Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PYJ	13717	2023-07-13	2021-10-10	4.2	5.28	—	4.4	0.003	0.68	0.0	0.05	14.77	0.00	2.087	11.88	0.04	6.7	93.3	0.1	-1.32	0.90	0.85	—	4.4	0.002	0.61	0.0	0.04	15.11	0.00	2.011	15.17	0.00	6.5	93.5	0.0	-0.50	0.39	0.90	0.85	—	29362	3787	10	68	3	0	0	logfile
✔	8D3U	27164	2023-07-09	2022-06-01	3.7	3.38	3.74	3.6	0.005	1.15	1.0	0.05	17.66	0.00	1.392	12.21	0.63	5.2	94.7	0.1	0.50	0.64	0.81	1.41	3.6	0.002	0.61	0.0	0.04	17.53	0.00	2.162	10.92	0.09	4.8	95.2	0.1	0.44	0.46	0.64	0.82	1.36	10121	1287	4	0	2	0	0	logfile
✔	6XEU	22150	2023-07-05	2020-06-13	3.2	3.84	—	3.7	0.008	0.82	4.0	0.06	15.47	0.01	2.387	2.63	2.83	11.3	88.7	0.0	-2.88	0.76	0.88	3.94	3.7	0.002	0.60	0.0	0.04	15.63	0.00	2.305	3.40	0.09	4.3	95.7	0.0	0.15	0.37	0.77	0.89	3.06	10544	1312	8	0	16	0	0	logfile
✔	6NTS	0510	2023-07-05	2019-01-30	3.63	4.31	2.98	3.6	0.016	0.51	0.0	0.03	13.23	0.00	1.917	2.06	0.00	3.8	96.2	0.0	-2.08	0.89	0.77	0.59	3.6	0.002	0.62	0.0	0.04	15.01	0.00	2.074	8.23	0.00	2.2	97.8	0.0	0.88	2.31	0.92	0.85	1.06	9956	1240	5	0	3	0	0	logfile
✔	7PEo	13355	2023-07-12	2021-08-11	4.37	6.48	—	4.4	0.009	1.63	0.0	0.13	14.80	0.02	2.206	4.00	0.60	2.5	97.5	0.0	-2.52	0.90	0.86	—	4.3	0.002	0.58	0.0	0.03	12.57	0.00	2.099	6.50	0.00	1.9	98.1	0.0	1.94	1.33	0.91	0.88	—	26278	3388	42	0	210	0	0	logfile
✔	7LPN	23480	2023-07-08	2021-02-12	3.61	4.25	3.76	4.1	0.004	0.66	0.0	0.05	13.09	0.00	2.103	3.17	0.22	6.5	93.5	0.0	-0.80	0.81	0.82	2.63	4.1	0.002	0.61	0.0	0.04	14.62	0.00	2.236	6.51	0.17	5.2	94.8	0.0	-0.55	1.12	0.78	0.78	2.35	17787	2076	42	0	105	0	0	logfile
✔	7L2T	23140	2023-07-09	2020-12-17	3.08	3.13	3.02	3.2	0.004	0.72	1.0	0.26	12.81	0.00	2.348	0.67	0.60	5.5	94.5	0.0	0.70	0.64	0.84	3.00	3.2	0.002	0.56	0.0	0.04	14.44	0.00	2.237	3.81	0.23	6.8	93.2	0.0	0.88	1.03	0.63	0.86	2.41	20167	2463	16	0	9	4	0	logfile
✔	7WCM	32424	2023-07-04	2021-12-20	2.33	2.14	—	2.2	0.005	0.70	0.0	0.16	14.13	0.00	2.281	3.66	0.00	2.5	97.5	0.0	1.05	0.64	0.84	4.03	2.2	0.002	0.55	0.0	0.04	15.98	0.00	2.281	3.30	1.02	2.0	98.0	0.0	1.56	0.31	0.63	0.87	4.04	8232	1047	5	0	1	0	0	logfile
✔	7QXA	14196	2023-07-07	2022-01-26	3.2	3.14	3.21	3.2	0.010	1.18	0.0	0.09	17.53	0.01	2.254	0.91	0.28	6.0	93.6	0.4	-3.16	0.69	0.71	3.06	3.2	0.002	0.58	0.0	0.03	17.06	0.00	2.130	7.49	0.00	4.2	95.7	0.1	0.66	0.74	0.74	0.79	1.98	15576	1247	6	265	0	0	0	logfile
✔	7QER	13938	2023-07-09	2021-12-03	2.2	2.66	2.18	2.3	0.009	0.94	0.0	0.05	14.11	0.00	2.117	3.04	2.94	1.6	98.4	0.0	-0.05	0.84	0.88	3.46	2.3	0.002	0.55	0.0	0.04	14.91	0.00	2.235	2.48	2.20	1.3	98.7	0.0	3.46	1.24	0.84	0.89	3.42	19097	2244	36	0	60	305	0	logfile
