Table showing results for June 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5VZL	8749	2021-06-02	2017-05-29	3.9	4.38	—	19.0	0.006	0.96	0.0	0.05	14.28	0.01	2.216	7.72	0.25	8.4	91.6	0.0	-4.13	0.31	0.03	-0.03	4.3	0.005	0.84	0.0	0.04	16.49	0.01	1.269	19.59	1.00	9.1	90.9	0.0	-2.29	2.41	0.43	0.27	0.28	13915	1451	3	115	1	0	0	logfile
✔	6TQM	10555	2021-06-04	2019-12-16	3.8	4.34	3.78	20.0	0.013	0.92	0.0	0.12	14.97	0.01	2.083	4.06	1.40	14.5	85.5	0.0	-5.95	0.30	0.07	0.30	4.0	0.007	1.08	1.0	0.05	16.37	0.01	1.796	29.27	0.53	14.3	85.6	0.0	-4.07	1.57	0.40	0.28	0.43	39616	2578	6	0	4	0	19804	logfile
✔	6Q97	4476	2021-06-06	2018-12-17	3.9	3.69	—	20.0	0.011	1.21	0.0	0.16	18.90	0.02	1.320	6.98	0.38	10.1	89.8	0.1	-5.34	0.15	0.01	0.22	3.6	0.006	1.09	0.0	0.05	21.12	0.01	1.000	26.09	0.58	11.9	88.1	0.1	-3.43	2.83	0.33	0.28	0.27	156609	6124	72	5051	441	2	0	logfile
✔	6H5i	0140	2021-06-05	2018-07-24	3.9	3.87	—	23.0	0.006	0.84	0.0	0.05	10.47	0.01	2.196	2.63	0.17	4.3	95.7	0.0	-1.74	0.29	0.06	0.15	3.8	0.004	0.79	0.0	0.04	15.71	0.01	2.065	17.05	0.36	5.0	95.0	0.0	0.39	2.20	0.39	0.28	0.21	43900	5392	26	0	0	0	0	logfile
✔	6HDD	0204	2021-06-03	2018-08-17	4.5	5.28	—	4.4	0.009	1.36	3.0	0.08	12.60	0.01	2.220	12.06	1.07	18.3	81.6	0.1	-6.11	0.74	0.42	—	8.4	0.005	1.11	14.0	0.06	13.60	0.01	1.375	27.60	0.00	17.9	82.1	0.0	-3.06	5.49	0.71	0.29	—	28154	3605	7	0	0	0	0	logfile
✔	5GAK	3227	2021-06-05	2015-12-09	3.88	4.13	—	19.0	0.006	0.94	0.0	0.07	20.85	0.01	0.816	23.80	0.26	9.2	90.2	0.7	-3.81	0.21	0.02	0.28	4.0	0.004	0.94	0.0	0.05	20.72	0.01	1.968	28.60	0.40	11.3	88.3	0.4	-3.21	2.47	0.36	0.30	0.01	128975	6434	50	3597	234	0	0	logfile
✔	6LTJ	0974	2021-06-04	2020-01-22	3.7	4.16	—	15.0	0.010	1.08	12.0	0.07	22.08	0.01	2.173	13.82	2.63	6.4	93.3	0.3	-3.67	0.46	0.09	0.04	3.6	0.007	0.93	0.0	0.04	22.31	0.01	1.525	21.73	0.13	4.0	96.0	0.0	-0.04	1.73	0.60	0.30	0.52	34283	3656	21	238	1	0	0	logfile
✔	6KFK	9974	2021-06-06	2019-07-08	4.1	4.28	—	15.0	0.015	2.00	0.0	0.08	10.94	0.01	1.444	19.39	0.00	8.2	89.5	2.2	-1.03	0.14	0.06	—	4.2	0.004	0.87	0.0	0.05	13.11	0.00	2.083	19.62	0.01	9.4	89.6	1.0	-1.60	2.00	0.24	0.31	—	65076	8844	22	0	0	0	0	logfile
✔	7EGC	31112	2021-06-04	2021-03-24	3.9	3.72	—	4.9	0.008	1.13	76.0	0.08	15.44	0.01	1.402	23.95	3.39	7.3	91.9	0.8	-3.59	0.43	0.10	0.10	3.1	0.004	0.79	0.0	0.04	16.48	0.01	2.089	13.53	0.20	5.4	94.4	0.2	-0.41	1.35	0.52	0.32	0.40	113129	13879	63	142	18	0	0	logfile
✔	6KN8	0729	2021-06-05	2019-08-03	4.8	8.89	—	8.4	0.019	1.81	10.0	0.10	12.39	0.01	2.211	8.87	0.41	2.0	97.4	0.5	-0.24	0.74	0.43	—	8.4	0.072	4.50	942.0	0.24	14.47	0.02	1.095	221.79	0.44	10.2	82.6	7.1	-2.46	11.09	0.69	0.36	—	60966	7669	44	0	15	0	0	logfile
