Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6C96	7434	2022-05-13	2018-01-25	3.4	3.54	—	3.5	0.009	1.04	0.0	0.06	10.46	0.01	2.277	3.50	0.30	5.1	94.9	0.0	-4.38	0.58	0.82	3.11	3.5	0.002	0.66	0.0	0.04	15.49	0.00	2.162	7.61	0.46	4.3	95.7	0.0	1.10	0.76	0.59	0.83	1.86	12090	1446	4	0	8	0	0	logfile
✔	6G9o	4367	2022-05-17	2018-04-11	4.25	4.47	—	4.2	0.007	0.84	0.0	0.05	8.43	0.01	2.233	1.42	0.00	4.0	96.0	0.0	-2.09	0.74	0.81	—	4.2	0.002	0.58	0.0	0.04	10.95	0.00	2.215	9.64	0.00	3.2	96.8	0.0	-0.12	1.31	0.75	0.83	—	35532	4308	6	0	0	0	0	logfile
✔	6S6X	10108	2022-05-16	2019-07-03	3.5	3.64	3.54	3.6	0.023	0.99	0.0	0.13	14.05	0.00	2.111	6.90	0.04	4.2	95.8	0.0	-2.91	0.76	0.85	1.81	3.6	0.002	0.84	0.0	0.05	15.60	0.00	1.788	6.09	0.16	2.8	97.2	0.0	-0.13	1.55	0.77	0.86	1.78	90342	11664	24	0	30	0	0	logfile
✔	3JAU	6366	2022-05-14	2015-06-24	4.8	4.76	—	5.7	0.027	2.66	660.0	0.16	14.74	0.02	1.686	11.51	1.90	4.6	94.1	1.3	-2.16	0.21	0.38	—	5.4	0.002	0.71	0.0	0.04	13.18	0.00	2.216	11.98	0.00	3.3	96.2	0.4	-0.47	1.41	0.24	0.61	—	114900	14700	180	0	0	0	0	logfile
✔	6CoY	7544	2022-05-12	2018-03-13	3.36	3.52	3.38	3.6	0.020	1.43	0.0	0.09	10.54	0.01	2.242	2.00	0.00	2.8	96.7	0.4	-0.30	0.70	0.86	2.95	3.6	0.002	0.58	0.0	0.04	13.72	0.01	2.239	6.33	0.39	2.8	97.2	0.0	3.42	1.17	0.59	0.82	1.96	7156	930	4	0	4	0	0	logfile
✔	6PXM	20521	2022-05-16	2019-07-26	2.1	2.33	2.32	2.4	0.008	0.71	0.0	0.04	16.03	0.00	2.392	1.60	0.00	0.6	99.4	0.0	-3.44	0.79	0.89	5.35	2.3	0.002	0.44	0.0	0.03	17.75	0.00	2.211	4.41	0.14	1.8	98.2	0.0	5.26	1.48	0.79	0.90	3.80	32736	4080	24	0	0	0	0	logfile
✔	6PWN	20508	2022-05-13	2019-07-23	3.1	3.65	2.95	3.4	0.008	0.86	0.0	0.04	14.34	0.00	2.276	8.66	0.44	3.5	96.5	0.0	-2.16	0.80	0.84	2.55	3.4	0.002	0.58	0.0	0.04	15.27	0.00	2.270	6.93	0.13	3.2	96.8	0.0	1.47	1.21	0.81	0.85	1.95	15379	1960	14	0	14	0	0	logfile
✔	6UCB	20727	2022-05-16	2019-09-15	3.28	3.46	—	3.5	0.009	0.76	0.0	0.05	13.85	0.01	2.152	5.80	0.00	5.1	94.9	0.0	-3.14	0.64	0.76	2.69	3.4	0.002	0.47	0.0	0.04	14.66	0.00	2.121	9.27	0.06	3.7	96.3	0.0	0.65	0.93	0.66	0.80	2.70	32324	2044	16	0	30	0	15694	logfile
✔	6Co7	7542	2022-05-17	2018-03-12	3.07	3.22	—	3.3	0.011	1.39	0.0	0.06	13.17	0.01	2.070	1.63	0.33	5.6	94.3	0.1	-2.00	0.42	0.51	3.93	3.3	0.002	0.52	0.0	0.04	14.86	0.00	1.779	6.00	0.17	3.3	96.6	0.1	1.06	0.60	0.72	0.85	2.59	35255	4244	8	0	75	0	0	logfile
✔	6TUQ	10594	2022-05-14	2020-01-08	3.9	4.52	—	4.0	0.009	1.01	0.0	0.05	11.22	0.00	2.191	8.45	3.12	0.0	100.0	0.0	-6.69	0.68	0.88	0.54	4.0	0.002	0.69	0.0	0.04	12.40	0.00	2.309	10.56	0.19	0.0	100.0	0.0	-0.42	1.66	0.69	0.88	0.80	16100	2300	50	0	0	0	0	logfile
