Table showing results for June 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6L3T	0825	2021-06-03	2019-10-15	2.34	2.41	2.27	2.4	0.011	1.07	0.0	0.05	16.88	0.01	2.306	1.05	3.61	1.0	99.0	0.0	-3.24	0.68	0.86	4.85	2.4	0.002	0.59	0.0	0.03	16.28	0.00	1.929	2.64	1.41	0.8	99.2	0.0	2.99	3.48	0.67	0.86	4.09	19722	1206	18	0	6	204	9588	logfile
✔	6MRT	9212	2021-06-05	2018-10-15	2.8	2.93	—	2.9	0.008	0.90	0.0	0.05	10.67	0.01	2.260	1.61	0.82	1.1	98.9	0.0	-1.27	0.70	0.84	3.77	2.9	0.003	0.46	0.0	0.03	15.38	0.00	2.229	2.75	1.26	0.4	99.6	0.0	5.51	3.07	0.73	0.86	2.25	26868	3420	12	0	0	0	0	logfile
✔	6L3V	0827	2021-06-03	2019-10-15	2.63	2.90	2.72	2.9	0.010	0.92	0.0	0.04	16.68	0.01	2.218	1.00	5.45	0.5	99.5	0.0	-5.00	0.57	0.85	3.54	2.9	0.003	0.61	0.0	0.03	16.29	0.00	2.184	2.81	1.62	0.5	99.5	0.0	2.29	3.59	0.59	0.87	2.74	19416	1206	12	0	6	0	9528	logfile
✔	7JG7	22313	2021-06-02	2020-07-18	3.5	2.41	3.57	3.4	0.008	1.54	0.0	0.00	6.82	0.01	2.433	0.00	0.00	2.9	96.9	0.1	-0.73	0.63	0.55	—	2.3	0.006	1.19	0.0	0.00	7.16	0.01	2.147	2.85	0.00	15.2	84.7	0.1	-1.74	1.67	0.73	0.72	—	19316	4818	20	0	11	0	0	logfile
✔	6ZGi	11207	2021-06-03	2020-06-18	2.9	3.12	3.02	3.1	0.006	0.76	0.0	0.05	12.43	0.00	2.317	1.64	0.73	4.2	95.7	0.1	-0.93	0.75	0.83	4.10	3.1	0.003	0.57	0.0	0.04	14.55	0.00	2.182	2.85	1.50	3.8	96.1	0.1	-0.41	1.20	0.75	0.85	3.86	26901	3294	33	0	78	0	0	logfile
✔	6SAG	10130	2021-06-05	2019-07-16	2.0	2.11	2.01	2.1	0.004	0.65	0.0	0.04	12.99	0.00	0.351	2.79	0.00	2.6	97.4	0.0	-0.33	0.58	0.86	6.64	2.1	0.003	0.62	0.0	0.04	15.22	0.01	2.044	2.91	1.22	3.2	96.8	0.0	1.50	0.73	0.59	0.88	6.92	54080	6120	240	120	240	2840	0	logfile
✔	6T72	10389	2021-06-03	2019-10-21	3.7	3.79	—	3.8	0.013	1.64	0.0	0.11	14.69	0.02	2.167	4.27	0.00	2.1	97.9	0.0	-2.53	0.76	0.87	2.40	3.7	0.003	0.55	0.0	0.03	14.87	0.00	2.106	2.92	0.17	2.4	97.6	0.0	1.94	1.25	0.77	0.87	1.72	26278	3388	14	0	210	0	0	logfile
✔	7NPS	12518	2021-06-05	2021-02-28	3.81	3.93	3.82	3.9	0.010	1.15	6.0	0.08	11.02	0.01	2.182	1.03	0.00	2.5	97.5	0.0	-1.44	0.82	0.82	2.59	3.9	0.003	0.59	0.0	0.04	13.03	0.00	1.984	3.02	0.03	2.0	98.0	0.0	-0.05	0.71	0.83	0.83	2.28	55350	3732	9	0	0	0	27681	logfile
✔	6oG3	20051	2021-06-01	2019-04-01	4.1	5.37	—	6.5	0.005	1.53	0.0	0.00	0.93	0.00	2.539	0.00	0.00	0.0	99.2	0.8	0.27	0.46	0.48	—	6.0	0.002	0.66	0.0	0.00	4.56	0.00	2.650	3.04	0.00	4.9	95.1	0.0	0.48	2.10	0.66	0.84	—	1215	396	4	0	9	0	0	logfile
✔	6AYG	7020	2021-06-02	2017-09-08	4.65	4.76	—	4.6	0.013	1.56	0.0	0.07	11.75	0.01	2.180	18.15	1.09	7.7	91.9	0.5	-4.34	0.84	0.80	—	4.6	0.002	0.59	0.0	0.04	10.75	0.00	2.280	3.11	0.00	2.6	97.4	0.0	2.50	2.12	0.83	0.78	—	10456	1756	4	0	0	0	0	logfile
