Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PW4	13674	2022-12-14	2021-10-06	3.27	3.69	—	3.5	0.003	0.62	0.0	0.15	13.04	0.00	2.030	4.61	0.00	2.8	97.2	0.0	1.69	0.79	0.82	2.05	3.5	0.002	0.45	0.0	0.04	14.20	0.00	1.937	4.11	0.12	2.7	97.3	0.0	1.79	0.90	0.81	0.85	1.82	18965	2435	5	0	199	0	0	logfile
✔	7o6E	12738	2022-12-19	2021-04-10	2.1	1.78	2.15	1.6	0.017	1.10	0.0	0.07	18.13	0.01	2.110	3.61	0.00	2.3	97.7	0.0	2.10	0.87	0.88	6.02	1.6	0.003	0.46	0.0	0.03	18.16	0.00	2.221	3.78	0.29	0.5	99.5	0.0	4.53	0.29	0.88	0.89	5.11	35304	4248	48	0	0	1392	0	logfile
✔	7SFK	25091	2022-12-11	2021-10-04	2.74	2.96	—	3.1	0.008	0.97	0.0	0.04	18.02	0.01	2.265	3.74	0.43	1.8	98.2	0.0	2.37	0.74	0.84	3.90	3.0	0.002	0.46	0.0	0.04	17.03	0.01	2.165	5.17	0.43	2.5	97.5	0.0	1.20	0.33	0.67	0.83	3.89	7419	852	9	0	24	57	0	logfile
✔	7oo6	13006	2022-12-13	2021-05-26	3.1	2.92	2.88	3.0	0.005	0.63	0.0	0.05	10.97	0.00	2.327	9.05	0.00	1.5	98.5	0.0	2.48	0.63	0.80	2.67	3.0	0.003	0.46	0.0	0.04	13.94	0.00	2.358	7.46	0.20	1.3	98.7	0.0	2.23	1.13	0.63	0.82	2.25	14546	1827	14	0	14	0	0	logfile
✔	6ZBL	11157	2022-12-20	2020-06-08	3.6	4.39	3.70	4.0	0.014	1.20	0.0	0.07	14.69	0.01	2.400	1.54	0.00	0.7	99.3	0.0	-0.56	0.87	0.79	1.33	4.0	0.002	0.46	0.0	0.03	15.56	0.00	2.022	3.45	0.09	0.9	99.1	0.0	4.18	1.33	0.88	0.82	0.90	39074	2326	4	0	0	0	19788	logfile
✔	6X0V	21985	2022-12-11	2020-05-17	4.5	4.37	—	4.4	0.003	0.62	1.0	0.04	11.58	0.00	2.285	15.16	4.48	3.5	96.0	0.5	-2.45	0.40	0.74	—	4.4	0.002	0.46	0.0	0.04	13.09	0.00	2.230	19.17	0.00	6.0	94.0	0.0	2.59	1.22	0.40	0.75	—	1384	211	4	0	0	0	62	logfile
✔	6MRU	9213	2022-12-12	2018-10-15	3.2	3.31	—	3.3	0.005	0.73	0.0	0.04	10.16	0.01	2.297	2.27	0.82	1.4	98.6	0.0	-1.59	0.72	0.83	3.34	3.3	0.002	0.46	0.0	0.03	13.26	0.00	2.192	3.53	0.00	0.6	99.4	0.0	5.66	3.08	0.75	0.86	1.81	29107	3705	13	0	0	0	0	logfile
✔	6U6i	20666	2022-12-16	2019-08-29	3.12	3.43	—	3.4	0.006	0.45	0.0	0.07	11.24	0.00	2.029	6.16	0.00	7.6	92.4	0.0	-3.59	0.80	0.80	4.39	3.3	0.002	0.46	0.0	0.04	12.85	0.00	2.083	5.80	0.00	4.8	95.2	0.0	0.06	0.50	0.81	0.82	4.01	21701	1496	9	0	11	0	10337	logfile
✔	8AP9	15562	2022-12-14	2022-08-09	3.7	3.41	3.21	3.4	0.006	0.48	0.0	0.04	9.63	0.00	2.191	2.90	0.40	1.9	98.1	0.0	-0.08	0.57	0.83	3.96	3.4	0.003	0.46	0.0	0.04	13.16	0.00	2.153	3.82	0.00	3.0	97.0	0.0	-1.39	1.39	0.63	0.86	3.41	19658	1285	14	0	1	0	9972	logfile
✔	7oRN	13043	2022-12-13	2021-06-06	2.8	2.83	—	2.8	0.004	0.59	1.0	0.04	12.58	0.00	1.978	4.16	0.19	2.1	97.9	0.0	1.14	0.82	0.89	4.23	2.8	0.003	0.46	0.0	0.04	15.26	0.00	1.976	5.54	0.83	2.0	98.0	0.0	1.45	0.37	0.78	0.91	3.81	14811	1700	6	35	3	92	0	logfile
