Table showing results for September 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6ZGi	11207	2021-09-04	2020-06-18	2.9	3.12	3.02	3.1	0.006	0.76	0.0	0.05	12.43	0.00	2.317	1.64	0.73	4.2	95.7	0.1	-0.93	0.75	0.83	4.10	3.1	0.004	0.60	0.0	0.05	14.51	0.00	2.159	2.38	1.29	4.4	95.6	0.1	-0.48	1.19	0.75	0.85	3.90	26901	3294	33	0	78	0	0	logfile
✔	7K3V	22657	2021-09-06	2020-09-14	1.34	1.44	—	1.4	0.005	0.80	0.0	0.04	14.68	0.00	0.211	2.71	0.00	1.2	98.8	0.0	3.60	0.69	0.78	8.90	1.4	0.005	0.79	0.0	0.04	14.91	0.01	1.992	2.40	0.61	1.2	98.8	0.0	3.81	0.33	0.72	0.82	8.91	38406	4128	72	0	334	2672	0	logfile
✔	6L3V	0827	2021-09-04	2019-10-15	2.63	2.90	2.72	2.9	0.011	0.92	0.0	0.04	17.00	0.01	2.218	1.00	5.45	0.5	99.5	0.0	-5.00	0.57	0.85	3.54	2.9	0.002	0.59	0.0	0.03	16.41	0.00	2.191	2.41	1.52	0.5	99.5	0.0	2.58	3.60	0.59	0.86	2.76	19416	1206	12	0	6	0	9528	logfile
✔	6WWZ	21950	2021-09-02	2020-05-09	3.34	3.53	—	3.5	0.014	1.77	0.0	0.09	13.13	0.00	2.318	2.02	0.10	4.4	95.6	0.0	-3.33	0.56	0.77	2.93	3.5	0.004	0.62	0.0	0.04	15.24	0.00	2.183	2.49	0.39	3.0	97.0	0.0	0.23	1.07	0.72	0.86	2.69	9450	1211	6	0	0	0	0	logfile
✔	7M05	23609	2021-09-03	2021-03-10	2.39	2.66	2.49	2.6	0.013	1.02	0.0	0.06	14.78	0.01	2.064	3.55	0.50	6.9	92.3	0.8	-3.01	0.75	0.81	4.52	2.6	0.003	0.60	0.0	0.05	16.34	0.00	2.057	2.50	0.97	3.0	96.9	0.1	0.43	1.29	0.79	0.84	3.93	57152	3636	12	0	4	0	28188	logfile
✔	6L3T	0825	2021-09-04	2019-10-15	2.34	2.41	2.27	2.4	0.012	1.07	0.0	0.05	16.76	0.01	2.306	1.05	3.61	1.0	99.0	0.0	-3.24	0.68	0.86	4.85	2.4	0.003	0.65	0.0	0.04	16.26	0.00	1.884	2.54	1.31	1.3	98.7	0.0	2.47	3.48	0.68	0.87	4.49	19722	1206	18	0	6	204	9588	logfile
✔	6TQF	10550	2021-09-03	2019-12-16	3.5	3.81	—	3.7	0.009	0.98	0.0	0.06	15.82	0.01	2.092	2.95	0.09	5.2	94.8	0.0	-6.53	0.74	0.90	2.73	3.7	0.003	0.63	0.0	0.04	15.94	0.00	1.991	2.57	0.09	3.8	96.2	0.0	-3.49	0.37	0.74	0.90	2.74	10426	1268	4	0	14	0	0	logfile
✔	6ZB5	11145	2021-09-04	2020-06-07	2.85	2.93	2.86	2.9	0.009	0.76	1.0	0.06	17.24	0.01	1.985	2.77	3.76	7.6	92.4	0.0	-3.22	0.77	0.85	3.59	2.9	0.007	0.81	0.0	0.05	17.67	0.01	2.189	2.69	3.53	5.7	94.3	0.0	-1.41	1.13	0.78	0.87	3.60	24499	3096	9	0	29	0	0	logfile
✔	6WX6	21951	2021-09-04	2020-05-09	2.0	2.10	2.08	2.1	0.006	0.69	0.0	0.04	14.94	0.00	2.277	0.00	0.00	1.2	98.8	0.0	1.60	0.77	0.88	7.70	2.1	0.003	0.52	0.0	0.03	16.24	0.00	2.012	2.81	0.69	1.2	98.8	0.0	4.76	0.53	0.78	0.89	7.38	68332	4128	56	0	8	2420	32664	logfile
✔	6QJM	4564	2021-09-02	2019-01-24	3.3	3.49	1.95	3.4	0.010	1.01	0.0	0.07	8.06	0.01	2.408	6.17	0.00	9.1	90.9	0.0	-2.36	0.38	0.76	3.31	3.5	0.003	0.60	0.0	0.05	13.64	0.00	2.150	2.81	0.00	5.1	94.9	0.0	-2.35	1.60	0.34	0.74	3.21	846	111	3	0	0	0	0	logfile
