Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3JCD	6549	2022-07-08	2015-12-01	3.7	5.07	—	19.0	0.006	0.83	0.0	0.04	14.69	0.00	1.289	14.69	0.02	9.6	85.8	4.5	-2.43	0.34	0.04	0.30	3.4	0.009	1.30	3.0	0.06	19.34	0.01	1.552	58.33	0.29	15.3	83.3	1.3	-4.06	2.01	0.67	0.38	0.30	147815	5982	57	4715	0	0	0	logfile
✔	6C9Y	7438	2022-07-06	2018-01-29	4.25	4.33	—	9.7	0.008	1.53	5.0	0.08	13.66	0.01	2.064	6.66	5.32	7.8	90.7	1.5	-4.02	0.50	0.12	—	4.1	0.004	0.83	0.0	0.05	13.52	0.01	2.106	21.09	0.03	7.0	92.9	0.1	-1.54	2.44	0.61	0.39	—	28920	3685	7	0	3	0	0	logfile
✔	7NK1	12428	2022-07-06	2021-02-17	4.22	4.30	—	4.0	0.004	0.69	0.0	0.04	13.56	0.01	1.907	9.03	0.19	4.3	95.7	0.0	-0.71	0.46	0.19	—	4.4	0.011	1.01	1.0	0.04	14.16	0.01	1.847	23.47	0.00	6.4	93.6	0.0	-1.30	1.60	0.62	0.41	—	28747	1791	6	23	0	0	13868	logfile
✔	6EU1	3956	2022-07-07	2017-10-27	3.4	3.40	—	6.6	0.005	1.13	0.0	0.06	12.93	0.01	1.732	6.56	0.50	16.1	83.5	0.4	-5.70	0.20	0.01	0.29	3.3	0.013	1.36	3.0	0.05	16.40	0.01	1.726	25.40	0.21	17.8	81.9	0.3	-4.08	2.02	0.48	0.41	0.16	40547	5012	24	43	7	0	0	logfile
✔	7APK	11857	2022-07-04	2020-10-17	3.3	3.26	—	3.5	0.004	0.81	0.0	0.05	8.50	0.01	2.256	4.14	0.10	4.7	95.2	0.1	-2.73	0.41	0.22	0.13	2.9	0.007	0.84	1.0	0.04	12.90	0.00	1.695	14.03	0.09	5.7	94.1	0.1	1.02	1.04	0.49	0.42	0.88	72697	9893	30	0	74	0	0	logfile
✔	3KTT	5148	2022-07-03	2009-11-25	4.0	2.33	—	4.5	0.020	2.86	20.0	0.20	15.20	0.01	1.652	180.45	7.82	6.3	89.4	4.3	-0.59	0.27	0.28	—	1.9	0.006	1.32	0.0	0.06	17.22	0.01	2.001	37.19	1.22	10.2	88.6	1.2	-2.54	1.70	0.31	0.43	—	3855	513	1	0	0	0	0	logfile
✔	7WoT	32658	2022-07-06	2022-01-22	3.73	4.26	—	3.8	0.010	1.69	284.0	0.10	15.82	0.01	1.016	24.11	4.41	9.4	88.4	2.2	-3.07	0.49	0.33	0.06	3.9	0.009	1.00	2.0	0.05	16.48	0.01	1.624	22.10	0.13	9.9	89.8	0.3	-1.23	1.08	0.56	0.44	0.23	133827	17285	24	0	0	0	0	logfile
✔	7Woo	32653	2022-07-04	2022-01-22	3.71	4.08	—	3.9	0.010	1.69	139.0	0.10	15.86	0.01	1.041	23.20	4.33	9.3	88.5	2.2	-3.11	0.47	0.44	0.31	3.9	0.003	0.81	0.0	0.04	16.47	0.00	2.074	14.80	0.32	8.3	91.4	0.3	-0.41	1.64	0.48	0.44	0.13	66949	8644	12	0	0	0	0	logfile
✔	1oED	1044	2022-07-03	2003-03-24	4.0	3.94	—	10.4	0.014	2.29	3.0	0.10	17.23	0.01	1.183	225.04	19.76	5.2	92.7	2.1	-3.67	0.39	0.18	—	9.0	0.004	1.03	0.0	0.05	15.86	0.01	2.151	21.91	0.52	2.1	97.9	0.0	1.73	2.85	0.63	0.45	—	4926	636	5	0	0	0	0	logfile
✔	7JGF	22325	2022-07-03	2020-07-19	4.69	4.81	—	4.8	0.002	0.62	0.0	0.04	13.16	0.01	2.109	26.85	0.41	4.6	95.4	0.0	-0.87	0.39	0.43	—	4.8	0.002	0.48	0.0	0.04	13.28	0.00	2.151	52.69	0.41	5.2	94.8	0.0	1.10	0.63	0.41	0.45	—	4477	532	1	0	0	0	30	logfile