✔	8E4P	27895	2022-12-22	2022-08-18	3.59	4.02	3.50	3.9	0.004	0.75	0.0	0.05	13.14	0.00	2.242	7.79	0.00	3.0	97.0	0.0	2.88	0.65	0.74	1.40	3.8	0.002	0.46	0.0	0.03	13.75	0.00	2.187	7.67	0.04	2.9	97.1	0.0	2.68	0.43	0.66	0.76	1.49	51336	3596	8	0	12	0	24392	logfile
✔	7STo	25435	2022-12-15	2021-11-14	3.15	3.45	—	3.3	0.007	0.82	0.0	0.04	10.24	0.00	2.289	1.13	0.15	2.3	97.7	0.0	1.91	0.68	0.82	3.05	3.3	0.003	0.46	0.0	0.04	12.82	0.00	2.190	3.27	0.00	3.6	96.2	0.1	1.80	1.23	0.72	0.87	2.80	25210	1580	4	0	10	0	12268	logfile
✔	7PiM	13442	2022-12-12	2021-08-20	4.6	5.02	5.18	4.6	0.002	0.41	0.0	0.03	8.31	0.00	1.900	46.38	0.67	2.0	98.0	0.0	2.23	0.81	0.76	—	4.6	0.002	0.46	0.0	0.03	11.74	0.00	1.950	63.22	0.00	1.7	98.3	0.0	1.07	1.08	0.82	0.76	—	11844	1412	12	0	8	0	524	logfile
✔	7oNJ	12996	2022-12-13	2021-05-25	2.3	2.52	2.24	2.5	0.011	0.97	0.0	0.06	18.45	0.00	2.155	8.48	0.47	0.8	99.2	0.0	-0.25	0.76	0.88	5.16	2.5	0.003	0.46	0.0	0.04	18.21	0.00	2.171	7.75	0.47	0.8	99.2	0.0	2.22	1.55	0.76	0.90	4.35	16947	1834	21	0	63	266	0	logfile
✔	7T4N	25681	2022-12-11	2021-12-10	2.35	2.66	2.38	2.5	0.002	0.42	0.0	0.04	16.22	0.00	2.207	4.39	1.25	1.0	99.0	0.0	0.87	0.63	0.85	3.82	2.6	0.002	0.46	0.0	0.04	16.43	0.00	2.291	6.16	1.94	1.5	98.5	0.0	1.69	0.25	0.66	0.87	3.63	6476	803	2	0	0	0	0	logfile
✔	6MRT	9212	2022-12-11	2018-10-15	2.8	2.93	—	2.9	0.008	0.90	0.0	0.05	10.67	0.01	2.260	1.61	0.82	1.1	98.9	0.0	-1.27	0.70	0.84	3.77	2.9	0.003	0.46	0.0	0.03	15.43	0.00	2.226	3.14	1.29	0.5	99.5	0.0	5.71	3.08	0.73	0.86	2.07	26868	3420	12	0	0	0	0	logfile
✔	7SFJ	25079	2022-12-11	2021-10-04	2.74	3.33	—	3.4	0.007	0.94	0.0	0.04	18.41	0.01	2.308	4.07	1.28	2.5	97.5	0.0	2.20	0.62	0.78	3.51	3.4	0.002	0.47	0.0	0.04	17.60	0.00	2.280	5.02	1.28	3.1	96.9	0.0	2.40	0.47	0.57	0.77	3.08	7377	852	9	0	24	3	0	logfile
✔	6C9i	7436	2022-12-15	2018-01-26	3.09	3.21	—	3.2	0.029	1.48	0.0	0.12	9.22	0.01	2.417	1.04	0.00	0.3	99.6	0.1	2.36	0.79	0.85	4.97	3.2	0.004	0.47	0.0	0.04	15.04	0.00	2.229	5.61	0.12	0.0	100.0	0.0	3.66	2.42	0.72	0.90	3.62	23700	3087	24	0	0	0	0	logfile
✔	7S6D	24875	2022-12-12	2021-09-13	3.1	3.82	—	3.4	0.005	0.71	0.0	0.04	13.49	0.00	2.083	3.46	0.00	3.4	96.6	0.0	-0.10	0.86	0.81	3.05	3.4	0.003	0.47	0.0	0.04	14.14	0.00	2.025	5.78	0.00	3.8	96.2	0.0	0.32	1.12	0.86	0.83	3.01	46193	3112	8	0	1	0	22846	logfile
✔	7RXH	24731	2022-12-11	2021-08-23	2.3	3.07	—	2.8	0.009	1.40	0.0	0.05	19.48	0.00	2.211	14.01	0.56	2.7	97.1	0.2	-0.87	0.63	0.78	3.25	2.8	0.004	0.47	0.0	0.04	15.58	0.00	1.993	13.56	0.74	3.2	96.8	0.0	2.12	1.27	0.60	0.91	4.06	5631	626	1	0	18	24	48	logfile

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