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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7TiK | 25912 | 2024-03-10 | 2022-01-13 | 2.4 | 2.38 | — | 2.0 | 0.007 | 0.49 | 0.0 | 0.04 | 16.31 | 0.00 | 2.218 | 7.94 | 0.00 | 4.6 | 95.4 | 0.0 | 1.31 | 0.77 | 0.80 | 1.31 | 2.0 | 0.003 | 0.42 | 0.0 | 0.04 | 16.39 | 0.00 | 2.243 | 8.33 | 1.35 | 0.6 | 99.4 | 0.0 | 6.01 | 0.91 | 0.79 | 0.81 | 1.38 | 2565 | 339 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8JMA | 36411 | 2024-03-19 | 2023-06-04 | 2.5 | 2.43 | 2.54 | 2.6 | 0.004 | 0.51 | 0.0 | 0.04 | 16.39 | 0.00 | 2.210 | 4.35 | 0.61 | 1.3 | 98.7 | 0.0 | 3.05 | 0.61 | 0.81 | 3.53 | 2.6 | 0.002 | 0.42 | 0.0 | 0.03 | 16.45 | 0.00 | 2.187 | 3.70 | 0.61 | 1.3 | 98.7 | 0.0 | 3.33 | 0.19 | 0.60 | 0.81 | 3.52 | 24568 | 1524 | 8 | 0 | 4 | 0 | 12472 | logfile |
✔ | 8oL3 | 16944 | 2024-03-10 | 2023-03-30 | 3.5 | 3.67 | 1.73 | 4.2 | 0.009 | 0.67 | 0.0 | 0.06 | 9.52 | 0.01 | 2.263 | 7.26 | 0.00 | 0.0 | 100.0 | 0.0 | -0.18 | 0.42 | 0.77 | 3.49 | 4.2 | 0.002 | 0.42 | 0.0 | 0.06 | 15.96 | 0.00 | 2.325 | 11.29 | 2.00 | 4.5 | 95.5 | 0.0 | -0.61 | 0.85 | 0.34 | 0.71 | 4.20 | 4970 | 330 | 10 | 0 | 0 | 0 | 2500 | logfile |
✔ | 7ZXP | 15013 | 2024-03-17 | 2022-05-22 | 2.39 | 2.72 | 2.35 | 2.5 | 0.002 | 0.42 | 0.0 | 0.04 | 14.73 | 0.00 | 2.332 | 3.46 | 1.17 | 1.1 | 98.9 | 0.0 | 4.20 | 0.72 | 0.87 | 3.52 | 2.6 | 0.003 | 0.42 | 0.0 | 0.04 | 15.58 | 0.00 | 2.295 | 3.28 | 2.68 | 1.1 | 98.9 | 0.0 | 4.85 | 0.90 | 0.64 | 0.90 | 3.48 | 18420 | 2292 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 8X83 | 38134 | 2024-03-19 | 2023-11-27 | 2.8 | 2.86 | 2.94 | 3.0 | 0.005 | 0.60 | 0.0 | 0.03 | 14.83 | 0.00 | 1.974 | 4.85 | 1.22 | 1.3 | 98.7 | 0.0 | 2.34 | 0.59 | 0.79 | 2.50 | 3.0 | 0.003 | 0.43 | 0.0 | 0.03 | 15.41 | 0.00 | 2.033 | 5.26 | 0.99 | 0.9 | 99.1 | 0.0 | 3.42 | 0.50 | 0.58 | 0.79 | 2.76 | 24482 | 1520 | 12 | 0 | 6 | 4 | 12424 | logfile |
✔ | 7MGM | 23829 | 2024-03-19 | 2021-04-12 | 3.1 | 3.35 | 3.11 | 3.0 | 0.004 | 0.55 | 0.0 | 0.04 | 14.45 | 0.00 | 1.874 | 5.80 | 0.04 | 2.4 | 97.6 | 0.0 | 0.78 | 0.87 | 0.89 | 2.62 | 3.0 | 0.002 | 0.43 | 0.0 | 0.04 | 15.03 | 0.00 | 1.990 | 5.57 | 0.22 | 1.7 | 98.3 | 0.0 | 1.81 | 0.23 | 0.87 | 0.90 | 2.42 | 24079 | 2964 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 8C54 | 16433 | 2024-03-16 | 2023-01-06 | 2.52 | 2.38 | 2.49 | 2.5 | 0.004 | 0.56 | 0.0 | 0.04 | 18.81 | 0.00 | 2.233 | 6.25 | 3.43 | 2.2 | 97.8 | 0.0 | 0.62 | 0.72 | 0.84 | 4.48 | 2.5 | 0.002 | 0.43 | 0.0 | 0.04 | 17.14 | 0.00 | 2.146 | 6.35 | 1.87 | 1.9 | 98.1 | 0.0 | 0.88 | 0.16 | 0.71 | 0.84 | 5.15 | 14266 | 1928 | 12 | 0 | 4 | 330 | 0 | logfile |
