Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7QER	13938	2022-07-04	2021-12-03	2.2	2.66	2.18	2.3	0.011	0.71	0.0	0.05	14.00	0.00	2.117	3.04	2.94	1.6	98.4	0.0	-0.05	0.84	0.88	3.46	2.3	0.003	0.57	0.0	0.04	14.90	0.00	2.228	2.27	2.00	1.0	99.0	0.0	3.45	1.24	0.84	0.89	3.51	19097	2244	36	0	60	305	0	logfile
✔	6SH4	10193	2022-07-03	2019-08-05	4.4	4.48	—	4.3	0.005	1.01	0.0	0.07	5.13	0.00	2.405	2.99	0.00	6.8	92.4	0.8	-2.94	0.72	0.77	—	4.3	0.003	0.76	0.0	0.04	5.13	0.00	2.207	2.29	0.00	8.6	91.1	0.3	-0.62	2.29	0.74	0.83	—	12957	2632	7	0	0	0	0	logfile
✔	7R4T	14316	2022-07-03	2022-02-09	2.75	2.72	2.62	2.8	0.011	1.77	0.0	0.09	11.86	0.01	2.520	0.85	0.00	3.8	96.2	0.0	-2.02	0.42	0.84	4.94	2.8	0.003	0.53	0.0	0.05	15.91	0.00	2.404	2.41	1.01	2.7	97.3	0.0	-1.39	2.29	0.43	0.89	6.27	7074	456	6	0	0	0	3606	logfile
✔	6U68	20662	2022-07-03	2019-08-29	4.5	4.54	—	4.5	0.006	0.90	0.0	0.06	4.27	0.00	2.419	0.52	0.00	2.6	97.3	0.1	-3.82	0.71	0.71	—	4.5	0.002	0.74	0.0	0.05	4.16	0.00	2.318	2.42	0.00	3.8	96.2	0.0	-0.64	1.80	0.77	0.81	—	10489	2133	8	0	0	0	0	logfile
✔	6UFR	20759	2022-07-03	2019-09-24	2.5	2.80	—	2.8	0.012	0.96	0.0	0.07	13.71	0.01	2.209	5.48	0.00	6.6	93.4	0.0	-1.99	0.50	0.87	5.55	2.8	0.004	0.63	0.0	0.06	17.00	0.00	2.402	2.46	2.95	4.8	95.2	0.0	-0.87	0.98	0.53	0.89	5.06	4420	630	20	0	0	90	0	logfile
✔	7KoD	22972	2022-07-04	2020-11-08	1.655	2.30	—	1.9	0.001	0.33	0.0	0.03	8.49	0.00	2.288	0.80	0.00	1.1	98.9	0.0	6.14	0.91	0.91	8.16	2.0	0.005	0.49	0.0	0.04	13.81	0.00	1.858	2.53	0.27	0.6	99.4	0.0	5.26	0.58	0.88	0.94	8.02	68186	4128	48	0	0	1727	32643	logfile
✔	7VD8	31910	2022-07-07	2021-09-06	1.96	1.42	2.01	1.7	0.002	0.54	0.0	0.04	16.17	0.00	2.013	3.17	0.03	2.2	97.8	0.0	5.39	0.75	0.80	7.92	1.7	0.002	0.55	0.0	0.04	16.50	0.00	2.001	2.61	0.05	1.5	98.5	0.0	5.41	0.23	0.72	0.78	8.03	38201	4128	72	0	329	2472	0	logfile
✔	6YNV	10857	2022-07-03	2020-04-14	2.8	3.33	2.74	3.2	0.014	0.90	0.0	0.06	15.71	0.01	2.129	6.07	1.67	6.0	94.0	0.0	-3.24	0.64	0.88	5.38	3.2	0.004	0.55	0.0	0.04	15.81	0.00	2.217	2.67	0.28	5.5	94.5	0.0	0.31	1.16	0.64	0.90	5.15	6724	417	1	0	1	0	3285	logfile
✔	6ZGi	11207	2022-07-05	2020-06-18	2.9	3.12	3.02	3.1	0.006	0.76	0.0	0.05	12.43	0.00	2.317	1.64	0.73	4.2	95.7	0.1	-0.93	0.75	0.83	4.10	3.1	0.003	0.57	0.0	0.04	14.51	0.00	2.122	2.72	1.32	3.9	96.0	0.0	-0.41	1.19	0.75	0.85	3.84	26901	3294	33	0	78	0	0	logfile
✔	6TQF	10550	2022-07-03	2019-12-16	3.5	3.81	—	3.7	0.009	0.96	0.0	0.06	15.62	0.01	2.092	3.00	0.09	5.2	94.8	0.0	-6.53	0.74	0.90	2.73	3.7	0.003	0.62	0.0	0.04	15.73	0.00	1.970	2.72	0.09	3.6	96.4	0.0	-3.61	0.35	0.74	0.90	2.62	10426	1268	4	0	14	0	0	logfile
