Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6YW7	10960	2022-12-11	2020-04-29	4.5	5.21	—	4.7	0.021	3.50	0.0	0.09	6.70	0.01	2.034	2.17	0.00	4.5	94.7	0.9	-1.45	0.57	0.32	—	4.6	0.003	1.00	0.0	0.02	5.16	0.00	2.215	9.65	0.00	10.5	89.4	0.2	-3.99	6.44	0.82	0.75	—	5426	1788	9	0	2	0	0	logfile
✔	6WCB	21605	2022-12-12	2020-03-30	3.17	3.17	—	3.2	0.005	0.41	0.0	0.03	13.87	0.00	2.128	2.50	1.29	0.8	99.2	0.0	0.58	0.55	0.77	2.89	3.2	0.002	0.48	0.0	0.03	15.53	0.00	2.084	3.96	0.16	1.5	98.5	0.0	3.59	1.29	0.54	0.79	2.38	11647	734	6	0	7	40	5904	logfile
✔	6VPS	21316	2022-12-11	2020-02-04	2.6	2.62	2.52	2.7	0.011	1.14	10.0	0.13	20.44	0.01	2.501	19.04	0.00	6.9	93.1	0.0	-3.61	0.49	0.90	6.11	2.7	0.004	0.53	0.0	0.03	20.06	0.00	2.403	4.27	0.98	6.9	93.1	0.0	-3.78	1.19	0.48	0.87	6.47	2736	279	9	0	0	0	0	logfile
✔	6WCC	21606	2022-12-12	2020-03-30	3.24	3.27	—	3.3	0.003	0.51	0.0	0.03	15.73	0.00	2.025	4.39	2.26	0.8	99.2	0.0	1.46	0.53	0.76	1.58	3.3	0.003	0.52	0.0	0.03	15.73	0.00	2.212	7.06	0.32	2.6	97.4	0.0	4.20	0.73	0.51	0.78	1.78	11629	734	6	0	5	12	5908	logfile
✔	6S61	10101	2022-12-14	2019-07-02	1.84	1.89	1.85	1.9	0.011	1.36	0.0	0.06	12.21	0.01	0.312	2.62	1.29	1.8	98.2	0.0	3.69	0.77	0.86	8.46	1.9	0.003	0.57	0.0	0.03	14.82	0.00	1.798	5.19	0.65	1.8	98.2	0.0	4.54	0.74	0.80	0.90	8.65	71060	4128	72	0	30	3854	32904	logfile
✔	6SE6	10152	2022-12-12	2019-07-29	3.5	4.16	—	3.9	0.010	1.00	0.0	0.06	28.15	0.01	2.247	3.86	0.00	1.2	98.8	0.0	-3.83	0.88	0.85	1.92	3.9	0.004	0.65	0.0	0.03	28.59	0.00	2.084	12.72	0.94	1.9	98.1	0.0	1.39	0.58	0.86	0.83	1.16	12068	771	11	290	0	0	0	logfile
✔	6o00	0564	2022-12-16	2019-02-14	4.18	4.51	—	4.3	0.005	0.72	0.0	0.04	14.22	0.00	2.087	4.70	0.69	4.6	95.4	0.0	-3.33	0.67	0.77	—	4.2	0.003	0.57	0.0	0.03	13.19	0.00	1.973	9.76	0.00	4.4	95.6	0.0	1.16	1.87	0.68	0.78	—	31470	1878	6	0	0	0	15714	logfile
✔	5M6S	3451	2022-12-11	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	24.50	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.3	0.003	0.59	0.0	0.03	18.68	0.00	2.007	8.17	0.00	5.2	94.8	0.0	2.82	2.46	0.03	0.06	—	1593	98	1	0	0	0	793	logfile
✔	6MEC	9106	2022-12-14	2018-09-06	3.6	3.69	—	3.6	0.010	1.21	0.0	0.06	18.24	0.01	1.659	15.45	0.00	13.7	86.3	0.0	-4.93	0.86	0.80	2.53	3.6	0.004	0.65	0.0	0.03	18.06	0.00	1.839	16.96	0.28	9.1	90.9	0.0	-1.86	0.92	0.86	0.80	1.95	21276	414	5	832	52	0	0	logfile
✔	6VQi	21351	2022-12-11	2020-02-05	4.3	4.89	—	4.2	0.005	1.14	0.0	0.05	3.90	0.01	2.327	1.95	0.00	1.3	98.2	0.5	2.16	0.56	0.73	—	4.1	0.002	0.54	0.0	0.03	3.92	0.00	2.243	3.65	0.00	5.4	94.5	0.1	3.11	0.74	0.57	0.74	—	5278	1062	8	0	0	0	0	logfile
