Table showing results for June 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6ZBJ	11156	2021-06-04	2020-06-08	3.3	4.20	3.47	3.8	0.011	1.04	0.0	0.06	14.14	0.01	2.351	1.38	0.00	0.7	99.3	0.0	-1.34	0.87	0.81	1.60	3.8	0.002	0.49	0.0	0.03	15.38	0.00	2.080	3.57	0.00	0.5	99.5	0.0	3.97	1.36	0.88	0.83	1.31	39212	2334	4	0	0	0	19864	logfile
✔	6WCC	21606	2021-06-02	2020-03-30	3.24	3.27	—	3.3	0.003	0.51	0.0	0.03	15.73	0.00	2.025	4.39	2.26	0.8	99.2	0.0	1.46	0.53	0.76	1.58	3.3	0.002	0.49	0.0	0.03	15.81	0.00	2.217	5.68	0.32	2.6	97.4	0.0	4.53	1.31	0.54	0.79	1.94	11629	734	6	0	5	12	5908	logfile
✔	6X0V	21985	2021-06-01	2020-05-17	4.5	4.37	—	4.4	0.003	0.62	1.0	0.04	11.58	0.00	2.285	13.37	4.48	3.5	96.0	0.5	-2.45	0.40	0.74	—	4.4	0.002	0.49	0.0	0.04	11.82	0.00	2.364	17.83	0.00	4.0	96.0	0.0	2.26	1.18	0.40	0.74	—	1384	211	4	0	0	0	62	logfile
✔	6o0X	0583	2021-06-02	2019-02-17	3.28	3.97	—	3.6	0.005	0.74	0.0	0.04	16.67	0.01	2.317	2.65	0.14	6.2	93.8	0.0	-4.06	0.85	0.88	2.75	3.6	0.002	0.49	0.0	0.03	17.13	0.00	2.221	5.80	0.14	3.9	96.1	0.0	-0.03	1.22	0.84	0.88	2.57	11257	1112	5	150	0	0	0	logfile
✔	6NT9	0506	2021-06-02	2019-01-28	3.3	3.42	—	3.3	0.010	0.89	0.0	0.06	9.66	0.01	2.250	1.52	0.18	3.5	96.5	0.0	-2.03	0.81	0.86	3.98	3.3	0.002	0.49	0.0	0.04	14.34	0.00	2.230	4.45	0.09	1.8	98.2	0.0	2.84	0.61	0.83	0.87	3.02	9906	1228	4	0	0	0	0	logfile
✔	6SKY	10231	2021-06-03	2019-08-16	2.8	2.95	—	3.0	0.009	0.69	0.0	0.05	13.80	0.00	2.077	5.01	3.63	4.2	95.8	0.0	-2.12	0.75	0.85	2.69	3.0	0.002	0.49	0.0	0.04	16.68	0.00	2.109	5.23	2.60	2.3	97.7	0.0	1.68	2.20	0.76	0.86	2.30	22348	2824	4	0	4	0	0	logfile
✔	7JGF	22325	2021-06-01	2020-07-19	4.69	4.81	—	4.8	0.002	0.62	0.0	0.04	13.16	0.01	2.109	26.40	0.41	4.6	95.4	0.0	-0.87	0.39	0.43	—	4.7	0.002	0.50	0.0	0.04	13.46	0.00	2.074	52.91	0.41	6.3	93.7	0.0	0.95	0.80	0.42	0.46	—	4477	532	1	0	0	0	30	logfile
✔	7CMV	30411	2021-06-01	2020-07-29	2.7	2.91	—	2.9	0.008	0.50	0.0	0.04	12.56	0.00	2.032	3.78	0.00	1.5	98.5	0.0	2.95	0.61	0.78	2.85	2.9	0.002	0.50	0.0	0.04	15.64	0.00	2.192	6.19	1.56	1.4	98.6	0.0	1.89	0.47	0.63	0.82	2.83	8775	1123	5	0	1	0	0	logfile
✔	7A2i	11625	2021-06-01	2020-08-18	3.3	3.94	3.40	3.8	0.004	0.62	0.0	0.04	12.87	0.00	2.232	7.09	0.00	7.0	93.0	0.0	-1.94	0.81	0.84	2.69	3.8	0.002	0.50	0.0	0.04	14.09	0.00	2.248	5.52	0.00	3.8	96.2	0.0	-0.19	1.21	0.82	0.85	2.30	9196	1217	2	0	1	0	0	logfile
✔	7C2K	30275	2021-06-02	2020-05-07	2.93	3.24	3.00	3.1	0.007	0.68	0.0	0.04	13.79	0.00	2.256	7.20	0.00	4.5	95.5	0.0	-2.91	0.78	0.89	4.22	3.1	0.002	0.50	0.0	0.04	15.26	0.00	2.219	5.95	1.27	3.9	96.1	0.0	-0.33	0.44	0.75	0.89	3.84	10692	1256	7	31	3	0	0	logfile
