Table showing results for June 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6N8L	0371	2021-06-05	2018-11-29	3.6	3.79	—	3.7	0.007	0.93	0.0	0.05	15.30	0.01	2.200	3.55	0.64	7.3	92.2	0.5	-4.50	0.80	0.87	3.56	3.7	0.003	0.59	1.0	0.03	16.07	0.00	2.059	9.10	0.47	7.4	92.5	0.1	-1.20	1.29	0.80	0.87	2.19	129926	6884	48	3479	210	0	0	logfile
✔	6NEQ	9358	2021-06-06	2018-12-18	3.32	3.85	—	3.5	0.001	0.37	0.0	0.03	12.81	0.00	1.949	3.27	0.35	10.3	88.1	1.6	-2.42	0.69	0.51	0.07	3.5	0.003	0.65	0.0	0.03	16.40	0.00	2.107	12.44	0.42	5.3	94.6	0.1	-0.19	2.08	0.85	0.84	1.32	65776	5509	32	952	147	0	0	logfile
✔	6LMW	0922	2021-06-02	2019-12-26	3.4	3.55	3.21	3.5	0.007	0.91	0.0	0.05	15.33	0.01	2.292	2.21	0.63	1.6	98.4	0.0	-5.34	0.53	0.73	3.03	3.5	0.002	0.62	0.0	0.03	16.35	0.00	2.222	5.96	0.31	1.4	98.6	0.0	2.58	0.48	0.69	0.83	2.47	11624	1472	8	0	0	0	0	logfile
✔	6WCC	21606	2021-06-02	2020-03-30	3.24	3.27	—	3.3	0.003	0.51	0.0	0.03	15.73	0.00	2.025	4.39	2.26	0.8	99.2	0.0	1.46	0.53	0.76	1.58	3.3	0.002	0.49	0.0	0.03	15.81	0.00	2.217	5.68	0.32	2.6	97.4	0.0	4.53	1.31	0.54	0.79	1.94	11629	734	6	0	5	12	5908	logfile
✔	6L3T	0825	2021-06-03	2019-10-15	2.34	2.41	2.27	2.4	0.011	1.07	0.0	0.05	16.88	0.01	2.306	1.05	3.61	1.0	99.0	0.0	-3.24	0.68	0.86	4.85	2.4	0.002	0.59	0.0	0.03	16.28	0.00	1.929	2.64	1.41	0.8	99.2	0.0	2.99	3.48	0.67	0.86	4.09	19722	1206	18	0	6	204	9588	logfile
✔	6L3U	0826	2021-06-03	2019-10-15	2.53	2.59	2.48	2.6	0.012	0.95	0.0	0.05	17.90	0.01	2.206	0.45	3.01	1.9	98.1	0.0	-2.86	0.64	0.84	4.02	2.6	0.002	0.53	0.0	0.03	16.73	0.00	1.969	2.04	1.31	0.5	99.5	0.0	2.78	0.94	0.64	0.85	3.01	19698	1206	18	0	12	174	9588	logfile
✔	6R86	4752	2021-06-01	2019-03-31	3.4	3.39	—	3.4	0.007	1.08	1.0	0.06	16.69	0.01	2.061	4.54	0.39	7.5	92.2	0.4	-4.05	0.77	0.84	3.15	3.4	0.002	0.58	0.0	0.03	16.35	0.00	1.969	10.38	0.41	7.1	92.8	0.1	-1.02	1.24	0.78	0.84	2.12	132446	7198	49	3539	41	0	0	logfile
✔	6MRU	9213	2021-06-05	2018-10-15	3.2	3.31	—	3.3	0.005	0.73	0.0	0.04	10.16	0.01	2.297	2.27	0.82	1.4	98.6	0.0	-1.59	0.72	0.83	3.34	3.3	0.003	0.47	0.0	0.03	13.45	0.00	2.200	3.24	0.03	0.6	99.4	0.0	5.43	3.90	0.76	0.86	1.92	29107	3705	13	0	0	0	0	logfile
✔	6WDF	21634	2021-06-04	2020-03-31	3.3	3.73	3.77	3.6	0.006	0.94	0.0	0.08	13.51	0.01	1.310	11.71	0.94	11.6	86.6	1.8	-4.80	0.81	0.82	1.42	3.6	0.003	0.66	0.0	0.03	16.07	0.01	2.010	17.79	0.73	8.8	91.1	0.1	-2.19	1.56	0.82	0.84	0.97	148582	6025	59	4733	0	0	0	logfile
✔	6RYR	10058	2021-06-02	2019-06-11	3.1	3.26	3.23	3.2	0.003	0.64	0.0	0.05	23.99	0.00	1.893	5.69	0.16	3.5	96.5	0.0	-0.14	0.76	0.82	2.48	3.2	0.003	0.56	0.0	0.03	25.96	0.00	2.129	9.23	0.24	3.2	96.8	0.0	0.92	0.41	0.78	0.85	2.57	17834	1451	11	298	16	0	0	logfile