✔	6o0Z	0585	2022-05-13	2019-02-17	3.3	3.94	—	3.6	0.006	0.72	0.0	0.04	16.28	0.00	2.302	2.58	0.27	6.3	93.7	0.0	-4.11	0.86	0.88	3.46	3.6	0.002	0.52	0.0	0.03	16.62	0.00	2.157	4.96	0.14	5.7	94.3	0.0	0.16	0.32	0.85	0.88	3.28	11912	1288	4	135	0	0	0	logfile
✔	5A6F	3063	2022-05-13	2015-06-25	4.2	5.75	—	5.0	0.012	1.50	0.0	0.05	12.32	0.01	2.112	10.08	3.74	12.2	87.6	0.2	-4.94	0.56	0.74	—	4.7	0.002	0.57	0.0	0.04	10.94	0.00	2.010	10.19	0.00	5.1	94.9	0.0	-1.00	0.99	0.57	0.75	—	8881	540	2	0	43	0	4330	logfile
✔	6PKW	20368	2022-05-15	2019-06-30	4.5	4.77	—	4.4	0.007	0.94	0.0	0.05	9.19	0.01	2.239	4.19	0.00	5.8	94.2	0.0	-3.48	0.66	0.78	—	4.4	0.002	0.56	0.0	0.04	9.71	0.00	2.189	6.89	0.00	4.2	95.8	0.0	2.08	1.62	0.67	0.79	—	26262	4056	4	0	88	0	0	logfile
✔	6PKV	20367	2022-05-15	2019-06-30	4.3	4.49	—	4.3	0.005	0.86	0.0	0.05	8.98	0.01	2.311	3.59	0.00	4.7	95.3	0.0	-3.45	0.67	0.78	—	4.3	0.002	0.56	0.0	0.04	9.94	0.00	2.255	6.39	0.00	4.1	95.9	0.0	1.40	1.92	0.67	0.77	—	28284	4260	4	0	88	0	0	logfile
✔	6PQP	20450	2022-05-14	2019-07-09	3.06	3.46	3.03	3.4	0.012	1.29	0.0	0.23	17.05	0.01	2.132	8.99	0.19	4.3	95.7	0.0	-3.28	0.74	0.82	3.00	3.4	0.002	0.56	0.0	0.04	16.66	0.00	2.128	6.31	0.24	2.8	97.2	0.0	1.87	2.26	0.74	0.85	2.11	20492	2460	8	0	36	0	0	logfile
✔	6E1o	8959	2022-05-13	2018-07-10	3.59	3.70	—	3.7	0.008	1.21	0.0	0.06	11.66	0.01	2.219	4.62	0.78	6.9	93.1	0.0	-5.85	0.66	0.83	2.30	3.7	0.002	0.65	0.0	0.04	14.83	0.00	2.143	7.11	0.29	4.8	95.2	0.0	-0.49	0.84	0.67	0.83	0.91	9784	1182	4	0	18	0	0	logfile
✔	6PUU	20482	2022-05-17	2019-07-18	3.7	4.09	—	3.7	0.006	0.96	0.0	0.05	14.47	0.01	2.302	5.07	1.13	5.4	94.4	0.2	-3.50	0.75	0.84	1.62	3.7	0.002	0.59	0.0	0.04	14.86	0.00	2.190	6.69	0.23	4.9	95.1	0.1	0.37	0.42	0.75	0.83	1.30	38492	5236	8	0	8	0	0	logfile
✔	6MRU	9213	2022-05-13	2018-10-15	3.2	3.31	—	3.3	0.005	0.73	0.0	0.04	10.16	0.01	2.297	2.27	0.82	1.4	98.6	0.0	-1.59	0.72	0.83	3.34	3.3	0.002	0.46	0.0	0.03	13.26	0.00	2.192	3.53	0.00	0.6	99.4	0.0	5.66	3.08	0.75	0.86	1.81	29107	3705	13	0	0	0	0	logfile
✔	7C8D	30305	2022-05-13	2020-05-29	3.0	2.79	—	2.8	0.003	0.53	0.0	0.04	17.37	0.00	1.998	9.11	5.90	3.6	96.4	0.0	-2.80	0.71	0.76	3.07	2.8	0.002	0.65	0.0	0.04	17.82	0.00	2.096	10.00	3.69	4.6	95.4	0.0	0.12	1.10	0.72	0.78	2.32	6359	792	3	0	1	0	0	logfile
✔	6VQi	21351	2022-05-12	2020-02-05	4.3	4.89	—	4.2	0.005	1.14	0.0	0.05	3.90	0.01	2.327	1.95	0.00	1.3	98.2	0.5	2.16	0.56	0.73	—	4.1	0.002	0.54	0.0	0.03	3.92	0.00	2.243	3.65	0.00	5.4	94.5	0.1	3.11	0.74	0.57	0.74	—	5278	1062	8	0	0	0	0	logfile

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