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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6oRE | 20173 | 2022-05-18 | 2019-04-30 | 2.9 | 3.38 | — | 3.0 | 0.008 | 0.75 | 2.0 | 0.04 | 14.09 | 0.02 | 1.454 | 4.62 | 0.34 | 3.4 | 96.5 | 0.1 | -3.76 | 0.91 | 0.91 | 3.69 | 3.0 | 0.004 | 0.68 | 0.0 | 0.03 | 15.27 | 0.01 | 1.825 | 13.18 | 3.13 | 3.9 | 96.1 | 0.0 | -0.30 | 0.55 | 0.91 | 0.91 | 2.73 | 144774 | 5710 | 67 | 4642 | 438 | 0 | 0 | logfile |
✔ | 6L3T | 0825 | 2022-05-14 | 2019-10-15 | 2.34 | 2.41 | 2.27 | 2.4 | 0.012 | 1.03 | 0.0 | 0.05 | 16.76 | 0.01 | 2.306 | 1.05 | 3.61 | 1.0 | 99.0 | 0.0 | -3.24 | 0.68 | 0.86 | 4.85 | 2.4 | 0.003 | 0.60 | 0.0 | 0.03 | 16.29 | 0.00 | 1.929 | 2.44 | 1.41 | 1.1 | 98.9 | 0.0 | 2.69 | 1.60 | 0.69 | 0.87 | 4.48 | 19722 | 1206 | 18 | 0 | 6 | 204 | 9588 | logfile |
✔ | 5GAD | 8000 | 2022-05-17 | 2015-11-24 | 3.7 | 4.17 | — | 3.9 | 0.009 | 1.11 | 1.0 | 0.05 | 15.93 | 0.01 | 1.737 | 9.28 | 10.34 | 3.5 | 96.5 | 0.1 | -3.19 | 0.77 | 0.79 | 1.52 | 3.9 | 0.007 | 0.67 | 0.0 | 0.03 | 15.21 | 0.01 | 0.987 | 18.22 | 0.58 | 3.8 | 96.1 | 0.1 | -0.19 | 1.60 | 0.81 | 0.88 | 1.37 | 98006 | 4087 | 49 | 3049 | 507 | 0 | 0 | logfile |
✔ | 6S0K | 10073 | 2022-05-17 | 2019-06-17 | 3.1 | 3.25 | — | 3.2 | 0.005 | 0.78 | 1.0 | 0.04 | 14.55 | 0.01 | 2.070 | 4.25 | 0.73 | 4.3 | 95.4 | 0.3 | -3.18 | 0.74 | 0.86 | 2.55 | 3.1 | 0.004 | 0.63 | 1.0 | 0.03 | 15.07 | 0.00 | 1.906 | 11.26 | 0.08 | 4.8 | 95.1 | 0.1 | -0.59 | 1.46 | 0.75 | 0.87 | 2.33 | 98708 | 4387 | 39 | 3006 | 69 | 0 | 0 | logfile |
✔ | 6PXM | 20521 | 2022-05-16 | 2019-07-26 | 2.1 | 2.33 | 2.32 | 2.4 | 0.008 | 0.71 | 0.0 | 0.04 | 16.03 | 0.00 | 2.392 | 1.60 | 0.00 | 0.6 | 99.4 | 0.0 | -3.44 | 0.79 | 0.89 | 5.35 | 2.3 | 0.002 | 0.44 | 0.0 | 0.03 | 17.75 | 0.00 | 2.211 | 4.41 | 0.14 | 1.8 | 98.2 | 0.0 | 5.26 | 1.48 | 0.79 | 0.90 | 3.80 | 32736 | 4080 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 6DNC | 7970 | 2022-05-23 | 2018-06-06 | 3.7 | 6.35 | — | 4.1 | 0.008 | 1.14 | 2.0 | 0.09 | 13.50 | 0.01 | 1.764 | 6.87 | 1.11 | 13.5 | 84.5 | 2.0 | -4.52 | 0.87 | 0.73 | 0.26 | 4.1 | 0.004 | 0.68 | 0.0 | 0.03 | 15.83 | 0.00 | 1.979 | 28.91 | 0.75 | 9.3 | 90.6 | 0.1 | -1.48 | 2.46 | 0.96 | 0.91 | 0.38 | 152438 | 6520 | 59 | 4735 | 0 | 0 | 0 | logfile |
