Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7EGB	31111	2023-07-05	2021-03-24	3.3	3.51	—	34.0	0.008	1.11	62.0	0.07	15.43	0.01	1.322	21.13	3.22	7.3	91.9	0.8	-3.64	0.32	0.02	0.13	3.0	0.006	0.97	0.0	0.05	16.75	0.01	1.840	21.35	0.38	8.6	91.2	0.2	-1.17	1.17	0.43	0.22	0.25	113098	13887	63	138	18	0	0	logfile
✔	6H5i	0140	2023-07-03	2018-07-24	3.9	3.87	—	23.0	0.006	0.81	0.0	0.05	10.47	0.01	2.196	2.64	0.17	4.3	95.7	0.0	-1.74	0.29	0.06	0.15	3.7	0.003	0.67	0.0	0.04	15.36	0.00	2.097	14.22	0.32	4.1	95.9	0.0	1.46	1.26	0.37	0.24	0.27	43900	5392	26	0	0	0	0	logfile
✔	7W6P	32331	2023-07-04	2021-12-02	3.47	3.79	—	9.6	0.004	0.70	0.0	0.04	13.78	0.00	2.196	14.60	0.11	7.0	93.0	0.0	-0.94	0.22	0.11	0.18	8.7	0.003	0.68	0.0	0.04	15.37	0.00	2.199	14.66	0.44	5.7	94.3	0.0	-0.83	1.94	0.31	0.25	0.54	8408	1083	5	0	1	0	0	logfile
✔	6TQM	10555	2023-07-17	2019-12-16	3.8	4.34	3.78	20.0	0.014	0.98	0.0	0.12	15.01	0.01	2.083	4.06	1.40	14.5	85.5	0.0	-5.95	0.30	0.07	0.30	3.9	0.003	0.78	0.0	0.04	15.99	0.00	1.902	16.86	0.14	11.1	88.9	0.0	-3.64	1.33	0.39	0.26	0.42	39616	2578	6	0	4	0	19804	logfile
✔	6LTJ	0974	2023-07-16	2020-01-22	3.7	4.16	—	15.0	0.010	1.08	12.0	0.07	22.08	0.01	2.173	14.05	2.63	6.4	93.3	0.3	-3.67	0.46	0.08	0.04	3.6	0.004	0.79	0.0	0.04	22.52	0.00	2.045	22.04	0.34	4.6	95.4	0.0	-0.58	1.62	0.60	0.29	0.45	34283	3656	21	238	1	0	0	logfile
✔	7N9Y	24264	2023-07-04	2021-06-18	4.8	4.30	—	2.2	0.019	1.07	0.0	0.00	6.04	0.00	2.538	0.59	0.00	8.5	91.1	0.3	-1.98	0.49	0.33	—	2.2	0.003	1.01	0.0	0.00	4.81	0.00	2.550	7.73	0.00	18.2	81.3	0.5	-4.24	2.61	0.52	0.31	—	7515	2505	2	0	0	0	0	logfile
✔	7EGC	31112	2023-07-05	2021-03-24	3.9	3.72	—	4.9	0.008	1.13	76.0	0.08	15.43	0.01	1.402	24.31	3.39	7.3	91.9	0.8	-3.59	0.43	0.10	0.10	3.1	0.004	0.81	0.0	0.05	16.66	0.00	1.986	17.27	0.40	6.5	93.4	0.2	-0.77	1.26	0.51	0.32	0.51	113129	13879	63	142	18	0	0	logfile
✔	8D43	27173	2023-07-04	2022-06-01	2.88	3.12	2.94	5.9	0.004	0.84	1.0	0.06	18.27	0.01	1.371	8.43	5.48	6.5	93.5	0.0	-1.48	0.17	-0.02	0.37	3.2	0.004	0.84	0.0	0.05	18.51	0.01	2.058	18.77	3.10	5.2	94.7	0.1	-1.45	2.71	0.41	0.35	0.56	7763	962	5	0	6	1	0	logfile
✔	7URi	26713	2023-07-03	2022-04-22	2.6	2.67	2.95	2.6	0.009	1.37	0.0	0.12	25.77	0.01	2.201	7.31	0.00	0.0	0.0	0.0	—	0.05	0.34	—	2.6	0.008	1.44	0.0	0.07	23.84	0.01	2.072	23.68	0.00	0.0	0.0	0.0	—	2.06	0.08	0.38	—	1905	0	1	90	0	0	0	logfile
✔	6C9Y	7438	2023-07-13	2018-01-29	4.25	4.33	—	9.7	0.008	1.53	5.0	0.08	13.66	0.01	2.064	6.62	5.32	7.8	90.7	1.5	-4.02	0.50	0.12	—	4.1	0.004	0.84	0.0	0.05	13.56	0.01	2.096	20.48	0.06	6.8	93.1	0.1	-1.47	2.40	0.61	0.38	—	28920	3685	7	0	3	0	0	logfile