✔	6RiU	4898	2022-12-11	2019-04-25	3.9	6.21	2.04	7.0	0.008	1.19	0.0	0.09	15.19	0.01	2.182	5.20	0.00	8.4	91.6	0.0	-5.77	0.59	0.69	0.56	7.1	0.003	0.67	0.0	0.03	16.53	0.00	2.057	13.17	0.00	5.1	94.9	0.0	-0.39	1.43	0.61	0.75	1.30	2882	182	2	0	0	0	1430	logfile
✔	5GAH	8004	2022-12-17	2015-11-26	3.8	3.97	—	3.9	0.008	1.10	0.0	0.05	15.97	0.01	1.737	8.39	11.31	3.3	96.7	0.1	-3.33	0.73	0.85	1.12	3.9	0.004	0.61	0.0	0.03	15.18	0.00	1.128	13.43	0.65	3.7	96.2	0.1	-0.58	1.17	0.73	0.87	1.36	94027	3595	46	3049	473	0	0	logfile
✔	6ME0	9105	2022-12-14	2018-09-05	3.6	3.74	—	3.6	0.010	1.16	0.0	0.05	17.63	0.01	1.531	13.75	0.00	11.8	88.2	0.0	-5.11	0.89	0.81	2.89	3.6	0.005	0.67	0.0	0.03	17.39	0.00	1.842	19.43	0.28	13.2	86.8	0.0	-2.26	1.22	0.89	0.82	2.07	21539	414	4	845	33	0	0	logfile
✔	6T72	10389	2022-12-15	2019-10-21	3.7	3.79	—	3.8	0.013	1.64	0.0	0.11	14.69	0.02	2.167	4.27	0.00	2.1	97.9	0.0	-2.53	0.76	0.87	2.40	3.7	0.002	0.53	0.0	0.03	14.78	0.00	2.127	3.35	0.30	2.0	98.0	0.0	1.81	1.24	0.77	0.87	1.64	26278	3388	42	0	210	0	0	logfile
✔	5GAG	8003	2022-12-17	2015-11-26	3.8	3.95	—	3.8	0.007	1.04	1.0	0.05	15.71	0.00	1.789	8.25	9.03	3.0	96.9	0.1	-3.35	0.79	0.90	1.98	3.8	0.004	0.61	0.0	0.03	15.10	0.00	1.013	14.50	0.79	3.5	96.4	0.1	-0.35	0.69	0.78	0.87	1.98	94030	3598	46	3049	473	0	0	logfile
✔	6T79	10390	2022-12-12	2019-10-21	3.2	3.08	3.18	3.1	0.006	0.85	0.0	0.05	28.26	0.01	2.178	5.33	0.00	2.0	98.0	0.0	-3.23	0.73	0.78	2.49	3.0	0.004	0.62	0.0	0.03	29.14	0.00	2.187	10.07	0.78	2.0	98.0	0.0	0.98	1.17	0.75	0.81	2.51	12121	776	10	290	0	0	0	logfile
✔	6MRU	9213	2022-12-12	2018-10-15	3.2	3.31	—	3.3	0.005	0.73	0.0	0.04	10.16	0.01	2.297	2.27	0.82	1.4	98.6	0.0	-1.59	0.72	0.83	3.34	3.3	0.002	0.46	0.0	0.03	13.26	0.00	2.192	3.53	0.00	0.6	99.4	0.0	5.66	3.08	0.75	0.86	1.81	29107	3705	13	0	0	0	0	logfile
✔	6oT5	20194	2022-12-18	2019-05-02	3.6	3.71	3.54	3.7	0.009	0.86	0.0	0.05	10.12	0.00	1.623	6.48	0.00	3.0	97.0	0.0	-2.73	0.65	0.76	3.18	3.7	0.003	0.55	0.0	0.03	13.40	0.00	1.949	6.19	0.00	5.6	94.4	0.0	0.49	0.83	0.68	0.79	2.80	33420	2444	8	0	52	0	15620	logfile
✔	6MRT	9212	2022-12-11	2018-10-15	2.8	2.93	—	2.9	0.008	0.90	0.0	0.05	10.67	0.01	2.260	1.61	0.82	1.1	98.9	0.0	-1.27	0.70	0.84	3.77	2.9	0.003	0.46	0.0	0.03	15.43	0.00	2.226	3.14	1.29	0.5	99.5	0.0	5.71	3.08	0.73	0.86	2.07	26868	3420	12	0	0	0	0	logfile
✔	6MHo	9115	2022-12-16	2018-09-18	3.4	3.50	3.44	3.5	0.005	0.72	0.0	0.04	7.36	0.00	2.108	2.96	0.00	2.7	97.3	0.0	-2.41	0.66	0.76	3.45	3.5	0.003	0.54	0.0	0.03	12.72	0.00	1.989	6.10	0.21	4.2	95.8	0.0	1.20	2.46	0.68	0.81	3.70	32224	2404	4	0	0	0	15184	logfile

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