Table showing results for October 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6QSU	4629	2021-10-05	2019-02-22	2.4	2.64	2.56	2.6	0.006	0.64	0.0	0.05	13.49	0.00	1.918	4.57	0.61	4.6	95.4	0.0	0.27	0.81	0.87	4.68	2.6	0.002	0.53	0.0	0.04	16.58	0.00	1.942	5.56	0.77	3.1	96.9	0.0	0.35	1.16	0.71	0.85	4.15	75758	9684	60	0	36	1178	0	logfile
✔	6VYL	21463	2021-10-04	2020-02-27	3.4	3.43	—	3.4	0.008	0.85	0.0	0.05	14.42	0.01	2.293	4.68	0.48	5.1	94.9	0.0	-4.60	0.72	0.83	2.99	3.4	0.002	0.53	0.0	0.04	15.76	0.00	2.175	8.71	0.07	3.3	96.7	0.0	-0.04	0.53	0.73	0.86	2.86	13671	1792	7	0	0	0	0	logfile
✔	7A6A	11668	2021-10-06	2020-08-25	1.15	1.13	—	1.2	0.018	1.71	24.0	0.16	14.70	0.01	1.857	3.78	3.03	1.2	98.8	0.0	2.45	0.47	0.61	9.02	1.2	0.002	0.56	0.0	0.04	15.27	0.00	2.248	2.86	1.82	1.8	98.2	0.0	4.70	0.46	0.69	0.81	8.90	41613	4152	72	0	32	4621	0	logfile
✔	7ADE	11725	2021-10-07	2020-09-14	4.2	6.36	—	4.1	0.002	0.57	0.0	0.04	15.20	0.00	1.954	13.41	3.12	4.6	95.3	0.0	-3.15	0.91	0.76	—	4.1	0.002	0.63	0.0	0.04	14.21	0.00	1.965	16.94	0.00	4.2	95.8	0.0	-0.45	1.54	0.95	0.86	—	51553	6315	26	92	18	15	0	logfile
✔	7KAU	22784	2021-10-03	2020-10-01	4.0	4.56	4.11	4.3	0.003	0.56	0.0	0.04	12.12	0.00	2.251	6.32	0.00	3.2	96.8	0.0	-0.93	0.64	0.84	—	4.3	0.002	0.61	0.0	0.04	14.25	0.00	2.202	7.67	0.18	3.0	97.0	0.0	2.25	0.56	0.64	0.84	—	10711	1340	7	0	56	0	0	logfile
✔	7KAH	22770	2021-10-03	2020-10-01	3.1	3.79	3.14	3.5	0.003	0.53	0.0	0.04	12.90	0.00	2.257	4.61	0.00	3.2	96.8	0.0	-1.32	0.69	0.86	2.50	3.5	0.002	0.55	0.0	0.04	14.63	0.00	2.162	5.12	0.27	2.4	97.6	0.0	2.15	1.27	0.68	0.86	1.82	10495	1349	6	0	0	0	0	logfile
✔	6M79	30128	2021-10-06	2020-03-18	3.1	3.20	3.11	3.2	0.007	0.72	0.0	0.05	14.54	0.00	2.067	5.52	3.99	3.9	96.1	0.0	-0.35	0.74	0.80	2.93	3.2	0.002	0.55	0.0	0.04	15.48	0.00	2.184	5.62	0.37	2.4	97.6	0.0	0.90	0.52	0.74	0.84	2.91	15324	1842	8	0	8	0	0	logfile
✔	7JGF	22325	2021-10-03	2020-07-19	4.69	4.81	—	4.8	0.002	0.62	0.0	0.04	13.16	0.01	2.109	26.40	0.41	4.6	95.4	0.0	-0.87	0.39	0.43	—	4.7	0.002	0.50	0.0	0.04	13.38	0.00	2.139	56.08	0.41	6.7	93.3	0.0	1.10	0.86	0.42	0.47	—	4477	532	1	0	0	0	30	logfile
✔	7K4B	22663	2021-10-05	2020-09-15	3.1	3.39	—	3.4	0.024	2.91	0.0	0.33	18.73	0.01	2.287	4.75	0.95	8.9	91.0	0.1	-6.09	0.56	0.82	3.72	3.4	0.002	1.08	0.0	0.04	16.11	0.00	2.241	12.24	0.38	7.0	93.0	0.0	-0.93	0.64	0.64	0.85	1.81	21118	2428	8	0	62	0	0	logfile
✔	6WKW	21811	2021-10-03	2020-04-17	3.6	3.75	—	3.6	0.095	1.94	0.0	0.06	16.38	0.00	1.408	12.62	0.52	12.6	87.3	0.2	-5.89	0.87	0.91	3.41	3.7	0.002	0.70	0.0	0.04	15.56	0.00	2.192	8.62	0.31	5.7	94.3	0.0	-1.98	0.58	0.85	0.89	2.61	10037	1319	8	0	4	0	0	logfile