✔ | 6JYL | 9718 | 2022-05-14 | 2019-04-26 | 3.37 | 4.00 | — | 3.4 | 0.008 | 0.85 | 0.0 | 0.05 | 24.45 | 0.01 | 2.086 | 2.78 | 0.28 | 4.8 | 95.0 | 0.2 | -3.67 | 0.90 | 0.87 | 2.92 | 3.5 | 0.003 | 0.59 | 0.0 | 0.03 | 24.64 | 0.00 | 1.422 | 7.84 | 0.19 | 4.2 | 95.8 | 0.0 | 0.76 | 0.56 | 0.90 | 0.88 | 1.94 | 16136 | 1265 | 11 | 292 | 3 | 0 | 0 | logfile |
✔ | 6N8L | 0371 | 2022-05-15 | 2018-11-29 | 3.6 | 3.79 | — | 3.7 | 0.007 | 0.93 | 0.0 | 0.05 | 15.30 | 0.01 | 2.200 | 3.60 | 0.64 | 7.3 | 92.2 | 0.5 | -4.50 | 0.80 | 0.87 | 3.56 | 3.7 | 0.003 | 0.61 | 1.0 | 0.03 | 16.19 | 0.00 | 2.092 | 9.52 | 0.66 | 7.3 | 92.6 | 0.1 | -1.28 | 1.26 | 0.80 | 0.87 | 2.20 | 129926 | 6884 | 48 | 3479 | 210 | 0 | 0 | logfile |
✔ | 6VPS | 21316 | 2022-05-12 | 2020-02-04 | 2.6 | 2.62 | 2.52 | 2.7 | 0.011 | 1.14 | 10.0 | 0.13 | 20.44 | 0.01 | 2.501 | 19.04 | 0.00 | 6.9 | 93.1 | 0.0 | -3.61 | 0.49 | 0.90 | 6.11 | 2.7 | 0.004 | 0.53 | 0.0 | 0.03 | 20.06 | 0.00 | 2.403 | 4.27 | 0.98 | 6.9 | 93.1 | 0.0 | -3.78 | 1.19 | 0.48 | 0.88 | 6.47 | 2736 | 279 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VQi | 21351 | 2022-05-12 | 2020-02-05 | 4.3 | 4.89 | — | 4.2 | 0.005 | 1.14 | 0.0 | 0.05 | 3.90 | 0.01 | 2.327 | 1.95 | 0.00 | 1.3 | 98.2 | 0.5 | 2.16 | 0.56 | 0.73 | — | 4.1 | 0.002 | 0.54 | 0.0 | 0.03 | 3.92 | 0.00 | 2.243 | 3.65 | 0.00 | 5.4 | 94.5 | 0.1 | 3.11 | 0.74 | 0.57 | 0.74 | — | 5278 | 1062 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SE6 | 10152 | 2022-05-13 | 2019-07-29 | 3.5 | 4.16 | — | 3.9 | 0.010 | 1.00 | 0.0 | 0.06 | 28.15 | 0.01 | 2.247 | 3.86 | 0.00 | 1.2 | 98.8 | 0.0 | -3.83 | 0.88 | 0.85 | 1.92 | 3.9 | 0.004 | 0.64 | 0.0 | 0.03 | 28.57 | 0.00 | 2.079 | 12.86 | 0.63 | 1.5 | 98.5 | 0.0 | 1.31 | 0.57 | 0.86 | 0.83 | 1.46 | 12068 | 771 | 11 | 290 | 0 | 0 | 0 | logfile |
✔ | 6T72 | 10389 | 2022-05-15 | 2019-10-21 | 3.7 | 3.79 | — | 3.8 | 0.013 | 1.64 | 0.0 | 0.11 | 14.69 | 0.02 | 2.167 | 4.27 | 0.00 | 2.1 | 97.9 | 0.0 | -2.53 | 0.76 | 0.87 | 2.40 | 3.8 | 0.002 | 0.52 | 0.0 | 0.03 | 14.78 | 0.00 | 2.134 | 3.23 | 0.17 | 1.8 | 98.2 | 0.0 | 1.93 | 1.24 | 0.78 | 0.87 | 1.63 | 26278 | 3388 | 14 | 0 | 210 | 0 | 0 | logfile |
✔ | 6S61 | 10101 | 2022-05-14 | 2019-07-02 | 1.84 | 1.89 | 1.85 | 1.9 | 0.011 | 1.36 | 0.0 | 0.06 | 12.21 | 0.01 | 0.312 | 2.62 | 1.29 | 1.8 | 98.2 | 0.0 | 3.69 | 0.77 | 0.86 | 8.46 | 1.9 | 0.003 | 0.57 | 0.0 | 0.03 | 14.82 | 0.00 | 1.798 | 5.19 | 0.65 | 1.8 | 98.2 | 0.0 | 4.54 | 0.74 | 0.79 | 0.89 | 8.65 | 71060 | 4128 | 72 | 0 | 30 | 3854 | 32904 | logfile |
