Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6TAR	10425	2023-02-18	2019-10-30	2.8	2.81	—	3.7	0.005	0.91	0.0	0.06	14.53	0.01	2.319	5.38	0.69	8.5	91.5	0.0	-3.91	0.62	0.81	1.84	3.7	0.002	0.61	0.0	0.04	17.33	0.00	2.267	4.70	3.75	6.5	93.5	0.0	0.67	0.65	0.62	0.82	1.49	6715	820	5	0	0	0	0	logfile
✔	7A96	11686	2023-02-27	2020-09-01	4.8	5.70	4.94	4.9	0.003	0.49	1.0	0.04	5.85	0.00	2.236	3.91	0.82	10.8	89.2	0.0	-4.46	0.88	0.77	—	4.9	0.002	0.63	0.0	0.04	9.04	0.00	2.114	10.16	0.00	3.3	96.6	0.0	-0.85	0.87	0.89	0.82	—	29811	3783	4	0	0	0	0	logfile
✔	7NT6	12584	2023-02-25	2021-03-09	4.3	4.34	3.99	3.3	0.012	2.07	0.0	0.15	8.75	0.01	2.119	1.13	0.00	4.0	95.6	0.3	-2.44	0.72	0.76	—	3.3	0.002	0.62	0.0	0.05	8.09	0.00	2.161	2.67	0.00	4.4	95.6	0.0	1.97	0.64	0.71	0.71	—	24128	5582	17	90	0	0	0	logfile
✔	7PTY	13643	2023-02-20	2021-09-27	4.63	5.10	—	4.5	0.003	0.68	0.0	0.04	13.76	0.00	2.199	25.20	0.00	10.9	89.1	0.0	-1.41	0.88	0.76	—	4.5	0.002	0.63	0.0	0.04	13.82	0.00	2.163	16.37	0.00	7.9	92.1	0.0	-0.80	0.39	0.89	0.77	—	13433	1715	2	0	0	0	0	logfile
✔	7P0Z	13153	2023-02-20	2021-07-01	2.43	2.02	2.41	2.2	0.016	0.94	0.0	0.06	14.02	0.01	2.141	7.29	0.00	4.3	95.7	0.0	1.90	0.83	0.86	2.91	2.3	0.002	0.49	0.0	0.03	18.12	0.00	2.239	4.38	1.64	0.7	99.3	0.0	5.47	0.55	0.84	0.87	2.18	12873	1652	7	0	0	0	0	logfile
✔	7VSH	32111	2023-02-19	2021-10-26	3.4	3.00	3.26	3.3	0.005	1.10	0.0	0.04	14.07	0.01	1.964	7.02	0.25	6.1	93.9	0.0	-1.53	0.70	0.83	3.17	3.3	0.002	0.53	0.0	0.04	15.62	0.00	2.010	7.29	0.08	5.1	94.9	0.0	-0.34	0.37	0.70	0.86	2.64	10992	1352	5	0	8	0	0	logfile
✔	6TAS	10426	2023-02-18	2019-10-30	2.75	2.69	—	3.8	0.006	0.87	4.0	0.06	14.84	0.01	2.094	12.58	0.11	7.7	92.3	0.0	-1.28	0.53	0.75	2.28	2.7	0.002	0.58	0.0	0.03	17.99	0.00	2.213	5.25	3.06	3.8	96.2	0.0	1.04	0.57	0.58	0.80	2.21	8552	1044	10	0	2	0	0	logfile
✔	7AKV	11814	2023-02-17	2020-10-02	3.6	3.04	3.41	3.7	0.004	0.65	0.0	0.04	14.25	0.00	2.005	76.42	0.16	17.7	82.2	0.1	-4.19	0.81	0.82	2.44	3.7	0.002	0.55	0.0	0.04	16.00	0.00	2.063	70.95	0.47	12.5	87.4	0.1	-3.09	0.86	0.81	0.82	1.88	6201	799	2	0	0	0	245	logfile
✔	7R8C	24315	2023-02-18	2021-06-26	3.7	4.19	—	4.1	0.002	0.49	0.0	0.04	12.82	0.00	2.073	6.73	0.21	4.8	95.2	0.0	-1.63	0.68	0.85	1.76	4.1	0.002	0.66	0.0	0.04	14.79	0.00	2.156	8.76	0.21	5.1	94.9	0.0	1.17	1.05	0.71	0.87	1.83	8538	1090	2	0	0	0	0	logfile
✔	7NSC	12564	2023-02-19	2021-03-05	3.3	3.46	3.32	3.4	0.005	0.71	0.0	0.04	14.50	0.00	1.732	9.65	0.10	8.3	91.7	0.0	-1.46	0.77	0.81	2.53	3.5	0.002	0.57	0.0	0.04	16.15	0.00	2.076	7.96	0.31	5.9	94.1	0.0	-0.21	0.89	0.76	0.82	1.32	9327	1230	4	0	0	0	0	logfile
