Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7K0N	22604	2022-05-14	2020-09-04	3.1	3.55	—	3.5	0.004	0.69	0.0	0.04	13.94	0.00	2.227	6.47	0.32	2.5	97.5	0.0	0.72	0.73	0.82	2.88	3.5	0.002	0.46	0.0	0.04	15.15	0.00	2.254	5.85	0.05	1.9	98.1	0.0	1.24	0.34	0.73	0.83	2.55	18470	2340	14	0	18	0	0	logfile
✔	7oo6	13006	2022-05-13	2021-05-26	3.1	2.92	2.88	3.0	0.005	0.63	0.0	0.05	10.97	0.00	2.327	9.05	0.00	1.5	98.5	0.0	2.48	0.63	0.80	2.67	3.0	0.003	0.46	0.0	0.04	13.94	0.00	2.358	7.46	0.20	1.3	98.7	0.0	2.23	1.13	0.65	0.83	2.25	14546	1827	14	0	14	0	0	logfile
✔	7S6D	24875	2022-05-13	2021-09-13	3.1	3.82	—	3.4	0.005	0.71	0.0	0.04	13.49	0.00	2.083	3.46	0.00	3.4	96.6	0.0	-0.10	0.86	0.81	3.05	3.4	0.002	0.46	0.0	0.04	14.12	0.00	2.020	5.69	0.00	3.4	96.6	0.0	0.42	1.12	0.86	0.83	2.96	46193	3112	8	0	1	0	22846	logfile
✔	6U6i	20666	2022-05-16	2019-08-29	3.12	3.43	—	3.4	0.006	0.45	0.0	0.07	11.24	0.00	2.029	6.16	0.00	7.6	92.4	0.0	-3.59	0.80	0.80	4.39	3.3	0.002	0.46	0.0	0.04	12.86	0.00	2.081	5.43	0.00	4.8	95.2	0.0	0.08	0.50	0.81	0.83	4.07	21701	1496	8	0	11	0	10337	logfile
✔	7JM9	22390	2022-05-18	2020-07-31	2.5	2.71	2.65	2.7	0.009	1.47	0.0	0.07	13.53	0.00	2.291	3.08	0.56	1.1	98.9	0.0	0.10	0.62	0.82	5.25	2.7	0.002	0.46	0.0	0.04	13.55	0.00	2.085	6.38	1.27	1.4	98.6	0.0	3.63	0.72	0.64	0.85	4.54	41136	2328	36	0	168	156	18876	logfile
✔	6X0V	21985	2022-05-12	2020-05-17	4.5	4.37	—	4.4	0.003	0.62	1.0	0.04	11.58	0.00	2.285	15.16	4.48	3.5	96.0	0.5	-2.45	0.40	0.74	—	4.4	0.002	0.46	0.0	0.04	13.09	0.00	2.230	19.17	0.00	6.0	94.0	0.0	2.59	1.22	0.40	0.75	—	1384	211	4	0	0	0	62	logfile
✔	7PW4	13674	2022-05-14	2021-10-06	3.27	3.69	—	3.5	0.003	0.69	0.0	0.15	13.19	0.00	2.030	4.61	0.00	2.8	97.2	0.0	1.69	0.79	0.82	2.05	3.5	0.003	0.47	0.0	0.04	14.56	0.00	1.893	3.95	0.12	2.8	97.2	0.0	1.75	0.90	0.80	0.85	1.98	18965	2435	5	0	199	0	0	logfile
✔	7E4T	30987	2022-05-15	2021-02-15	3.0	3.26	3.08	3.3	0.007	0.79	0.0	0.04	13.89	0.00	2.278	6.59	1.01	1.1	98.9	0.0	0.77	0.50	0.68	3.26	3.3	0.002	0.47	0.0	0.03	16.68	0.00	2.181	5.83	3.34	1.2	98.8	0.0	2.36	1.24	0.71	0.85	3.19	22276	2656	8	0	24	0	0	logfile
✔	7SFJ	25079	2022-05-12	2021-10-04	2.74	3.33	—	3.4	0.007	0.94	0.0	0.04	18.41	0.01	2.308	4.07	1.28	2.5	97.5	0.0	2.20	0.62	0.78	3.51	3.4	0.002	0.47	0.0	0.04	17.60	0.00	2.280	5.02	1.28	3.1	96.9	0.0	2.40	0.47	0.58	0.77	3.08	7377	852	9	0	24	3	0	logfile
✔	7o6Q	12740	2022-05-12	2021-04-12	1.88	2.21	—	1.9	0.010	0.71	0.0	0.05	12.80	0.01	2.115	4.83	1.25	3.2	96.8	0.0	-1.61	0.88	0.85	7.59	1.9	0.002	0.47	0.0	0.04	14.46	0.00	2.188	5.16	1.63	0.8	99.2	0.0	3.35	0.36	0.90	0.90	6.06	7999	997	8	0	0	399	0	logfile
