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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6B44 | 7048 | 2022-05-15 | 2017-09-25 | 2.9 | 3.00 | — | 3.0 | 0.006 | 0.99 | 0.0 | 0.06 | 14.77 | 0.01 | 2.237 | 5.60 | 0.43 | 11.4 | 88.6 | 0.0 | -4.46 | 0.65 | 0.77 | 3.33 | 3.0 | 0.004 | 0.67 | 0.0 | 0.04 | 17.23 | 0.00 | 2.122 | 10.68 | 2.54 | 9.2 | 90.8 | 0.0 | -1.84 | 0.99 | 0.65 | 0.79 | 2.64 | 22681 | 2879 | 12 | 114 | 0 | 0 | 0 | logfile |
✔ | 3JAC | 6343 | 2022-05-14 | 2015-06-05 | 4.8 | 6.42 | — | 9.4 | 0.007 | 1.81 | 3.0 | 0.07 | 10.64 | 0.03 | 1.020 | 57.64 | 4.17 | 5.0 | 90.3 | 4.8 | 1.36 | 0.42 | 0.40 | — | 9.1 | 0.012 | 1.72 | 0.0 | 0.06 | 13.52 | 0.01 | 1.934 | 77.83 | 0.00 | 26.2 | 72.4 | 1.4 | -5.34 | 3.68 | 0.54 | 0.61 | — | 15741 | 1716 | 3 | 0 | 1038 | 0 | 0 | logfile |
✔ | 6B45 | 7049 | 2022-05-14 | 2017-09-25 | 3.5 | 3.59 | — | 3.6 | 0.006 | 1.05 | 0.0 | 0.06 | 13.14 | 0.01 | 2.240 | 6.58 | 0.65 | 12.3 | 87.6 | 0.1 | -5.05 | 0.62 | 0.71 | 2.69 | 3.6 | 0.009 | 1.02 | 0.0 | 0.04 | 15.21 | 0.01 | 2.123 | 15.63 | 0.11 | 10.5 | 89.4 | 0.1 | -2.90 | 1.01 | 0.63 | 0.71 | 2.10 | 21547 | 2879 | 10 | 60 | 0 | 0 | 0 | logfile |
✔ | 6B48 | 7052 | 2022-05-15 | 2017-09-25 | 3.6 | 3.85 | — | 3.9 | 0.007 | 0.98 | 1.0 | 0.06 | 11.90 | 0.01 | 2.223 | 6.15 | 0.10 | 12.1 | 87.8 | 0.1 | -4.93 | 0.73 | 0.79 | 2.55 | 3.9 | 0.008 | 0.89 | 1.0 | 0.04 | 14.63 | 0.00 | 2.145 | 12.44 | 0.36 | 8.9 | 91.1 | 0.0 | -2.09 | 1.05 | 0.73 | 0.77 | 1.71 | 22333 | 2976 | 11 | 60 | 0 | 0 | 0 | logfile |
✔ | 6Y1Z | 10673 | 2022-05-14 | 2020-02-14 | 2.82 | 3.48 | — | 3.3 | 0.006 | 0.62 | 0.0 | 0.24 | 14.03 | 0.00 | 2.325 | 3.51 | 2.49 | 2.4 | 97.6 | 0.0 | -1.37 | 0.66 | 0.79 | 2.66 | 3.3 | 0.003 | 0.87 | 0.0 | 0.12 | 16.05 | 0.00 | 2.093 | 4.80 | 2.82 | 2.2 | 97.8 | 0.0 | 1.11 | 0.56 | 0.58 | 0.72 | 2.46 | 16610 | 1930 | 10 | 0 | 35 | 0 | 0 | logfile |
✔ | 6RWB | 10037 | 2022-05-15 | 2019-06-04 | 3.25 | 3.23 | — | 3.2 | 0.006 | 0.99 | 0.0 | 0.05 | 10.24 | 0.01 | 2.253 | 4.69 | 0.36 | 9.9 | 90.1 | 0.0 | -4.08 | 0.81 | 0.80 | 2.59 | 3.1 | 0.004 | 0.67 | 0.0 | 0.04 | 15.37 | 0.00 | 2.137 | 9.82 | 0.36 | 9.1 | 90.9 | 0.0 | -0.13 | 1.29 | 0.83 | 0.85 | 2.08 | 75405 | 9365 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 5NJT | 3656 | 2022-05-16 | 2017-03-29 | 3.8 | 4.18 | 4.07 | 4.1 | 0.008 | 1.18 | 0.0 | 0.06 | 17.85 | 0.01 | 1.178 | 8.97 | 1.58 | 14.2 | 85.2 | 0.6 | -5.34 | 0.76 | 0.78 | 1.08 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 133097 | 5596 | 51 | 4579 | 0 | 0 | 0 | logfile |
