Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7CZ5	31824	2023-02-18	2020-09-07	2.6	2.14	—	14.0	0.004	0.69	0.0	0.05	13.25	0.00	2.186	6.27	0.00	3.3	96.7	0.0	-2.04	0.25	0.05	0.50	10.0	0.003	0.65	0.0	0.04	15.11	0.00	2.090	14.88	0.78	5.0	95.0	0.0	-0.37	0.85	0.33	0.18	0.67	8336	1046	11	0	3	3	0	logfile
✔	5VZL	8749	2023-02-21	2017-05-29	3.9	4.38	—	19.0	0.006	0.96	0.0	0.05	14.28	0.01	2.216	7.72	0.25	8.4	91.6	0.0	-4.13	0.31	0.03	-0.03	17.0	0.002	0.66	0.0	0.04	15.70	0.00	1.245	12.48	0.50	5.0	95.0	0.0	-1.31	1.26	0.38	0.19	0.61	13915	1451	3	115	1	0	0	logfile
✔	6PB1	26104	2023-02-18	2019-06-12	2.8	2.98	—	40.0	0.003	0.79	0.0	0.06	8.98	0.01	2.288	4.32	0.00	1.9	98.1	0.0	-2.93	0.05	0.02	0.34	2.9	0.003	0.65	0.0	0.04	14.12	0.00	2.156	12.00	2.15	3.2	96.8	0.0	-0.89	2.36	0.11	0.20	0.34	8785	1069	7	0	9	0	0	logfile
✔	8A1S	15086	2023-02-25	2022-06-02	4.0	3.83	3.95	37.0	0.008	0.74	0.0	0.05	10.01	0.00	1.988	10.18	0.97	3.9	96.0	0.2	-0.24	0.26	0.00	—	3.5	0.004	0.79	0.0	0.05	13.07	0.01	1.990	16.76	0.27	4.6	95.2	0.2	-1.37	1.67	0.33	0.21	—	67152	8528	32	0	32	0	0	logfile
✔	6Qi8	4552	2023-02-21	2019-01-18	3.75	3.92	—	10.4	0.004	0.91	0.0	0.05	16.35	0.01	1.999	4.27	0.19	5.5	94.5	0.0	-5.84	0.17	0.02	0.43	9.9	0.003	0.85	0.0	0.04	17.56	0.00	2.143	15.66	0.19	7.7	92.3	0.0	-2.16	1.53	0.32	0.22	0.51	14789	1907	12	0	6	0	0	logfile
✔	8GWE	34310	2023-02-24	2022-09-16	2.66	3.19	2.77	16.0	0.009	0.97	5.0	0.06	17.61	0.01	1.065	13.66	5.00	8.4	91.2	0.3	-1.93	0.39	0.09	0.45	10.1	0.003	0.74	0.0	0.04	17.58	0.00	1.950	15.87	3.34	8.5	91.3	0.2	-1.91	1.11	0.44	0.22	0.12	22040	2668	15	56	10	1	0	logfile
✔	6FLQ	4275	2023-02-27	2018-01-26	3.6	3.93	3.76	40.0	0.016	1.33	0.0	0.07	14.73	0.01	1.897	5.97	1.40	10.8	89.1	0.1	-4.32	0.16	0.02	0.21	3.8	0.009	1.33	0.0	0.06	17.55	0.01	1.844	30.47	0.70	13.4	86.4	0.2	-2.72	2.16	0.28	0.24	0.30	30201	3868	10	91	3	0	0	logfile
✔	6H5i	0140	2023-02-21	2018-07-24	3.9	3.87	—	23.0	0.006	0.81	0.0	0.05	10.47	0.01	2.196	2.64	0.17	4.3	95.7	0.0	-1.74	0.29	0.06	0.15	3.7	0.003	0.67	0.0	0.04	15.36	0.00	2.097	14.22	0.32	4.1	95.9	0.0	1.46	1.26	0.37	0.24	0.27	43900	5392	26	0	0	0	0	logfile
✔	6CAJ	26098	2023-02-25	2018-01-31	2.8	3.39	—	68.0	0.008	0.88	0.0	0.17	9.84	0.01	1.467	5.88	0.24	4.5	95.5	0.0	-3.63	0.11	0.02	-0.06	3.2	0.007	1.06	1.0	0.06	13.95	0.01	1.962	26.36	3.07	9.5	90.3	0.2	-1.77	1.67	0.17	0.25	0.12	24295	3210	11	0	1	0	0	logfile
✔	6KFK	9974	2023-02-24	2019-07-08	4.1	4.28	—	15.0	0.015	1.99	0.0	0.08	10.94	0.01	1.444	20.13	0.00	8.2	89.5	2.2	-1.03	0.14	0.06	—	4.2	0.004	0.94	0.0	0.05	12.81	0.00	2.059	20.22	0.00	8.3	90.8	0.9	-1.16	2.72	0.24	0.30	—	65076	8844	22	0	0	0	0	logfile
