Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6C9i	7436	2023-04-26	2018-01-26	3.09	3.21	—	3.2	0.029	1.48	0.0	0.12	9.22	0.01	2.417	0.81	0.00	0.3	99.6	0.1	2.36	0.79	0.85	4.97	3.2	0.004	0.46	0.0	0.04	15.19	0.00	2.246	5.13	0.16	0.0	100.0	0.0	3.57	2.43	0.72	0.90	3.61	23700	3087	24	0	0	0	0	logfile
✔	7MQH	23947	2023-04-26	2021-05-05	3.1	3.00	3.04	3.2	0.007	0.81	0.0	0.06	12.35	0.00	2.350	2.29	0.00	1.0	99.0	0.0	0.95	0.79	0.86	5.69	3.2	0.002	0.46	0.0	0.04	13.38	0.00	2.316	3.94	0.66	2.5	97.5	0.0	0.95	0.37	0.82	0.89	5.52	12736	1640	16	16	0	0	0	logfile
✔	6U5N	20650	2023-04-22	2019-08-28	3.2	3.32	—	3.3	0.006	0.76	0.0	0.05	14.13	0.01	1.907	2.80	0.15	4.8	95.2	0.0	-3.09	0.72	0.84	2.62	3.3	0.002	0.46	0.0	0.05	15.73	0.00	2.145	5.34	0.44	2.3	97.7	0.0	0.97	1.21	0.67	0.84	2.00	13262	1776	24	0	24	8	0	logfile
✔	8ADi	15363	2023-04-26	2022-07-08	3.4	3.67	3.39	3.7	0.003	0.52	0.0	0.04	14.25	0.01	1.491	4.93	0.08	4.4	95.6	0.0	-0.36	0.69	0.83	3.58	3.7	0.003	0.46	0.0	0.04	14.95	0.00	1.958	5.31	0.40	5.3	94.7	0.0	-0.07	0.24	0.66	0.85	3.10	23141	1505	6	0	0	0	11353	logfile
✔	7RJT	24490	2023-04-28	2021-07-21	2.93	3.41	—	3.3	0.005	0.59	0.0	0.04	14.12	0.00	2.251	4.92	0.00	2.6	97.4	0.0	0.61	0.75	0.80	2.98	3.3	0.002	0.46	0.0	0.04	15.10	0.00	2.288	4.90	0.83	2.3	97.7	0.0	0.75	0.34	0.77	0.83	2.50	28972	3608	12	0	28	24	0	logfile
✔	7oNJ	12996	2023-04-24	2021-05-25	2.3	2.52	2.24	2.5	0.009	0.86	0.0	0.05	18.33	0.00	2.155	8.48	0.47	0.8	99.2	0.0	-0.25	0.76	0.88	5.16	2.5	0.002	0.46	0.0	0.04	18.08	0.00	2.173	8.46	0.61	0.8	99.2	0.0	2.22	1.14	0.75	0.89	4.38	16947	1834	21	0	63	266	0	logfile
✔	7Z4J	14499	2023-04-23	2022-03-03	2.99	3.74	3.13	3.4	0.005	0.48	0.0	0.04	13.43	0.00	1.860	7.21	2.15	2.2	97.8	0.0	0.96	0.85	0.87	2.76	3.4	0.003	0.46	0.0	0.03	14.74	0.00	1.890	7.32	1.32	2.6	97.4	0.0	1.42	0.49	0.85	0.86	2.67	13948	1345	10	142	4	8	0	logfile
✔	7STo	25435	2023-04-27	2021-11-14	3.15	3.45	—	3.3	0.007	0.82	0.0	0.04	10.39	0.00	2.289	1.13	0.15	2.3	97.7	0.0	1.91	0.68	0.82	3.05	3.3	0.003	0.46	0.0	0.04	12.87	0.00	2.194	2.76	0.15	3.1	96.7	0.1	1.88	1.23	0.70	0.86	2.74	25210	1580	4	0	10	0	12268	logfile
✔	7PiM	13442	2023-04-22	2021-08-20	4.6	5.02	5.18	4.6	0.002	0.41	0.0	0.03	8.31	0.00	1.900	45.64	0.67	2.0	98.0	0.0	2.23	0.81	0.76	—	4.6	0.002	0.46	0.0	0.03	12.01	0.00	1.854	66.59	0.00	3.2	96.8	0.0	0.47	1.02	0.82	0.76	—	11844	1412	12	0	8	0	524	logfile
✔	7YVQ	34136	2023-04-29	2022-08-19	3.18	3.50	3.32	3.3	0.004	0.58	0.0	0.04	14.17	0.00	2.131	6.40	0.75	6.2	93.8	0.0	-0.26	0.79	0.87	3.43	3.3	0.002	0.47	0.0	0.04	14.98	0.00	2.207	6.67	0.49	4.8	95.2	0.0	0.12	1.28	0.79	0.89	3.08	30742	3874	15	0	21	0	0	logfile
