Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7K0N	22604	2022-07-04	2020-09-04	3.1	3.55	—	3.5	0.004	0.69	0.0	0.04	13.94	0.00	2.227	6.47	0.32	2.5	97.5	0.0	0.72	0.73	0.82	2.88	3.5	0.002	0.46	0.0	0.04	15.15	0.00	2.254	5.85	0.05	1.9	98.1	0.0	1.24	0.34	0.73	0.83	2.55	18470	2340	14	0	18	0	0	logfile
✔	6U6i	20666	2022-07-06	2019-08-29	3.12	3.43	—	3.4	0.006	0.45	0.0	0.07	11.24	0.00	2.029	6.16	0.00	7.6	92.4	0.0	-3.59	0.80	0.80	4.39	3.3	0.002	0.46	0.0	0.04	12.86	0.00	2.081	5.43	0.00	4.8	95.2	0.0	0.08	0.50	0.81	0.83	4.07	21701	1496	8	0	11	0	10337	logfile
✔	7SFK	25091	2022-07-03	2021-10-04	2.74	2.96	—	3.1	0.008	0.97	0.0	0.04	18.02	0.01	2.265	3.74	0.43	1.8	98.2	0.0	2.37	0.74	0.84	3.90	3.0	0.002	0.46	0.0	0.04	17.03	0.01	2.165	5.17	0.43	2.5	97.5	0.0	1.20	0.33	0.68	0.84	3.89	7419	852	9	0	24	57	0	logfile
✔	6MRU	9213	2022-07-03	2018-10-15	3.2	3.31	—	3.3	0.005	0.73	0.0	0.04	10.16	0.01	2.297	2.27	0.82	1.4	98.6	0.0	-1.59	0.72	0.83	3.34	3.3	0.002	0.46	0.0	0.03	13.26	0.00	2.192	3.53	0.00	0.6	99.4	0.0	5.66	3.08	0.75	0.86	1.81	29107	3705	13	0	0	0	0	logfile
✔	7oo6	13006	2022-07-04	2021-05-26	3.1	2.92	2.88	3.0	0.005	0.63	0.0	0.05	10.97	0.00	2.327	9.05	0.00	1.5	98.5	0.0	2.48	0.63	0.80	2.67	3.0	0.003	0.46	0.0	0.04	13.94	0.00	2.358	7.46	0.20	1.3	98.7	0.0	2.23	1.13	0.65	0.83	2.25	14546	1827	14	0	14	0	0	logfile
✔	6MRT	9212	2022-07-02	2018-10-15	2.8	2.93	—	2.9	0.008	0.90	0.0	0.05	10.67	0.01	2.260	1.61	0.82	1.1	98.9	0.0	-1.27	0.70	0.84	3.77	2.9	0.003	0.46	0.0	0.03	15.43	0.00	2.226	3.14	1.29	0.5	99.5	0.0	5.71	3.08	0.73	0.87	2.07	26868	3420	12	0	0	0	0	logfile
✔	6ZBL	11157	2022-07-07	2020-06-08	3.6	4.39	3.70	4.0	0.014	1.20	0.0	0.07	14.69	0.01	2.400	1.54	0.00	0.7	99.3	0.0	-0.56	0.87	0.79	1.33	4.0	0.003	0.47	0.0	0.03	15.53	0.00	2.015	2.99	0.00	1.0	99.0	0.0	4.19	1.34	0.88	0.82	0.89	39074	2326	4	0	0	0	19788	logfile
✔	7oRN	13043	2022-07-04	2021-06-06	2.8	2.83	—	2.8	0.004	0.59	1.0	0.04	12.58	0.00	1.978	4.16	0.19	2.1	97.9	0.0	1.14	0.82	0.89	4.23	2.8	0.003	0.47	0.0	0.04	15.17	0.00	1.976	5.23	0.83	2.4	97.6	0.0	1.44	0.36	0.79	0.90	3.86	14811	1700	6	35	3	92	0	logfile
✔	7E4T	30987	2022-07-05	2021-02-15	3.0	3.26	3.08	3.3	0.007	0.79	0.0	0.04	13.89	0.00	2.278	6.59	1.01	1.1	98.9	0.0	0.77	0.50	0.68	3.26	3.3	0.002	0.47	0.0	0.03	16.68	0.00	2.181	5.83	3.34	1.2	98.8	0.0	2.36	1.24	0.71	0.85	3.19	22276	2656	8	0	24	0	0	logfile
✔	6UCB	20727	2022-07-06	2019-09-15	3.28	3.46	—	3.5	0.009	0.76	0.0	0.05	13.85	0.01	2.152	5.80	0.00	5.1	94.9	0.0	-3.14	0.64	0.76	2.69	3.4	0.002	0.47	0.0	0.04	14.66	0.00	2.121	9.27	0.06	3.7	96.3	0.0	0.65	0.93	0.66	0.80	2.70	32324	2044	16	0	30	0	15694	logfile
