Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7VD8	31910	2022-04-08	2021-09-06	1.96	1.42	2.01	1.7	0.002	0.54	0.0	0.04	16.17	0.00	2.013	2.67	0.03	2.2	97.8	0.0	5.39	0.75	0.80	7.92	1.7	0.002	0.55	0.0	0.04	16.50	0.00	2.001	2.31	0.05	1.5	98.5	0.0	5.41	0.23	0.72	0.78	8.03	38201	4128	72	0	329	2472	0	logfile
✔	6YNV	10857	2022-04-04	2020-04-14	2.8	3.33	2.74	3.2	0.014	0.90	0.0	0.06	15.71	0.01	2.129	5.63	1.67	6.0	94.0	0.0	-3.24	0.64	0.88	5.38	3.2	0.004	0.55	0.0	0.04	15.81	0.00	2.217	2.37	0.28	5.5	94.5	0.0	0.31	1.16	0.64	0.90	5.15	6724	417	1	0	1	0	3285	logfile
✔	7A6A	11668	2022-04-07	2020-08-25	1.15	1.13	—	1.2	0.018	1.70	24.0	0.16	14.68	0.01	1.857	3.78	3.03	1.2	98.8	0.0	2.45	0.47	0.61	9.02	1.2	0.003	0.57	0.0	0.04	15.15	0.00	2.188	2.37	1.82	1.8	98.2	0.0	4.61	0.45	0.69	0.82	8.90	41613	4152	72	0	32	4621	0	logfile
✔	7MQF	23945	2022-04-06	2021-05-05	2.88	2.74	2.86	2.8	0.006	0.72	0.0	0.06	11.73	0.00	2.175	1.01	0.00	0.5	99.5	0.0	1.24	0.72	0.87	6.16	2.7	0.003	0.48	0.0	0.04	13.44	0.00	2.256	2.39	0.00	1.0	99.0	0.0	1.02	0.44	0.80	0.91	5.71	12288	1608	16	16	0	0	0	logfile
✔	6U68	20662	2022-04-05	2019-08-29	4.5	4.54	—	4.5	0.006	0.90	0.0	0.06	4.27	0.00	2.419	0.52	0.00	2.6	97.3	0.1	-3.82	0.71	0.71	—	4.5	0.002	0.74	0.0	0.05	4.16	0.00	2.318	2.42	0.00	3.8	96.2	0.0	-0.64	1.80	0.77	0.81	—	10489	2133	8	0	0	0	0	logfile
✔	6L3T	0825	2022-04-06	2019-10-15	2.34	2.41	2.27	2.4	0.012	1.03	0.0	0.05	16.76	0.01	2.306	1.05	3.61	1.0	99.0	0.0	-3.24	0.68	0.86	4.85	2.4	0.003	0.60	0.0	0.03	16.29	0.00	1.929	2.44	1.41	1.1	98.9	0.0	2.69	1.60	0.69	0.87	4.48	19722	1206	18	0	6	204	9588	logfile
✔	6UFR	20759	2022-04-04	2019-09-24	2.5	2.80	—	2.8	0.012	0.96	0.0	0.07	13.71	0.01	2.209	5.48	0.00	6.6	93.4	0.0	-1.99	0.50	0.87	5.55	2.8	0.004	0.63	0.0	0.06	17.00	0.00	2.402	2.46	2.95	4.8	95.2	0.0	-0.87	0.98	0.53	0.89	5.06	4420	630	20	0	0	90	0	logfile
✔	7KoD	22972	2022-04-06	2020-11-08	1.655	2.30	—	1.9	0.001	0.33	0.0	0.03	8.49	0.00	2.288	0.80	0.00	1.1	98.9	0.0	6.14	0.91	0.91	8.16	2.0	0.005	0.49	0.0	0.04	13.81	0.00	1.858	2.53	0.27	0.6	99.4	0.0	5.26	0.58	0.88	0.94	8.02	68186	4128	48	0	0	1727	32643	logfile
✔	7QKW	14055	2022-04-04	2021-12-19	2.32	1.74	2.60	2.3	0.010	1.93	1.0	0.10	13.53	0.01	2.534	0.00	0.00	5.4	94.6	0.0	-2.79	0.41	0.81	7.02	2.3	0.002	0.52	0.0	0.05	16.59	0.00	2.445	2.55	1.09	4.8	95.2	0.0	-2.85	1.38	0.41	0.84	5.96	4707	306	6	0	0	0	2439	logfile
✔	6ZB5	11145	2022-04-07	2020-06-07	2.85	2.93	2.86	2.9	0.009	0.76	1.0	0.06	17.24	0.01	1.985	2.81	3.76	7.6	92.4	0.0	-3.22	0.77	0.85	3.59	2.9	0.007	0.92	0.0	0.05	17.78	0.01	2.151	2.59	3.98	6.4	93.6	0.0	-1.38	1.13	0.79	0.87	3.59	24499	3096	9	0	29	0	0	logfile
