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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7PW4 | 13674 | 2022-12-14 | 2021-10-06 | 3.27 | 3.69 | — | 3.5 | 0.003 | 0.62 | 0.0 | 0.15 | 13.04 | 0.00 | 2.030 | 4.61 | 0.00 | 2.8 | 97.2 | 0.0 | 1.69 | 0.79 | 0.82 | 2.05 | 3.5 | 0.002 | 0.45 | 0.0 | 0.04 | 14.20 | 0.00 | 1.937 | 4.11 | 0.12 | 2.7 | 97.3 | 0.0 | 1.79 | 0.90 | 0.81 | 0.85 | 1.82 | 18965 | 2435 | 5 | 0 | 199 | 0 | 0 | logfile |
✔ | 7o6E | 12738 | 2022-12-19 | 2021-04-10 | 2.1 | 1.78 | 2.15 | 1.6 | 0.017 | 1.10 | 0.0 | 0.07 | 18.13 | 0.01 | 2.110 | 3.61 | 0.00 | 2.3 | 97.7 | 0.0 | 2.10 | 0.87 | 0.88 | 6.02 | 1.6 | 0.003 | 0.46 | 0.0 | 0.03 | 18.16 | 0.00 | 2.221 | 3.78 | 0.29 | 0.5 | 99.5 | 0.0 | 4.53 | 0.29 | 0.88 | 0.89 | 5.11 | 35304 | 4248 | 48 | 0 | 0 | 1392 | 0 | logfile |
✔ | 7SFK | 25091 | 2022-12-11 | 2021-10-04 | 2.74 | 2.96 | — | 3.1 | 0.008 | 0.97 | 0.0 | 0.04 | 18.02 | 0.01 | 2.265 | 3.74 | 0.43 | 1.8 | 98.2 | 0.0 | 2.37 | 0.74 | 0.84 | 3.90 | 3.0 | 0.002 | 0.46 | 0.0 | 0.04 | 17.03 | 0.01 | 2.165 | 5.17 | 0.43 | 2.5 | 97.5 | 0.0 | 1.20 | 0.33 | 0.67 | 0.83 | 3.89 | 7419 | 852 | 9 | 0 | 24 | 57 | 0 | logfile |
✔ | 7oo6 | 13006 | 2022-12-13 | 2021-05-26 | 3.1 | 2.92 | 2.88 | 3.0 | 0.005 | 0.63 | 0.0 | 0.05 | 10.97 | 0.00 | 2.327 | 9.05 | 0.00 | 1.5 | 98.5 | 0.0 | 2.48 | 0.63 | 0.80 | 2.67 | 3.0 | 0.003 | 0.46 | 0.0 | 0.04 | 13.94 | 0.00 | 2.358 | 7.46 | 0.20 | 1.3 | 98.7 | 0.0 | 2.23 | 1.13 | 0.63 | 0.82 | 2.25 | 14546 | 1827 | 14 | 0 | 14 | 0 | 0 | logfile |
✔ | 6ZBL | 11157 | 2022-12-20 | 2020-06-08 | 3.6 | 4.39 | 3.70 | 4.0 | 0.014 | 1.20 | 0.0 | 0.07 | 14.69 | 0.01 | 2.400 | 1.54 | 0.00 | 0.7 | 99.3 | 0.0 | -0.56 | 0.87 | 0.79 | 1.33 | 4.0 | 0.002 | 0.46 | 0.0 | 0.03 | 15.56 | 0.00 | 2.022 | 3.45 | 0.09 | 0.9 | 99.1 | 0.0 | 4.18 | 1.33 | 0.88 | 0.82 | 0.90 | 39074 | 2326 | 4 | 0 | 0 | 0 | 19788 | logfile |
✔ | 6X0V | 21985 | 2022-12-11 | 2020-05-17 | 4.5 | 4.37 | — | 4.4 | 0.003 | 0.62 | 1.0 | 0.04 | 11.58 | 0.00 | 2.285 | 15.16 | 4.48 | 3.5 | 96.0 | 0.5 | -2.45 | 0.40 | 0.74 | — | 4.4 | 0.002 | 0.46 | 0.0 | 0.04 | 13.09 | 0.00 | 2.230 | 19.17 | 0.00 | 6.0 | 94.0 | 0.0 | 2.59 | 1.22 | 0.40 | 0.75 | — | 1384 | 211 | 4 | 0 | 0 | 0 | 62 | logfile |
✔ | 6MRU | 9213 | 2022-12-12 | 2018-10-15 | 3.2 | 3.31 | — | 3.3 | 0.005 | 0.73 | 0.0 | 0.04 | 10.16 | 0.01 | 2.297 | 2.27 | 0.82 | 1.4 | 98.6 | 0.0 | -1.59 | 0.72 | 0.83 | 3.34 | 3.3 | 0.002 | 0.46 | 0.0 | 0.03 | 13.26 | 0.00 | 2.192 | 3.53 | 0.00 | 0.6 | 99.4 | 0.0 | 5.66 | 3.08 | 0.75 | 0.86 | 1.81 | 29107 | 3705 | 13 | 0 | 0 | 0 | 0 | logfile |