✔	7SFJ	25079	2022-07-03	2021-10-04	2.74	3.33	—	3.4	0.007	0.94	0.0	0.04	18.41	0.01	2.308	4.07	1.28	2.5	97.5	0.0	2.20	0.62	0.78	3.51	3.4	0.002	0.47	0.0	0.04	17.60	0.00	2.280	5.02	1.28	3.1	96.9	0.0	2.40	0.47	0.58	0.77	3.08	7377	852	9	0	24	3	0	logfile
✔	7o6Q	12740	2022-07-03	2021-04-12	1.88	2.21	—	1.9	0.010	0.71	0.0	0.05	12.80	0.01	2.115	4.83	1.25	3.2	96.8	0.0	-1.61	0.88	0.85	7.59	1.9	0.002	0.47	0.0	0.04	14.46	0.00	2.188	5.16	1.63	0.8	99.2	0.0	3.35	0.36	0.90	0.90	6.06	7999	997	8	0	0	399	0	logfile
✔	6ZBC	11150	2022-07-04	2020-06-08	3.1	3.91	3.31	3.6	0.007	1.02	0.0	0.05	13.80	0.00	2.449	1.08	0.00	1.3	98.7	0.0	-0.79	0.85	0.80	2.24	3.6	0.002	0.47	0.0	0.03	15.19	0.00	2.079	3.69	0.09	1.1	98.9	0.0	4.36	0.84	0.85	0.81	1.55	19534	1160	4	0	0	0	9902	logfile
✔	6C9i	7436	2022-07-05	2018-01-26	3.09	3.21	—	3.2	0.029	1.48	0.0	0.12	9.22	0.01	2.417	1.04	0.00	0.3	99.6	0.1	2.36	0.79	0.85	4.97	3.2	0.004	0.47	0.0	0.04	15.04	0.00	2.229	5.61	0.12	0.0	100.0	0.0	3.66	2.42	0.73	0.90	3.62	23700	3087	24	0	0	0	0	logfile
✔	7D4P	30575	2022-07-05	2020-09-24	2.7	3.03	2.86	3.0	0.007	0.80	0.0	0.04	13.57	0.00	2.269	4.70	0.67	1.2	98.8	0.0	2.42	0.58	0.76	3.11	3.0	0.002	0.48	0.0	0.03	15.83	0.00	2.208	4.35	1.01	0.9	99.1	0.0	2.71	0.61	0.59	0.78	2.69	22472	2676	8	0	28	0	0	logfile
✔	7oo0	13003	2022-07-04	2021-05-26	3.1	3.05	2.96	3.1	0.012	1.13	0.0	0.07	12.80	0.00	2.131	7.27	0.00	3.1	96.9	0.0	-1.80	0.61	0.78	2.85	3.1	0.003	0.48	0.0	0.04	13.87	0.00	2.313	6.05	0.00	1.5	98.5	0.0	1.59	1.54	0.63	0.80	2.28	16016	1834	14	0	56	0	0	logfile
✔	7LCJ	23275	2022-07-02	2021-01-11	2.82	3.02	2.78	3.1	0.011	1.19	3.0	0.08	13.36	0.01	2.216	8.73	1.16	3.9	96.1	0.0	0.54	0.46	0.80	2.75	3.1	0.002	0.48	0.0	0.03	15.51	0.00	2.257	4.36	0.58	1.8	98.2	0.0	1.56	1.69	0.49	0.82	2.84	3264	390	1	0	1	17	0	logfile
✔	7SMM	25202	2022-07-04	2021-10-26	2.5	2.86	—	2.7	0.005	0.72	0.0	0.04	14.54	0.00	2.099	3.62	0.00	4.1	95.9	0.0	1.36	0.80	0.86	4.48	2.7	0.002	0.48	0.0	0.04	14.92	0.00	2.266	5.13	1.07	3.2	96.8	0.0	1.88	0.31	0.81	0.88	4.00	17256	2030	20	0	39	63	0	logfile
✔	7MQB	23941	2022-07-05	2021-05-05	3.25	3.29	3.22	3.3	0.007	0.72	0.0	0.05	13.00	0.00	2.302	3.12	0.66	0.5	99.5	0.0	1.28	0.81	0.86	4.28	3.3	0.003	0.48	0.0	0.04	14.47	0.00	2.141	4.03	0.82	2.5	97.5	0.0	1.13	0.37	0.82	0.89	4.88	12760	1640	16	16	0	0	0	logfile
✔	7S3i	24825	2022-07-03	2021-09-07	2.51	2.95	2.28	2.8	0.002	0.44	0.0	0.04	13.63	0.00	2.088	6.16	0.00	2.1	97.9	0.0	1.36	0.80	0.87	3.90	2.8	0.002	0.48	0.0	0.04	16.10	0.00	2.163	6.60	1.04	1.7	98.3	0.0	2.05	0.93	0.76	0.87	3.45	8094	1023	5	0	0	0	0	logfile

• ← previous
• Page 2 of 392
• next →