Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7FGi	31582	2023-08-25	2021-07-27	2.51	2.92	—	2.7	0.012	0.87	0.0	0.05	16.62	0.00	1.814	1.37	2.16	3.0	97.0	0.0	-0.36	0.77	0.79	3.39	2.7	0.002	0.47	0.0	0.04	16.59	0.00	2.181	1.56	1.17	1.3	98.7	0.0	0.72	0.33	0.85	0.91	3.64	42288	5256	24	24	36	0	0	logfile
✔	7UXU	26862	2023-08-10	2022-05-06	2.74	3.09	2.80	3.1	0.007	1.01	0.0	0.06	14.12	0.01	2.519	0.00	0.00	1.9	98.1	0.0	-0.46	0.58	0.88	5.36	3.0	0.002	0.52	0.0	0.04	16.52	0.00	2.133	1.60	0.62	1.7	98.3	0.0	0.38	1.29	0.54	0.86	4.10	8776	536	8	0	4	0	4268	logfile
✔	7LiK	23381	2023-08-18	2021-01-27	2.91	3.15	—	3.2	0.007	0.93	0.0	0.06	14.31	0.01	2.239	2.52	3.02	6.8	93.2	0.0	-1.80	0.79	0.86	3.33	3.2	0.005	0.77	0.0	0.05	16.30	0.01	2.318	1.66	2.51	7.1	92.9	0.0	-1.17	0.25	0.80	0.88	2.68	130800	15900	60	0	60	0	0	logfile
✔	8E48	27883	2023-08-13	2022-08-17	2.27	2.95	2.47	2.8	0.005	0.52	0.0	0.03	12.64	0.02	1.808	1.21	0.53	4.6	95.4	0.0	0.36	0.69	0.84	3.07	2.7	0.005	0.72	0.0	0.04	13.92	0.01	1.776	1.71	1.70	6.1	93.8	0.1	-0.67	0.72	0.71	0.90	5.14	115959	1179	11	3016	1	0	41918	logfile
✔	8E35	27857	2023-08-13	2022-08-16	2.27	2.92	2.48	2.8	0.009	0.45	0.0	0.03	12.21	0.02	2.028	1.04	0.00	4.6	95.4	0.0	0.37	0.75	0.86	3.34	2.7	0.004	0.60	0.0	0.04	13.40	0.01	1.960	1.76	0.53	5.6	94.4	0.0	-0.52	0.64	0.71	0.89	5.15	115840	1179	11	3016	1	1	41853	logfile
✔	8FMY	29300	2023-08-11	2022-12-26	2.66	3.65	2.84	3.4	0.008	1.16	0.0	0.06	12.10	0.01	2.417	0.31	0.00	2.2	97.8	0.0	-1.16	0.89	0.88	4.56	3.4	0.002	0.56	0.0	0.04	14.14	0.00	2.354	1.76	0.73	3.2	96.8	0.0	1.03	1.49	0.83	0.83	3.32	9597	1260	3	0	0	0	0	logfile
✔	8oRG	17123	2023-08-09	2023-04-13	2.3	2.70	2.18	2.6	0.010	1.26	0.0	0.08	11.92	0.01	2.462	0.00	0.00	2.4	97.6	0.0	-2.52	0.32	0.76	4.82	2.6	0.003	0.57	0.0	0.05	17.00	0.00	2.261	1.77	2.63	1.6	98.4	0.0	-2.71	1.18	0.37	0.83	4.10	3966	258	3	0	0	0	2025	logfile
✔	7K3V	22657	2023-08-24	2020-09-14	1.34	1.44	—	1.4	0.005	0.79	0.0	0.04	21.25	0.00	0.211	2.71	0.00	1.2	98.8	0.0	3.60	0.69	0.78	8.90	1.4	0.005	0.79	0.0	0.05	14.91	0.01	1.971	1.78	0.00	1.2	98.8	0.0	3.72	0.35	0.73	0.83	8.91	38406	4128	72	0	334	2672	0	logfile
✔	8E32	27854	2023-08-13	2022-08-16	2.35	2.96	2.64	2.8	0.006	0.51	0.0	0.03	12.53	0.02	2.005	1.20	0.74	4.6	95.4	0.0	0.03	0.74	0.91	5.35	2.8	0.005	0.63	0.0	0.04	13.70	0.01	1.945	1.79	1.38	5.5	94.5	0.0	-0.67	0.25	0.70	0.90	5.44	115899	1179	11	3016	2	1	41852	logfile
✔	6RRS	4989	2023-08-23	2019-05-20	3.9	4.30	4.41	3.8	0.013	2.10	0.0	0.00	2.04	0.01	2.364	0.79	0.00	3.9	95.3	0.8	-0.85	0.56	0.64	—	3.8	0.004	0.84	0.0	0.00	7.15	0.00	2.195	1.79	0.00	15.0	85.0	0.0	-1.14	2.03	0.80	0.71	—	93060	23220	180	0	0	0	0	logfile