✔	7A6A	11668	2022-07-05	2020-08-25	1.15	1.13	—	1.2	0.018	1.70	24.0	0.16	14.68	0.01	1.857	4.11	3.03	1.2	98.8	0.0	2.45	0.47	0.61	9.02	1.2	0.003	0.57	0.0	0.04	15.15	0.00	2.188	2.73	1.82	1.8	98.2	0.0	4.61	0.45	0.69	0.82	8.90	41613	4152	72	0	32	4621	0	logfile
✔	6ZB5	11145	2022-07-05	2020-06-07	2.85	2.93	2.86	2.9	0.009	0.76	1.0	0.06	17.24	0.01	1.985	2.88	3.76	7.6	92.4	0.0	-3.22	0.77	0.85	3.59	2.9	0.007	0.92	0.0	0.05	17.78	0.01	2.151	2.75	3.98	6.4	93.6	0.0	-1.38	1.13	0.79	0.87	3.59	24499	3096	9	0	29	0	0	logfile
✔	7RSQ	24677	2022-07-03	2021-08-11	3.8	4.03	3.73	4.1	0.008	0.80	0.0	0.05	12.74	0.00	2.360	4.01	2.88	3.0	97.0	0.0	-0.64	0.63	0.68	1.39	4.2	0.002	0.51	0.0	0.03	15.35	0.00	2.389	2.76	0.00	2.6	97.4	0.0	2.59	1.83	0.63	0.70	1.77	3970	246	1	0	0	0	1958	logfile
✔	7TAN	25777	2022-07-03	2021-12-21	3.0	2.95	—	3.1	0.003	0.47	0.0	0.03	27.32	0.00	2.287	3.25	0.00	2.8	97.2	0.0	2.18	0.82	0.85	2.22	3.1	0.004	0.52	0.0	0.03	27.86	0.00	2.211	2.79	0.47	1.9	98.1	0.0	2.21	0.33	0.84	0.87	1.98	12119	768	12	294	0	0	0	logfile
✔	7DZY	30921	2022-07-04	2021-01-26	3.6	3.83	3.38	3.1	0.020	2.12	0.0	0.00	4.32	0.01	1.980	3.14	0.00	3.7	95.4	0.9	-0.42	0.43	0.27	—	3.3	0.003	0.85	0.0	0.00	5.31	0.00	2.074	2.81	0.00	11.3	88.5	0.2	-2.84	2.17	0.71	0.71	—	18708	4677	9	0	0	0	0	logfile
✔	7T10	25586	2022-07-03	2021-11-30	2.5	2.70	—	2.8	0.005	1.00	0.0	0.06	12.36	0.01	2.235	3.92	0.73	3.0	97.0	0.0	0.62	0.64	0.83	4.77	2.8	0.002	0.57	0.0	0.04	13.98	0.00	2.271	2.81	1.10	2.8	97.2	0.0	1.55	0.91	0.65	0.84	3.75	8429	1146	9	0	0	5	0	logfile
✔	7oSL	13054	2022-07-08	2021-06-09	3.1	2.94	3.08	3.1	0.010	1.26	0.0	0.07	12.14	0.01	2.374	0.44	0.00	1.3	98.7	0.0	-2.09	0.61	0.67	2.20	3.1	0.002	0.53	0.0	0.04	14.71	0.00	2.203	2.82	0.07	2.1	97.9	0.0	1.19	0.75	0.73	0.78	1.81	47885	2935	9	0	0	0	24225	logfile
✔	7TM0	25992	2022-07-05	2022-01-19	3.1	3.24	3.21	3.2	0.009	1.35	0.0	0.08	8.72	0.01	2.264	1.53	0.17	2.4	97.6	0.0	0.62	0.73	0.76	3.91	3.2	0.004	0.65	0.0	0.05	11.94	0.00	2.097	2.83	0.23	2.7	97.3	0.0	0.30	1.30	0.75	0.78	3.63	27963	4401	19	0	52	0	0	logfile
✔	7Q8C	13864	2022-07-04	2021-11-11	2.72	2.78	2.67	2.7	0.005	0.62	0.0	0.05	10.88	0.00	1.953	1.76	0.00	3.0	97.0	0.0	0.25	0.73	0.89	5.04	2.7	0.007	0.81	0.0	0.05	15.32	0.01	1.699	2.86	1.79	3.4	96.6	0.0	-0.02	0.89	0.74	0.91	4.35	14975	1850	15	0	10	360	0	logfile
✔	7RXA	24726	2022-07-03	2021-08-22	3.08	3.22	—	3.3	0.006	1.11	0.0	0.05	15.07	0.01	2.381	1.32	0.00	5.4	94.6	0.0	-4.42	0.67	0.84	2.99	3.3	0.002	0.55	0.0	0.04	13.77	0.00	2.241	2.87	0.14	4.1	95.9	0.0	0.82	0.32	0.67	0.85	2.84	8694	1156	4	0	8	0	0	logfile

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