Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6YW7	10960	2022-07-03	2020-04-29	4.5	5.21	—	4.7	0.021	3.50	0.0	0.09	6.70	0.01	2.034	2.17	0.00	4.5	94.7	0.9	-1.45	0.57	0.32	—	4.6	0.003	1.00	0.0	0.02	5.16	0.00	2.215	9.65	0.00	10.5	89.4	0.2	-3.99	6.44	0.82	0.75	—	5426	1788	9	0	2	0	0	logfile
✔	7BL5	12218	2022-07-06	2021-01-18	3.3	3.74	—	3.5	0.002	0.45	0.0	0.03	14.15	0.00	2.029	11.86	0.11	5.7	94.3	0.0	-1.05	0.75	0.79	1.02	3.5	0.004	0.64	1.0	0.03	15.81	0.00	1.958	17.19	0.88	7.9	92.1	0.0	-1.73	0.57	0.76	0.83	1.21	98927	4348	46	3033	3	27	0	logfile
✔	6WKT	21708	2022-07-02	2020-04-16	3.4	3.21	3.09	3.3	0.004	0.81	0.0	0.05	13.97	0.01	2.329	0.65	0.00	1.9	98.1	0.0	-3.42	0.65	0.75	3.69	3.3	0.003	0.59	0.0	0.03	15.90	0.00	2.202	11.45	0.00	4.8	95.2	0.0	3.63	1.34	0.65	0.75	3.76	3152	424	4	0	0	0	0	logfile
✔	7o6E	12738	2022-07-06	2021-04-10	2.1	1.78	2.15	1.6	0.017	1.10	0.0	0.07	18.13	0.01	2.110	3.61	0.00	2.3	97.7	0.0	2.10	0.87	0.88	6.02	1.6	0.004	0.52	0.0	0.03	18.17	0.01	2.172	3.96	0.38	0.6	99.4	0.0	4.21	0.27	0.88	0.89	5.41	35304	4248	48	0	0	1392	0	logfile
✔	7E4T	30987	2022-07-05	2021-02-15	3.0	3.26	3.08	3.3	0.007	0.79	0.0	0.04	13.89	0.00	2.278	6.59	1.01	1.1	98.9	0.0	0.77	0.50	0.68	3.26	3.3	0.002	0.47	0.0	0.03	16.68	0.00	2.181	5.83	3.34	1.2	98.8	0.0	2.36	1.24	0.71	0.85	3.19	22276	2656	8	0	24	0	0	logfile
✔	6Y5E	10695	2022-07-04	2020-02-25	3.15	3.68	—	3.3	0.014	1.16	0.0	0.07	25.82	0.01	2.429	1.10	0.21	1.9	98.0	0.1	0.54	0.84	0.83	4.07	3.3	0.003	0.59	0.0	0.03	26.11	0.00	2.061	8.19	0.31	1.8	98.2	0.0	1.99	0.64	0.84	0.84	2.42	15292	1120	18	306	9	0	0	logfile
✔	7D80	30611	2022-07-10	2020-10-06	4.1	6.37	—	2.8	0.011	1.03	0.0	0.05	16.93	0.01	1.560	8.57	0.88	12.7	86.9	0.3	-5.50	0.81	0.63	—	2.8	0.005	0.66	0.0	0.03	16.41	0.01	1.960	32.50	0.00	10.8	89.0	0.2	-2.88	0.81	0.94	0.88	—	150808	6218	57	4761	0	0	0	logfile
✔	7D6Z	30598	2022-07-09	2020-10-02	3.4	3.68	—	3.5	0.007	0.77	0.0	0.04	14.81	0.01	1.815	3.92	0.39	10.0	89.6	0.4	-5.33	0.89	0.91	2.53	3.5	0.005	0.62	0.0	0.03	14.95	0.00	1.674	10.13	0.43	9.9	89.8	0.3	-2.48	0.39	0.89	0.91	2.00	148863	5970	58	4761	0	0	0	logfile
✔	7BL6	12219	2022-07-06	2021-01-18	4.0	7.11	—	4.0	0.002	0.42	0.0	0.03	13.17	0.00	2.117	11.03	0.07	4.7	95.3	0.1	-0.28	0.92	0.83	—	4.0	0.004	0.66	0.0	0.03	16.96	0.00	1.946	35.11	0.17	8.2	91.8	0.1	-1.70	3.13	0.95	0.82	—	92769	3600	42	3016	5	27	0	logfile
✔	7LV8	23529	2022-07-03	2021-02-24	3.4	3.85	3.57	3.8	0.003	0.65	0.0	0.04	27.28	0.00	1.334	3.06	0.17	2.7	97.3	0.0	-3.26	0.70	0.78	0.97	3.9	0.003	0.58	0.0	0.03	27.73	0.00	2.150	9.74	0.33	1.9	98.1	0.0	2.31	0.58	0.70	0.79	1.13	10651	764	10	242	0	0	0	logfile