✔ | 5KYH | 8298 | 2022-05-17 | 2016-07-21 | 4.0 | 3.99 | — | 4.2 | 0.014 | 1.82 | 0.0 | 0.11 | 11.44 | 0.01 | 1.692 | 34.34 | 3.90 | 2.5 | 96.2 | 1.3 | -0.68 | 0.47 | 0.78 | — | 4.1 | 0.003 | 0.75 | 0.0 | 0.05 | 15.12 | 0.00 | 2.070 | 10.40 | 0.35 | 5.4 | 94.6 | 0.0 | 0.13 | 1.73 | 0.47 | 0.79 | — | 38892 | 5082 | 21 | 0 | 0 | 0 | 0 | logfile |
✔ | 5G5L | 3439 | 2022-05-17 | 2016-05-26 | 4.8 | 5.08 | — | 4.8 | 0.010 | 1.38 | 14.0 | 0.09 | 16.60 | 0.01 | 0.675 | 31.29 | 7.76 | 6.0 | 92.2 | 1.8 | -2.38 | 0.81 | 0.71 | — | 4.8 | 0.003 | 0.73 | 0.0 | 0.04 | 13.45 | 0.00 | 2.016 | 17.49 | 0.00 | 4.2 | 95.8 | 0.1 | 0.33 | 3.24 | 0.85 | 0.83 | — | 37349 | 4686 | 20 | 0 | 7 | 0 | 0 | logfile |
✔ | 6QM4 | 4587 | 2022-05-13 | 2019-02-01 | 3.8 | 3.88 | 3.83 | 3.8 | 0.007 | 0.99 | 0.0 | 0.05 | 15.63 | 0.01 | 2.242 | 3.99 | 0.00 | 4.8 | 95.2 | 0.0 | -5.94 | 0.61 | 0.79 | 1.31 | 3.9 | 0.007 | 0.80 | 0.0 | 0.04 | 17.33 | 0.01 | 2.122 | 9.70 | 0.44 | 4.0 | 96.0 | 0.0 | 0.63 | 0.71 | 0.63 | 0.79 | 1.37 | 10580 | 1308 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NQ1 | 0478 | 2022-05-13 | 2019-01-18 | 3.5 | 3.57 | — | 3.5 | 0.008 | 0.97 | 0.0 | 0.06 | 14.33 | 0.01 | 2.298 | 3.78 | 0.18 | 5.2 | 94.8 | 0.0 | -5.53 | 0.59 | 0.82 | 3.36 | 3.5 | 0.004 | 0.71 | 0.0 | 0.04 | 16.06 | 0.01 | 2.054 | 10.17 | 0.36 | 5.3 | 94.7 | 0.0 | 0.88 | 1.29 | 0.58 | 0.83 | 1.98 | 10046 | 1242 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SJF | 10216 | 2022-05-15 | 2019-08-13 | 3.9 | 4.09 | — | 3.9 | 0.003 | 0.57 | 0.0 | 0.04 | 13.04 | 0.01 | 2.307 | 4.48 | 2.98 | 2.0 | 98.0 | 0.0 | -3.64 | 0.83 | 0.78 | 1.33 | 3.9 | 0.004 | 0.72 | 0.0 | 0.04 | 16.45 | 0.00 | 2.113 | 15.35 | 0.29 | 3.5 | 96.5 | 0.0 | 0.58 | 0.96 | 0.85 | 0.83 | 1.19 | 23826 | 2847 | 4 | 54 | 0 | 0 | 0 | logfile |
✔ | 6NPY | 0476 | 2022-05-12 | 2019-01-18 | 3.8 | 4.03 | — | 3.8 | 0.006 | 1.16 | 0.0 | 0.06 | 16.44 | 0.01 | 2.244 | 8.65 | 0.84 | 14.6 | 85.3 | 0.1 | -4.90 | 0.79 | 0.71 | 0.51 | 3.8 | 0.005 | 0.96 | 0.0 | 0.05 | 17.26 | 0.01 | 2.126 | 25.21 | 0.72 | 13.5 | 86.5 | 0.0 | -2.55 | 1.81 | 0.79 | 0.72 | 0.29 | 7586 | 965 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 6SJE | 10215 | 2022-05-15 | 2019-08-13 | 4.1 | 4.27 | — | 4.1 | 0.003 | 0.59 | 0.0 | 0.04 | 13.69 | 0.01 | 2.264 | 4.44 | 3.06 | 2.1 | 97.9 | 0.0 | -3.60 | 0.82 | 0.77 | — | 4.0 | 0.005 | 0.71 | 0.0 | 0.04 | 15.39 | 0.00 | 2.064 | 17.00 | 0.00 | 4.2 | 95.8 | 0.0 | 0.29 | 2.07 | 0.85 | 0.82 | — | 24115 | 2847 | 4 | 68 | 0 | 0 | 0 | logfile |
