Table showing results for June 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7A6E	11671	2021-06-02	2020-08-25	3.6	2.83	—	3.6	0.045	1.02	0.0	0.23	13.44	0.01	1.357	23.64	1.72	5.3	94.7	0.0	-2.92	0.57	0.73	1.42	3.6	0.005	0.82	0.0	0.04	15.62	0.00	2.162	15.71	0.15	4.5	95.5	0.0	0.34	1.40	0.59	0.76	1.49	12757	1596	4	0	13	0	0	logfile
✔	7A69	11667	2021-06-02	2020-08-25	3.2	3.36	—	3.3	0.043	1.16	0.0	0.25	14.39	0.01	2.042	11.63	4.42	4.7	95.2	0.1	-2.83	0.63	0.76	2.19	3.3	0.006	0.91	0.0	0.07	15.78	0.00	1.995	13.18	0.37	4.7	95.3	0.0	0.33	1.91	0.67	0.83	2.05	12637	1596	4	0	9	0	0	logfile
✔	7M19	23616	2021-06-02	2021-03-12	3.69	3.92	3.50	3.8	0.010	1.03	0.0	0.05	16.06	0.00	2.231	3.80	0.06	3.9	96.1	0.0	-0.78	0.68	0.80	1.98	3.8	0.003	0.63	0.0	0.04	16.33	0.00	2.124	8.41	0.69	4.6	95.4	0.0	0.39	1.22	0.69	0.80	1.64	16039	1878	12	0	19	0	0	logfile
✔	7L3N	23156	2021-06-03	2020-12-18	3.27	3.85	3.38	3.5	0.005	0.74	0.0	0.05	13.29	0.01	2.041	9.73	0.04	5.0	95.0	0.0	-0.76	0.75	0.70	0.74	3.6	0.003	0.64	0.0	0.05	15.05	0.00	2.116	10.28	0.19	2.7	97.3	0.0	0.46	0.94	0.81	0.84	2.19	24118	3056	11	0	22	0	0	logfile
✔	7LAA	23246	2021-06-05	2021-01-06	3.42	3.63	3.49	3.6	0.013	1.92	9.0	0.10	13.69	0.01	2.524	0.34	1.87	7.0	92.5	0.5	-2.08	0.66	0.70	2.85	3.6	0.006	0.73	0.0	0.05	14.83	0.00	1.814	10.52	0.40	8.6	91.4	0.0	-1.51	0.87	0.68	0.75	2.32	45934	3002	25	0	57	0	22222	logfile
✔	7K19	22622	2021-06-03	2020-09-07	4.3	4.44	—	4.3	0.006	1.10	1.0	0.06	17.53	0.01	2.038	8.49	0.65	12.7	87.0	0.3	-4.91	0.79	0.77	—	4.3	0.003	0.72	0.0	0.04	16.05	0.00	2.136	11.14	0.03	10.6	89.4	0.0	-1.24	0.68	0.78	0.75	—	29158	3569	4	48	0	0	0	logfile
✘	7K1B	22623	2021-06-03	2020-09-07	4.3	4.45	—	4.3	0.005	1.05	0.0	0.06	17.36	0.01	2.268	7.62	0.55	12.2	87.5	0.3	-4.94	0.79	0.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29321	3589	4	48	0	0	0	logfile
✔	7K1J	22624	2021-06-04	2020-09-07	3.9	3.96	—	3.9	0.010	1.24	0.0	0.07	17.63	0.01	2.066	7.79	1.09	14.5	85.0	0.5	-5.24	0.68	0.71	1.17	3.9	0.004	0.78	0.0	0.04	18.28	0.01	2.064	11.62	0.27	10.7	89.3	0.0	-1.98	1.76	0.68	0.71	0.75	38040	4600	7	74	0	0	0	logfile
✔	7K1K	22625	2021-06-04	2020-09-07	4.1	4.21	—	4.1	0.008	1.12	0.0	0.06	17.45	0.01	2.224	7.18	0.91	14.0	85.5	0.4	-5.07	0.73	0.74	—	4.1	0.003	0.72	0.0	0.04	16.12	0.01	2.086	11.09	0.00	11.8	88.1	0.1	-1.64	1.34	0.72	0.72	—	38243	4620	7	74	0	0	0	logfile
✔	7K1N	22626	2021-06-04	2020-09-08	3.9	4.03	—	3.9	0.007	1.06	2.0	0.06	16.96	0.01	2.179	6.04	0.78	13.2	86.4	0.4	-4.97	0.75	0.78	1.02	3.9	0.003	0.70	0.0	0.04	17.94	0.01	2.119	9.72	0.33	10.9	89.1	0.0	-1.48	0.57	0.75	0.77	0.66	39521	4779	7	74	0	0	0	logfile
