Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7JK4	22361	2022-07-05	2020-07-27	3.4	3.91	3.47	3.6	0.006	0.95	0.0	0.05	17.55	0.01	2.102	4.64	0.32	4.1	95.9	0.0	-2.88	0.87	0.88	2.64	3.6	0.002	0.54	0.0	0.04	18.25	0.00	1.953	8.20	0.05	2.2	97.8	0.0	1.75	0.55	0.88	0.90	2.14	21717	2531	13	68	8	0	0	logfile
✔	7JL1	22369	2022-07-03	2020-07-29	3.9	3.61	—	3.7	0.011	1.38	0.0	0.05	15.46	0.00	1.727	7.21	0.14	4.5	95.5	0.0	0.42	0.57	0.77	1.98	3.7	0.002	0.58	0.0	0.04	17.30	0.00	1.839	6.42	0.43	2.0	98.0	0.0	0.83	1.55	0.59	0.79	1.61	7132	827	5	28	4	0	0	logfile
✔	7NCK	12269	2022-07-03	2021-01-28	3.18	3.22	2.86	3.4	0.011	2.19	6.0	0.10	11.66	0.01	2.583	0.37	3.33	4.0	96.0	0.0	-2.54	0.39	0.71	4.89	3.4	0.002	0.57	0.0	0.06	15.96	0.00	2.157	6.82	0.74	3.0	97.0	0.0	-2.17	0.96	0.35	0.72	2.23	5430	384	6	0	0	0	2778	logfile
✔	6L7E	0843	2022-07-06	2019-11-01	3.2	3.28	—	3.2	0.004	0.78	0.0	0.05	8.54	0.01	2.217	3.34	0.05	3.3	96.7	0.0	-4.72	0.78	0.85	3.48	3.2	0.002	0.54	0.0	0.04	14.22	0.00	2.063	6.37	0.12	2.5	97.5	0.0	1.33	2.01	0.79	0.88	3.26	97400	12270	5	0	0	0	0	logfile
✔	7CMV	30411	2022-07-03	2020-07-29	2.7	2.91	—	2.9	0.005	0.49	0.0	0.04	12.45	0.00	2.032	4.07	0.00	1.5	98.5	0.0	2.95	0.61	0.79	2.85	2.9	0.002	0.52	0.0	0.04	15.66	0.00	2.173	5.56	1.77	1.9	98.1	0.0	1.98	0.46	0.64	0.83	2.86	8775	1123	5	0	1	0	0	logfile
✔	7KAT	22783	2022-07-03	2020-10-01	4.4	5.04	4.41	4.5	0.002	0.51	0.0	0.04	11.32	0.00	2.185	6.94	0.00	1.9	98.1	0.0	-0.63	0.65	0.83	—	4.5	0.002	0.57	0.0	0.04	12.07	0.00	2.070	9.45	0.00	2.1	97.9	0.0	2.26	1.32	0.65	0.85	—	10431	1340	6	0	0	0	0	logfile
✔	7JK3	22360	2022-07-05	2020-07-27	3.4	4.04	3.41	3.5	0.005	0.87	0.0	0.05	17.58	0.01	1.709	3.67	0.18	3.1	96.9	0.0	-3.87	0.89	0.87	2.19	3.5	0.002	0.58	0.0	0.04	18.19	0.00	1.985	7.30	0.05	2.7	97.3	0.0	1.50	1.32	0.90	0.89	1.82	21661	2528	13	66	8	0	0	logfile
✔	7JGF	22325	2022-07-03	2020-07-19	4.69	4.81	—	4.8	0.002	0.62	0.0	0.04	13.16	0.01	2.109	26.85	0.41	4.6	95.4	0.0	-0.87	0.39	0.43	—	4.8	0.002	0.48	0.0	0.04	13.28	0.00	2.151	52.69	0.41	5.2	94.8	0.0	1.10	0.63	0.41	0.45	—	4477	532	1	0	0	0	30	logfile
✔	6X15	21989	2022-07-03	2020-05-18	3.05	3.20	—	3.2	0.009	1.26	0.0	0.05	19.04	0.01	2.281	3.63	0.00	3.1	96.9	0.0	-3.80	0.73	0.87	2.90	3.2	0.002	0.52	0.0	0.04	15.47	0.00	2.196	6.17	0.00	2.9	97.1	0.0	1.69	0.44	0.73	0.88	2.53	10026	1260	9	0	51	9	0	logfile
✔	6X16	21990	2022-07-03	2020-05-18	3.39	3.34	—	3.4	0.006	0.99	0.0	0.05	14.76	0.01	2.322	3.97	0.31	4.8	95.2	0.0	-3.86	0.40	0.73	1.79	3.4	0.002	0.56	0.0	0.04	15.07	0.00	2.191	8.24	0.00	3.5	96.5	0.0	0.91	0.32	0.46	0.78	1.38	9438	1248	6	0	6	0	0	logfile