✔ | 6SJG | 10217 | 2022-05-15 | 2019-08-13 | 3.8 | 3.98 | — | 3.8 | 0.003 | 0.56 | 0.0 | 0.04 | 12.74 | 0.01 | 2.294 | 4.31 | 2.90 | 2.2 | 97.8 | 0.0 | -3.61 | 0.81 | 0.73 | 1.24 | 3.8 | 0.006 | 0.83 | 0.0 | 0.04 | 16.24 | 0.00 | 1.679 | 17.12 | 0.12 | 3.7 | 96.3 | 0.0 | 0.21 | 1.45 | 0.84 | 0.79 | 1.27 | 23826 | 2847 | 4 | 54 | 0 | 0 | 0 | logfile |
✔ | 6o1U | 0605 | 2022-05-14 | 2019-02-21 | 2.8 | 3.27 | — | 3.2 | 0.010 | 1.08 | 4.0 | 0.06 | 14.75 | 0.01 | 2.180 | 5.37 | 2.65 | 4.6 | 95.4 | 0.0 | -5.22 | 0.69 | 0.83 | 2.95 | 3.3 | 0.003 | 0.71 | 0.0 | 0.04 | 16.08 | 0.01 | 2.211 | 10.25 | 1.37 | 4.2 | 95.8 | 0.0 | 0.79 | 1.22 | 0.67 | 0.81 | 2.56 | 19612 | 2456 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SJB | 10214 | 2022-05-15 | 2019-08-13 | 3.7 | 3.91 | — | 3.7 | 0.003 | 0.58 | 0.0 | 0.04 | 13.36 | 0.01 | 2.227 | 4.48 | 2.57 | 2.3 | 97.7 | 0.0 | -3.60 | 0.82 | 0.81 | 1.93 | 3.7 | 0.009 | 0.88 | 0.0 | 0.05 | 16.73 | 0.01 | 1.987 | 17.36 | 0.99 | 5.6 | 94.4 | 0.0 | 0.18 | 2.03 | 0.85 | 0.86 | 1.95 | 24115 | 2847 | 4 | 68 | 0 | 0 | 0 | logfile |
✔ | 3J94 | 6204 | 2022-05-14 | 2014-12-05 | 4.2 | 2.69 | — | 3.1 | 0.009 | 1.96 | 0.0 | 0.07 | 15.84 | 0.01 | 1.261 | 31.36 | 5.87 | 5.0 | 93.0 | 2.0 | 2.31 | 0.83 | 0.77 | — | 2.7 | 0.004 | 0.82 | 0.0 | 0.04 | 13.92 | 0.01 | 1.560 | 18.95 | 0.00 | 5.5 | 94.0 | 0.5 | 0.45 | 2.62 | 0.85 | 0.80 | — | 21509 | 2895 | 12 | 0 | 11 | 0 | 0 | logfile |
✔ | 6HRB | 0258 | 2022-05-13 | 2018-09-26 | 4.0 | 4.20 | 3.96 | 4.0 | 0.008 | 0.96 | 0.0 | 0.05 | 9.28 | 0.01 | 2.186 | 6.75 | 0.26 | 7.2 | 92.8 | 0.0 | -4.97 | 0.74 | 0.84 | — | 4.0 | 0.003 | 0.76 | 0.0 | 0.04 | 13.56 | 0.00 | 2.132 | 15.05 | 0.18 | 4.3 | 95.7 | 0.0 | -0.40 | 1.27 | 0.74 | 0.84 | — | 10787 | 1447 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 6C9A | 7435 | 2022-05-13 | 2018-01-25 | 3.2 | 3.34 | — | 3.3 | 0.009 | 1.05 | 0.0 | 0.33 | 11.15 | 0.01 | 2.331 | 2.82 | 0.00 | 5.0 | 95.0 | 0.0 | -4.37 | 0.59 | 0.82 | 3.10 | 3.3 | 0.003 | 0.62 | 0.0 | 0.04 | 15.25 | 0.00 | 2.129 | 5.76 | 0.08 | 4.8 | 95.2 | 0.0 | 1.18 | 1.34 | 0.63 | 0.86 | 2.77 | 12182 | 1446 | 4 | 0 | 8 | 0 | 0 | logfile |