Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6oRE	20173	2022-05-18	2019-04-30	2.9	3.38	—	3.0	0.008	0.75	2.0	0.04	14.09	0.02	1.454	4.62	0.34	3.4	96.5	0.1	-3.76	0.91	0.91	3.69	3.0	0.004	0.68	0.0	0.03	15.27	0.01	1.825	13.18	3.13	3.9	96.1	0.0	-0.30	0.55	0.91	0.91	2.73	144774	5710	67	4642	438	0	0	logfile
✔	6L3T	0825	2022-05-14	2019-10-15	2.34	2.41	2.27	2.4	0.012	1.03	0.0	0.05	16.76	0.01	2.306	1.05	3.61	1.0	99.0	0.0	-3.24	0.68	0.86	4.85	2.4	0.003	0.60	0.0	0.03	16.29	0.00	1.929	2.44	1.41	1.1	98.9	0.0	2.69	1.60	0.69	0.87	4.48	19722	1206	18	0	6	204	9588	logfile
✔	5GAD	8000	2022-05-17	2015-11-24	3.7	4.17	—	3.9	0.009	1.11	1.0	0.05	15.93	0.01	1.737	9.28	10.34	3.5	96.5	0.1	-3.19	0.77	0.79	1.52	3.9	0.007	0.67	0.0	0.03	15.21	0.01	0.987	18.22	0.58	3.8	96.1	0.1	-0.19	1.60	0.81	0.88	1.37	98006	4087	49	3049	507	0	0	logfile
✔	6S0K	10073	2022-05-17	2019-06-17	3.1	3.25	—	3.2	0.005	0.78	1.0	0.04	14.55	0.01	2.070	4.25	0.73	4.3	95.4	0.3	-3.18	0.74	0.86	2.55	3.1	0.004	0.63	1.0	0.03	15.07	0.00	1.906	11.26	0.08	4.8	95.1	0.1	-0.59	1.46	0.75	0.87	2.33	98708	4387	39	3006	69	0	0	logfile
✔	6PXM	20521	2022-05-16	2019-07-26	2.1	2.33	2.32	2.4	0.008	0.71	0.0	0.04	16.03	0.00	2.392	1.60	0.00	0.6	99.4	0.0	-3.44	0.79	0.89	5.35	2.3	0.002	0.44	0.0	0.03	17.75	0.00	2.211	4.41	0.14	1.8	98.2	0.0	5.26	1.48	0.79	0.90	3.80	32736	4080	24	0	0	0	0	logfile
✔	6DNC	7970	2022-05-23	2018-06-06	3.7	6.35	—	4.1	0.008	1.14	2.0	0.09	13.50	0.01	1.764	6.87	1.11	13.5	84.5	2.0	-4.52	0.87	0.73	0.26	4.1	0.004	0.68	0.0	0.03	15.83	0.00	1.979	28.91	0.75	9.3	90.6	0.1	-1.48	2.46	0.96	0.91	0.38	152438	6520	59	4735	0	0	0	logfile
✔	6JYL	9718	2022-05-14	2019-04-26	3.37	4.00	—	3.4	0.008	0.85	0.0	0.05	24.45	0.01	2.086	2.78	0.28	4.8	95.0	0.2	-3.67	0.90	0.87	2.92	3.5	0.003	0.59	0.0	0.03	24.64	0.00	1.422	7.84	0.19	4.2	95.8	0.0	0.76	0.56	0.90	0.88	1.94	16136	1265	11	292	3	0	0	logfile
✔	6N8L	0371	2022-05-15	2018-11-29	3.6	3.79	—	3.7	0.007	0.93	0.0	0.05	15.30	0.01	2.200	3.60	0.64	7.3	92.2	0.5	-4.50	0.80	0.87	3.56	3.7	0.003	0.61	1.0	0.03	16.19	0.00	2.092	9.52	0.66	7.3	92.6	0.1	-1.28	1.26	0.80	0.87	2.20	129926	6884	48	3479	210	0	0	logfile
✔	6VPS	21316	2022-05-12	2020-02-04	2.6	2.62	2.52	2.7	0.011	1.14	10.0	0.13	20.44	0.01	2.501	19.04	0.00	6.9	93.1	0.0	-3.61	0.49	0.90	6.11	2.7	0.004	0.53	0.0	0.03	20.06	0.00	2.403	4.27	0.98	6.9	93.1	0.0	-3.78	1.19	0.48	0.88	6.47	2736	279	9	0	0	0	0	logfile
✔	6VQi	21351	2022-05-12	2020-02-05	4.3	4.89	—	4.2	0.005	1.14	0.0	0.05	3.90	0.01	2.327	1.95	0.00	1.3	98.2	0.5	2.16	0.56	0.73	—	4.1	0.002	0.54	0.0	0.03	3.92	0.00	2.243	3.65	0.00	5.4	94.5	0.1	3.11	0.74	0.57	0.74	—	5278	1062	8	0	0	0	0	logfile
