Table showing results for October 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7JLX	22383	2021-10-03	2020-07-30	4.6	3.86	—	3.7	0.001	0.42	0.0	0.04	3.80	0.00	2.240	2.96	0.00	6.7	93.3	0.0	1.23	0.54	0.51	—	3.8	0.004	0.83	0.0	0.04	7.84	0.00	2.303	8.24	0.00	17.7	82.3	0.0	-3.14	2.43	0.49	0.54	—	3288	664	4	0	0	0	0	logfile
✔	6DJP	7939	2021-10-03	2018-05-25	4.8	5.02	—	4.8	0.011	2.00	0.0	0.08	5.34	0.01	2.368	0.36	0.00	4.6	95.4	0.0	-0.74	0.76	0.65	—	4.8	0.005	1.05	0.0	0.05	7.90	0.01	2.194	13.78	0.00	21.2	78.8	0.0	-3.90	1.29	0.82	0.76	—	7307	1393	8	0	23	0	0	logfile
✔	6oDJ	20021	2021-10-05	2019-03-26	3.5	3.75	—	3.7	0.009	1.50	0.0	0.07	11.32	0.01	2.438	2.03	0.00	0.0	0.0	0.0	—	0.81	0.81	—	3.6	0.012	1.74	0.0	0.06	7.98	0.00	2.121	11.49	0.00	0.0	0.0	0.0	—	0.66	0.82	0.83	—	25415	0	17	0	5083	0	0	logfile
✔	6PZi	20535	2021-10-03	2019-07-31	4.5	4.80	—	4.4	0.005	1.13	0.0	0.05	7.87	0.01	2.253	2.60	0.00	6.3	93.7	0.0	-3.83	0.67	0.80	—	4.4	0.003	0.64	0.0	0.04	8.04	0.00	2.158	5.51	0.00	4.0	96.0	0.0	2.15	0.62	0.68	0.83	—	7985	1412	1	0	1	0	0	logfile
✔	6MZJ	9303	2021-10-04	2018-11-05	4.8	5.06	—	4.4	0.014	1.51	0.0	0.08	8.06	0.00	2.352	0.86	2.65	3.2	96.6	0.1	-0.18	0.70	0.72	—	4.5	0.007	0.94	0.0	0.05	8.11	0.01	2.158	10.73	0.00	14.2	85.7	0.1	-2.39	2.30	0.77	0.82	—	12653	2088	10	0	149	0	0	logfile
✔	6Q0J	20550	2021-10-03	2019-08-01	4.9	4.69	—	4.1	0.012	1.53	3.0	0.09	8.19	0.00	2.229	2.10	0.00	5.4	93.3	1.3	-2.84	0.74	0.63	—	4.2	0.003	0.69	0.0	0.04	8.58	0.00	1.931	8.75	0.00	8.8	90.8	0.4	-0.01	2.04	0.85	0.80	—	8213	1633	8	0	6	0	0	logfile
✔	7A95	11685	2021-10-06	2020-09-01	4.3	4.83	4.39	4.3	0.003	0.47	2.0	0.04	5.77	0.00	2.226	3.48	0.90	11.0	89.0	0.0	-4.57	0.87	0.78	—	4.4	0.002	0.61	0.0	0.04	8.97	0.00	2.169	8.08	0.00	3.7	96.3	0.0	-0.71	1.79	0.89	0.83	—	29887	3794	4	0	0	0	0	logfile
✔	6oR5	9032	2021-10-03	2019-04-29	4.0	4.23	—	3.9	0.006	0.93	0.0	0.05	11.50	0.00	2.245	4.84	0.00	17.3	82.4	0.3	-5.53	0.76	0.79	—	3.9	0.002	0.59	0.0	0.04	9.02	0.00	2.144	4.78	0.00	13.4	86.6	0.0	-1.26	1.35	0.78	0.79	—	10364	2058	1	0	5	0	0	logfile
✔	6UVS	20915	2021-10-04	2019-11-04	4.2	4.33	—	4.2	0.010	1.17	0.0	0.06	9.04	0.01	2.148	1.50	0.00	16.0	84.0	0.0	-4.91	0.68	0.79	—	4.2	0.003	0.64	0.0	0.04	9.05	0.01	1.916	1.90	0.00	9.5	90.5	0.0	2.06	1.42	0.73	0.85	—	17040	1920	12	0	0	0	5976	logfile
✔	7EU8	31309	2021-10-04	2021-05-16	4.07	4.11	—	3.6	0.002	0.41	0.0	0.04	8.07	0.00	2.206	3.13	3.51	2.0	97.9	0.1	1.10	0.75	0.61	—	3.4	0.009	0.91	1.0	0.05	9.13	0.00	2.103	9.33	0.00	4.1	95.7	0.2	-0.38	1.44	0.79	0.70	—	18670	3010	8	0	8	0	0	logfile
