 2.130 | 11.31 | 0.42 | 3.5 | 96.5 | 0.0 | -1.08 | 0.46 | 0.70 | 0.85 | 2.41 | 13633 | 1694 | 10 | 0 | 14 | 0 | 0 | logfile |
✔ | 6Vo3 | 21258 | 2023-02-23 | 2020-01-29 | 4.25 | 4.75 | — | 4.5 | 0.019 | 1.81 | 0.0 | 0.10 | 10.96 | 0.01 | 2.385 | 1.91 | 0.44 | 3.8 | 95.7 | 0.5 | 0.21 | 0.75 | 0.75 | — | 4.5 | 0.004 | 0.82 | 0.0 | 0.05 | 13.04 | 0.00 | 2.136 | 21.29 | 0.05 | 7.6 | 92.0 | 0.4 | -0.32 | 1.14 | 0.76 | 0.78 | — | 19554 | 2334 | 39 | 0 | 78 | 0 | 0 | logfile |
✔ | 6VAK | 21141 | 2023-02-24 | 2019-12-17 | 3.48 | 3.85 | — | 3.8 | 0.004 | 0.77 | 0.0 | 0.04 | 14.36 | 0.00 | 2.047 | 7.47 | 2.96 | 8.2 | 91.8 | 0.0 | -2.80 | 0.73 | 0.81 | 3.28 | 3.8 | 0.002 | 0.58 | 0.0 | 0.03 | 16.38 | 0.00 | 2.190 | 5.71 | 0.72 | 5.9 | 94.1 | 0.0 | 2.31 | 0.55 | 0.70 | 0.82 | 2.80 | 22781 | 2992 | 11 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DW2 | 27749 | 2023-02-19 | 2022-07-30 | 4.11 | 4.56 | 4.33 | 4.3 | 0.003 | 0.80 | 0.0 | 0.05 | 16.97 | 0.01 | 2.127 | 18.20 | 0.48 | 6.2 | 93.7 | 0.1 | -0.94 | 0.76 | 0.78 | — | 4.3 | 0.003 | 0.69 | 0.0 | 0.05 | 14.00 | 0.00 | 2.128 | 16.79 | 0.00 | 7.3 | 92.6 | 0.1 | -0.80 | 1.06 | 0.77 | 0.80 | — | 9364 | 1223 | 7 | 0 | 3 | 0 | 0 | logfile |
✔ | 7XMG | 33296 | 2023-02-20 | 2022-04-25 | 3.09 | 3.36 | 3.11 | 3.4 | 0.007 | 0.83 | 1.0 | 0.13 | 16.99 | 0.01 | 2.017 | 20.33 | 4.46 | 7.3 | 92.4 | 0.3 | -2.84 | 0.50 | 0.67 | 1.81 | 3.4 | 0.003 | 0.70 | 0.0 | 0.04 | 17.62 | 0.00 | 2.096 | 12.11 | 0.23 | 5.4 | 94.6 | 0.0 | -0.49 | 0.56 | 0.55 | 0.76 | 1.69 | 11692 | 1431 | 7 | 0 | 10 | 0 | 0 | logfile |
✔ | 7T3i | 25659 | 2023-02-25 | 2021-12-08 | 4.3 | 4.36 | — | 4.3 | 0.003 | 0.59 | 0.0 | 0.04 | 12.51 | 0.00 | 2.101 | 11.21 | 0.07 | 5.7 | 94.1 | 0.2 | 0.58 | 0.80 | 0.82 | — | 4.3 | 0.004 | 0.61 | 0.0 | 0.04 | 13.00 | 0.00 | 2.106 | 12.83 | 0.00 | 7.0 | 92.8 | 0.2 | 0.67 | 1.13 | 0.80 | 0.83 | — | 26799 | 3437 | 12 | 0 | 36 | 0 | 0 | logfile |
✔ | 6SoF | 10273 | 2023-02-27 | 2019-08-29 | 4.3 | 4.23 | 4.20 | 4.1 | 0.006 | 0.93 | 0.0 | 0.05 | 14.59 | 0.01 | 2.017 | 10.51 | 0.62 | 17.7 | 82.3 | 0.0 | -5.47 | 0.82 | 0.72 | — | 4.1 | 0.003 | 0.67 | 0.0 | 0.04 | 13.36 | 0.00 | 1.934 | 15.84 | 0.00 | 15.3 | 84.7 | 0.0 | -3.90 | 1.45 | 0.82 | 0.72 | — | 30333 | 1966 | 12 | 0 | 0 | 0 | 14564 | logfile |
✔ | 7MQo | 23949 | 2023-02-19 | 2021-05-06 | 3.4 | 3.62 | 3.43 | 3.7 | 0.004 | 0.69 | 0.0 | 0.05 | 14.78 | 0.01 | 2.030 | 10.26 | 0.17 | 13.1 | 86.7 | 0.2 | -2.87 | 0.67 | 0.75 | 1.17 | 3.7 | 0.003 | 0.65 | 0.0 | 0.05 | 16.92 | 0.00 | 2.124 | 10.78 | 0.25 | 13.6 | 86.3 | 0.1 | -2.71 | 0.49 | 0.68 | 0.79 | 1.51 | 10642 | 1288 | 10 | 0 | 16 | 0 | 0 | logfile |