✔	6SE6	10152	2022-05-13	2019-07-29	3.5	4.16	—	3.9	0.010	1.00	0.0	0.06	28.15	0.01	2.247	3.86	0.00	1.2	98.8	0.0	-3.83	0.88	0.85	1.92	3.9	0.004	0.64	0.0	0.03	28.57	0.00	2.079	12.86	0.63	1.5	98.5	0.0	1.31	0.57	0.86	0.83	1.46	12068	771	11	290	0	0	0	logfile
✔	6T72	10389	2022-05-15	2019-10-21	3.7	3.79	—	3.8	0.013	1.64	0.0	0.11	14.69	0.02	2.167	4.27	0.00	2.1	97.9	0.0	-2.53	0.76	0.87	2.40	3.8	0.002	0.52	0.0	0.03	14.78	0.00	2.134	3.23	0.17	1.8	98.2	0.0	1.93	1.24	0.78	0.87	1.63	26278	3388	14	0	210	0	0	logfile
✔	6S61	10101	2022-05-14	2019-07-02	1.84	1.89	1.85	1.9	0.011	1.36	0.0	0.06	12.21	0.01	0.312	2.62	1.29	1.8	98.2	0.0	3.69	0.77	0.86	8.46	1.9	0.003	0.57	0.0	0.03	14.82	0.00	1.798	5.19	0.65	1.8	98.2	0.0	4.54	0.74	0.79	0.89	8.65	71060	4128	72	0	30	3854	32904	logfile
✔	6MRW	9214	2022-05-13	2018-10-15	4.3	4.76	—	4.3	0.006	0.98	0.0	0.04	10.35	0.01	2.080	4.61	0.41	2.1	97.9	0.0	-0.19	0.82	0.84	—	4.3	0.007	0.64	1.0	0.03	11.80	0.00	2.080	7.14	0.00	2.0	98.0	0.0	6.06	1.26	0.83	0.86	—	31346	3990	14	0	0	0	0	logfile
✔	6MRT	9212	2022-05-12	2018-10-15	2.8	2.93	—	2.9	0.008	0.90	0.0	0.05	10.67	0.01	2.260	1.61	0.82	1.1	98.9	0.0	-1.27	0.70	0.84	3.77	2.9	0.003	0.46	0.0	0.03	15.43	0.00	2.226	3.14	1.29	0.5	99.5	0.0	5.71	3.08	0.73	0.87	2.07	26868	3420	12	0	0	0	0	logfile
✔	6RJD	4902	2022-05-13	2019-04-26	3.3	3.40	—	3.3	0.006	0.90	0.0	0.05	18.11	0.01	2.259	2.97	0.27	6.9	93.1	0.0	-3.53	0.65	0.83	2.84	3.3	0.006	0.74	0.0	0.03	18.58	0.00	2.247	6.45	0.14	4.9	95.1	0.0	-0.26	0.48	0.66	0.83	2.20	9332	831	4	123	0	0	0	logfile
✔	6RiU	4898	2022-05-12	2019-04-25	3.9	6.21	2.04	7.0	0.008	1.19	0.0	0.09	15.19	0.01	2.182	5.20	0.00	8.4	91.6	0.0	-5.77	0.59	0.69	0.56	7.1	0.003	0.67	0.0	0.03	16.53	0.00	2.057	13.17	0.00	5.1	94.9	0.0	-0.39	1.43	0.61	0.75	1.30	2882	182	2	0	0	0	1430	logfile
✔	6GC7	4382	2022-05-12	2018-04-17	4.3	4.85	—	4.4	0.003	0.67	0.0	0.03	13.13	0.00	2.251	5.14	0.28	5.9	93.9	0.1	-4.27	0.76	0.61	—	4.4	0.003	0.60	0.0	0.03	15.02	0.00	1.979	22.87	0.07	8.8	91.1	0.1	-1.90	1.64	0.91	0.86	—	54410	1738	17	1901	0	0	0	logfile
✔	6oT5	20194	2022-05-16	2019-05-02	3.6	3.71	3.54	3.7	0.009	0.86	0.0	0.05	10.12	0.00	1.623	6.48	0.00	3.0	97.0	0.0	-2.73	0.65	0.76	3.18	3.7	0.003	0.55	0.0	0.03	13.40	0.00	1.949	6.19	0.00	5.6	94.4	0.0	0.49	0.83	0.68	0.79	2.80	33420	2444	8	0	52	0	15620	logfile
✔	5LZC	4123	2022-05-23	2016-09-29	4.8	5.11	5.27	4.8	0.009	1.21	10.0	0.08	12.67	0.02	1.994	5.33	0.11	5.7	92.4	1.8	-1.87	0.82	0.82	—	4.8	0.004	0.76	1.0	0.03	14.83	0.01	1.933	25.21	0.02	7.7	91.9	0.4	-1.93	1.42	0.83	0.83	—	152981	6432	64	4785	5	2	0	logfile

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