Table showing results for June 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6EBL	9025	2021-06-02	2018-08-06	3.0	3.15	—	3.1	0.012	1.36	0.0	0.07	12.89	0.01	2.034	6.75	0.21	2.7	97.3	0.0	-4.53	0.69	0.87	4.42	3.1	0.002	0.64	0.0	0.04	16.20	0.00	2.166	6.16	1.37	2.7	97.3	0.0	0.80	0.71	0.73	0.88	3.34	13952	1708	20	0	4	128	0	logfile
✔	6JHN	9826	2021-06-04	2019-02-18	4.5	7.49	—	4.4	0.010	1.23	0.0	0.06	16.52	0.01	2.114	19.19	1.44	13.9	85.8	0.3	-4.27	0.85	0.83	—	4.4	0.002	0.71	0.0	0.04	14.39	0.00	2.051	16.29	0.05	8.8	91.0	0.2	-1.04	0.64	0.82	0.77	—	109488	14332	12	0	12	0	0	logfile
✔	6LAT	0863	2021-06-02	2019-11-13	3.4	3.48	—	3.4	0.012	1.16	0.0	0.06	11.02	0.01	0.879	8.66	1.05	8.0	92.0	0.0	-3.75	0.81	0.87	3.66	3.4	0.002	0.61	0.0	0.04	14.62	0.00	2.137	7.03	0.22	4.7	95.3	0.0	-1.56	2.07	0.81	0.87	3.29	209040	27480	60	0	0	0	0	logfile
✔	6JQM	9874	2021-06-04	2019-03-31	3.3	3.54	—	3.5	0.005	0.83	0.0	0.05	10.76	0.01	2.304	5.76	0.06	5.8	94.2	0.0	-4.47	0.76	0.83	3.78	3.5	0.002	0.58	0.0	0.04	14.56	0.00	2.224	9.74	0.06	3.8	96.2	0.0	-0.88	2.48	0.78	0.86	2.69	30936	4068	12	0	6	0	0	logfile
✔	6RDo	4825	2021-06-05	2019-04-12	3.1	3.05	—	3.2	0.011	1.03	0.0	0.06	14.44	0.01	2.023	6.08	0.41	5.2	94.6	0.2	-3.89	0.71	0.84	3.15	3.2	0.002	0.57	0.0	0.04	15.84	0.00	2.013	9.37	0.23	3.9	96.0	0.1	0.41	0.51	0.72	0.85	2.44	53748	7103	37	0	11	0	0	logfile
✔	6NUR	0520	2021-06-01	2019-02-01	3.1	3.25	3.17	3.3	0.016	1.56	0.0	0.09	10.59	0.01	2.270	2.22	0.52	1.4	98.6	0.0	-0.12	0.64	0.81	4.19	3.3	0.002	0.60	0.0	0.04	14.73	0.00	2.178	6.36	0.31	2.0	98.0	0.0	0.64	0.78	0.59	0.82	3.03	8647	1087	5	0	2	0	0	logfile
✔	6UXA	20931	2021-06-02	2019-11-07	4.5	5.05	—	6.0	0.005	0.77	0.0	0.06	4.56	0.00	2.628	0.00	0.00	3.8	96.2	0.0	-2.56	0.71	0.63	—	6.0	0.002	0.63	0.0	0.05	3.30	0.00	2.242	3.25	0.00	2.5	97.5	0.0	2.65	4.60	0.72	0.66	—	10344	2104	8	0	0	0	0	logfile
✔	6RF2	4861	2021-06-02	2019-04-12	4.2	4.24	—	4.4	0.005	0.77	0.0	0.05	11.14	0.01	2.105	3.69	0.00	4.6	95.4	0.0	-4.97	0.83	0.81	—	4.3	0.002	0.65	0.0	0.04	13.93	0.00	2.047	9.05	0.00	3.6	96.4	0.0	-0.95	1.66	0.84	0.82	—	14328	1809	9	2	6	0	0	logfile
✔	6LN5	0924	2021-06-01	2019-12-28	2.8	2.93	2.78	2.9	0.005	0.60	0.0	0.04	12.21	0.00	2.027	5.32	0.12	2.0	98.0	0.0	-4.16	0.68	0.83	3.56	2.9	0.002	0.54	0.0	0.04	15.83	0.00	2.235	5.96	1.50	1.4	98.6	0.0	0.70	1.34	0.67	0.84	2.94	7840	1011	1	0	4	0	0	logfile
✔	6LN7	0926	2021-06-01	2019-12-28	2.8	2.90	2.71	2.9	0.006	0.62	0.0	0.04	11.52	0.00	2.101	5.64	0.00	2.3	97.7	0.0	-3.93	0.70	0.85	3.69	2.9	0.002	0.54	0.0	0.04	15.96	0.00	2.208	6.08	1.50	2.3	97.7	0.0	1.04	0.47	0.69	0.85	2.87	7840	1011	1	0	4	0	0	logfile
