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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7CZ5 | 31824 | 2023-02-18 | 2020-09-07 | 2.6 | 2.14 | — | 14.0 | 0.004 | 0.69 | 0.0 | 0.05 | 13.25 | 0.00 | 2.186 | 6.27 | 0.00 | 3.3 | 96.7 | 0.0 | -2.04 | 0.25 | 0.05 | 0.50 | 10.0 | 0.003 | 0.65 | 0.0 | 0.04 | 15.11 | 0.00 | 2.090 | 14.88 | 0.78 | 5.0 | 95.0 | 0.0 | -0.37 | 0.85 | 0.33 | 0.18 | 0.67 | 8336 | 1046 | 11 | 0 | 3 | 3 | 0 | logfile |
✔ | 5VZL | 8749 | 2023-02-21 | 2017-05-29 | 3.9 | 4.38 | — | 19.0 | 0.006 | 0.96 | 0.0 | 0.05 | 14.28 | 0.01 | 2.216 | 7.72 | 0.25 | 8.4 | 91.6 | 0.0 | -4.13 | 0.31 | 0.03 | -0.03 | 17.0 | 0.002 | 0.66 | 0.0 | 0.04 | 15.70 | 0.00 | 1.245 | 12.48 | 0.50 | 5.0 | 95.0 | 0.0 | -1.31 | 1.26 | 0.38 | 0.19 | 0.61 | 13915 | 1451 | 3 | 115 | 1 | 0 | 0 | logfile |
✔ | 6PB1 | 26104 | 2023-02-18 | 2019-06-12 | 2.8 | 2.98 | — | 40.0 | 0.003 | 0.79 | 0.0 | 0.06 | 8.98 | 0.01 | 2.288 | 4.32 | 0.00 | 1.9 | 98.1 | 0.0 | -2.93 | 0.05 | 0.02 | 0.34 | 2.9 | 0.003 | 0.65 | 0.0 | 0.04 | 14.12 | 0.00 | 2.156 | 12.00 | 2.15 | 3.2 | 96.8 | 0.0 | -0.89 | 2.36 | 0.11 | 0.20 | 0.34 | 8785 | 1069 | 7 | 0 | 9 | 0 | 0 | logfile |
✔ | 8A1S | 15086 | 2023-02-25 | 2022-06-02 | 4.0 | 3.83 | 3.95 | 37.0 | 0.008 | 0.74 | 0.0 | 0.05 | 10.01 | 0.00 | 1.988 | 10.18 | 0.97 | 3.9 | 96.0 | 0.2 | -0.24 | 0.26 | 0.00 | — | 3.5 | 0.004 | 0.79 | 0.0 | 0.05 | 13.07 | 0.01 | 1.990 | 16.76 | 0.27 | 4.6 | 95.2 | 0.2 | -1.37 | 1.67 | 0.33 | 0.21 | — | 67152 | 8528 | 32 | 0 | 32 | 0 | 0 | logfile |
✔ | 6Qi8 | 4552 | 2023-02-21 | 2019-01-18 | 3.75 | 3.92 | — | 10.4 | 0.004 | 0.91 | 0.0 | 0.05 | 16.35 | 0.01 | 1.999 | 4.27 | 0.19 | 5.5 | 94.5 | 0.0 | -5.84 | 0.17 | 0.02 | 0.43 | 9.9 | 0.003 | 0.85 | 0.0 | 0.04 | 17.56 | 0.00 | 2.143 | 15.66 | 0.19 | 7.7 | 92.3 | 0.0 | -2.16 | 1.53 | 0.32 | 0.22 | 0.51 | 14789 | 1907 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 8GWE | 34310 | 2023-02-24 | 2022-09-16 | 2.66 | 3.19 | 2.77 | 16.0 | 0.009 | 0.97 | 5.0 | 0.06 | 17.61 | 0.01 | 1.065 | 13.66 | 5.00 | 8.4 | 91.2 | 0.3 | -1.93 | 0.39 | 0.09 | 0.45 | 10.1 | 0.003 | 0.74 | 0.0 | 0.04 | 17.58 | 0.00 | 1.950 | 15.87 | 3.34 | 8.5 | 91.3 | 0.2 | -1.91 | 1.11 | 0.44 | 0.22 | 0.12 | 22040 | 2668 | 15 | 56 | 10 | 1 | 0 | logfile |
