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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6YW7 | 10960 | 2022-12-11 | 2020-04-29 | 4.5 | 5.21 | — | 4.7 | 0.021 | 3.50 | 0.0 | 0.09 | 6.70 | 0.01 | 2.034 | 2.17 | 0.00 | 4.5 | 94.7 | 0.9 | -1.45 | 0.57 | 0.32 | — | 4.6 | 0.003 | 1.00 | 0.0 | 0.02 | 5.16 | 0.00 | 2.215 | 9.65 | 0.00 | 10.5 | 89.4 | 0.2 | -3.99 | 6.44 | 0.82 | 0.75 | — | 5426 | 1788 | 9 | 0 | 2 | 0 | 0 | logfile |
✔ | 6WCB | 21605 | 2022-12-12 | 2020-03-30 | 3.17 | 3.17 | — | 3.2 | 0.005 | 0.41 | 0.0 | 0.03 | 13.87 | 0.00 | 2.128 | 2.50 | 1.29 | 0.8 | 99.2 | 0.0 | 0.58 | 0.55 | 0.77 | 2.89 | 3.2 | 0.002 | 0.48 | 0.0 | 0.03 | 15.53 | 0.00 | 2.084 | 3.96 | 0.16 | 1.5 | 98.5 | 0.0 | 3.59 | 1.29 | 0.54 | 0.79 | 2.38 | 11647 | 734 | 6 | 0 | 7 | 40 | 5904 | logfile |
✔ | 6VPS | 21316 | 2022-12-11 | 2020-02-04 | 2.6 | 2.62 | 2.52 | 2.7 | 0.011 | 1.14 | 10.0 | 0.13 | 20.44 | 0.01 | 2.501 | 19.04 | 0.00 | 6.9 | 93.1 | 0.0 | -3.61 | 0.49 | 0.90 | 6.11 | 2.7 | 0.004 | 0.53 | 0.0 | 0.03 | 20.06 | 0.00 | 2.403 | 4.27 | 0.98 | 6.9 | 93.1 | 0.0 | -3.78 | 1.19 | 0.48 | 0.87 | 6.47 | 2736 | 279 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WCC | 21606 | 2022-12-12 | 2020-03-30 | 3.24 | 3.27 | — | 3.3 | 0.003 | 0.51 | 0.0 | 0.03 | 15.73 | 0.00 | 2.025 | 4.39 | 2.26 | 0.8 | 99.2 | 0.0 | 1.46 | 0.53 | 0.76 | 1.58 | 3.3 | 0.003 | 0.52 | 0.0 | 0.03 | 15.73 | 0.00 | 2.212 | 7.06 | 0.32 | 2.6 | 97.4 | 0.0 | 4.20 | 0.73 | 0.51 | 0.78 | 1.78 | 11629 | 734 | 6 | 0 | 5 | 12 | 5908 | logfile |
✔ | 6S61 | 10101 | 2022-12-14 | 2019-07-02 | 1.84 | 1.89 | 1.85 | 1.9 | 0.011 | 1.36 | 0.0 | 0.06 | 12.21 | 0.01 | 0.312 | 2.62 | 1.29 | 1.8 | 98.2 | 0.0 | 3.69 | 0.77 | 0.86 | 8.46 | 1.9 | 0.003 | 0.57 | 0.0 | 0.03 | 14.82 | 0.00 | 1.798 | 5.19 | 0.65 | 1.8 | 98.2 | 0.0 | 4.54 | 0.74 | 0.80 | 0.90 | 8.65 | 71060 | 4128 | 72 | 0 | 30 | 3854 | 32904 | logfile |
✔ | 6SE6 | 10152 | 2022-12-12 | 2019-07-29 | 3.5 | 4.16 | — | 3.9 | 0.010 | 1.00 | 0.0 | 0.06 | 28.15 | 0.01 | 2.247 | 3.86 | 0.00 | 1.2 | 98.8 | 0.0 | -3.83 | 0.88 | 0.85 | 1.92 | 3.9 | 0.004 | 0.65 | 0.0 | 0.03 | 28.59 | 0.00 | 2.084 | 12.72 | 0.94 | 1.9 | 98.1 | 0.0 | 1.39 | 0.58 | 0.86 | 0.83 | 1.16 | 12068 | 771 | 11 | 290 | 0 | 0 | 0 | logfile |