✔	7FG3	31577	2022-07-03	2021-07-25	3.9	3.62	—	4.0	0.006	1.13	0.0	0.06	14.47	0.01	1.929	37.34	0.00	18.5	80.8	0.7	-4.60	0.22	0.47	-0.27	4.0	0.009	0.98	0.0	0.05	16.79	0.01	2.094	24.09	0.30	15.7	83.7	0.6	-3.71	0.78	0.23	0.45	0.29	9054	1166	2	0	0	0	0	logfile
✔	7LVT	23542	2022-07-04	2021-02-26	4.6	4.32	—	4.0	0.008	1.36	3.0	0.09	13.04	0.01	2.057	6.46	0.96	6.4	93.3	0.3	-2.96	0.68	0.65	—	3.8	0.003	0.74	0.0	0.04	12.83	0.00	2.126	11.78	0.00	5.5	94.3	0.1	0.09	16.94	0.56	0.46	—	18944	2876	4	0	0	0	0	logfile
✔	7JGJ	22328	2022-07-03	2020-07-19	4.8	7.06	—	6.5	0.013	2.22	17.0	0.31	17.49	0.01	1.656	7.23	12.68	7.2	91.6	1.2	-2.09	0.88	0.68	—	6.5	0.003	0.76	0.0	0.04	13.54	0.00	2.130	27.09	0.00	7.7	92.2	0.1	-2.19	1.26	0.84	0.48	—	13324	1707	3	0	0	0	0	logfile
✔	6H05	0108	2022-07-07	2018-07-06	2.9	3.15	—	3.5	0.016	1.09	0.0	0.07	9.74	0.01	0.426	17.81	0.00	8.5	91.5	0.0	-5.50	0.36	0.13	0.50	3.1	0.007	1.02	0.0	0.05	15.81	0.01	1.535	23.05	2.30	5.2	94.8	0.0	-1.96	1.64	0.58	0.48	0.74	44544	5664	24	0	0	0	0	logfile
✔	6EU2	3957	2022-07-07	2017-10-27	3.4	3.45	—	6.0	0.004	1.04	0.0	0.06	11.35	0.01	1.787	5.07	0.40	13.0	86.5	0.5	-5.22	0.27	0.04	0.18	3.4	0.011	1.17	3.0	0.05	15.41	0.01	1.507	19.10	0.26	11.6	88.1	0.3	-2.77	1.48	0.55	0.48	0.07	38329	4825	22	0	7	0	0	logfile
✔	6HDD	0204	2022-07-05	2018-08-17	4.5	5.28	—	4.4	0.009	1.36	3.0	0.08	12.60	0.01	2.220	12.08	1.07	18.3	81.6	0.1	-6.11	0.74	0.42	—	8.5	0.004	1.00	0.0	0.05	13.37	0.01	1.472	25.40	0.00	17.3	82.3	0.4	-3.48	5.56	0.82	0.49	—	28154	3605	7	0	0	0	0	logfile
✔	7K8D	22728	2022-07-03	2020-09-26	4.33	4.48	—	4.7	0.004	1.12	0.0	0.06	12.53	0.01	2.205	23.61	1.86	4.3	95.7	0.0	-2.98	0.33	0.40	—	4.7	0.003	0.83	0.0	0.04	13.33	0.01	2.120	13.72	0.00	4.3	95.7	0.0	0.70	1.45	0.41	0.49	—	5529	725	1	0	0	0	0	logfile
✔	7MDW	23782	2022-07-03	2021-04-06	3.58	2.25	3.45	1.5	0.002	0.54	0.0	0.04	12.63	0.00	2.293	8.46	0.00	6.5	93.5	0.0	-1.58	0.52	0.44	1.65	1.5	0.004	0.69	0.0	0.05	14.82	0.00	2.157	18.28	0.56	11.4	88.6	0.0	-3.10	1.35	0.56	0.49	1.70	3392	435	4	0	1	0	0	logfile
✔	7NKC	12437	2022-07-06	2021-02-17	4.46	4.76	—	4.6	0.004	0.72	0.0	0.04	13.69	0.01	1.795	9.79	0.25	4.3	95.7	0.1	-0.76	0.51	0.30	—	4.7	0.011	0.97	1.0	0.04	14.20	0.01	1.829	18.97	0.00	5.7	94.3	0.0	-0.82	2.33	0.63	0.50	—	28788	1795	6	23	0	0	13868	logfile
✔	7U13	26276	2022-07-03	2022-02-19	2.9	3.67	—	4.2	0.017	2.41	0.0	0.07	17.78	0.01	2.120	29.95	6.30	11.3	88.0	0.8	-3.06	0.30	0.47	1.37	4.2	0.016	1.69	0.0	0.06	18.32	0.01	1.980	40.70	3.15	11.0	89.0	0.0	-3.17	3.39	0.28	0.50	1.09	3456	405	6	0	12	0	0	logfile

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