Table showing results for September 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5LZS	4130	2021-09-13	2016-10-02	3.31	3.42	3.34	3.3	0.007	1.16	9.0	0.10	18.08	0.01	1.121	2.64	6.66	6.0	93.6	0.5	-2.99	0.80	0.87	2.60	3.3	0.003	0.61	0.0	0.03	17.10	0.01	1.934	11.59	0.55	3.6	96.4	0.0	-0.33	0.75	0.80	0.86	2.07	220934	12153	105	5748	285	0	0	logfile
✔	5iQR	8107	2021-09-12	2016-03-11	3.0	3.10	3.03	3.1	0.008	1.25	41.0	0.10	17.19	0.02	0.899	7.46	6.07	7.5	91.0	1.5	-2.52	0.76	0.81	1.93	3.0	0.005	0.72	0.0	0.03	16.61	0.01	1.099	14.85	4.46	5.6	94.1	0.2	-0.74	2.22	0.82	0.86	1.89	154519	6570	74	4794	303	2	0	logfile
✔	5MDY	3492	2021-09-10	2016-11-13	3.35	3.40	3.43	3.4	0.009	1.39	22.0	0.11	17.09	0.02	1.409	4.34	9.85	6.0	93.5	0.5	-2.09	0.78	0.85	2.23	3.4	0.003	0.66	0.0	0.03	15.64	0.01	1.222	10.33	0.33	3.8	96.1	0.1	0.03	0.65	0.77	0.83	1.90	149460	6323	68	4638	452	3	0	logfile
✔	5U9F	8521	2021-09-11	2016-12-16	3.2	4.48	—	3.3	0.006	0.95	0.0	0.08	13.57	0.01	2.301	12.47	1.02	10.8	88.2	1.0	-5.04	0.87	0.78	1.55	3.4	0.004	0.67	0.0	0.03	15.83	0.00	1.942	20.89	0.62	9.7	90.2	0.1	-1.87	1.49	0.94	0.90	1.06	152819	6576	72	4729	361	0	0	logfile
✔	6JYL	9718	2021-09-03	2019-04-26	3.37	4.00	—	3.4	0.008	0.83	0.0	0.05	24.45	0.01	2.086	2.68	0.28	4.8	95.0	0.2	-3.67	0.90	0.87	2.92	3.5	0.003	0.59	0.0	0.03	24.64	0.00	1.661	7.71	0.09	4.2	95.8	0.0	0.91	0.58	0.90	0.88	1.85	16136	1265	11	292	3	0	0	logfile
✔	6SE0	10151	2021-09-03	2019-07-29	3.8	4.73	—	4.6	0.009	1.01	0.0	0.06	28.28	0.01	2.248	4.43	0.00	0.9	99.1	0.0	-2.82	0.80	0.78	0.85	4.6	0.004	0.68	0.0	0.03	28.83	0.00	2.115	14.59	0.80	2.3	97.7	0.0	0.65	0.75	0.80	0.78	0.43	12002	765	10	290	0	0	0	logfile
✔	6E9Y	9020	2021-09-02	2018-08-01	4.3	4.50	—	4.3	0.008	0.73	0.0	0.04	7.51	0.00	1.433	24.85	0.00	3.1	96.9	0.0	-3.58	0.75	0.80	—	4.3	0.003	0.50	0.0	0.03	11.11	0.00	2.030	8.93	0.00	1.3	98.7	0.0	2.74	1.55	0.76	0.82	—	54450	3405	15	0	0	0	28155	logfile
✔	6SXo	10344	2021-09-03	2019-09-26	3.3	3.36	—	3.3	0.009	1.35	0.0	0.07	16.45	0.01	2.142	5.99	1.16	4.7	95.3	0.0	-4.39	0.26	0.72	2.92	3.3	0.002	0.57	0.0	0.03	16.61	0.00	2.131	10.38	0.35	3.3	96.7	0.0	-1.04	0.77	0.27	0.76	2.02	14894	973	8	326	0	0	0	logfile
✔	6o0X	0583	2021-09-03	2019-02-17	3.28	3.97	—	3.6	0.005	0.74	0.0	0.04	16.67	0.01	2.317	2.65	0.14	6.2	93.8	0.0	-4.06	0.85	0.88	2.75	3.6	0.002	0.48	0.0	0.03	17.09	0.00	2.236	5.41	0.14	3.5	96.5	0.0	0.19	1.24	0.84	0.87	2.51	11257	1112	5	150	0	0	0	logfile
✔	5A6E	3062	2021-09-03	2015-06-25	4.5	6.76	—	5.1	0.010	3.73	0.0	0.05	15.55	0.01	2.112	7.88	3.19	11.1	88.8	0.2	-5.00	0.36	0.56	—	4.8	0.004	0.64	0.0	0.03	10.48	0.00	1.913	15.76	0.00	5.3	94.7	0.0	-0.60	2.60	0.41	0.73	—	11093	634	4	0	182	0	5102	logfile