✔	7MQi	23948	2023-04-26	2021-05-05	3.21	3.01	3.19	3.2	0.006	0.79	0.0	0.05	12.23	0.00	2.202	2.71	0.59	1.4	98.6	0.0	0.80	0.67	0.81	4.51	3.1	0.002	0.47	0.0	0.04	14.20	0.00	2.125	3.56	0.17	2.3	97.7	0.0	1.41	1.80	0.74	0.86	4.11	12696	1640	16	16	0	0	0	logfile
✔	7RHK	24464	2023-04-23	2021-07-17	3.27	2.87	—	3.1	0.012	0.72	0.0	0.05	14.31	0.00	2.260	6.51	0.00	2.8	97.2	0.0	0.46	0.63	0.83	1.80	3.1	0.002	0.47	0.0	0.04	15.69	0.00	2.193	10.72	0.25	2.7	97.3	0.1	2.00	0.30	0.62	0.85	1.98	14682	1776	8	0	5	0	0	logfile
✔	8AP9	15562	2023-04-25	2022-08-09	3.7	3.41	3.21	3.4	0.006	0.48	0.0	0.04	9.61	0.00	2.191	2.85	0.40	1.9	98.1	0.0	-0.08	0.57	0.83	3.96	3.4	0.003	0.47	0.0	0.04	13.17	0.00	2.147	3.87	0.00	3.2	96.8	0.0	-1.39	1.39	0.63	0.86	3.40	19658	1285	14	0	1	0	9972	logfile
✔	7PDS	13342	2023-04-26	2021-08-06	3.14	2.94	3.06	3.1	0.005	0.68	0.0	0.05	14.79	0.00	1.818	8.20	0.25	4.3	95.7	0.0	-0.79	0.73	0.86	3.97	3.0	0.003	0.47	0.0	0.04	16.21	0.00	1.907	8.80	0.25	3.5	96.5	0.0	-0.41	0.91	0.75	0.88	3.75	22549	2714	13	5	10	0	0	logfile
✔	7o6Q	12740	2023-04-20	2021-04-12	1.88	2.21	—	1.9	0.010	0.71	0.0	0.05	12.80	0.01	2.115	4.83	1.25	3.2	96.8	0.0	-1.61	0.88	0.85	7.59	1.9	0.002	0.47	0.0	0.04	14.51	0.00	2.189	4.70	1.63	0.8	99.2	0.0	3.42	0.36	0.90	0.90	6.06	7999	997	8	0	0	399	0	logfile
✔	7o6P	12739	2023-04-20	2021-04-12	2.04	2.55	—	2.1	0.008	0.59	0.0	0.05	11.73	0.00	2.140	6.08	0.93	1.8	98.2	0.0	-0.54	0.90	0.88	5.90	2.1	0.002	0.47	0.0	0.04	13.52	0.00	2.251	5.96	0.00	2.0	98.0	0.0	2.22	0.39	0.90	0.92	5.36	8276	1022	8	0	0	268	0	logfile
✔	7Ji0	22341	2023-04-20	2020-07-21	2.95	3.30	3.08	3.2	0.003	0.48	0.0	0.04	12.97	0.00	2.233	3.94	5.91	4.5	95.5	0.0	-3.04	0.73	0.84	4.32	3.2	0.002	0.47	0.0	0.04	15.32	0.00	2.210	3.66	2.96	3.8	96.2	0.0	1.47	0.45	0.70	0.83	3.46	3556	432	4	0	0	0	0	logfile
✔	7JGF	22325	2023-04-20	2020-07-19	4.69	4.81	—	4.8	0.002	0.62	0.0	0.04	13.16	0.01	2.109	26.74	0.41	4.6	95.4	0.0	-0.87	0.39	0.43	—	4.8	0.002	0.47	0.0	0.04	13.18	0.00	2.190	46.28	0.41	4.8	95.2	0.0	1.10	0.62	0.41	0.45	—	4477	532	1	0	0	0	30	logfile
✔	7YQC	34023	2023-04-22	2022-08-06	2.82	2.99	2.80	3.0	0.013	1.86	24.0	0.13	16.60	0.01	2.497	5.68	9.34	1.3	98.7	0.0	3.07	0.65	0.81	2.22	3.0	0.003	0.47	0.0	0.04	17.63	0.00	2.311	5.90	4.17	1.5	98.5	0.0	3.64	0.50	0.65	0.82	2.02	11396	1386	7	0	0	0	0	logfile
✔	7oZV	13138	2023-04-20	2021-06-28	3.2	3.08	3.16	3.3	0.007	0.58	0.0	0.04	13.23	0.01	2.202	8.41	0.00	2.6	97.4	0.0	-0.22	0.64	0.79	3.09	3.3	0.002	0.47	0.0	0.04	15.35	0.00	2.152	7.80	0.34	2.3	97.7	0.0	0.17	1.89	0.72	0.83	2.83	8409	991	6	22	2	0	0	logfile

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