✔ | 8DNY | 27584 | 2024-03-10 | 2022-07-12 | 2.85 | 3.15 | 2.84 | 3.1 | 0.009 | 0.68 | 0.0 | 0.04 | 13.55 | 0.01 | 2.287 | 8.04 | 0.00 | 2.2 | 97.8 | 0.0 | 2.03 | 0.61 | 0.81 | 3.14 | 3.1 | 0.002 | 0.43 | 0.0 | 0.04 | 15.34 | 0.00 | 2.103 | 22.32 | 1.09 | 3.3 | 96.7 | 0.0 | 3.04 | 1.12 | 0.62 | 0.84 | 2.66 | 4336 | 558 | 4 | 0 | 1 | 0 | 5 | logfile |
✔ | 8EL8 | 28224 | 2024-03-10 | 2022-09-23 | 3.2 | 3.53 | 3.33 | 3.5 | 0.007 | 0.70 | 0.0 | 0.04 | 13.20 | 0.00 | 2.403 | 2.38 | 0.00 | 1.7 | 98.3 | 0.0 | 0.75 | 0.66 | 0.85 | 2.31 | 3.5 | 0.002 | 0.43 | 0.0 | 0.04 | 15.09 | 0.00 | 2.354 | 2.04 | 0.90 | 2.3 | 97.7 | 0.0 | 1.36 | 0.25 | 0.67 | 0.85 | 2.05 | 4467 | 597 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LGU | 23329 | 2024-03-15 | 2021-01-21 | 2.3 | 2.77 | — | 2.7 | 0.003 | 0.93 | 0.0 | 0.04 | 14.03 | 0.00 | 2.197 | 8.08 | 1.15 | 1.6 | 98.4 | 0.0 | 1.41 | 0.64 | 0.84 | 5.76 | 2.7 | 0.002 | 0.44 | 0.0 | 0.04 | 14.45 | 0.00 | 2.148 | 5.51 | 1.68 | 1.6 | 98.4 | 0.0 | 1.68 | 0.23 | 0.64 | 0.85 | 5.59 | 11597 | 1360 | 6 | 0 | 110 | 111 | 0 | logfile |
✔ | 7JGG | 22326 | 2024-03-10 | 2020-07-19 | 4.88 | 8.00 | — | 7.7 | 0.002 | 0.46 | 0.0 | 0.03 | 13.22 | 0.00 | 1.988 | 54.49 | 0.00 | 3.3 | 96.5 | 0.2 | 1.67 | 0.66 | 0.64 | — | 7.5 | 0.002 | 0.44 | 0.0 | 0.03 | 12.76 | 0.00 | 1.973 | 75.99 | 0.00 | 4.7 | 95.3 | 0.0 | 1.92 | 1.72 | 0.66 | 0.70 | — | 4210 | 506 | 1 | 0 | 0 | 0 | 28 | logfile |
✔ | 8EL7 | 28223 | 2024-03-10 | 2022-09-23 | 2.8 | 3.11 | 2.95 | 3.1 | 0.006 | 0.61 | 0.0 | 0.04 | 13.13 | 0.00 | 2.295 | 2.43 | 0.00 | 1.7 | 98.3 | 0.0 | 0.97 | 0.57 | 0.80 | 2.31 | 3.1 | 0.002 | 0.44 | 0.0 | 0.04 | 14.87 | 0.00 | 2.312 | 1.55 | 1.95 | 1.7 | 98.3 | 0.0 | 0.91 | 0.27 | 0.59 | 0.81 | 2.32 | 4562 | 604 | 2 | 0 | 0 | 5 | 0 | logfile |
✔ | 6PXM | 20521 | 2024-03-22 | 2019-07-26 | 2.1 | 2.33 | 2.32 | 2.4 | 0.008 | 0.71 | 0.0 | 0.04 | 16.03 | 0.00 | 2.392 | 1.60 | 0.00 | 0.6 | 99.4 | 0.0 | -3.44 | 0.79 | 0.89 | 5.35 | 2.3 | 0.002 | 0.44 | 0.0 | 0.03 | 17.97 | 0.00 | 2.283 | 4.03 | 0.78 | 1.8 | 98.2 | 0.0 | 5.29 | 1.48 | 0.79 | 0.90 | 3.81 | 32736 | 4080 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 8GZR | 34402 | 2024-03-15 | 2022-09-27 | 2.8 | 2.61 | 2.71 | 2.8 | 0.004 | 0.55 | 0.0 | 0.04 | 15.37 | 0.00 | 1.733 | 4.12 | 0.09 | 2.6 | 97.4 | 0.0 | -0.02 | 0.73 | 0.90 | 4.70 | 2.8 | 0.002 | 0.44 | 0.0 | 0.04 | 17.05 | 0.00 | 2.037 | 4.30 | 0.72 | 1.5 | 98.5 | 0.0 | 0.98 | 0.87 | 0.75 | 0.91 | 3.99 | 11318 | 1324 | 5 | 33 | 7 | 0 | 0 | logfile |