✔ | 6FLQ | 4275 | 2023-02-27 | 2018-01-26 | 3.6 | 3.93 | 3.76 | 40.0 | 0.016 | 1.33 | 0.0 | 0.07 | 14.73 | 0.01 | 1.897 | 5.97 | 1.40 | 10.8 | 89.1 | 0.1 | -4.32 | 0.16 | 0.02 | 0.21 | 3.8 | 0.009 | 1.33 | 0.0 | 0.06 | 17.55 | 0.01 | 1.844 | 30.47 | 0.70 | 13.4 | 86.4 | 0.2 | -2.72 | 2.16 | 0.28 | 0.24 | 0.30 | 30201 | 3868 | 10 | 91 | 3 | 0 | 0 | logfile |
✔ | 6H5i | 0140 | 2023-02-21 | 2018-07-24 | 3.9 | 3.87 | — | 23.0 | 0.006 | 0.81 | 0.0 | 0.05 | 10.47 | 0.01 | 2.196 | 2.64 | 0.17 | 4.3 | 95.7 | 0.0 | -1.74 | 0.29 | 0.06 | 0.15 | 3.7 | 0.003 | 0.67 | 0.0 | 0.04 | 15.36 | 0.00 | 2.097 | 14.22 | 0.32 | 4.1 | 95.9 | 0.0 | 1.46 | 1.26 | 0.37 | 0.24 | 0.27 | 43900 | 5392 | 26 | 0 | 0 | 0 | 0 | logfile |
✔ | 6CAJ | 26098 | 2023-02-25 | 2018-01-31 | 2.8 | 3.39 | — | 68.0 | 0.008 | 0.88 | 0.0 | 0.17 | 9.84 | 0.01 | 1.467 | 5.88 | 0.24 | 4.5 | 95.5 | 0.0 | -3.63 | 0.11 | 0.02 | -0.06 | 3.2 | 0.007 | 1.06 | 1.0 | 0.06 | 13.95 | 0.01 | 1.962 | 26.36 | 3.07 | 9.5 | 90.3 | 0.2 | -1.77 | 1.67 | 0.17 | 0.25 | 0.12 | 24295 | 3210 | 11 | 0 | 1 | 0 | 0 | logfile |
✔ | 6KFK | 9974 | 2023-02-24 | 2019-07-08 | 4.1 | 4.28 | — | 15.0 | 0.015 | 1.99 | 0.0 | 0.08 | 10.94 | 0.01 | 1.444 | 20.13 | 0.00 | 8.2 | 89.5 | 2.2 | -1.03 | 0.14 | 0.06 | — | 4.2 | 0.004 | 0.94 | 0.0 | 0.05 | 12.81 | 0.00 | 2.059 | 20.22 | 0.00 | 8.3 | 90.8 | 0.9 | -1.16 | 2.72 | 0.24 | 0.30 | — | 65076 | 8844 | 22 | 0 | 0 | 0 | 0 | logfile |
✔ | 7N9Y | 24264 | 2023-02-18 | 2021-06-18 | 4.8 | 4.30 | — | 2.2 | 0.019 | 1.07 | 0.0 | 0.00 | 6.04 | 0.00 | 2.538 | 0.59 | 0.00 | 8.5 | 91.1 | 0.3 | -1.98 | 0.49 | 0.33 | — | 2.2 | 0.003 | 1.01 | 0.0 | 0.00 | 4.45 | 0.00 | 2.547 | 7.13 | 0.00 | 19.3 | 80.3 | 0.4 | -4.00 | 2.62 | 0.52 | 0.31 | — | 7515 | 2505 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8D43 | 27173 | 2023-02-18 | 2022-06-01 | 2.88 | 3.12 | 2.94 | 5.9 | 0.004 | 0.83 | 1.0 | 0.06 | 18.40 | 0.01 | 1.371 | 8.43 | 5.48 | 6.5 | 93.5 | 0.0 | -1.48 | 0.17 | -0.02 | 0.37 | 3.2 | 0.004 | 0.91 | 0.0 | 0.05 | 18.51 | 0.01 | 2.131 | 21.79 | 3.34 | 7.1 | 92.8 | 0.1 | -1.69 | 2.70 | 0.41 | 0.35 | 1.05 | 7763 | 962 | 5 | 0 | 6 | 1 | 0 | logfile |
✔ | 7URi | 26713 | 2023-02-16 | 2022-04-22 | 2.6 | 2.67 | 2.95 | 2.6 | 0.009 | 1.37 | 0.0 | 0.12 | 25.77 | 0.01 | 2.201 | 7.31 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.05 | 0.34 | — | 2.6 | 0.008 | 1.44 | 0.0 | 0.07 | 23.84 | 0.01 | 2.072 | 23.68 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.06 | 0.08 | 0.38 | — | 1905 | 0 | 1 | 90 | 0 | 0 | 0 | logfile |