✔	6L3V	0827	2022-04-06	2019-10-15	2.63	2.90	2.72	2.9	0.011	0.89	0.0	0.04	17.00	0.01	2.218	1.00	5.45	0.5	99.5	0.0	-5.00	0.57	0.85	3.54	2.9	0.002	0.58	0.0	0.03	16.57	0.00	2.198	2.61	1.21	0.5	99.5	0.0	2.37	3.59	0.59	0.87	2.85	19416	1206	12	0	6	0	9528	logfile
✔	6ZGi	11207	2022-04-07	2020-06-18	2.9	3.12	3.02	3.1	0.006	0.76	0.0	0.05	12.43	0.00	2.317	1.64	0.73	4.2	95.7	0.1	-0.93	0.75	0.83	4.10	3.1	0.003	0.57	0.0	0.04	14.51	0.00	2.122	2.62	1.32	3.9	96.0	0.0	-0.41	1.19	0.75	0.85	3.84	26901	3294	33	0	78	0	0	logfile
✔	7K3W	22658	2022-04-09	2020-09-14	1.36	1.48	—	1.5	0.005	0.76	0.0	0.04	14.50	0.00	1.934	3.30	0.00	1.8	98.2	0.0	3.35	0.73	0.80	9.05	1.5	0.003	0.65	0.0	0.04	14.77	0.00	2.038	2.63	0.00	1.8	98.2	0.0	4.21	0.17	0.75	0.82	9.20	39086	4128	72	0	382	2680	0	logfile
✔	7T10	25586	2022-04-04	2021-11-30	2.5	2.70	—	2.8	0.005	1.00	0.0	0.06	12.36	0.01	2.235	3.61	0.73	3.0	97.0	0.0	0.62	0.64	0.83	4.77	2.8	0.002	0.57	0.0	0.04	13.98	0.00	2.271	2.69	1.10	2.8	97.2	0.0	1.55	0.91	0.65	0.84	3.75	8429	1146	9	0	0	5	0	logfile
✔	6WWZ	21950	2022-04-04	2020-05-09	3.34	3.53	—	3.5	0.014	1.77	0.0	0.09	13.13	0.00	2.318	2.07	0.10	4.4	95.6	0.0	-3.33	0.56	0.77	2.93	3.5	0.004	0.66	0.0	0.04	15.30	0.00	2.193	2.70	0.10	3.2	96.8	0.0	0.27	1.07	0.72	0.86	2.63	9450	1211	6	0	0	0	0	logfile
✔	6TQF	10550	2022-04-05	2019-12-16	3.5	3.81	—	3.7	0.009	0.96	0.0	0.06	15.62	0.01	2.092	3.00	0.09	5.2	94.8	0.0	-6.53	0.74	0.90	2.73	3.7	0.003	0.62	0.0	0.04	15.73	0.00	1.970	2.72	0.09	3.6	96.4	0.0	-3.61	0.35	0.74	0.90	2.62	10426	1268	4	0	14	0	0	logfile
✔	7RSQ	24677	2022-04-04	2021-08-11	3.8	4.03	3.73	4.1	0.008	0.80	0.0	0.05	12.74	0.00	2.360	4.01	2.88	3.0	97.0	0.0	-0.64	0.63	0.68	1.39	4.2	0.002	0.51	0.0	0.03	15.35	0.00	2.389	2.76	0.00	2.6	97.4	0.0	2.59	1.83	0.63	0.70	1.77	3970	246	1	0	0	0	1958	logfile
✔	7TM0	25992	2022-04-07	2022-01-19	3.1	3.24	3.21	3.2	0.009	1.35	0.0	0.08	8.72	0.01	2.264	1.47	0.17	2.4	97.6	0.0	0.62	0.73	0.76	3.91	3.2	0.004	0.65	0.0	0.05	11.94	0.00	2.097	2.77	0.23	2.7	97.3	0.0	0.30	1.30	0.75	0.78	3.63	27963	4401	19	0	52	0	0	logfile
✔	6XEU	22150	2022-04-05	2020-06-13	3.2	3.84	—	3.7	0.008	0.82	4.0	0.06	15.45	0.01	2.387	2.63	2.83	11.3	88.7	0.0	-2.88	0.76	0.88	3.94	3.7	0.002	0.58	0.0	0.04	15.83	0.00	2.299	2.78	0.35	4.7	95.3	0.0	0.13	0.36	0.77	0.89	3.04	10544	1312	8	0	16	0	0	logfile
✔	7DZY	30921	2022-04-06	2021-01-26	3.6	3.83	3.38	3.1	0.020	2.12	0.0	0.00	4.32	0.01	1.980	3.14	0.00	3.7	95.4	0.9	-0.42	0.43	0.27	—	3.3	0.003	0.85	0.0	0.00	5.31	0.00	2.074	2.81	0.00	11.3	88.5	0.2	-2.84	2.17	0.71	0.71	—	18708	4677	9	0	0	0	0	logfile

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