✔	6PYH	20524	2021-06-02	2019-07-29	4.3	4.52	—	4.3	0.016	1.05	0.0	0.05	14.64	0.01	2.079	28.13	0.55	18.1	81.6	0.2	-5.21	0.84	0.83	—	4.3	0.002	0.64	0.0	0.04	13.59	0.00	2.044	12.73	0.00	7.8	92.2	0.0	-2.19	0.70	0.83	0.82	—	13187	1648	3	0	0	0	0	logfile
✔	6E7Y	9001	2021-06-02	2018-07-27	3.57	3.68	—	3.7	0.005	0.81	0.0	0.05	10.12	0.01	2.364	2.19	0.00	7.1	92.9	0.0	-5.91	0.63	0.80	2.96	3.6	0.002	0.67	0.0	0.04	14.06	0.00	2.337	6.43	0.12	5.2	94.8	0.0	-0.69	1.37	0.63	0.81	2.58	15508	1900	8	0	4	0	0	logfile
✔	6oGZ	20060	2021-06-02	2019-04-03	3.6	3.85	—	3.8	0.008	0.90	0.0	0.06	15.78	0.01	2.244	5.40	0.17	4.2	95.8	0.0	-5.51	0.47	0.86	2.42	3.8	0.002	0.57	0.0	0.04	17.38	0.00	2.100	8.88	0.25	2.5	97.5	0.0	-1.84	1.44	0.44	0.84	1.63	74962	9081	14	35	2	0	0	logfile
✔	6oR5	9032	2021-06-02	2019-04-29	4.0	4.23	—	3.9	0.006	0.93	0.0	0.05	11.50	0.00	2.245	4.84	0.00	17.3	82.4	0.3	-5.53	0.76	0.79	—	3.9	0.002	0.58	0.0	0.04	9.07	0.00	2.142	4.78	0.00	14.9	85.1	0.0	-1.17	1.35	0.78	0.80	—	10364	2058	1	0	5	0	0	logfile
✔	5W9J	8785	2021-06-04	2017-06-23	4.8	4.91	5.09	4.7	0.013	1.58	0.0	0.07	11.98	0.02	1.881	5.22	0.90	4.0	94.8	1.2	0.53	0.78	0.75	—	4.7	0.002	0.67	0.0	0.04	12.98	0.00	2.161	10.32	0.00	5.1	94.8	0.1	0.36	1.33	0.74	0.69	—	32958	4257	12	0	0	0	0	logfile
✔	6UZD	20957	2021-06-04	2019-11-14	3.4	3.56	—	3.4	0.007	0.84	0.0	0.06	15.38	0.01	2.258	6.11	0.31	5.7	94.3	0.0	-4.30	0.77	0.84	2.82	3.4	0.002	0.54	0.0	0.04	15.96	0.00	2.189	8.15	0.15	4.2	95.8	0.0	-1.24	0.50	0.77	0.84	2.41	42822	5374	16	0	14	0	0	logfile
✔	3JAU	6366	2021-06-05	2015-06-24	4.8	4.76	—	5.7	0.027	2.65	660.0	0.16	14.74	0.02	1.686	11.04	1.90	4.6	94.1	1.3	-2.16	0.21	0.38	—	5.4	0.002	0.68	0.0	0.04	14.19	0.00	2.172	15.65	0.00	3.3	96.2	0.4	-0.13	1.45	0.21	0.38	—	114900	14700	180	0	0	0	0	logfile
✔	6R86	4752	2021-06-01	2019-03-31	3.4	3.39	—	3.4	0.007	1.08	1.0	0.06	16.69	0.01	2.061	4.54	0.39	7.5	92.2	0.4	-4.05	0.77	0.84	3.15	3.4	0.002	0.58	0.0	0.03	16.35	0.00	1.969	10.38	0.41	7.1	92.8	0.1	-1.02	1.24	0.78	0.84	2.12	132446	7198	49	3539	41	0	0	logfile
✔	6YLE	10836	2021-06-02	2020-04-07	3.3	3.50	3.37	3.4	0.009	1.05	0.0	0.06	16.80	0.01	1.910	4.05	0.28	1.5	98.5	0.0	-3.17	0.72	0.82	3.17	3.4	0.002	0.61	0.0	0.04	17.01	0.00	2.203	8.64	0.28	5.0	95.0	0.0	0.30	1.29	0.73	0.84	2.20	15345	1930	5	0	0	0	0	logfile
✔	6WB8	21586	2021-06-02	2020-03-26	3.24	3.55	—	3.5	0.011	0.89	0.0	0.05	8.78	0.00	2.124	16.90	0.00	5.9	93.9	0.2	-3.70	0.73	0.79	3.73	3.5	0.002	0.58	0.0	0.04	14.91	0.00	2.181	8.23	0.26	3.9	95.8	0.2	1.75	1.97	0.71	0.84	3.08	14888	1852	8	0	12	0	0	logfile

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