✔	3JAU	6366	2021-06-05	2015-06-24	4.8	4.76	—	5.7	0.027	2.65	660.0	0.16	14.74	0.02	1.686	11.04	1.90	4.6	94.1	1.3	-2.16	0.21	0.38	—	5.4	0.002	0.68	0.0	0.04	14.19	0.00	2.172	15.65	0.00	3.3	96.2	0.4	-0.13	1.45	0.21	0.38	—	114900	14700	180	0	0	0	0	logfile
✔	3KTT	5148	2021-06-01	2009-11-25	4.0	2.33	—	4.5	0.020	2.86	20.0	0.20	15.20	0.01	1.652	176.10	7.82	6.3	89.4	4.3	-0.59	0.27	0.28	—	2.1	0.004	1.10	0.0	0.05	17.02	0.01	2.030	23.77	0.00	9.4	89.4	1.2	-2.11	1.88	0.30	0.40	—	3855	513	1	0	0	0	0	logfile
✔	6CFZ	7469	2021-06-01	2018-02-19	4.5	4.66	5.81	4.7	0.010	1.19	0.0	0.05	9.79	0.01	0.321	10.91	0.00	6.6	92.9	0.4	-0.45	0.25	0.19	—	4.5	0.007	0.81	0.0	0.04	11.85	0.01	1.616	25.76	0.00	10.5	89.4	0.2	2.76	1.89	0.33	0.41	—	204102	12937	170	0	0	0	102272	logfile
✔	7BHQ	12190	2021-06-02	2021-01-11	3.2	1.77	3.76	2.6	0.003	0.50	0.0	0.04	14.12	0.00	2.168	13.33	0.00	3.0	97.0	0.0	1.03	0.20	0.47	0.97	2.2	0.004	0.69	0.0	0.04	16.55	0.01	2.097	17.30	0.49	4.0	96.0	0.0	0.46	0.92	0.20	0.45	1.01	7402	1010	5	0	0	0	0	logfile
✔	7APK	11857	2021-06-02	2020-10-17	3.3	3.26	—	3.5	0.004	0.81	0.0	0.05	8.50	0.01	2.256	3.99	0.10	4.7	95.2	0.1	-2.73	0.41	0.22	0.13	3.0	0.008	0.86	0.0	0.05	13.17	0.01	1.998	16.01	0.19	7.2	92.7	0.1	0.46	1.69	0.50	0.45	1.00	72697	9893	30	0	74	0	0	logfile
✔	6P7N	20267	2021-06-04	2019-06-06	4.9	9.02	6.14	4.9	0.002	0.53	0.0	0.04	14.46	0.00	2.152	6.63	1.33	5.6	94.4	0.0	-3.30	0.81	0.58	—	4.8	0.002	0.57	0.0	0.04	13.55	0.00	2.044	10.45	0.00	3.2	96.8	0.0	0.60	2.93	0.76	0.46	—	20356	2352	10	52	4	0	0	logfile
✔	7JGF	22325	2021-06-01	2020-07-19	4.69	4.81	—	4.8	0.002	0.62	0.0	0.04	13.16	0.01	2.109	26.40	0.41	4.6	95.4	0.0	-0.87	0.39	0.43	—	4.7	0.002	0.50	0.0	0.04	13.46	0.00	2.074	52.91	0.41	6.3	93.7	0.0	0.95	0.80	0.42	0.46	—	4477	532	1	0	0	0	30	logfile
✔	7JMF	22392	2021-06-05	2020-07-31	4.5	5.06	—	4.7	0.005	0.99	0.0	0.05	10.23	0.01	1.373	8.03	0.36	11.2	88.6	0.2	-4.91	0.54	0.27	—	7.9	0.003	0.70	0.0	0.04	11.41	0.00	2.056	12.98	0.01	8.7	91.3	0.0	-1.70	1.59	0.71	0.46	—	120756	13500	12	0	3608	0	0	logfile
✔	7ENA	31204	2021-06-07	2021-04-16	4.07	3.90	—	3.5	0.011	1.59	361.0	0.11	17.28	0.01	1.497	21.87	10.72	7.9	90.7	1.4	-2.34	0.57	0.29	—	3.3	0.005	0.77	0.0	0.04	14.31	0.00	1.941	16.32	0.01	8.2	91.6	0.3	-0.49	1.63	0.64	0.47	—	173965	21595	88	138	18	0	0	logfile
✔	1oED	1044	2021-06-01	2003-03-24	4.0	3.94	—	10.4	0.014	2.29	3.0	0.10	17.23	0.01	1.183	221.91	19.76	5.2	92.7	2.1	-3.67	0.39	0.18	—	9.0	0.004	1.09	0.0	0.05	15.87	0.01	2.103	26.01	0.52	2.4	97.6	0.0	1.65	3.92	0.64	0.47	—	4926	636	5	0	0	0	0	logfile

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