✔	6PVK	20491	2021-09-03	2019-07-20	3.4	3.47	—	3.4	0.010	1.03	5.0	0.05	19.36	0.01	1.370	14.05	6.50	10.3	88.7	1.0	-4.94	0.69	0.69	1.32	3.4	0.002	0.55	0.0	0.03	17.62	0.00	2.040	9.42	0.34	6.2	93.7	0.1	-2.06	0.77	0.78	0.79	1.45	60554	1791	18	2169	0	2	0	logfile
✔	6G4W	4349	2021-09-06	2018-03-28	4.5	5.22	—	4.4	0.006	1.11	2.0	0.07	21.52	0.01	0.760	5.01	0.00	8.2	91.5	0.3	-3.51	0.65	0.51	—	4.3	0.003	0.62	0.0	0.03	23.68	0.00	2.004	8.74	0.00	9.9	90.0	0.0	-0.26	2.83	0.88	0.72	—	45223	4589	31	1563	768	0	0	logfile
✔	6QiK	4560	2021-09-05	2019-01-20	3.1	3.35	—	3.3	0.014	0.99	2.0	0.06	15.84	0.01	1.872	3.51	0.80	8.3	91.5	0.2	-4.17	0.84	0.86	3.77	3.3	0.003	0.53	0.0	0.03	15.94	0.00	2.087	7.94	0.50	5.5	94.5	0.0	-1.18	0.44	0.86	0.88	3.18	128569	6843	53	3423	217	0	0	logfile
✔	6DZP	8937	2021-09-06	2018-07-05	3.42	3.50	—	3.4	0.012	1.08	1.0	0.06	15.97	0.01	1.028	6.66	0.60	9.8	89.2	1.0	-4.67	0.79	0.82	3.24	3.4	0.006	0.69	1.0	0.03	15.88	0.01	1.688	9.82	0.30	4.8	95.1	0.1	-1.18	3.28	0.81	0.84	2.12	98097	3715	34	3237	0	0	0	logfile
✔	6MEC	9106	2021-09-04	2018-09-06	3.6	3.69	—	3.6	0.010	1.21	0.0	0.06	18.24	0.01	1.659	15.30	0.00	13.7	86.3	0.0	-4.93	0.86	0.80	2.53	3.6	0.007	0.89	1.0	0.03	17.97	0.00	1.979	16.73	0.00	9.6	90.4	0.0	-1.70	0.92	0.86	0.79	1.73	21276	414	5	832	52	0	0	logfile
✔	6QT0	4630	2021-09-04	2019-02-22	3.4	3.49	—	3.4	0.010	0.94	3.0	0.05	16.30	0.01	1.931	4.32	1.29	7.1	92.8	0.1	-4.69	0.85	0.87	3.24	3.4	0.004	0.60	0.0	0.03	16.19	0.00	2.012	9.55	0.51	6.0	94.0	0.0	-1.64	1.14	0.86	0.88	2.67	124065	6362	50	3441	5	0	0	logfile
✔	6G4S	4348	2021-09-06	2018-03-28	4.0	4.37	—	3.9	0.005	1.05	0.0	0.07	21.38	0.01	1.911	1.77	0.00	8.6	91.2	0.2	-3.72	0.72	0.69	—	3.9	0.003	0.55	0.0	0.03	20.92	0.00	2.097	4.17	0.00	8.3	91.7	0.0	-0.24	2.28	0.82	0.73	—	48967	5224	33	1613	768	0	0	logfile
✔	5MDV	3489	2021-09-10	2016-11-13	2.97	3.05	2.97	3.0	0.008	1.26	22.0	0.10	16.60	0.02	1.257	3.20	7.74	4.9	94.7	0.4	-1.77	0.79	0.88	3.19	3.0	0.003	0.63	0.0	0.03	15.73	0.01	1.913	8.77	3.55	3.1	96.8	0.0	0.35	0.50	0.78	0.87	2.89	149892	6382	67	4638	442	2	0	logfile
✔	6ME0	9105	2021-09-04	2018-09-05	3.6	3.74	—	3.6	0.010	1.16	0.0	0.05	17.63	0.01	1.531	13.72	0.00	11.8	88.2	0.0	-5.11	0.89	0.81	2.89	3.6	0.004	0.62	0.0	0.03	17.28	0.00	1.922	17.82	0.28	10.8	89.2	0.0	-2.28	1.22	0.89	0.81	1.78	21539	414	4	845	33	0	0	logfile
✔	5Z3U	6882	2021-09-03	2018-01-08	4.31	4.01	—	3.9	0.011	0.97	0.0	0.05	24.03	0.01	2.030	18.69	0.09	9.0	91.0	0.0	-5.01	0.77	0.81	—	3.9	0.003	0.61	0.0	0.03	24.51	0.00	2.135	11.11	0.00	5.2	94.8	0.0	0.83	0.87	0.75	0.77	—	16766	1341	12	292	3	0	0	logfile

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