✔	8H3E	34465	2023-08-18	2022-10-08	3.06	3.44	3.40	3.3	0.004	0.51	0.0	0.04	16.69	0.00	1.960	8.20	0.22	5.4	94.6	0.0	-2.27	0.81	0.89	2.90	3.3	0.006	0.70	0.0	0.05	16.95	0.00	2.119	1.79	0.07	6.2	93.8	0.0	-1.99	0.90	0.81	0.89	2.79	24957	3159	6	0	18	0	0	logfile
✔	7UL5	26592	2023-08-09	2022-04-03	3.1	3.32	3.08	3.3	0.004	0.64	0.0	0.04	11.76	0.01	2.404	3.68	0.00	3.1	96.9	0.0	-1.07	0.64	0.85	3.67	3.3	0.003	0.52	0.0	0.04	13.33	0.00	2.337	1.84	0.37	1.7	98.3	0.0	2.87	0.30	0.64	0.86	3.19	2773	371	2	0	0	0	0	logfile
✔	7oJG	12950	2023-08-13	2021-05-14	3.4	3.72	—	3.8	0.025	2.60	0.0	0.07	24.74	0.01	1.340	2.85	0.00	1.5	98.5	0.0	-2.38	0.63	0.83	3.66	3.8	0.003	0.64	0.0	0.05	18.53	0.00	2.247	1.87	0.62	3.1	96.9	0.0	-0.82	0.41	0.58	0.81	3.00	13255	1518	22	0	66	0	0	logfile
✔	8EL7	28223	2023-08-09	2022-09-23	2.8	3.11	2.95	3.1	0.006	0.61	0.0	0.04	13.13	0.00	2.295	2.43	0.00	1.7	98.3	0.0	0.97	0.57	0.80	2.31	3.1	0.002	0.46	0.0	0.04	14.99	0.00	2.314	1.88	1.74	2.2	97.8	0.0	0.68	0.27	0.58	0.81	2.13	4562	604	2	0	0	5	0	logfile
✔	7WZR	32912	2023-08-19	2022-02-19	4.7	4.70	—	4.4	0.008	1.21	3.0	0.06	7.95	0.01	2.197	7.80	0.00	21.6	77.2	1.2	-4.58	0.76	0.65	—	4.4	0.002	0.67	0.0	0.04	4.72	0.00	2.151	1.89	0.00	11.3	88.4	0.3	-0.14	1.59	0.76	0.69	—	27037	5440	4	0	0	0	0	logfile
✔	7QKW	14055	2023-08-09	2021-12-19	2.32	1.74	2.60	2.3	0.010	1.93	1.0	0.10	13.53	0.01	2.534	0.00	0.00	5.4	94.6	0.0	-2.79	0.41	0.81	7.02	2.3	0.002	0.50	0.0	0.05	16.64	0.00	2.420	1.91	2.54	4.4	95.6	0.0	-2.76	1.36	0.41	0.84	5.96	4707	306	6	0	0	0	2439	logfile
✔	7YK5	33887	2023-08-25	2022-07-21	2.0	1.66	—	1.9	0.014	1.49	0.0	0.09	17.33	0.00	2.157	4.91	7.75	4.0	96.0	0.0	-2.45	0.38	0.48	6.60	1.9	0.004	0.74	0.0	0.05	16.52	0.01	2.340	1.95	1.52	2.7	97.3	0.0	0.05	0.46	0.81	0.84	6.66	39948	5064	36	0	8	0	0	logfile
✔	7FGH	31581	2023-08-26	2021-07-27	2.18	2.32	—	2.3	0.009	1.06	0.0	0.06	16.10	0.01	2.118	1.61	1.31	3.8	96.2	0.0	-0.25	0.77	0.80	5.03	2.3	0.002	0.54	0.0	0.04	16.20	0.00	2.275	1.96	0.87	2.1	97.9	0.0	0.51	1.24	0.82	0.88	4.51	44532	5448	36	12	12	1416	0	logfile
✔	7RXB	24727	2023-08-10	2021-08-22	3.07	3.22	—	3.2	0.009	1.15	0.0	0.05	14.60	0.01	2.437	0.72	0.00	6.0	94.0	0.0	-4.88	0.67	0.89	3.48	3.2	0.002	0.53	0.0	0.04	14.48	0.00	2.379	1.98	0.00	5.2	94.8	0.0	-0.20	0.26	0.63	0.88	3.17	8506	1096	4	0	8	0	0	logfile
✔	8E46	27881	2023-08-13	2022-08-17	2.32	2.94	2.69	2.8	0.006	0.41	0.0	0.08	12.41	0.02	2.015	1.38	0.53	5.1	94.8	0.1	-0.35	0.70	0.90	5.69	2.8	0.005	0.65	0.0	0.04	13.80	0.01	1.913	2.00	1.27	5.9	93.8	0.3	-0.56	0.79	0.69	0.90	5.87	115754	1179	11	3015	1	0	41809	logfile

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