✔ | 6U6i | 20666 | 2022-12-16 | 2019-08-29 | 3.12 | 3.43 | — | 3.4 | 0.006 | 0.45 | 0.0 | 0.07 | 11.24 | 0.00 | 2.029 | 6.16 | 0.00 | 7.6 | 92.4 | 0.0 | -3.59 | 0.80 | 0.80 | 4.39 | 3.3 | 0.002 | 0.46 | 0.0 | 0.04 | 12.85 | 0.00 | 2.083 | 5.80 | 0.00 | 4.8 | 95.2 | 0.0 | 0.06 | 0.50 | 0.81 | 0.82 | 4.01 | 21701 | 1496 | 9 | 0 | 11 | 0 | 10337 | logfile |
✔ | 8AP9 | 15562 | 2022-12-14 | 2022-08-09 | 3.7 | 3.41 | 3.21 | 3.4 | 0.006 | 0.48 | 0.0 | 0.04 | 9.63 | 0.00 | 2.191 | 2.90 | 0.40 | 1.9 | 98.1 | 0.0 | -0.08 | 0.57 | 0.83 | 3.96 | 3.4 | 0.003 | 0.46 | 0.0 | 0.04 | 13.16 | 0.00 | 2.153 | 3.82 | 0.00 | 3.0 | 97.0 | 0.0 | -1.39 | 1.39 | 0.63 | 0.86 | 3.41 | 19658 | 1285 | 14 | 0 | 1 | 0 | 9972 | logfile |
✔ | 7oRN | 13043 | 2022-12-13 | 2021-06-06 | 2.8 | 2.83 | — | 2.8 | 0.004 | 0.59 | 1.0 | 0.04 | 12.58 | 0.00 | 1.978 | 4.16 | 0.19 | 2.1 | 97.9 | 0.0 | 1.14 | 0.82 | 0.89 | 4.23 | 2.8 | 0.003 | 0.46 | 0.0 | 0.04 | 15.26 | 0.00 | 1.976 | 5.54 | 0.83 | 2.0 | 98.0 | 0.0 | 1.45 | 0.37 | 0.78 | 0.91 | 3.81 | 14811 | 1700 | 6 | 35 | 3 | 92 | 0 | logfile |
✔ | 8E4P | 27895 | 2022-12-22 | 2022-08-18 | 3.59 | 4.02 | 3.50 | 3.9 | 0.004 | 0.75 | 0.0 | 0.05 | 13.14 | 0.00 | 2.242 | 7.79 | 0.00 | 3.0 | 97.0 | 0.0 | 2.88 | 0.65 | 0.74 | 1.40 | 3.8 | 0.002 | 0.46 | 0.0 | 0.03 | 13.75 | 0.00 | 2.187 | 7.67 | 0.04 | 2.9 | 97.1 | 0.0 | 2.68 | 0.43 | 0.66 | 0.76 | 1.49 | 51336 | 3596 | 8 | 0 | 12 | 0 | 24392 | logfile |
✔ | 7STo | 25435 | 2022-12-15 | 2021-11-14 | 3.15 | 3.45 | — | 3.3 | 0.007 | 0.82 | 0.0 | 0.04 | 10.24 | 0.00 | 2.289 | 1.13 | 0.15 | 2.3 | 97.7 | 0.0 | 1.91 | 0.68 | 0.82 | 3.05 | 3.3 | 0.003 | 0.46 | 0.0 | 0.04 | 12.82 | 0.00 | 2.190 | 3.27 | 0.00 | 3.6 | 96.2 | 0.1 | 1.80 | 1.23 | 0.72 | 0.87 | 2.80 | 25210 | 1580 | 4 | 0 | 10 | 0 | 12268 | logfile |
✔ | 7PiM | 13442 | 2022-12-12 | 2021-08-20 | 4.6 | 5.02 | 5.18 | 4.6 | 0.002 | 0.41 | 0.0 | 0.03 | 8.31 | 0.00 | 1.900 | 46.38 | 0.67 | 2.0 | 98.0 | 0.0 | 2.23 | 0.81 | 0.76 | — | 4.6 | 0.002 | 0.46 | 0.0 | 0.03 | 11.74 | 0.00 | 1.950 | 63.22 | 0.00 | 1.7 | 98.3 | 0.0 | 1.07 | 1.08 | 0.82 | 0.76 | — | 11844 | 1412 | 12 | 0 | 8 | 0 | 524 | logfile |