✘	6WMP	21850	2021-06-03	2020-04-21	2.98	3.16	—	3.1	0.011	0.93	0.0	0.06	18.47	0.01	1.965	9.38	12.01	13.6	86.2	0.2	-5.30	0.72	0.83	2.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22296	2879	9	47	3	0	0	logfile
✔	7K0Y	22618	2021-06-04	2020-09-06	3.7	3.80	—	3.7	0.009	1.18	2.0	0.06	17.54	0.01	1.890	6.88	1.27	14.9	84.6	0.5	-5.42	0.74	0.76	1.42	3.7	0.006	0.82	0.0	0.04	18.22	0.01	1.586	10.59	0.14	10.1	89.8	0.1	-1.80	0.52	0.73	0.75	0.83	39835	4814	7	74	0	0	0	logfile
✔	7LKP	23409	2021-06-02	2021-02-02	3.27	3.86	—	3.8	0.034	1.12	0.0	0.18	17.41	0.01	1.954	19.87	0.60	5.7	94.3	0.1	-0.89	0.62	0.74	1.42	3.8	0.004	0.72	0.0	0.04	17.98	0.00	2.142	11.90	0.42	4.5	95.4	0.1	0.17	1.20	0.73	0.82	1.97	15789	1941	4	0	29	0	0	logfile
✘	6WM2	21847	2021-06-02	2020-04-20	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	73243	9171	56	0	63	0	0	logfile
✔	7K8W	22733	2021-06-03	2020-09-27	3.6	4.04	—	3.9	0.008	1.02	2.0	0.06	12.44	0.01	1.483	19.28	0.26	6.1	93.8	0.1	-1.54	0.73	0.74	1.34	3.9	0.006	0.74	0.0	0.04	14.63	0.01	2.100	13.06	0.26	5.7	94.3	0.0	-0.39	1.43	0.73	0.75	0.88	26499	3403	23	0	60	0	0	logfile
✔	7K0o	22605	2021-06-02	2020-09-04	3.1	3.53	—	3.5	0.006	0.80	0.0	0.05	13.66	0.00	2.161	5.84	0.21	2.6	97.4	0.0	0.95	0.70	0.82	3.00	3.5	0.003	0.55	0.0	0.04	14.83	0.00	2.186	5.84	0.26	2.6	97.4	0.0	1.40	1.07	0.67	0.81	3.00	18558	2342	14	0	14	0	0	logfile
✘	7K0N	22604	2021-06-02	2020-09-04	3.1	3.55	—	3.5	0.005	0.74	0.0	0.04	14.62	0.00	2.227	6.22	0.32	2.5	97.5	0.0	0.72	0.73	0.82	2.88	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18470	2340	14	0	18	0	0	logfile
✔	7K0P	22606	2021-06-02	2020-09-04	3.1	3.68	—	3.6	0.006	0.77	0.0	0.04	14.41	0.00	2.183	5.21	0.00	2.5	97.5	0.0	0.92	0.69	0.82	3.20	3.6	0.002	0.48	0.0	0.04	15.17	0.00	2.165	5.19	0.21	2.0	98.0	0.0	1.57	0.31	0.68	0.82	2.59	18572	2342	14	0	15	0	0	logfile
✔	7K0M	22602	2021-06-02	2020-09-04	2.9	3.38	—	3.3	0.005	0.74	0.0	0.04	13.68	0.00	2.218	4.67	0.00	2.3	97.7	0.0	1.05	0.62	0.79	3.49	3.3	0.002	0.45	0.0	0.04	15.15	0.00	2.208	5.29	0.93	1.7	98.3	0.0	1.50	0.40	0.63	0.80	2.92	18578	2342	14	0	16	0	0	logfile
✘	7K8Z	22736	2021-06-03	2020-09-27	3.5	4.17	—	4.0	0.007	0.82	0.0	0.05	12.39	0.00	2.103	12.57	1.06	4.5	95.4	0.1	-0.73	0.78	0.78	2.11	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	26015	3335	25	0	69	0	0	logfile

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