✔ | 6ZNH | 11311 | 2024-03-16 | 2020-07-06 | 3.6 | 3.61 | 3.56 | 3.6 | 0.006 | 0.84 | 0.0 | 0.04 | 13.44 | 0.00 | 2.160 | 4.03 | 3.03 | 2.6 | 97.4 | 0.0 | 0.52 | 0.57 | 0.83 | 1.42 | 3.6 | 0.002 | 0.44 | 0.0 | 0.03 | 15.57 | 0.00 | 2.245 | 4.21 | 1.25 | 0.9 | 99.1 | 0.0 | 4.88 | 1.17 | 0.56 | 0.81 | 1.39 | 14191 | 1817 | 23 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DNX | 27583 | 2024-03-10 | 2022-07-12 | 2.98 | 3.62 | 2.98 | 3.5 | 0.008 | 1.00 | 0.0 | 0.04 | 12.30 | 0.00 | 2.185 | 6.67 | 0.44 | 2.6 | 97.4 | 0.0 | 1.89 | 0.56 | 0.79 | 2.16 | 3.5 | 0.002 | 0.44 | 0.0 | 0.04 | 15.25 | 0.00 | 2.031 | 29.90 | 2.41 | 2.8 | 97.2 | 0.0 | 4.08 | 0.68 | 0.50 | 0.77 | 2.44 | 4291 | 549 | 4 | 0 | 1 | 0 | 20 | logfile |
✔ | 8J89 | 36064 | 2024-03-15 | 2023-05-01 | 2.31 | 3.12 | 2.39 | 2.9 | 0.003 | 0.46 | 0.0 | 0.04 | 10.98 | 0.00 | 2.215 | 5.85 | 0.15 | 3.6 | 96.4 | 0.0 | 0.51 | 0.82 | 0.89 | 4.79 | 2.9 | 0.002 | 0.44 | 0.0 | 0.04 | 13.16 | 0.00 | 2.062 | 6.34 | 0.38 | 3.4 | 96.6 | 0.0 | 1.20 | 1.88 | 0.81 | 0.88 | 4.03 | 12222 | 1502 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oZU | 13135 | 2024-03-11 | 2021-06-28 | 3.3 | 3.27 | 3.22 | 3.4 | 0.007 | 0.52 | 0.0 | 0.04 | 14.14 | 0.00 | 2.218 | 6.22 | 0.00 | 3.1 | 96.9 | 0.0 | 0.39 | 0.62 | 0.79 | 3.13 | 3.4 | 0.002 | 0.44 | 0.0 | 0.04 | 15.88 | 0.00 | 2.084 | 7.01 | 1.48 | 1.7 | 98.3 | 0.0 | 0.82 | 1.89 | 0.75 | 0.86 | 3.03 | 8408 | 991 | 6 | 22 | 2 | 0 | 0 | logfile |
✔ | 8EKS | 28212 | 2024-03-18 | 2022-09-21 | 3.1 | 3.47 | 3.18 | 3.5 | 0.003 | 0.62 | 0.0 | 0.04 | 13.55 | 0.00 | 2.215 | 3.64 | 0.00 | 1.9 | 98.1 | 0.0 | -2.29 | 0.72 | 0.84 | 3.39 | 3.5 | 0.002 | 0.44 | 0.0 | 0.03 | 14.78 | 0.00 | 2.115 | 5.52 | 0.77 | 1.9 | 98.1 | 0.0 | 2.06 | 0.38 | 0.66 | 0.83 | 3.60 | 20484 | 2504 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 8JM9 | 36410 | 2024-03-19 | 2023-06-04 | 2.6 | 2.53 | 2.63 | 2.8 | 0.003 | 0.47 | 0.0 | 0.03 | 15.46 | 0.00 | 2.099 | 5.71 | 0.61 | 1.3 | 98.7 | 0.0 | 3.59 | 0.45 | 0.69 | 2.96 | 2.8 | 0.002 | 0.44 | 0.0 | 0.03 | 15.52 | 0.00 | 2.111 | 4.00 | 0.30 | 1.7 | 98.3 | 0.0 | 3.70 | 0.36 | 0.57 | 0.80 | 3.00 | 24520 | 1524 | 4 | 0 | 0 | 0 | 12472 | logfile |