✔	7JM9	22390	2022-07-07	2020-07-31	2.5	2.71	2.65	2.7	0.009	1.47	0.0	0.07	13.53	0.00	2.291	3.08	0.56	1.1	98.9	0.0	0.10	0.62	0.82	5.25	2.7	0.002	0.46	0.0	0.04	13.55	0.00	2.085	6.38	1.27	1.4	98.6	0.0	3.63	0.72	0.64	0.85	4.54	41136	2328	36	0	168	156	18876	logfile
✔	6SKo	10230	2022-07-06	2019-08-16	3.4	3.87	—	3.6	0.014	2.11	21.0	0.11	15.68	0.02	1.887	1.14	0.24	6.0	94.0	0.0	-3.05	0.73	0.69	2.26	3.5	0.002	0.57	0.0	0.04	16.36	0.00	1.824	6.68	0.12	3.3	96.7	0.0	0.30	0.94	0.77	0.80	1.87	31553	1955	12	16	10	0	15838	logfile
✔	6X0V	21985	2022-07-02	2020-05-17	4.5	4.37	—	4.4	0.003	0.62	1.0	0.04	11.58	0.00	2.285	15.16	4.48	3.5	96.0	0.5	-2.45	0.40	0.74	—	4.4	0.002	0.46	0.0	0.04	13.09	0.00	2.230	19.17	0.00	6.0	94.0	0.0	2.59	1.22	0.40	0.75	—	1384	211	4	0	0	0	62	logfile
✔	6XF6	22162	2022-07-05	2020-06-15	4.0	4.88	4.07	4.1	0.004	0.77	0.0	0.06	11.35	0.01	2.249	3.78	0.21	2.6	97.4	0.0	0.03	0.85	0.78	—	4.2	0.002	0.58	0.0	0.04	12.73	0.00	2.109	10.16	0.09	2.9	97.1	0.0	0.50	1.22	0.87	0.83	—	22938	2928	18	0	59	0	0	logfile
✔	6W1Z	21519	2022-07-08	2020-03-04	2.7	3.32	—	3.1	0.027	1.78	0.0	0.11	12.17	0.01	1.874	10.92	0.66	3.1	96.7	0.3	-0.80	0.62	0.48	3.58	3.1	0.002	0.61	0.0	0.04	14.48	0.00	2.146	8.77	0.91	2.2	97.7	0.1	1.08	1.07	0.83	0.88	3.34	48536	6156	27	0	36	0	0	logfile
✔	7NCA	12264	2022-07-03	2021-01-28	3.47	3.58	3.04	3.6	0.012	2.04	0.0	0.08	10.64	0.01	2.645	0.00	0.19	5.5	94.5	0.0	-2.04	0.73	0.85	4.45	3.7	0.002	0.53	0.0	0.05	13.06	0.00	2.393	1.34	0.19	3.8	96.2	0.0	-3.13	0.76	0.70	0.85	3.61	10428	732	12	0	0	0	5376	logfile
✔	7JL0	22368	2022-07-03	2020-07-29	4.3	3.67	—	4.0	0.008	1.40	1.0	0.05	14.11	0.00	1.860	13.90	0.14	6.6	93.4	0.0	-1.52	0.75	0.77	—	4.0	0.002	0.91	0.0	0.04	13.95	0.00	1.962	10.63	0.00	3.5	96.5	0.0	0.37	1.43	0.77	0.79	—	7354	842	5	28	4	0	0	logfile
✔	7BWM	30233	2022-07-04	2020-04-15	2.9	2.97	—	2.9	0.005	0.78	0.0	0.05	14.21	0.00	2.048	7.48	7.21	5.8	94.0	0.3	-3.28	0.76	0.85	4.49	2.9	0.002	0.61	0.0	0.04	15.57	0.00	2.132	6.73	2.05	4.9	95.1	0.0	-0.79	1.13	0.77	0.85	3.39	9532	1219	1	0	0	0	0	logfile
✔	6X3F	22021	2022-07-03	2020-05-21	3.03	3.23	—	3.3	0.006	0.93	0.0	0.06	14.72	0.01	2.351	3.78	0.00	5.0	95.0	0.0	-6.78	0.58	0.85	3.24	3.3	0.002	0.62	0.0	0.04	15.84	0.00	2.290	6.36	0.29	4.0	96.0	0.0	0.02	0.96	0.55	0.85	1.97	9366	1227	6	0	3	0	0	logfile
✔	7KRZ	23013	2022-07-05	2020-11-20	3.2	2.56	3.10	2.8	0.007	0.80	0.0	0.05	14.00	0.00	1.906	7.90	0.19	5.8	94.2	0.0	-2.84	0.74	0.77	3.22	2.8	0.002	0.55	0.0	0.04	15.44	0.00	2.055	7.48	0.04	4.2	95.8	0.0	0.42	0.50	0.78	0.79	2.88	24745	3127	13	0	28	0	0	logfile

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