✔ | 6o00 | 0564 | 2022-12-16 | 2019-02-14 | 4.18 | 4.51 | — | 4.3 | 0.005 | 0.72 | 0.0 | 0.04 | 14.22 | 0.00 | 2.087 | 4.70 | 0.69 | 4.6 | 95.4 | 0.0 | -3.33 | 0.67 | 0.77 | — | 4.2 | 0.003 | 0.57 | 0.0 | 0.03 | 13.19 | 0.00 | 1.973 | 9.76 | 0.00 | 4.4 | 95.6 | 0.0 | 1.16 | 1.87 | 0.68 | 0.78 | — | 31470 | 1878 | 6 | 0 | 0 | 0 | 15714 | logfile |
✔ | 5M6S | 3451 | 2022-12-11 | 2016-10-25 | 4.8 | 5.27 | — | 6.5 | 0.005 | 0.84 | 0.0 | 0.04 | 27.97 | 0.00 | 2.447 | 24.50 | 44.05 | 7.3 | 89.6 | 3.1 | -5.37 | 0.01 | 0.04 | — | 5.3 | 0.003 | 0.59 | 0.0 | 0.03 | 18.68 | 0.00 | 2.007 | 8.17 | 0.00 | 5.2 | 94.8 | 0.0 | 2.82 | 2.46 | 0.03 | 0.06 | — | 1593 | 98 | 1 | 0 | 0 | 0 | 793 | logfile |
✔ | 6MEC | 9106 | 2022-12-14 | 2018-09-06 | 3.6 | 3.69 | — | 3.6 | 0.010 | 1.21 | 0.0 | 0.06 | 18.24 | 0.01 | 1.659 | 15.45 | 0.00 | 13.7 | 86.3 | 0.0 | -4.93 | 0.86 | 0.80 | 2.53 | 3.6 | 0.004 | 0.65 | 0.0 | 0.03 | 18.06 | 0.00 | 1.839 | 16.96 | 0.28 | 9.1 | 90.9 | 0.0 | -1.86 | 0.92 | 0.86 | 0.80 | 1.95 | 21276 | 414 | 5 | 832 | 52 | 0 | 0 | logfile |
✔ | 6VQi | 21351 | 2022-12-11 | 2020-02-05 | 4.3 | 4.89 | — | 4.2 | 0.005 | 1.14 | 0.0 | 0.05 | 3.90 | 0.01 | 2.327 | 1.95 | 0.00 | 1.3 | 98.2 | 0.5 | 2.16 | 0.56 | 0.73 | — | 4.1 | 0.002 | 0.54 | 0.0 | 0.03 | 3.92 | 0.00 | 2.243 | 3.65 | 0.00 | 5.4 | 94.5 | 0.1 | 3.11 | 0.74 | 0.57 | 0.74 | — | 5278 | 1062 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RiU | 4898 | 2022-12-11 | 2019-04-25 | 3.9 | 6.21 | 2.04 | 7.0 | 0.008 | 1.19 | 0.0 | 0.09 | 15.19 | 0.01 | 2.182 | 5.20 | 0.00 | 8.4 | 91.6 | 0.0 | -5.77 | 0.59 | 0.69 | 0.56 | 7.1 | 0.003 | 0.67 | 0.0 | 0.03 | 16.53 | 0.00 | 2.057 | 13.17 | 0.00 | 5.1 | 94.9 | 0.0 | -0.39 | 1.43 | 0.61 | 0.75 | 1.30 | 2882 | 182 | 2 | 0 | 0 | 0 | 1430 | logfile |
✔ | 5GAH | 8004 | 2022-12-17 | 2015-11-26 | 3.8 | 3.97 | — | 3.9 | 0.008 | 1.10 | 0.0 | 0.05 | 15.97 | 0.01 | 1.737 | 8.39 | 11.31 | 3.3 | 96.7 | 0.1 | -3.33 | 0.73 | 0.85 | 1.12 | 3.9 | 0.004 | 0.61 | 0.0 | 0.03 | 15.18 | 0.00 | 1.128 | 13.43 | 0.65 | 3.7 | 96.2 | 0.1 | -0.58 | 1.17 | 0.73 | 0.87 | 1.36 | 94027 | 3595 | 46 | 3049 | 473 | 0 | 0 | logfile |
✔ | 6ME0 | 9105 | 2022-12-14 | 2018-09-05 | 3.6 | 3.74 | — | 3.6 | 0.010 | 1.16 | 0.0 | 0.05 | 17.63 | 0.01 | 1.531 | 13.75 | 0.00 | 11.8 | 88.2 | 0.0 | -5.11 | 0.89 | 0.81 | 2.89 | 3.6 | 0.005 | 0.67 | 0.0 | 0.03 | 17.39 | 0.00 | 1.842 | 19.43 | 0.28 | 13.2 | 86.8 | 0.0 | -2.26 | 1.22 | 0.89 | 0.82 | 2.07 | 21539 | 414 | 4 | 845 | 33 | 0 | 0 | logfile |