✔	7A96	11686	2021-10-06	2020-09-01	4.8	5.70	4.94	4.9	0.003	0.49	1.0	0.04	5.85	0.00	2.236	3.88	0.82	10.8	89.2	0.0	-4.46	0.88	0.77	—	4.9	0.010	0.71	0.0	0.04	9.19	0.00	2.003	17.16	0.00	5.1	94.9	0.0	-0.98	1.46	0.89	0.84	—	29811	3783	4	0	0	0	0	logfile
✔	7JW0	22512	2021-10-05	2020-08-24	4.3	4.63	4.41	4.4	0.010	1.51	6.0	0.09	8.08	0.01	2.527	0.37	0.00	2.3	97.5	0.1	1.05	0.81	0.71	—	4.4	0.003	0.63	0.0	0.05	9.45	0.00	2.170	4.89	0.00	2.6	97.4	0.0	0.46	0.79	0.85	0.79	—	26251	4314	27	0	69	0	0	logfile
✔	6EZo	4162	2021-10-04	2017-11-16	4.1	4.20	4.05	4.2	0.008	1.36	4.0	0.15	10.36	0.01	1.569	8.65	3.41	18.5	80.8	0.8	-5.42	0.78	0.79	—	4.1	0.008	0.98	1.0	0.05	9.60	0.00	2.134	5.32	0.00	17.9	82.0	0.1	-2.99	0.49	0.77	0.77	—	18758	3367	11	0	1	0	0	logfile
✔	6PZB	20533	2021-10-03	2019-07-31	4.55	4.69	—	4.5	0.009	1.24	0.0	0.06	8.37	0.01	2.231	3.11	0.00	5.9	94.1	0.0	-3.87	0.62	0.76	—	4.5	0.006	1.09	0.0	0.04	9.65	0.00	2.012	7.50	0.00	6.1	93.9	0.0	1.20	0.65	0.64	0.78	—	7747	1357	1	0	0	0	0	logfile
✔	5LiJ	4054	2021-10-03	2016-07-14	4.2	3.63	—	4.2	0.009	2.92	4.0	0.17	15.82	0.01	2.249	22.98	0.00	10.7	89.3	0.0	-6.36	0.85	0.76	—	3.8	0.004	1.11	0.0	0.04	9.65	0.00	2.219	12.48	0.00	30.7	69.3	0.0	-5.42	1.52	0.86	0.78	—	761	152	1	0	0	0	0	logfile
✔	6X34	22017	2021-10-07	2020-05-21	4.7	6.14	4.99	4.8	0.001	0.41	0.0	0.03	9.38	0.00	2.258	3.73	0.61	1.6	98.4	0.0	-2.99	0.74	0.66	—	4.8	0.003	0.66	0.0	0.04	9.74	0.00	2.039	14.09	0.00	4.8	95.2	0.0	0.36	1.03	0.80	0.80	—	97888	13956	12	0	1320	0	0	logfile
✔	7A97	11687	2021-10-06	2020-09-01	4.4	5.14	4.59	4.5	0.002	0.48	1.0	0.04	5.51	0.00	2.074	4.84	0.26	10.3	89.7	0.0	-4.43	0.88	0.78	—	4.5	0.006	0.81	0.0	0.04	9.76	0.00	2.037	22.81	0.00	6.1	93.9	0.0	-1.77	2.65	0.90	0.84	—	34626	4373	5	0	0	0	0	logfile
✔	5Y81	6816	2021-10-06	2017-08-18	4.7	4.77	—	4.6	0.012	1.24	3.0	0.06	11.53	0.01	1.581	39.93	14.19	15.5	79.2	5.3	-5.73	0.66	0.69	—	4.6	0.003	0.72	0.0	0.04	9.77	0.00	2.173	9.69	0.19	8.6	90.4	1.0	1.23	0.96	0.70	0.73	—	25723	4095	8	0	360	0	0	logfile
✔	6K9L	9950	2021-10-06	2019-06-16	4.27	4.50	—	4.2	0.001	0.49	0.0	0.04	9.31	0.00	2.240	4.75	4.95	4.6	95.4	0.0	-3.11	0.84	0.71	—	4.2	0.002	0.67	0.0	0.04	9.83	0.00	2.138	11.84	0.07	7.2	92.8	0.0	0.83	1.81	0.85	0.75	—	30601	5103	2	0	0	0	0	logfile
✔	6PKW	20368	2021-10-05	2019-06-30	4.5	4.77	—	4.4	0.007	0.94	0.0	0.05	9.19	0.01	2.239	4.06	0.00	5.8	94.2	0.0	-3.48	0.66	0.78	—	4.4	0.002	0.56	0.0	0.04	9.88	0.00	2.141	6.21	0.00	4.0	96.0	0.0	2.17	1.67	0.67	0.79	—	26262	4056	4	0	88	0	0	logfile

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