✔	7KJW	22900	2021-06-01	2020-10-26	2.9	3.11	—	3.1	0.006	0.54	0.0	0.04	13.99	0.00	2.198	4.70	0.87	2.6	97.3	0.1	0.64	0.76	0.83	4.14	3.1	0.003	0.50	0.0	0.04	15.97	0.00	2.267	6.87	1.49	2.2	97.8	0.0	0.68	0.95	0.78	0.86	4.16	8561	949	5	44	2	0	0	logfile
✔	6PUZ	20485	2021-06-02	2019-07-18	2.8	3.10	2.87	3.1	0.008	0.87	0.0	0.05	19.46	0.01	0.000	5.85	0.19	2.2	97.8	0.0	-2.67	0.74	0.89	4.50	3.0	0.004	0.50	0.0	0.04	21.03	0.00	0.000	7.65	0.58	1.7	98.3	0.0	0.70	0.39	0.70	0.90	4.04	11702	1230	28	72	10	340	0	logfile
✔	3J89	6123	2021-06-01	2014-10-07	3.6	2.21	—	3.5	0.022	1.64	0.0	0.10	11.97	0.01	2.578	0.00	0.00	3.5	96.5	0.0	-0.96	0.83	0.81	0.77	3.2	0.003	0.50	0.0	0.03	21.08	0.00	2.048	10.75	0.75	1.0	99.0	0.0	3.06	1.99	0.82	0.79	0.39	9025	551	19	0	0	0	4598	logfile
✔	6ZBD	11151	2021-06-02	2020-06-08	3.21	3.97	3.37	3.6	0.010	1.19	0.0	0.08	13.68	0.01	2.466	0.87	0.00	0.9	99.1	0.0	0.87	0.85	0.78	1.78	3.6	0.003	0.50	0.0	0.03	15.31	0.00	1.932	4.97	0.18	1.6	98.4	0.0	4.10	2.17	0.86	0.81	1.74	19519	1159	4	0	0	0	9896	logfile
✔	6ZBG	11154	2021-06-02	2020-06-08	3.2	3.97	3.37	3.6	0.010	1.15	0.0	0.07	13.62	0.01	2.468	1.13	0.00	1.1	98.9	0.0	0.72	0.84	0.78	2.20	3.6	0.002	0.50	0.0	0.03	15.38	0.00	2.148	5.73	0.18	0.9	99.1	0.0	4.34	1.60	0.86	0.81	1.54	19534	1160	4	0	0	0	9902	logfile
✔	6U6D	20663	2021-06-02	2019-08-29	3.6	3.73	—	3.7	0.002	0.51	0.0	0.04	12.89	0.00	2.227	6.53	0.00	3.4	96.6	0.0	-4.06	0.79	0.84	1.77	3.7	0.002	0.50	0.0	0.04	15.43	0.00	2.157	6.44	0.60	2.8	97.2	0.0	0.04	0.51	0.82	0.84	2.07	16770	2156	10	0	2	0	0	logfile
✔	6YW5	10958	2021-06-06	2020-04-29	2.85	2.95	2.83	2.9	0.002	0.37	0.0	0.03	10.00	0.00	1.841	2.48	0.14	1.6	98.4	0.0	-2.99	0.73	0.86	5.10	2.9	0.002	0.50	0.0	0.03	14.07	0.00	1.906	4.32	0.69	2.3	97.7	0.0	1.35	0.64	0.73	0.88	3.94	167548	7528	47	1435	120	0	76656	logfile
✔	7NRi	12546	2021-06-03	2021-03-03	3.03	3.49	3.11	3.3	0.007	0.69	2.0	0.05	14.47	0.00	1.984	3.80	0.32	6.2	93.7	0.1	-3.46	0.78	0.84	3.97	3.3	0.002	0.50	0.0	0.04	15.60	0.00	2.035	3.20	0.16	3.4	96.6	0.0	-0.18	0.71	0.77	0.87	3.55	23143	1504	6	0	1	0	11351	logfile
✔	7LMA	23437	2021-06-02	2021-02-05	3.3	3.45	—	3.4	0.004	0.56	0.0	0.04	16.77	0.00	2.202	6.61	0.91	4.3	95.7	0.0	-2.64	0.73	0.82	2.57	3.4	0.002	0.50	0.0	0.04	17.57	0.00	2.123	6.86	0.18	3.0	97.0	0.0	0.25	0.59	0.77	0.84	1.88	18672	1837	9	170	1	0	0	logfile
✔	6T0U	10359	2021-06-02	2019-10-03	3.12	3.20	3.13	3.2	0.005	0.69	0.0	0.05	14.30	0.01	2.273	3.95	5.25	3.4	96.6	0.0	-3.41	0.68	0.86	3.55	3.2	0.002	0.50	0.0	0.04	15.69	0.00	2.132	7.69	0.33	3.2	96.8	0.0	0.55	0.59	0.69	0.87	3.00	14176	1695	4	23	0	0	0	logfile

• ← previous
• Page 2 of 253
• next →