✔	6ZU1	11426	2021-10-04	2020-07-21	3.0	2.64	3.07	2.9	0.013	1.11	0.0	0.06	16.30	0.02	1.042	6.27	5.10	5.8	93.5	0.7	-2.13	0.81	0.86	2.82	3.0	0.002	0.63	0.0	0.03	15.69	0.01	1.227	10.06	3.15	3.6	96.4	0.0	-0.03	2.18	0.81	0.86	2.19	172846	8886	79	4793	491	0	0	logfile
✔	7JMG	22393	2021-10-05	2020-07-31	4.5	7.15	—	4.3	0.005	0.93	0.0	0.05	9.82	0.01	1.373	7.33	0.27	10.3	89.6	0.1	-4.77	0.57	0.34	—	4.6	0.002	0.68	0.0	0.04	11.03	0.00	2.046	11.07	0.00	8.1	91.9	0.0	-1.52	0.87	0.77	0.58	—	120756	13500	12	0	3608	0	0	logfile
✔	6W21	21521	2021-10-07	2020-03-04	3.3	4.10	—	3.5	0.006	0.72	0.0	0.04	13.64	0.00	1.978	15.88	0.91	2.5	97.4	0.1	-1.12	0.88	0.81	1.93	3.5	0.002	0.58	0.0	0.04	14.91	0.00	2.195	10.32	0.06	2.9	97.1	0.0	0.99	1.55	0.89	0.87	2.04	48327	6123	27	0	36	0	0	logfile
✔	6VWL	21420	2021-10-07	2020-02-20	3.1	3.37	—	3.0	0.005	0.62	0.0	0.04	13.89	0.00	1.922	7.25	1.40	4.2	95.7	0.0	-2.42	0.82	0.85	2.58	3.0	0.002	0.53	0.0	0.03	15.27	0.00	1.960	12.61	0.23	4.8	95.2	0.0	-0.47	0.59	0.83	0.86	2.00	140603	5383	58	4593	34	0	0	logfile
✔	7CFS	30346	2021-10-03	2020-06-28	3.56	3.72	—	3.7	0.019	1.57	0.0	0.22	16.58	0.01	1.835	5.64	0.60	5.9	94.1	0.0	-5.35	0.79	0.84	2.85	3.7	0.002	0.64	0.0	0.04	16.68	0.00	2.305	6.22	0.30	2.2	97.8	0.0	-1.58	0.60	0.78	0.82	2.36	9974	1278	6	0	10	0	0	logfile
✔	7JMJ	22396	2021-10-04	2020-07-31	4.5	5.51	—	4.3	0.007	1.08	0.0	0.05	10.58	0.01	1.373	9.84	0.62	11.3	88.5	0.3	-4.67	0.56	0.32	—	4.3	0.002	0.67	0.0	0.04	11.30	0.00	2.169	12.03	0.03	8.8	91.1	0.1	-1.55	1.53	0.73	0.52	—	120756	13500	12	0	3608	0	0	logfile
✔	7KJR	22898	2021-10-03	2020-10-26	2.08	2.52	2.15	2.4	0.007	0.89	0.0	0.05	16.44	0.00	2.254	7.60	0.25	1.8	98.2	0.0	1.13	0.68	0.87	5.29	2.4	0.002	0.51	0.0	0.04	15.85	0.00	2.118	8.95	1.48	2.1	97.9	0.0	1.28	0.41	0.67	0.86	4.35	3840	448	8	0	2	122	0	logfile
✔	7JL0	22368	2021-10-04	2020-07-29	4.3	3.67	—	4.0	0.008	0.95	1.0	0.05	14.11	0.00	1.860	13.27	0.14	6.6	93.4	0.0	-1.52	0.75	0.77	—	4.0	0.002	0.62	0.0	0.04	14.16	0.00	2.146	9.45	0.14	4.1	95.9	0.0	0.75	1.47	0.76	0.78	—	7354	842	5	28	4	0	0	logfile
✔	6X3F	22021	2021-10-03	2020-05-21	3.03	3.23	—	3.3	0.006	0.93	0.0	0.06	14.75	0.01	2.351	3.78	0.00	5.0	95.0	0.0	-6.78	0.58	0.85	3.24	3.3	0.002	0.60	0.0	0.04	15.89	0.00	2.290	6.00	0.39	3.4	96.6	0.0	-0.19	1.27	0.59	0.86	2.07	9366	1227	6	0	3	0	0	logfile
✔	7CQ5	30436	2021-10-04	2020-08-08	2.6	2.69	—	2.7	0.007	1.05	1.0	0.06	10.22	0.01	2.185	3.51	0.46	7.4	92.6	0.0	-3.83	0.65	0.84	4.09	2.6	0.002	0.62	0.0	0.04	15.17	0.00	2.218	6.31	1.59	6.1	93.9	0.0	0.96	1.27	0.65	0.85	3.20	13942	1774	8	0	10	0	0	logfile

• ← previous
• Page 2 of 296
• next →