✔	6N38	9341	2023-02-25	2018-11-14	3.7	3.82	—	3.8	0.013	1.29	0.0	0.08	10.00	0.01	2.216	1.17	0.31	2.7	97.2	0.1	0.10	0.78	0.79	2.54	3.7	0.002	0.65	0.0	0.04	14.39	0.00	2.192	6.42	0.16	2.2	97.8	0.0	0.89	0.83	0.81	0.83	2.23	24456	3098	11	0	39	0	0	logfile
✔	7R17	14233	2023-02-24	2022-02-02	3.7	4.04	3.84	3.9	0.003	0.50	0.0	0.04	12.77	0.01	2.221	5.15	0.50	3.1	96.9	0.0	0.37	0.83	0.83	2.01	3.9	0.002	0.51	0.0	0.04	14.34	0.00	2.136	7.04	0.12	3.1	96.9	0.0	0.63	0.42	0.82	0.82	1.45	23626	2981	7	0	22	0	0	logfile
✔	7AWA	11928	2023-02-17	2020-11-06	3.5	3.83	—	3.6	0.003	0.64	0.0	0.04	14.22	0.00	2.126	6.77	0.00	5.8	94.2	0.0	-2.52	0.57	0.81	2.14	3.7	0.002	0.52	0.0	0.04	15.06	0.00	2.163	6.96	0.00	3.7	96.3	0.0	-0.59	1.17	0.54	0.80	1.51	5310	328	1	0	0	0	2703	logfile
✔	7EoQ	31227	2023-02-25	2021-04-22	4.1	4.43	—	4.1	0.002	0.46	0.0	0.04	10.21	0.00	2.195	7.68	2.14	4.7	95.3	0.0	0.09	0.86	0.74	—	4.1	0.002	0.59	0.0	0.04	11.26	0.00	2.196	13.19	0.00	6.8	93.2	0.0	-0.65	1.22	0.89	0.79	—	24742	3144	8	0	10	0	0	logfile
✔	7WBL	32405	2023-02-20	2021-12-17	3.4	3.46	—	3.5	0.004	0.58	0.0	0.04	15.30	0.00	2.158	6.95	0.72	3.6	96.1	0.4	0.52	0.67	0.77	2.33	3.5	0.002	0.54	0.0	0.04	16.74	0.00	2.193	6.00	0.00	2.9	97.0	0.1	1.12	0.32	0.67	0.79	1.43	6484	791	3	0	5	0	0	logfile
✔	7MJP	23881	2023-02-21	2021-04-20	4.2	4.40	—	4.3	0.007	1.11	0.0	0.07	7.09	0.01	1.477	2.76	0.00	9.1	90.9	0.0	-1.16	0.51	0.65	—	4.4	0.002	0.59	0.0	0.04	5.47	0.00	2.285	0.87	0.00	6.8	93.2	0.0	-0.36	0.44	0.56	0.69	—	14163	2818	10	0	8	0	0	logfile
✔	7YZP	14393	2023-02-22	2022-02-21	4.0	4.15	4.02	4.0	0.003	0.62	1.0	0.04	17.63	0.00	1.593	8.29	0.00	4.2	95.8	0.0	0.73	0.83	0.78	—	4.0	0.002	0.63	0.0	0.04	19.11	0.00	2.004	11.04	0.07	3.8	96.2	0.0	0.76	0.37	0.84	0.79	—	14107	1633	9	59	8	0	0	logfile
✔	8AT6	15635	2023-02-20	2022-08-22	3.7	3.84	3.67	3.7	0.003	0.64	0.0	0.04	16.25	0.00	2.222	9.66	0.00	5.9	93.8	0.3	0.49	0.89	0.85	1.40	3.6	0.002	0.54	0.0	0.04	16.67	0.00	2.194	9.06	0.07	5.4	94.4	0.2	0.92	0.25	0.88	0.85	1.30	12583	1580	6	0	0	0	0	logfile
✔	7DTT	30853	2023-02-20	2021-01-06	3.8	3.67	—	3.3	0.010	0.98	0.0	0.07	14.11	0.01	2.230	5.19	0.00	9.7	90.1	0.1	-4.29	0.72	0.82	2.94	3.3	0.002	0.54	0.0	0.05	14.75	0.00	2.250	6.54	0.00	5.3	94.7	0.0	-0.48	0.39	0.72	0.81	2.18	11204	1558	8	0	22	0	0	logfile
✔	7VYF	32203	2023-02-26	2021-11-14	2.8	2.86	—	2.8	0.007	0.75	0.0	0.05	13.89	0.01	2.078	6.44	0.03	3.9	96.0	0.1	-0.15	0.74	0.88	4.24	2.8	0.002	0.52	0.0	0.04	16.03	0.00	2.169	6.28	0.95	3.5	96.4	0.0	0.37	0.32	0.75	0.89	3.80	28456	3543	27	0	17	0	0	logfile

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