✔	7BH9	12187	2021-09-02	2021-01-11	2.9	3.58	2.91	3.4	0.007	0.76	0.0	0.05	13.23	0.00	2.021	5.17	0.33	4.9	95.1	0.0	-3.10	0.85	0.88	3.70	3.4	0.004	0.59	0.0	0.04	15.09	0.00	2.173	2.89	0.66	2.1	97.9	0.0	0.45	0.38	0.82	0.86	2.60	5876	730	3	0	4	0	0	logfile
✔	7NPS	12518	2021-09-02	2021-02-28	3.81	3.93	3.82	3.9	0.010	1.15	6.0	0.08	11.02	0.01	2.182	1.03	0.00	2.5	97.5	0.0	-1.44	0.82	0.82	2.59	3.9	0.003	0.60	0.0	0.05	12.94	0.00	1.893	2.93	0.00	1.8	98.2	0.0	0.13	0.72	0.83	0.83	2.24	55350	3732	9	0	0	0	27681	logfile
✔	7A6A	11668	2021-09-05	2020-08-25	1.15	1.13	—	1.2	0.018	1.70	24.0	0.16	14.70	0.01	1.857	3.78	3.03	1.2	98.8	0.0	2.45	0.47	0.61	9.02	1.2	0.002	0.54	0.0	0.04	15.40	0.00	2.271	2.99	1.82	1.8	98.2	0.0	4.91	0.44	0.68	0.80	8.90	41613	4152	72	0	32	4621	0	logfile
✔	5XB1	6714	2021-09-05	2017-03-15	3.0	3.16	2.84	3.1	0.007	0.71	0.0	0.05	10.82	0.00	2.173	4.34	0.00	2.0	98.0	0.0	-6.31	0.80	0.88	4.19	3.1	0.002	0.52	0.0	0.03	18.09	0.00	2.159	3.06	3.24	1.9	98.1	0.0	4.16	0.71	0.78	0.85	3.13	30847	3720	48	0	0	55	0	logfile
✔	6MRT	9212	2021-09-02	2018-10-15	2.8	2.93	—	2.9	0.008	0.90	0.0	0.05	10.67	0.01	2.260	1.61	0.82	1.1	98.9	0.0	-1.27	0.70	0.84	3.77	2.9	0.003	0.49	0.0	0.03	15.39	0.00	2.218	3.12	1.36	0.4	99.6	0.0	5.29	3.08	0.73	0.86	2.53	26868	3420	12	0	0	0	0	logfile
✔	6SAG	10130	2021-09-02	2019-07-16	2.0	2.11	2.01	2.1	0.004	0.65	0.0	0.04	12.99	0.00	0.351	2.79	0.00	2.6	97.4	0.0	-0.33	0.58	0.86	6.64	2.1	0.005	0.69	0.0	0.04	15.26	0.01	2.016	3.20	1.24	2.8	97.2	0.0	1.28	0.73	0.59	0.88	6.95	54080	6120	240	120	240	2840	0	logfile
✔	6MRU	9213	2021-09-03	2018-10-15	3.2	3.31	—	3.3	0.005	0.73	0.0	0.04	10.16	0.01	2.297	2.27	0.82	1.4	98.6	0.0	-1.59	0.72	0.83	3.34	3.3	0.003	0.48	0.0	0.03	13.33	0.00	2.202	3.21	0.06	1.2	98.8	0.0	5.39	3.90	0.76	0.86	1.88	29107	3705	13	0	0	0	0	logfile
✔	6PXM	20521	2021-09-05	2019-07-26	2.1	2.33	2.32	2.4	0.008	0.71	0.0	0.04	16.03	0.00	2.392	1.61	0.00	0.6	99.4	0.0	-3.44	0.79	0.89	5.35	2.3	0.002	0.43	0.0	0.03	17.65	0.00	2.202	3.26	0.09	1.8	98.2	0.0	5.35	1.49	0.78	0.89	3.87	32736	4080	24	0	0	0	0	logfile
✔	7o6E	12738	2021-09-05	2021-04-10	2.1	1.78	2.15	1.6	0.017	1.10	0.0	0.07	18.13	0.01	2.110	3.49	0.00	2.3	97.7	0.0	2.10	0.87	0.88	6.02	1.6	0.004	0.49	0.0	0.03	18.22	0.01	2.202	3.30	0.69	1.0	99.0	0.0	4.35	0.28	0.88	0.89	5.30	35304	4248	48	0	0	1392	0	logfile
✔	6U9W	20703	2021-09-05	2019-09-09	3.3	3.46	—	3.5	0.011	1.02	0.0	0.08	15.04	0.00	1.975	2.65	0.70	3.7	96.3	0.0	-2.76	0.70	0.81	4.05	3.4	0.003	0.54	0.0	0.04	15.87	0.00	2.095	3.37	0.07	3.4	96.6	0.0	-0.12	1.65	0.73	0.84	3.55	26919	1686	6	3	42	0	12885	logfile

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