✔	7D4P	30575	2022-07-05	2020-09-24	2.7	3.03	2.86	3.0	0.007	0.80	0.0	0.04	13.57	0.00	2.269	4.70	0.67	1.2	98.8	0.0	2.42	0.58	0.76	3.11	3.0	0.002	0.48	0.0	0.03	15.83	0.00	2.208	4.35	1.01	0.9	99.1	0.0	2.71	0.61	0.59	0.78	2.69	22472	2676	8	0	28	0	0	logfile
✔	6YE4	10789	2022-07-03	2020-03-24	3.2	3.33	3.07	3.3	0.026	1.69	0.0	0.10	14.61	0.01	2.373	3.02	0.00	0.9	99.1	0.0	-3.36	0.73	0.88	2.50	3.3	0.003	0.52	0.0	0.03	16.50	0.00	2.347	5.29	0.22	2.4	97.6	0.0	3.50	0.93	0.67	0.87	1.40	9140	1180	10	0	5	0	0	logfile
✔	7C0M	30267	2022-07-06	2020-05-01	3.9	4.76	—	3.8	0.011	0.83	0.0	0.05	27.43	0.00	2.189	13.43	0.73	5.5	94.5	0.0	-1.85	0.76	0.57	1.06	3.8	0.003	0.62	0.0	0.03	27.39	0.00	2.134	12.79	0.10	3.5	96.5	0.0	2.01	0.67	0.88	0.76	0.73	29816	2234	24	580	2	0	0	logfile
✔	6Y5D	10694	2022-07-06	2020-02-25	4.1	5.00	—	4.0	0.013	1.23	0.0	0.07	25.87	0.01	2.251	1.76	0.11	2.0	97.9	0.1	0.59	0.86	0.76	—	4.0	0.003	0.61	0.0	0.03	26.23	0.00	1.921	12.91	0.00	2.4	97.6	0.0	1.11	1.25	0.88	0.81	—	30372	2218	31	612	11	0	0	logfile
✔	7D4Q	30576	2022-07-05	2020-09-24	2.74	2.99	2.80	3.0	0.009	0.78	0.0	0.04	12.13	0.00	2.254	6.42	0.67	1.4	98.6	0.0	2.70	0.47	0.71	3.84	3.0	0.003	0.48	0.0	0.03	15.53	0.00	2.196	6.27	1.13	1.4	98.6	0.0	2.53	0.44	0.69	0.87	3.86	22388	2672	8	0	24	0	0	logfile
✔	6ZBL	11157	2022-07-07	2020-06-08	3.6	4.39	3.70	4.0	0.014	1.20	0.0	0.07	14.69	0.01	2.400	1.54	0.00	0.7	99.3	0.0	-0.56	0.87	0.79	1.33	4.0	0.003	0.47	0.0	0.03	15.53	0.00	2.015	2.99	0.00	1.0	99.0	0.0	4.19	1.34	0.88	0.82	0.89	39074	2326	4	0	0	0	19788	logfile
✔	7K61	22686	2022-07-04	2020-09-17	2.85	3.27	—	3.1	0.007	0.67	0.0	0.04	27.29	0.00	2.130	6.03	0.00	1.5	98.5	0.0	1.15	0.85	0.86	4.35	3.1	0.004	0.57	0.0	0.03	27.87	0.00	2.129	7.81	1.25	2.1	97.9	0.0	2.03	0.36	0.86	0.88	3.49	17723	1222	12	394	0	0	0	logfile
✔	7KTQ	23026	2022-07-03	2020-11-24	3.3	3.36	—	3.3	0.008	0.84	0.0	0.05	29.36	0.01	2.201	6.42	0.16	1.5	98.5	0.0	-2.43	0.77	0.85	3.63	3.3	0.003	0.54	0.0	0.03	29.25	0.00	2.142	6.51	0.32	2.3	97.7	0.0	3.18	1.43	0.78	0.87	2.38	12745	752	10	331	0	0	0	logfile
✔	7K5Y	22684	2022-07-04	2020-09-17	2.76	3.18	—	3.1	0.004	0.65	0.0	0.04	27.13	0.00	2.108	7.06	0.00	1.4	98.6	0.0	1.74	0.77	0.81	4.49	3.1	0.004	0.58	0.0	0.03	27.60	0.00	2.171	6.85	1.64	2.0	98.0	0.0	1.86	1.13	0.76	0.83	3.76	18258	1297	13	394	0	0	0	logfile
✔	7JGG	22326	2022-07-03	2020-07-19	4.88	8.00	—	7.7	0.002	0.46	0.0	0.03	13.22	0.00	1.988	54.49	0.00	3.3	96.5	0.2	1.67	0.66	0.64	—	7.5	0.002	0.46	0.0	0.03	12.61	0.00	1.976	80.83	0.00	4.5	95.5	0.0	1.72	1.70	0.67	0.69	—	4210	506	1	0	0	0	28	logfile

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