✔ | 7NK1 | 12428 | 2023-02-26 | 2021-02-17 | 4.22 | 4.30 | — | 4.0 | 0.004 | 0.69 | 0.0 | 0.04 | 13.56 | 0.01 | 1.907 | 9.03 | 0.19 | 4.3 | 95.7 | 0.0 | -0.71 | 0.46 | 0.19 | — | 4.4 | 0.004 | 0.68 | 0.0 | 0.04 | 14.15 | 0.00 | 1.835 | 21.70 | 0.00 | 6.8 | 93.2 | 0.0 | -1.16 | 1.62 | 0.62 | 0.41 | — | 28747 | 1791 | 6 | 23 | 0 | 0 | 13868 | logfile |
✔ | 6C9Y | 7438 | 2023-02-26 | 2018-01-29 | 4.25 | 4.33 | — | 9.7 | 0.008 | 1.53 | 5.0 | 0.08 | 13.66 | 0.01 | 2.064 | 6.62 | 5.32 | 7.8 | 90.7 | 1.5 | -4.02 | 0.50 | 0.12 | — | 4.1 | 0.004 | 0.86 | 0.0 | 0.05 | 13.78 | 0.01 | 2.008 | 22.62 | 0.00 | 7.9 | 92.0 | 0.1 | -1.85 | 3.63 | 0.63 | 0.42 | — | 28920 | 3685 | 7 | 0 | 3 | 0 | 0 | logfile |
✔ | 3KTT | 5148 | 2023-02-17 | 2009-11-25 | 4.0 | 2.33 | — | 4.5 | 0.020 | 2.86 | 20.0 | 0.20 | 15.20 | 0.01 | 1.652 | 179.94 | 7.82 | 6.3 | 89.4 | 4.3 | -0.59 | 0.27 | 0.28 | — | 2.1 | 0.005 | 1.24 | 0.0 | 0.05 | 17.17 | 0.01 | 2.010 | 31.44 | 0.49 | 9.2 | 89.6 | 1.2 | -2.49 | 2.03 | 0.31 | 0.42 | — | 3855 | 513 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6HDD | 0204 | 2023-02-26 | 2018-08-17 | 4.5 | 5.28 | — | 4.4 | 0.009 | 1.36 | 3.0 | 0.08 | 12.60 | 0.01 | 2.220 | 12.08 | 1.07 | 18.3 | 81.6 | 0.1 | -6.11 | 0.74 | 0.42 | — | 8.0 | 0.005 | 1.06 | 7.0 | 0.06 | 13.43 | 0.01 | 1.446 | 33.80 | 0.00 | 17.6 | 81.8 | 0.6 | -3.77 | 5.52 | 0.80 | 0.43 | — | 28154 | 3605 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PC2 | 13316 | 2023-02-26 | 2021-08-03 | 2.8 | 3.39 | — | 6.5 | 0.033 | 1.53 | 5.0 | 0.05 | 15.16 | 0.01 | 1.809 | 8.92 | 1.49 | 7.8 | 92.2 | 0.0 | -3.81 | 0.43 | 0.05 | -0.14 | 2.9 | 0.006 | 1.00 | 0.0 | 0.06 | 16.43 | 0.01 | 2.020 | 21.81 | 3.39 | 7.4 | 92.6 | 0.1 | -1.61 | 1.49 | 0.61 | 0.43 | 0.42 | 27063 | 3093 | 68 | 0 | 210 | 0 | 0 | logfile |
✔ | 7Woo | 32653 | 2023-02-26 | 2022-01-22 | 3.71 | 4.08 | — | 3.9 | 0.010 | 1.69 | 139.0 | 0.10 | 15.86 | 0.01 | 1.041 | 23.12 | 4.33 | 9.3 | 88.5 | 2.2 | -3.11 | 0.47 | 0.44 | 0.31 | 3.9 | 0.003 | 0.80 | 0.0 | 0.04 | 16.47 | 0.00 | 2.064 | 14.96 | 0.39 | 8.4 | 91.3 | 0.3 | -0.43 | 1.64 | 0.47 | 0.44 | 0.12 | 66949 | 8644 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LVT | 23542 | 2023-02-23 | 2021-02-26 | 4.6 | 4.32 | — | 4.0 | 0.008 | 1.36 | 3.0 | 0.09 | 13.04 | 0.01 | 2.057 | 6.37 | 0.96 | 6.4 | 93.3 | 0.3 | -2.96 | 0.68 | 0.65 | — | 3.8 | 0.003 | 0.72 | 0.0 | 0.04 | 12.98 | 0.00 | 2.193 | 12.43 | 0.00 | 5.4 | 94.4 | 0.1 | 0.32 | 16.94 | 0.55 | 0.45 | — | 18944 | 2876 | 4 | 0 | 0 | 0 | 0 | logfile |