✔	6MRW	9214	2021-06-05	2018-10-15	4.3	4.76	—	4.3	0.006	0.98	0.0	0.04	10.35	0.01	2.080	4.39	0.41	2.1	97.9	0.0	-0.19	0.82	0.84	—	4.3	0.003	0.53	0.0	0.03	11.82	0.01	2.129	6.78	0.00	2.1	97.9	0.0	5.84	0.76	0.83	0.86	—	31346	3990	14	0	0	0	0	logfile
✔	5LZF	4126	2021-06-04	2016-09-29	4.6	4.86	4.78	4.6	0.008	1.18	5.0	0.08	14.22	0.02	2.141	4.69	0.02	7.1	90.8	2.1	-2.74	0.83	0.85	—	4.6	0.003	0.74	0.0	0.03	16.20	0.01	2.005	25.13	0.04	8.4	91.2	0.4	-1.78	2.51	0.84	0.86	—	148005	5824	58	4779	2	0	0	logfile
✔	6NQB	0482	2021-06-04	2019-01-20	3.8	4.35	—	4.0	0.006	0.98	0.0	0.05	17.60	0.01	2.216	7.98	0.41	13.6	86.3	0.1	-5.36	0.86	0.79	0.88	4.0	0.003	0.65	0.0	0.03	17.63	0.01	2.046	18.66	0.41	12.0	87.9	0.1	-2.81	0.91	0.86	0.78	0.77	42570	1752	17	1341	1	0	0	logfile
✔	6MRT	9212	2021-06-05	2018-10-15	2.8	2.93	—	2.9	0.008	0.90	0.0	0.05	10.67	0.01	2.260	1.61	0.82	1.1	98.9	0.0	-1.27	0.70	0.84	3.77	2.9	0.003	0.46	0.0	0.03	15.38	0.00	2.229	2.75	1.26	0.4	99.6	0.0	5.51	3.07	0.73	0.86	2.25	26868	3420	12	0	0	0	0	logfile
✔	6T72	10389	2021-06-03	2019-10-21	3.7	3.79	—	3.8	0.013	1.64	0.0	0.11	14.69	0.02	2.167	4.27	0.00	2.1	97.9	0.0	-2.53	0.76	0.87	2.40	3.7	0.003	0.55	0.0	0.03	14.87	0.00	2.106	2.92	0.17	2.4	97.6	0.0	1.94	1.25	0.77	0.87	1.72	26278	3388	14	0	210	0	0	logfile
✔	5M6S	3451	2021-06-01	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	20.10	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.4	0.003	0.65	0.0	0.03	17.35	0.00	1.952	10.68	0.00	6.2	93.8	0.0	2.03	2.65	0.04	0.08	—	1593	98	1	0	0	0	793	logfile
✔	6oUo	20204	2021-06-03	2019-05-05	3.7	4.99	—	3.3	0.007	0.84	1.0	0.04	15.91	0.02	1.584	12.03	0.36	5.1	94.8	0.1	-3.86	0.89	0.75	0.10	3.3	0.004	0.75	0.0	0.03	17.19	0.01	1.916	33.39	0.81	6.4	93.6	0.0	-1.66	3.94	0.92	0.84	0.56	146867	6028	61	4642	14	0	0	logfile
✔	6RiU	4898	2021-06-01	2019-04-25	3.9	6.21	2.04	7.0	0.008	1.19	0.0	0.09	15.19	0.01	2.182	5.20	0.00	8.4	91.6	0.0	-5.77	0.59	0.69	0.56	7.1	0.002	0.69	0.0	0.03	17.16	0.00	2.076	12.13	1.32	3.9	96.1	0.0	0.15	1.58	0.60	0.75	1.05	2882	182	2	0	0	0	1430	logfile
✔	5LZA	4121	2021-06-03	2016-09-29	3.6	3.69	3.73	3.6	0.008	1.16	17.0	0.07	14.14	0.02	2.102	4.01	0.47	7.8	90.1	2.1	-3.44	0.74	0.86	1.62	3.6	0.003	0.69	0.0	0.03	15.79	0.01	2.077	14.39	0.87	8.4	91.3	0.3	-1.46	1.36	0.74	0.85	1.29	146037	5817	57	4684	2	0	0	logfile
✔	6RJ9	4900	2021-06-02	2019-04-26	3.2	3.37	—	3.3	0.006	0.78	0.0	0.05	15.21	0.01	2.292	2.59	0.28	6.7	93.3	0.0	-3.87	0.67	0.86	2.60	3.3	0.002	0.48	0.0	0.03	15.99	0.00	2.258	5.01	0.28	3.7	96.3	0.0	-0.27	0.97	0.67	0.87	1.86	11874	1202	5	97	0	0	0	logfile

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