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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7SoF | 25269 | 2023-12-07 | 2021-10-29 | 3.6 | 3.79 | 3.59 | 3.8 | 0.010 | 1.31 | 1.0 | 0.08 | 8.43 | 0.01 | 2.563 | 1.12 | 0.00 | 3.4 | 96.6 | 0.0 | 0.64 | 0.67 | 0.78 | 4.10 | 3.8 | 0.004 | 0.67 | 0.0 | 0.05 | 12.74 | 0.00 | 2.156 | 6.31 | 0.29 | 4.4 | 95.6 | 0.0 | -0.16 | 1.38 | 0.69 | 0.82 | 3.69 | 3735 | 488 | 5 | 0 | 9 | 0 | 0 | logfile |
✘ | 7YMJ | 33930 | 2023-12-07 | 2022-07-28 | 3.35 | 3.65 | 3.24 | 3.6 | 0.005 | 0.95 | 0.0 | 0.05 | 14.75 | 0.01 | 2.349 | 1.30 | 0.00 | 3.6 | 96.4 | 0.0 | -3.45 | 0.64 | 0.83 | 2.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3085 | 396 | 3 | 0 | 1 | 0 | 0 | logfile |
✘ | 7N6B | 24206 | 2023-12-07 | 2021-06-08 | 2.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5942 | 757 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7XCK | 33123 | 2023-12-09 | 2022-03-24 | 2.5 | 2.98 | 2.85 | 3.0 | 0.004 | 0.71 | 0.0 | 0.05 | 12.67 | 0.01 | 2.179 | 4.89 | 0.00 | 4.6 | 95.3 | 0.1 | -0.89 | 0.61 | 0.81 | 4.36 | 3.0 | 0.003 | 0.66 | 0.0 | 0.05 | 15.28 | 0.01 | 2.205 | 5.91 | 2.63 | 6.0 | 94.0 | 0.0 | -0.78 | 1.20 | 0.57 | 0.82 | 3.93 | 5488 | 704 | 4 | 0 | 3 | 0 | 0 | logfile |
✔ | 7WS6 | 32748 | 2023-12-07 | 2022-01-28 | 3.8 | 4.15 | — | 4.0 | 0.004 | 0.68 | 0.0 | 0.05 | 13.45 | 0.00 | 2.282 | 11.98 | 0.00 | 4.7 | 95.3 | 0.0 | -1.37 | 0.67 | 0.73 | 2.81 | 4.0 | 0.004 | 0.78 | 0.0 | 0.04 | 16.21 | 0.00 | 2.246 | 14.14 | 1.03 | 4.9 | 95.1 | 0.0 | -1.31 | 0.66 | 0.67 | 0.74 | 2.39 | 3531 | 451 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7XDA | 33140 | 2023-12-10 | 2022-03-26 | 2.98 | 3.15 | 3.14 | 3.1 | 0.005 | 0.54 | 0.0 | 0.04 | 16.34 | 0.00 | 1.978 | 4.13 | 1.85 | 6.3 | 93.6 | 0.1 | -3.63 | 0.66 | 0.84 | 3.84 | 3.1 | 0.003 | 0.57 | 0.0 | 0.04 | 16.97 | 0.00 | 2.003 | 4.70 | 2.89 | 4.5 | 95.4 | 0.1 | -0.78 | 0.65 | 0.65 | 0.86 | 3.88 | 15729 | 1071 | 5 | 0 | 0 | 0 | 7646 | logfile |
✔ | 7TAS | 25783 | 2023-12-07 | 2021-12-21 | 3.2 | 3.49 | 3.25 | 3.4 | 0.013 | 1.50 | 0.0 | 0.09 | 11.42 | 0.01 | 2.452 | 3.63 | 1.69 | 3.9 | 96.1 | 0.0 | -1.01 | 0.68 | 0.83 | 4.31 | 3.4 | 0.004 | 0.70 | 0.0 | 0.04 | 13.55 | 0.00 | 2.250 | 5.62 | 0.34 | 4.4 | 95.6 | 0.0 | -0.26 | 0.53 | 0.66 | 0.86 | 4.27 | 3147 | 417 | 4 | 0 | 3 | 0 | 0 | logfile |