✔ | 6T72 | 10389 | 2022-12-15 | 2019-10-21 | 3.7 | 3.79 | — | 3.8 | 0.013 | 1.64 | 0.0 | 0.11 | 14.69 | 0.02 | 2.167 | 4.27 | 0.00 | 2.1 | 97.9 | 0.0 | -2.53 | 0.76 | 0.87 | 2.40 | 3.7 | 0.002 | 0.53 | 0.0 | 0.03 | 14.78 | 0.00 | 2.127 | 3.35 | 0.30 | 2.0 | 98.0 | 0.0 | 1.81 | 1.24 | 0.77 | 0.87 | 1.64 | 26278 | 3388 | 42 | 0 | 210 | 0 | 0 | logfile |
✔ | 5GAG | 8003 | 2022-12-17 | 2015-11-26 | 3.8 | 3.95 | — | 3.8 | 0.007 | 1.04 | 1.0 | 0.05 | 15.71 | 0.00 | 1.789 | 8.25 | 9.03 | 3.0 | 96.9 | 0.1 | -3.35 | 0.79 | 0.90 | 1.98 | 3.8 | 0.004 | 0.61 | 0.0 | 0.03 | 15.10 | 0.00 | 1.013 | 14.50 | 0.79 | 3.5 | 96.4 | 0.1 | -0.35 | 0.69 | 0.78 | 0.87 | 1.98 | 94030 | 3598 | 46 | 3049 | 473 | 0 | 0 | logfile |
✔ | 6T79 | 10390 | 2022-12-12 | 2019-10-21 | 3.2 | 3.08 | 3.18 | 3.1 | 0.006 | 0.85 | 0.0 | 0.05 | 28.26 | 0.01 | 2.178 | 5.33 | 0.00 | 2.0 | 98.0 | 0.0 | -3.23 | 0.73 | 0.78 | 2.49 | 3.0 | 0.004 | 0.62 | 0.0 | 0.03 | 29.14 | 0.00 | 2.187 | 10.07 | 0.78 | 2.0 | 98.0 | 0.0 | 0.98 | 1.17 | 0.75 | 0.81 | 2.51 | 12121 | 776 | 10 | 290 | 0 | 0 | 0 | logfile |
✔ | 6MRU | 9213 | 2022-12-12 | 2018-10-15 | 3.2 | 3.31 | — | 3.3 | 0.005 | 0.73 | 0.0 | 0.04 | 10.16 | 0.01 | 2.297 | 2.27 | 0.82 | 1.4 | 98.6 | 0.0 | -1.59 | 0.72 | 0.83 | 3.34 | 3.3 | 0.002 | 0.46 | 0.0 | 0.03 | 13.26 | 0.00 | 2.192 | 3.53 | 0.00 | 0.6 | 99.4 | 0.0 | 5.66 | 3.08 | 0.75 | 0.86 | 1.81 | 29107 | 3705 | 13 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oT5 | 20194 | 2022-12-18 | 2019-05-02 | 3.6 | 3.71 | 3.54 | 3.7 | 0.009 | 0.86 | 0.0 | 0.05 | 10.12 | 0.00 | 1.623 | 6.48 | 0.00 | 3.0 | 97.0 | 0.0 | -2.73 | 0.65 | 0.76 | 3.18 | 3.7 | 0.003 | 0.55 | 0.0 | 0.03 | 13.40 | 0.00 | 1.949 | 6.19 | 0.00 | 5.6 | 94.4 | 0.0 | 0.49 | 0.83 | 0.68 | 0.79 | 2.80 | 33420 | 2444 | 8 | 0 | 52 | 0 | 15620 | logfile |
✔ | 6MRT | 9212 | 2022-12-11 | 2018-10-15 | 2.8 | 2.93 | — | 2.9 | 0.008 | 0.90 | 0.0 | 0.05 | 10.67 | 0.01 | 2.260 | 1.61 | 0.82 | 1.1 | 98.9 | 0.0 | -1.27 | 0.70 | 0.84 | 3.77 | 2.9 | 0.003 | 0.46 | 0.0 | 0.03 | 15.43 | 0.00 | 2.226 | 3.14 | 1.29 | 0.5 | 99.5 | 0.0 | 5.71 | 3.08 | 0.73 | 0.86 | 2.07 | 26868 | 3420 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6MHo | 9115 | 2022-12-16 | 2018-09-18 | 3.4 | 3.50 | 3.44 | 3.5 | 0.005 | 0.72 | 0.0 | 0.04 | 7.36 | 0.00 | 2.108 | 2.96 | 0.00 | 2.7 | 97.3 | 0.0 | -2.41 | 0.66 | 0.76 | 3.45 | 3.5 | 0.003 | 0.54 | 0.0 | 0.03 | 12.72 | 0.00 | 1.989 | 6.10 | 0.21 | 4.2 | 95.8 | 0.0 | 1.20 | 2.46 | 0.68 | 0.81 | 3.70 | 32224 | 2404 | 4 | 0 | 0 | 0 | 15184 | logfile |