✔	7B16	11979	2021-06-03	2020-11-23	3.15	3.24	—	3.2	0.010	0.82	0.0	0.05	14.76	0.01	2.239	4.46	0.00	6.1	93.9	0.0	-1.02	0.73	0.85	3.32	3.2	0.004	0.58	0.0	0.04	16.11	0.00	2.248	3.14	0.00	4.6	95.4	0.0	1.23	0.97	0.73	0.87	2.40	21152	2572	8	0	12	0	0	logfile
✔	6CUD	7620	2021-06-03	2018-03-25	3.3	3.61	—	3.5	0.007	1.16	0.0	0.06	12.67	0.02	2.171	6.98	1.47	4.4	95.5	0.1	-3.04	0.71	0.83	1.93	3.5	0.002	0.57	0.0	0.04	13.73	0.00	2.267	3.15	0.32	3.6	96.3	0.1	2.08	1.94	0.73	0.85	1.56	21028	2816	8	0	12	0	0	logfile
✔	6TSK	10564	2021-06-04	2019-12-20	2.3	2.36	—	2.3	0.012	1.54	24.0	0.11	16.57	0.02	1.535	1.51	2.42	2.9	97.0	0.1	-1.00	0.84	0.94	7.33	2.3	0.003	0.63	0.0	0.05	17.03	0.00	2.001	3.20	1.01	2.4	97.6	0.0	0.44	0.82	0.80	0.91	6.46	33632	4060	12	0	8	964	0	logfile
✔	7NRi	12546	2021-06-03	2021-03-03	3.03	3.49	3.11	3.3	0.007	0.69	2.0	0.05	14.47	0.00	1.984	3.80	0.32	6.2	93.7	0.1	-3.46	0.78	0.84	3.97	3.3	0.002	0.50	0.0	0.04	15.60	0.00	2.035	3.20	0.16	3.4	96.6	0.0	-0.18	0.71	0.77	0.87	3.55	23143	1504	6	0	1	0	11351	logfile
✔	6MRU	9213	2021-06-05	2018-10-15	3.2	3.31	—	3.3	0.005	0.73	0.0	0.04	10.16	0.01	2.297	2.27	0.82	1.4	98.6	0.0	-1.59	0.72	0.83	3.34	3.3	0.003	0.47	0.0	0.03	13.45	0.00	2.200	3.24	0.03	0.6	99.4	0.0	5.43	3.90	0.76	0.86	1.92	29107	3705	13	0	0	0	0	logfile
✔	6UXA	20931	2021-06-02	2019-11-07	4.5	5.05	—	6.0	0.005	0.77	0.0	0.06	4.56	0.00	2.628	0.00	0.00	3.8	96.2	0.0	-2.56	0.71	0.63	—	6.0	0.002	0.63	0.0	0.05	3.30	0.00	2.242	3.25	0.00	2.5	97.5	0.0	2.65	4.60	0.72	0.66	—	10344	2104	8	0	0	0	0	logfile
✔	6E2R	8969	2021-06-08	2018-07-12	2.8	2.92	—	2.9	0.016	0.92	0.0	0.06	14.23	0.01	2.216	2.61	4.65	3.3	96.7	0.0	-3.68	0.72	0.85	5.02	2.9	0.004	0.65	0.0	0.04	15.09	0.00	1.974	3.30	0.99	2.5	97.5	0.0	-1.39	1.30	0.74	0.87	5.13	183180	11340	60	0	0	0	90180	logfile
✔	6VPS	21316	2021-06-01	2020-02-04	2.6	2.62	2.52	2.7	0.011	1.14	10.0	0.13	20.44	0.01	2.501	19.04	0.00	6.9	93.1	0.0	-3.61	0.49	0.89	6.11	2.7	0.003	0.48	0.0	0.03	19.95	0.00	2.357	3.30	1.31	6.9	93.1	0.0	-3.69	1.18	0.46	0.86	6.57	2736	279	9	0	0	0	0	logfile
✔	7o6E	12738	2021-06-04	2021-04-10	2.1	1.78	2.15	1.6	0.017	1.10	0.0	0.07	18.13	0.01	2.110	3.49	0.00	2.3	97.7	0.0	2.10	0.87	0.88	6.02	1.6	0.003	0.47	0.0	0.03	18.11	0.01	2.219	3.33	0.52	1.0	99.0	0.0	4.44	0.29	0.87	0.89	5.32	35304	4248	48	0	0	1392	0	logfile
✔	6QJH	4563	2021-06-01	2019-01-24	3.3	3.70	2.77	3.6	0.012	1.21	3.0	0.10	14.39	0.01	2.673	1.49	1.96	7.0	93.0	0.0	-3.22	0.36	0.83	2.97	3.6	0.005	0.61	0.0	0.05	16.12	0.00	2.300	3.36	0.00	3.5	96.5	0.0	-2.57	1.58	0.30	0.77	2.69	1302	177	3	0	0	0	0	logfile

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