✔ | 7oNJ | 12996 | 2022-12-13 | 2021-05-25 | 2.3 | 2.52 | 2.24 | 2.5 | 0.011 | 0.97 | 0.0 | 0.06 | 18.45 | 0.00 | 2.155 | 8.48 | 0.47 | 0.8 | 99.2 | 0.0 | -0.25 | 0.76 | 0.88 | 5.16 | 2.5 | 0.003 | 0.46 | 0.0 | 0.04 | 18.21 | 0.00 | 2.171 | 7.75 | 0.47 | 0.8 | 99.2 | 0.0 | 2.22 | 1.55 | 0.76 | 0.90 | 4.35 | 16947 | 1834 | 21 | 0 | 63 | 266 | 0 | logfile |
✔ | 7T4N | 25681 | 2022-12-11 | 2021-12-10 | 2.35 | 2.66 | 2.38 | 2.5 | 0.002 | 0.42 | 0.0 | 0.04 | 16.22 | 0.00 | 2.207 | 4.39 | 1.25 | 1.0 | 99.0 | 0.0 | 0.87 | 0.63 | 0.85 | 3.82 | 2.6 | 0.002 | 0.46 | 0.0 | 0.04 | 16.43 | 0.00 | 2.291 | 6.16 | 1.94 | 1.5 | 98.5 | 0.0 | 1.69 | 0.25 | 0.66 | 0.87 | 3.63 | 6476 | 803 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6MRT | 9212 | 2022-12-11 | 2018-10-15 | 2.8 | 2.93 | — | 2.9 | 0.008 | 0.90 | 0.0 | 0.05 | 10.67 | 0.01 | 2.260 | 1.61 | 0.82 | 1.1 | 98.9 | 0.0 | -1.27 | 0.70 | 0.84 | 3.77 | 2.9 | 0.003 | 0.46 | 0.0 | 0.03 | 15.43 | 0.00 | 2.226 | 3.14 | 1.29 | 0.5 | 99.5 | 0.0 | 5.71 | 3.08 | 0.73 | 0.86 | 2.07 | 26868 | 3420 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SFJ | 25079 | 2022-12-11 | 2021-10-04 | 2.74 | 3.33 | — | 3.4 | 0.007 | 0.94 | 0.0 | 0.04 | 18.41 | 0.01 | 2.308 | 4.07 | 1.28 | 2.5 | 97.5 | 0.0 | 2.20 | 0.62 | 0.78 | 3.51 | 3.4 | 0.002 | 0.47 | 0.0 | 0.04 | 17.60 | 0.00 | 2.280 | 5.02 | 1.28 | 3.1 | 96.9 | 0.0 | 2.40 | 0.47 | 0.57 | 0.77 | 3.08 | 7377 | 852 | 9 | 0 | 24 | 3 | 0 | logfile |
✔ | 6C9i | 7436 | 2022-12-15 | 2018-01-26 | 3.09 | 3.21 | — | 3.2 | 0.029 | 1.48 | 0.0 | 0.12 | 9.22 | 0.01 | 2.417 | 1.04 | 0.00 | 0.3 | 99.6 | 0.1 | 2.36 | 0.79 | 0.85 | 4.97 | 3.2 | 0.004 | 0.47 | 0.0 | 0.04 | 15.04 | 0.00 | 2.229 | 5.61 | 0.12 | 0.0 | 100.0 | 0.0 | 3.66 | 2.42 | 0.72 | 0.90 | 3.62 | 23700 | 3087 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 7S6D | 24875 | 2022-12-12 | 2021-09-13 | 3.1 | 3.82 | — | 3.4 | 0.005 | 0.71 | 0.0 | 0.04 | 13.49 | 0.00 | 2.083 | 3.46 | 0.00 | 3.4 | 96.6 | 0.0 | -0.10 | 0.86 | 0.81 | 3.05 | 3.4 | 0.003 | 0.47 | 0.0 | 0.04 | 14.14 | 0.00 | 2.025 | 5.78 | 0.00 | 3.8 | 96.2 | 0.0 | 0.32 | 1.12 | 0.86 | 0.83 | 3.01 | 46193 | 3112 | 8 | 0 | 1 | 0 | 22846 | logfile |
✔ | 7RXH | 24731 | 2022-12-11 | 2021-08-23 | 2.3 | 3.07 | — | 2.8 | 0.009 | 1.40 | 0.0 | 0.05 | 19.48 | 0.00 | 2.211 | 14.01 | 0.56 | 2.7 | 97.1 | 0.2 | -0.87 | 0.63 | 0.78 | 3.25 | 2.8 | 0.004 | 0.47 | 0.0 | 0.04 | 15.58 | 0.00 | 1.993 | 13.56 | 0.74 | 3.2 | 96.8 | 0.0 | 2.12 | 1.27 | 0.60 | 0.91 | 4.06 | 5631 | 626 | 1 | 0 | 18 | 24 | 48 | logfile |