✔	7N9Y	24264	2023-02-18	2021-06-18	4.8	4.30	—	2.2	0.019	1.07	0.0	0.00	6.04	0.00	2.538	0.59	0.00	8.5	91.1	0.3	-1.98	0.49	0.33	—	2.2	0.003	1.01	0.0	0.00	4.45	0.00	2.547	7.13	0.00	19.3	80.3	0.4	-4.00	2.62	0.52	0.31	—	7515	2505	2	0	0	0	0	logfile
✔	8D43	27173	2023-02-18	2022-06-01	2.88	3.12	2.94	5.9	0.004	0.83	1.0	0.06	18.40	0.01	1.371	8.43	5.48	6.5	93.5	0.0	-1.48	0.17	-0.02	0.37	3.2	0.004	0.91	0.0	0.05	18.51	0.01	2.131	21.79	3.34	7.1	92.8	0.1	-1.69	2.70	0.41	0.35	1.05	7763	962	5	0	6	1	0	logfile
✔	7URi	26713	2023-02-16	2022-04-22	2.6	2.67	2.95	2.6	0.009	1.37	0.0	0.12	25.77	0.01	2.201	7.31	0.00	0.0	0.0	0.0	—	0.05	0.34	—	2.6	0.008	1.44	0.0	0.07	23.84	0.01	2.072	23.68	0.00	0.0	0.0	0.0	—	2.06	0.08	0.38	—	1905	0	1	90	0	0	0	logfile
✔	7NK1	12428	2023-02-26	2021-02-17	4.22	4.30	—	4.0	0.004	0.69	0.0	0.04	13.56	0.01	1.907	9.03	0.19	4.3	95.7	0.0	-0.71	0.46	0.19	—	4.4	0.004	0.68	0.0	0.04	14.15	0.00	1.835	21.70	0.00	6.8	93.2	0.0	-1.16	1.62	0.62	0.41	—	28747	1791	6	23	0	0	13868	logfile
✔	6C9Y	7438	2023-02-26	2018-01-29	4.25	4.33	—	9.7	0.008	1.53	5.0	0.08	13.66	0.01	2.064	6.62	5.32	7.8	90.7	1.5	-4.02	0.50	0.12	—	4.1	0.004	0.86	0.0	0.05	13.78	0.01	2.008	22.62	0.00	7.9	92.0	0.1	-1.85	3.63	0.63	0.42	—	28920	3685	7	0	3	0	0	logfile
✔	3KTT	5148	2023-02-17	2009-11-25	4.0	2.33	—	4.5	0.020	2.86	20.0	0.20	15.20	0.01	1.652	179.94	7.82	6.3	89.4	4.3	-0.59	0.27	0.28	—	2.1	0.005	1.24	0.0	0.05	17.17	0.01	2.010	31.44	0.49	9.2	89.6	1.2	-2.49	2.03	0.31	0.42	—	3855	513	1	0	0	0	0	logfile
✔	6HDD	0204	2023-02-26	2018-08-17	4.5	5.28	—	4.4	0.009	1.36	3.0	0.08	12.60	0.01	2.220	12.08	1.07	18.3	81.6	0.1	-6.11	0.74	0.42	—	8.0	0.005	1.06	7.0	0.06	13.43	0.01	1.446	33.80	0.00	17.6	81.8	0.6	-3.77	5.52	0.80	0.43	—	28154	3605	7	0	0	0	0	logfile
✔	7PC2	13316	2023-02-26	2021-08-03	2.8	3.39	—	6.5	0.033	1.53	5.0	0.05	15.16	0.01	1.809	8.92	1.49	7.8	92.2	0.0	-3.81	0.43	0.05	-0.14	2.9	0.006	1.00	0.0	0.06	16.43	0.01	2.020	21.81	3.39	7.4	92.6	0.1	-1.61	1.49	0.61	0.43	0.42	27063	3093	68	0	210	0	0	logfile
✔	7Woo	32653	2023-02-26	2022-01-22	3.71	4.08	—	3.9	0.010	1.69	139.0	0.10	15.86	0.01	1.041	23.12	4.33	9.3	88.5	2.2	-3.11	0.47	0.44	0.31	3.9	0.003	0.80	0.0	0.04	16.47	0.00	2.064	14.96	0.39	8.4	91.3	0.3	-0.43	1.64	0.47	0.44	0.12	66949	8644	12	0	0	0	0	logfile
✔	7LVT	23542	2023-02-23	2021-02-26	4.6	4.32	—	4.0	0.008	1.36	3.0	0.09	13.04	0.01	2.057	6.37	0.96	6.4	93.3	0.3	-2.96	0.68	0.65	—	3.8	0.003	0.72	0.0	0.04	12.98	0.00	2.193	12.43	0.00	5.4	94.4	0.1	0.32	16.94	0.55	0.45	—	18944	2876	4	0	0	0	0	logfile

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