✔	8DFo	27409	2023-07-11	2022-06-22	3.1	3.40	3.29	7.2	0.022	1.64	93.0	0.16	17.81	0.01	1.724	6.88	0.57	4.8	95.2	0.0	-0.44	0.27	0.07	0.22	3.4	0.003	0.75	0.0	0.04	17.28	0.01	2.086	17.82	0.12	4.2	95.8	0.0	-0.71	1.86	0.44	0.39	0.56	23861	2912	13	45	0	0	0	logfile
✔	7NK1	12428	2023-07-13	2021-02-17	4.22	4.30	—	4.0	0.004	0.69	0.0	0.04	13.56	0.01	1.907	9.03	0.19	4.3	95.7	0.0	-0.71	0.46	0.19	—	4.4	0.004	0.68	0.0	0.04	14.15	0.00	1.835	21.74	0.00	6.8	93.2	0.0	-1.16	1.62	0.62	0.41	—	28747	1791	6	23	0	0	13868	logfile
✔	3JCD	6549	2023-07-22	2015-12-01	3.7	5.07	—	19.0	0.006	0.83	0.0	0.04	14.69	0.00	1.289	14.63	0.02	9.6	85.8	4.5	-2.43	0.34	0.04	0.30	3.4	0.005	1.16	0.0	0.06	20.49	0.01	1.400	48.65	0.88	15.2	83.4	1.3	-4.28	2.51	0.71	0.42	0.16	147815	5982	57	4715	0	0	0	logfile
✔	3KTT	5148	2023-07-03	2009-11-25	4.0	2.33	—	4.5	0.020	2.86	20.0	0.20	15.20	0.01	1.652	179.94	7.82	6.3	89.4	4.3	-0.59	0.27	0.28	—	1.6	0.005	1.21	0.0	0.05	17.07	0.01	2.016	34.63	0.49	11.5	87.3	1.2	-2.51	2.08	0.31	0.43	—	3855	513	1	0	0	0	0	logfile
✔	7APK	11857	2023-07-11	2020-10-17	3.3	3.26	—	3.5	0.004	0.81	0.0	0.05	8.50	0.01	2.256	4.07	0.10	4.7	95.2	0.1	-2.73	0.41	0.22	0.13	2.9	0.007	0.80	0.0	0.04	13.05	0.00	2.079	13.91	0.12	6.6	93.3	0.1	0.97	1.14	0.50	0.44	0.92	72697	9893	30	0	74	0	0	logfile
✔	7Woo	32653	2023-07-08	2022-01-22	3.71	4.08	—	3.9	0.010	1.69	139.0	0.10	15.86	0.01	1.041	23.12	4.33	9.3	88.5	2.2	-3.11	0.47	0.44	0.31	3.9	0.003	0.81	0.0	0.04	16.42	0.00	2.097	15.49	0.35	8.6	91.1	0.3	-0.38	1.64	0.47	0.44	0.13	66949	8644	12	0	0	0	0	logfile
✔	7JGF	22325	2023-07-03	2020-07-19	4.69	4.81	—	4.8	0.002	0.62	0.0	0.04	13.16	0.01	2.109	26.74	0.41	4.6	95.4	0.0	-0.87	0.39	0.43	—	4.8	0.002	0.47	0.0	0.04	13.18	0.00	2.190	46.28	0.41	4.8	95.2	0.0	1.10	0.62	0.41	0.45	—	4477	532	1	0	0	0	30	logfile
✔	8CTG	26989	2023-07-03	2022-05-14	3.8	3.16	3.72	3.3	0.004	0.98	0.0	0.05	7.62	0.01	2.113	12.33	6.90	9.7	88.5	1.8	-3.04	0.57	0.35	-0.17	2.3	0.004	0.91	0.0	0.04	7.56	0.00	2.231	7.59	1.15	15.0	84.8	0.2	-3.09	2.07	0.60	0.45	1.92	5100	1006	4	0	1	0	0	logfile
✔	7FG3	31577	2023-07-05	2021-07-25	3.9	3.62	—	4.0	0.006	1.13	0.0	0.06	14.47	0.01	1.929	37.29	0.00	18.5	80.8	0.7	-4.60	0.22	0.47	-0.27	4.0	0.004	0.92	0.0	0.05	16.64	0.01	2.088	24.71	0.10	15.3	84.1	0.5	-3.68	0.78	0.23	0.45	0.35	9054	1166	2	0	0	0	0	logfile
✔	8FEL	29032	2023-07-05	2022-12-06	4.64	5.02	4.40	4.5	0.001	0.35	0.0	0.04	14.88	0.00	2.191	6.97	1.98	3.8	96.2	0.0	-0.24	0.70	0.37	—	4.2	0.002	0.55	0.0	0.04	12.77	0.00	2.288	10.75	0.00	3.8	96.2	0.0	0.13	1.69	0.74	0.45	—	9201	1191	3	0	0	0	0	logfile

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