✔	6oGZ	20060	2023-07-12	2019-04-03	3.6	3.85	—	3.8	0.008	0.90	0.0	0.06	15.82	0.01	2.244	5.40	0.17	4.2	95.8	0.0	-5.51	0.47	0.86	2.42	3.8	0.002	0.60	0.0	0.04	17.26	0.00	2.036	9.18	0.37	2.7	97.3	0.0	-1.75	1.44	0.44	0.85	1.69	74962	9081	14	35	2	0	0	logfile
✔	7MBX	23749	2023-07-04	2021-04-01	1.95	2.56	1.94	2.4	0.005	0.88	1.0	0.06	11.68	0.01	2.287	2.16	0.45	1.5	98.5	0.0	-0.11	0.72	0.86	4.55	2.3	0.002	0.58	0.0	0.04	15.32	0.00	2.208	6.37	1.00	1.1	98.9	0.0	2.02	0.52	0.71	0.87	4.44	8433	1065	11	0	2	61	0	logfile
✔	6TQE	10549	2023-07-05	2019-12-16	4.3	4.14	—	4.2	0.007	1.04	0.0	0.06	14.59	0.01	2.077	2.78	0.76	8.6	91.4	0.0	-6.13	0.76	0.89	—	4.2	0.002	0.61	0.0	0.04	13.69	0.00	2.010	4.66	0.00	5.1	94.9	0.0	-2.69	1.28	0.75	0.88	—	10076	1268	4	0	4	0	0	logfile
✔	8E58	27906	2023-07-09	2022-08-20	3.0	3.15	3.06	3.2	0.007	0.69	0.0	0.12	15.85	0.00	2.199	7.40	0.91	5.4	94.5	0.1	0.19	0.58	0.82	2.81	3.2	0.002	0.64	0.0	0.06	16.35	0.00	2.189	6.69	1.36	5.5	94.5	0.0	0.56	0.32	0.61	0.84	2.60	18449	2247	12	0	28	0	0	logfile
✔	7A2i	11625	2023-07-05	2020-08-18	3.3	3.94	3.40	3.8	0.004	0.62	0.0	0.04	12.87	0.00	2.232	6.57	0.00	7.0	93.0	0.0	-1.94	0.81	0.84	2.69	3.8	0.002	0.53	0.0	0.04	13.99	0.00	2.238	6.00	0.00	4.3	95.7	0.0	-0.30	1.20	0.82	0.85	2.44	9196	1217	2	0	1	0	0	logfile
✔	7JPV	22424	2023-07-09	2020-08-10	3.4	3.54	—	3.5	0.006	0.76	0.0	0.04	18.05	0.00	2.040	13.82	7.64	6.6	93.3	0.2	-3.99	0.66	0.83	2.74	3.5	0.002	0.58	0.0	0.04	17.24	0.00	2.159	8.14	0.36	5.2	94.8	0.0	-0.51	0.50	0.64	0.84	2.42	18288	2227	5	0	11	0	0	logfile
✔	7QN8	14070	2023-07-08	2021-12-20	3.1	3.39	—	3.2	0.003	0.46	0.0	0.04	8.31	0.00	2.247	3.93	0.34	0.5	99.5	0.0	2.21	0.79	0.86	3.96	3.1	0.002	0.60	0.0	0.04	13.15	0.00	2.165	7.74	0.68	1.4	98.6	0.0	1.83	0.81	0.80	0.90	3.98	16755	1992	19	0	32	0	0	logfile
✔	7YJM	33874	2023-07-05	2022-07-20	3.2	3.29	3.09	3.2	0.007	1.08	0.0	0.06	19.57	0.00	1.946	17.47	17.31	9.4	89.4	1.2	-4.69	0.74	0.88	2.07	3.2	0.002	0.62	0.0	0.04	17.02	0.00	2.217	4.66	0.10	4.3	95.5	0.2	-0.83	0.51	0.73	0.89	2.39	8895	1120	7	0	2	0	0	logfile
✔	7RPK	24617	2023-07-05	2021-08-03	2.7	2.92	2.71	2.9	0.015	1.75	1.0	0.10	14.28	0.01	1.695	0.59	0.21	3.0	97.0	0.0	0.02	0.63	0.80	4.47	2.9	0.002	0.60	0.0	0.04	15.57	0.00	2.225	6.54	1.24	2.3	97.7	0.0	2.44	1.02	0.70	0.86	3.40	10018	1104	5	0	40	42	0	logfile
✔	8H10	34420	2023-07-11	2022-09-30	2.99	3.22	3.06	3.2	0.008	0.90	0.0	0.05	12.91	0.01	2.304	2.85	0.64	3.1	96.9	0.0	-1.07	0.81	0.85	2.83	3.2	0.002	0.54	0.0	0.04	14.57	0.00	2.225	4.93	1.31	2.8	97.2	0.0	-0.01	0.41	0.82	0.87	2.89	24882	3078	9	0	54	0	0	logfile

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