✔ | 6MRW | 9214 | 2022-05-13 | 2018-10-15 | 4.3 | 4.76 | — | 4.3 | 0.006 | 0.98 | 0.0 | 0.04 | 10.35 | 0.01 | 2.080 | 4.61 | 0.41 | 2.1 | 97.9 | 0.0 | -0.19 | 0.82 | 0.84 | — | 4.3 | 0.007 | 0.64 | 1.0 | 0.03 | 11.80 | 0.00 | 2.080 | 7.14 | 0.00 | 2.0 | 98.0 | 0.0 | 6.06 | 1.26 | 0.83 | 0.86 | — | 31346 | 3990 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 6MRT | 9212 | 2022-05-12 | 2018-10-15 | 2.8 | 2.93 | — | 2.9 | 0.008 | 0.90 | 0.0 | 0.05 | 10.67 | 0.01 | 2.260 | 1.61 | 0.82 | 1.1 | 98.9 | 0.0 | -1.27 | 0.70 | 0.84 | 3.77 | 2.9 | 0.003 | 0.46 | 0.0 | 0.03 | 15.43 | 0.00 | 2.226 | 3.14 | 1.29 | 0.5 | 99.5 | 0.0 | 5.71 | 3.08 | 0.73 | 0.87 | 2.07 | 26868 | 3420 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RJD | 4902 | 2022-05-13 | 2019-04-26 | 3.3 | 3.40 | — | 3.3 | 0.006 | 0.90 | 0.0 | 0.05 | 18.11 | 0.01 | 2.259 | 2.97 | 0.27 | 6.9 | 93.1 | 0.0 | -3.53 | 0.65 | 0.83 | 2.84 | 3.3 | 0.006 | 0.74 | 0.0 | 0.03 | 18.58 | 0.00 | 2.247 | 6.45 | 0.14 | 4.9 | 95.1 | 0.0 | -0.26 | 0.48 | 0.66 | 0.83 | 2.20 | 9332 | 831 | 4 | 123 | 0 | 0 | 0 | logfile |
✔ | 6RiU | 4898 | 2022-05-12 | 2019-04-25 | 3.9 | 6.21 | 2.04 | 7.0 | 0.008 | 1.19 | 0.0 | 0.09 | 15.19 | 0.01 | 2.182 | 5.20 | 0.00 | 8.4 | 91.6 | 0.0 | -5.77 | 0.59 | 0.69 | 0.56 | 7.1 | 0.003 | 0.67 | 0.0 | 0.03 | 16.53 | 0.00 | 2.057 | 13.17 | 0.00 | 5.1 | 94.9 | 0.0 | -0.39 | 1.43 | 0.61 | 0.75 | 1.30 | 2882 | 182 | 2 | 0 | 0 | 0 | 1430 | logfile |
✔ | 6GC7 | 4382 | 2022-05-12 | 2018-04-17 | 4.3 | 4.85 | — | 4.4 | 0.003 | 0.67 | 0.0 | 0.03 | 13.13 | 0.00 | 2.251 | 5.14 | 0.28 | 5.9 | 93.9 | 0.1 | -4.27 | 0.76 | 0.61 | — | 4.4 | 0.003 | 0.60 | 0.0 | 0.03 | 15.02 | 0.00 | 1.979 | 22.87 | 0.07 | 8.8 | 91.1 | 0.1 | -1.90 | 1.64 | 0.91 | 0.86 | — | 54410 | 1738 | 17 | 1901 | 0 | 0 | 0 | logfile |
✔ | 6oT5 | 20194 | 2022-05-16 | 2019-05-02 | 3.6 | 3.71 | 3.54 | 3.7 | 0.009 | 0.86 | 0.0 | 0.05 | 10.12 | 0.00 | 1.623 | 6.48 | 0.00 | 3.0 | 97.0 | 0.0 | -2.73 | 0.65 | 0.76 | 3.18 | 3.7 | 0.003 | 0.55 | 0.0 | 0.03 | 13.40 | 0.00 | 1.949 | 6.19 | 0.00 | 5.6 | 94.4 | 0.0 | 0.49 | 0.83 | 0.68 | 0.79 | 2.80 | 33420 | 2444 | 8 | 0 | 52 | 0 | 15620 | logfile |
✔ | 5LZC | 4123 | 2022-05-23 | 2016-09-29 | 4.8 | 5.11 | 5.27 | 4.8 | 0.009 | 1.21 | 10.0 | 0.08 | 12.67 | 0.02 | 1.994 | 5.33 | 0.11 | 5.7 | 92.4 | 1.8 | -1.87 | 0.82 | 0.82 | — | 4.8 | 0.004 | 0.76 | 1.0 | 0.03 | 14.83 | 0.01 | 1.933 | 25.21 | 0.02 | 7.7 | 91.9 | 0.4 | -1.93 | 1.42 | 0.83 | 0.83 | — | 152981 | 6432 | 64 | 4785 | 5 | 2 | 0 | logfile |