✔ | 7XJ3 | 33218 | 2023-02-22 | 2022-04-14 | 3.54 | 3.75 | 3.55 | 3.7 | 0.019 | 1.03 | 0.0 | 0.04 | 16.43 | 0.01 | 2.242 | 12.56 | 6.79 | 8.8 | 91.2 | 0.0 | -3.52 | 0.69 | 0.84 | 1.76 | 3.8 | 0.002 | 0.57 | 0.0 | 0.04 | 16.37 | 0.00 | 2.283 | 5.90 | 0.46 | 4.1 | 95.9 | 0.0 | 0.42 | 1.21 | 0.65 | 0.80 | 1.22 | 18493 | 2428 | 8 | 0 | 14 | 0 | 0 | logfile |
✔ | 7KiP | 22889 | 2023-02-27 | 2020-10-24 | 3.39 | 4.00 | 3.47 | 3.9 | 0.009 | 0.90 | 0.0 | 0.06 | 8.62 | 0.01 | 2.290 | 1.86 | 0.00 | 7.9 | 92.1 | 0.1 | -4.05 | 0.83 | 0.84 | 3.42 | 3.9 | 0.003 | 0.55 | 0.0 | 0.04 | 11.32 | 0.00 | 2.214 | 4.09 | 0.13 | 5.8 | 94.2 | 0.0 | -1.42 | 0.57 | 0.85 | 0.87 | 2.65 | 30612 | 3576 | 69 | 0 | 222 | 0 | 0 | logfile |
✔ | 3JD3 | 6632 | 2023-02-24 | 2016-03-28 | 3.6 | 3.38 | — | 3.5 | 0.011 | 1.02 | 0.0 | 0.06 | 11.40 | 0.01 | 2.125 | 18.17 | 0.00 | 10.7 | 89.3 | 0.0 | -5.32 | 0.81 | 0.80 | 2.72 | 3.2 | 0.003 | 0.65 | 0.0 | 0.04 | 15.34 | 0.00 | 2.140 | 12.61 | 0.28 | 4.0 | 96.0 | 0.0 | -0.42 | 1.00 | 0.81 | 0.83 | 2.27 | 24006 | 2976 | 12 | 0 | 18 | 0 | 0 | logfile |
✔ | 8DN8 | 27556 | 2023-02-20 | 2022-07-10 | 3.7 | 4.03 | 3.79 | 4.0 | 0.003 | 0.61 | 0.0 | 0.04 | 13.76 | 0.00 | 2.157 | 9.82 | 0.00 | 6.0 | 94.0 | 0.0 | -0.14 | 0.72 | 0.82 | 1.16 | 3.9 | 0.003 | 0.66 | 0.0 | 0.04 | 16.11 | 0.00 | 2.185 | 11.45 | 0.60 | 5.6 | 94.4 | 0.0 | -0.15 | 0.57 | 0.72 | 0.81 | 1.19 | 10638 | 1300 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 8GSZ | 34244 | 2023-02-17 | 2022-09-07 | 3.65 | 3.14 | 3.68 | 3.8 | 0.006 | 0.86 | 0.0 | 0.05 | 15.61 | 0.01 | 2.241 | 12.76 | 0.39 | 2.7 | 97.3 | 0.0 | -5.38 | 0.62 | 0.76 | 1.72 | 3.8 | 0.003 | 0.69 | 0.0 | 0.04 | 17.49 | 0.00 | 2.123 | 9.67 | 0.39 | 4.0 | 96.0 | 0.0 | -0.70 | 0.76 | 0.62 | 0.76 | 0.90 | 4870 | 620 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TJS | 25930 | 2023-02-24 | 2022-01-17 | 3.2 | 3.47 | 3.27 | 3.4 | 0.003 | 0.60 | 0.0 | 0.05 | 12.62 | 0.00 | 1.901 | 1.77 | 0.00 | 1.5 | 98.5 | 0.0 | 0.55 | 0.78 | 0.85 | 3.14 | 3.4 | 0.006 | 0.65 | 0.0 | 0.05 | 15.00 | 0.00 | 1.883 | 5.67 | 0.16 | 2.6 | 97.4 | 0.0 | 0.79 | 0.54 | 0.73 | 0.86 | 2.54 | 23539 | 3102 | 12 | 0 | 8 | 0 | 0 | logfile |
✘ | 7F3T | 31440 | 2023-02-17 | 2021-06-17 | 3.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5632 | 660 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7FiY | 31606 | 2023-02-19 | 2021-08-01 | 3.4 | 3.64 | — | 3.6 | 0.004 | 0.82 | 0.0 | 0.06 | 8.14 | 0.01 | 2.275 | 3.69 | 0.00 | 2.6 | 97.4 | 0.0 | -1.10 | 0.67 | 0.75 | 2.44 | 3.6 | 0.003 | 0.58 | 0.0 | 0.04 | 14.14 | 0.00 | 2.105 | 9.47 | 0.31 | 2.5 | 97.5 | 0.0 | 1.25 | 1.71 | 0.70 | 0.80 | 2.00 | 9367 | 1152 | 7 | 0 | 6 | 0 | 0 | logfile |