✔ | 6QA9 | 4482 | 2023-12-09 | 2018-12-19 | 4.1 | 4.29 | 4.14 | 4.1 | 0.007 | 1.21 | 0.0 | 1.03 | 11.60 | 0.01 | 2.226 | 7.67 | 0.44 | 12.0 | 88.0 | 0.1 | -3.97 | 0.75 | 0.78 | — | 4.1 | 0.008 | 1.72 | 0.0 | 0.31 | 13.13 | 0.01 | 2.077 | 19.36 | 0.01 | 10.2 | 89.7 | 0.0 | -1.45 | 1.04 | 0.75 | 0.79 | — | 65403 | 8091 | 58 | 0 | 19 | 0 | 0 | logfile |
✔ | 7YNS | 33970 | 2023-12-07 | 2022-07-31 | 3.0 | 2.79 | 2.25 | 3.1 | 0.009 | 0.66 | 0.0 | 0.06 | 11.51 | 0.00 | 2.233 | 10.18 | 0.00 | 5.1 | 94.9 | 0.0 | -3.28 | 0.51 | 0.87 | 6.08 | 3.1 | 0.005 | 0.67 | 0.0 | 0.05 | 13.74 | 0.00 | 2.224 | 6.72 | 0.78 | 5.6 | 94.4 | 0.0 | -2.14 | 0.91 | 0.49 | 0.88 | 4.79 | 2526 | 366 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EJi | 28183 | 2023-12-09 | 2022-09-16 | 3.81 | 4.24 | 3.86 | 4.0 | 0.022 | 1.85 | 3.0 | 0.15 | 10.17 | 0.02 | 2.309 | 3.30 | 0.00 | 4.1 | 95.9 | 0.0 | 0.23 | 0.80 | 0.80 | 2.42 | 4.0 | 0.004 | 0.79 | 0.0 | 0.04 | 14.07 | 0.00 | 2.144 | 13.99 | 0.36 | 6.1 | 93.9 | 0.0 | -0.16 | 2.72 | 0.79 | 0.79 | 1.90 | 11023 | 1257 | 32 | 0 | 78 | 0 | 0 | logfile |
✔ | 7XA9 | 33088 | 2023-12-09 | 2022-03-17 | 2.84 | 3.16 | 2.86 | 3.2 | 0.010 | 1.33 | 0.0 | 0.07 | 16.62 | 0.01 | 1.938 | 6.67 | 0.17 | 3.6 | 96.4 | 0.0 | -5.02 | 0.63 | 0.83 | 3.59 | 3.2 | 0.007 | 0.74 | 0.0 | 0.05 | 17.05 | 0.00 | 1.904 | 12.75 | 2.43 | 2.7 | 97.3 | 0.0 | 0.37 | 2.64 | 0.66 | 0.86 | 3.77 | 11028 | 1404 | 4 | 0 | 10 | 0 | 0 | logfile |
✔ | 7WSA | 32752 | 2023-12-08 | 2022-01-28 | 3.0 | 3.42 | — | 3.4 | 0.004 | 0.78 | 0.0 | 0.05 | 13.94 | 0.01 | 2.185 | 11.53 | 0.00 | 2.9 | 97.1 | 0.0 | -1.59 | 0.76 | 0.71 | 2.04 | 3.4 | 0.003 | 0.76 | 0.0 | 0.04 | 15.57 | 0.00 | 2.185 | 13.01 | 1.85 | 3.2 | 96.8 | 0.0 | 0.51 | 0.73 | 0.78 | 0.76 | 1.86 | 6567 | 796 | 4 | 0 | 7 | 0 | 0 | logfile |
✔ | 8DZJ | 27801 | 2023-12-08 | 2022-08-07 | 2.9 | 3.60 | 2.84 | 3.0 | 0.004 | 0.60 | 0.0 | 0.04 | 20.83 | 0.00 | 2.209 | 12.65 | 0.38 | 1.5 | 98.5 | 0.0 | 0.94 | 0.77 | 0.71 | 3.07 | 3.0 | 0.003 | 0.62 | 0.0 | 0.04 | 21.01 | 0.00 | 2.147 | 15.38 | 1.69 | 1.8 | 98.2 | 0.0 | 1.36 | 0.57 | 0.85 | 0.81 | 2.80 | 9030 | 613 | 6 | 190 | 1 | 0 | 0 | logfile |