✔	6C9i	7436	2022-05-15	2018-01-26	3.09	3.21	—	3.2	0.029	1.48	0.0	0.12	9.22	0.01	2.417	1.04	0.00	0.3	99.6	0.1	2.36	0.79	0.85	4.97	3.2	0.004	0.47	0.0	0.04	15.04	0.00	2.229	5.61	0.12	0.0	100.0	0.0	3.66	2.42	0.73	0.90	3.62	23700	3087	24	0	0	0	0	logfile
✔	7oRK	13040	2022-05-14	2021-06-06	3.1	3.05	—	3.1	0.007	0.71	2.0	0.05	13.57	0.00	1.996	5.50	1.04	3.2	96.8	0.0	0.32	0.83	0.89	4.27	3.1	0.003	0.47	0.0	0.04	14.67	0.00	1.984	6.01	0.15	2.8	97.2	0.0	0.97	0.32	0.84	0.91	4.13	18699	2182	7	36	5	48	0	logfile
✔	6ZBC	11150	2022-05-14	2020-06-08	3.1	3.91	3.31	3.6	0.007	1.02	0.0	0.05	13.80	0.00	2.449	1.08	0.00	1.3	98.7	0.0	-0.79	0.85	0.80	2.24	3.6	0.002	0.47	0.0	0.03	15.19	0.00	2.079	3.69	0.09	1.1	98.9	0.0	4.36	0.84	0.85	0.81	1.55	19534	1160	4	0	0	0	9902	logfile
✔	6ZBL	11157	2022-05-17	2020-06-08	3.6	4.39	3.70	4.0	0.014	1.20	0.0	0.07	14.69	0.01	2.400	1.54	0.00	0.7	99.3	0.0	-0.56	0.87	0.79	1.33	4.0	0.003	0.47	0.0	0.03	15.53	0.00	2.015	2.99	0.00	1.0	99.0	0.0	4.19	1.34	0.88	0.82	0.89	39074	2326	4	0	0	0	19788	logfile
✔	6UCB	20727	2022-05-16	2019-09-15	3.28	3.46	—	3.5	0.009	0.76	0.0	0.05	13.85	0.01	2.152	5.80	0.00	5.1	94.9	0.0	-3.14	0.64	0.76	2.69	3.4	0.002	0.47	0.0	0.04	14.66	0.00	2.121	9.27	0.06	3.7	96.3	0.0	0.65	0.93	0.66	0.80	2.70	32324	2044	16	0	30	0	15694	logfile
✔	7oRN	13043	2022-05-13	2021-06-06	2.8	2.83	—	2.8	0.004	0.59	1.0	0.04	12.58	0.00	1.978	4.16	0.19	2.1	97.9	0.0	1.14	0.82	0.89	4.23	2.8	0.003	0.47	0.0	0.04	15.17	0.00	1.976	5.23	0.83	2.4	97.6	0.0	1.44	0.36	0.79	0.90	3.86	14811	1700	6	35	3	92	0	logfile
✔	7D4Q	30576	2022-05-15	2020-09-24	2.74	2.99	2.80	3.0	0.009	0.78	0.0	0.04	12.13	0.00	2.254	6.42	0.67	1.4	98.6	0.0	2.70	0.47	0.71	3.84	3.0	0.003	0.48	0.0	0.03	15.53	0.00	2.196	6.27	1.13	1.4	98.6	0.0	2.53	0.44	0.69	0.87	3.86	22388	2672	8	0	24	0	0	logfile
✔	7oZU	13135	2022-05-12	2021-06-28	3.3	3.27	3.22	3.4	0.007	0.52	0.0	0.04	12.44	0.00	2.218	6.28	0.00	3.1	96.9	0.0	0.39	0.62	0.79	3.13	3.4	0.003	0.48	0.0	0.04	14.81	0.00	2.049	7.74	0.23	2.8	97.2	0.0	0.45	1.89	0.75	0.86	3.16	8408	991	6	22	2	0	0	logfile
✔	7D4P	30575	2022-05-15	2020-09-24	2.7	3.03	2.86	3.0	0.007	0.80	0.0	0.04	13.57	0.00	2.269	4.70	0.67	1.2	98.8	0.0	2.42	0.58	0.76	3.11	3.0	0.002	0.48	0.0	0.03	15.83	0.00	2.208	4.35	1.01	0.9	99.1	0.0	2.71	0.61	0.59	0.78	2.69	22472	2676	8	0	28	0	0	logfile
✔	7oZV	13138	2022-05-12	2021-06-28	3.2	3.08	3.16	3.3	0.007	0.58	0.0	0.04	13.29	0.01	2.202	8.59	0.00	2.6	97.4	0.0	-0.22	0.64	0.79	3.09	3.3	0.003	0.48	0.0	0.04	15.36	0.00	2.139	8.29	0.00	2.3	97.7	0.0	-0.10	1.89	0.73	0.83	2.74	8409	991	6	22	2	0	0	logfile

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