✘ | 6ZZY | 11589 | 2023-12-08 | 2020-08-05 | 3.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 54609 | 4594 | 44 | 0 | 379 | 0 | 0 | logfile |
✔ | 8ERQ | 28558 | 2023-12-07 | 2022-10-12 | 3.3 | 3.48 | 3.22 | 3.5 | 0.010 | 1.32 | 0.0 | 0.07 | 10.04 | 0.01 | 2.265 | 2.12 | 0.95 | 3.8 | 96.2 | 0.0 | 0.38 | 0.63 | 0.76 | 4.07 | 3.5 | 0.003 | 0.61 | 0.0 | 0.04 | 13.65 | 0.00 | 2.273 | 3.92 | 0.32 | 2.9 | 97.1 | 0.0 | -0.10 | 0.99 | 0.64 | 0.83 | 3.52 | 3178 | 423 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 7WWK | 32868 | 2023-12-08 | 2022-02-13 | 3.4 | 3.74 | — | 3.6 | 0.005 | 0.71 | 0.0 | 0.05 | 12.68 | 0.00 | 2.206 | 7.38 | 0.00 | 4.1 | 95.7 | 0.2 | -0.93 | 0.74 | 0.87 | 3.33 | 3.6 | 0.003 | 0.58 | 0.0 | 0.04 | 14.84 | 0.00 | 2.179 | 7.53 | 0.28 | 5.2 | 94.8 | 0.0 | -0.78 | 0.38 | 0.75 | 0.90 | 2.86 | 6620 | 845 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8HBH | 34632 | 2023-12-08 | 2022-10-28 | 3.1 | 3.30 | — | 3.3 | 0.008 | 0.84 | 0.0 | 0.05 | 15.29 | 0.01 | 2.007 | 10.23 | 0.90 | 3.2 | 96.8 | 0.0 | -0.10 | 0.68 | 0.78 | 2.79 | 3.3 | 0.004 | 0.60 | 0.0 | 0.04 | 15.61 | 0.00 | 1.072 | 9.94 | 0.34 | 2.1 | 97.9 | 0.0 | 0.53 | 0.27 | 0.72 | 0.82 | 2.54 | 8502 | 1099 | 4 | 0 | 5 | 0 | 0 | logfile |
✔ | 7XRP | 33416 | 2023-12-07 | 2022-05-11 | 3.88 | 4.07 | 3.83 | 4.0 | 0.008 | 1.14 | 0.0 | 0.08 | 14.36 | 0.02 | 2.261 | 4.57 | 0.45 | 8.4 | 91.6 | 0.0 | -4.63 | 0.53 | 0.80 | 2.30 | 4.0 | 0.004 | 0.72 | 0.0 | 0.04 | 15.93 | 0.00 | 2.175 | 14.21 | 0.45 | 7.4 | 92.6 | 0.0 | -2.97 | 0.69 | 0.53 | 0.80 | 1.99 | 4129 | 515 | 5 | 0 | 4 | 0 | 0 | logfile |
✔ | 7TZ6 | 26203 | 2023-12-09 | 2022-02-15 | 2.88 | 3.27 | — | 3.2 | 0.005 | 0.77 | 0.0 | 0.04 | 12.16 | 0.01 | 2.038 | 1.51 | 0.26 | 2.6 | 97.3 | 0.0 | 0.43 | 0.65 | 0.83 | 3.78 | 3.2 | 0.003 | 0.57 | 0.0 | 0.04 | 15.57 | 0.00 | 1.878 | 4.41 | 1.44 | 2.9 | 97.1 | 0.0 | 1.60 | 0.72 | 0.67 | 0.86 | 3.20 | 64906 | 4126 | 28 | 0 | 10 | 0 | 32164 | logfile |
✔ | 8CXM | 27060 | 2023-12-08 | 2022-05-21 | 3.21 | 3.69 | 3.21 | 3.6 | 0.003 | 0.50 | 0.0 | 0.03 | 14.84 | 0.00 | 2.093 | 8.38 | 0.06 | 4.1 | 95.9 | 0.0 | 3.68 | 0.56 | 0.87 | 1.34 | 3.5 | 0.003 | 0.53 | 0.0 | 0.03 | 16.26 | 0.00 | 2.108 | 6.36 | 0.15 | 3.9 | 96.1 | 0.0 | 4.62 | 1.14 | 0.58 | 0.89 | 1.41 | 109560 | 14685 | 55 | 0 | 0 | 0 | 0 | logfile |