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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6QPi | 4614 | 2023-04-19 | 2019-02-14 | 3.3 | 3.37 | 2.73 | 3.4 | 0.005 | 0.70 | 0.0 | 0.04 | 6.59 | 0.01 | 2.432 | 2.09 | 0.00 | 1.4 | 98.6 | 0.0 | -3.02 | 0.39 | 0.62 | — | 3.3 | 0.003 | 0.53 | 0.0 | 0.04 | 5.28 | 0.00 | 2.448 | 1.19 | 0.00 | 2.6 | 97.4 | 0.0 | 1.11 | 0.59 | 0.41 | 0.64 | — | 2288 | 462 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZD0 | 11172 | 2023-04-20 | 2020-06-13 | 4.6 | 4.62 | 2.80 | 3.7 | 0.004 | 0.91 | 0.0 | 0.05 | 7.55 | 0.00 | 2.207 | 10.05 | 0.00 | 10.1 | 89.8 | 0.1 | -4.73 | 0.59 | 0.58 | — | 4.5 | 0.003 | 0.78 | 0.0 | 0.04 | 5.38 | 0.00 | 2.341 | 5.89 | 0.00 | 15.0 | 84.6 | 0.4 | -4.68 | 2.32 | 0.61 | 0.58 | — | 7962 | 1611 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6CoZ | 7545 | 2023-04-19 | 2018-03-13 | 3.36 | 4.78 | — | 4.7 | 0.009 | 1.71 | 0.0 | 0.07 | 5.63 | 0.01 | 2.541 | 0.00 | 0.00 | 3.2 | 96.2 | 0.6 | -2.49 | 0.78 | 0.68 | — | 4.4 | 0.003 | 0.85 | 0.0 | 0.04 | 5.41 | 0.00 | 2.334 | 6.19 | 0.00 | 9.6 | 90.4 | 0.0 | -1.73 | 1.59 | 0.82 | 0.77 | — | 1586 | 320 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6X64 | 22069 | 2023-04-23 | 2020-05-27 | 3.7 | 4.01 | — | 3.7 | 0.008 | 1.34 | 0.0 | 0.05 | 9.32 | 0.01 | 2.584 | 0.78 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.68 | 0.84 | — | 3.7 | 0.009 | 1.23 | 0.0 | 0.05 | 5.42 | 0.00 | 2.111 | 10.35 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.35 | 0.69 | 0.86 | — | 15840 | 0 | 36 | 0 | 3168 | 0 | 0 | logfile |
✔ | 7JG8 | 22314 | 2023-04-25 | 2020-07-18 | 3.3 | 2.35 | 3.37 | 3.3 | 0.009 | 1.50 | 0.0 | 0.20 | 7.20 | 0.01 | 2.424 | 0.51 | 0.00 | 3.2 | 96.6 | 0.2 | -1.30 | 0.62 | 0.55 | — | 2.2 | 0.003 | 0.83 | 0.0 | 0.08 | 5.44 | 0.00 | 2.294 | 0.43 | 0.00 | 8.9 | 91.0 | 0.1 | -0.55 | 1.25 | 0.72 | 0.71 | — | 19573 | 4827 | 26 | 0 | 7 | 0 | 0 | logfile |
✔ | 4UQ8 | 2676 | 2023-04-28 | 2014-06-21 | 4.95 | 5.05 | 4.64 | 4.9 | 0.012 | 2.07 | 23.0 | 1.38 | 6.71 | 0.01 | 1.032 | 64.12 | 25.00 | 0.0 | 0.0 | 0.0 | — | 0.57 | 0.75 | — | 4.9 | 0.013 | 2.54 | 0.0 | 0.41 | 5.47 | 0.00 | 2.110 | 23.19 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.11 | 0.61 | 0.83 | — | 28647 | 33 | 54 | 0 | 5686 | 0 | 0 | logfile |
✔ | 7TKM | 25974 | 2023-04-25 | 2022-01-17 | 4.5 | 7.58 | 4.88 | 4.3 | 0.019 | 2.22 | 0.0 | 0.00 | 6.78 | 0.01 | 2.385 | 0.12 | 0.00 | 4.3 | 94.2 | 1.5 | -0.44 | 0.59 | 0.59 | — | 4.3 | 0.004 | 0.82 | 0.0 | 0.00 | 5.62 | 0.00 | 2.105 | 12.83 | 0.00 | 9.6 | 90.0 | 0.3 | -0.78 | 1.55 | 0.82 | 0.81 | — | 20227 | 5056 | 27 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TKP | 25977 | 2023-04-25 | 2022-01-17 | 4.6 | 7.57 | 4.97 | 4.4 | 0.019 | 2.20 | 0.0 | 0.00 | 6.68 | 0.01 | 2.352 | 0.12 | 0.00 | 4.2 | 94.5 | 1.3 | -0.50 | 0.60 | 0.63 | — | 4.4 | 0.004 | 0.83 | 0.0 | 0.00 | 5.67 | 0.00 | 2.069 | 13.64 | 0.00 | 9.3 | 90.5 | 0.2 | -0.09 | 0.76 | 0.78 | 0.81 | — | 20228 | 5056 | 27 | 0 | 0 | 0 | 0 | logfile |
✔ | 6YW7 | 10960 | 2023-04-20 | 2020-04-29 | 4.5 | 5.21 | — | 4.7 | 0.021 | 3.50 | 0.0 | 0.09 | 6.70 | 0.01 | 2.034 | 2.17 | 0.00 | 4.5 | 94.7 | 0.9 | -1.45 | 0.57 | 0.32 | — | 4.6 | 0.003 | 1.01 | 0.0 | 0.02 | 5.70 | 0.00 | 2.420 | 14.13 | 0.00 | 13.2 | 86.6 | 0.2 | -3.90 | 6.17 | 0.81 | 0.75 | — | 5426 | 1788 | 9 | 0 | 2 | 0 | 0 | logfile |
✔ | 5N8Y | 3602 | 2023-04-26 | 2017-02-24 | 4.7 | 4.76 | — | 4.7 | 0.017 | 2.39 | 6.0 | 0.08 | 7.59 | 0.01 | 0.788 | 16.57 | 0.00 | 4.2 | 94.4 | 1.4 | -1.65 | 0.65 | 0.64 | — | 4.7 | 0.003 | 0.79 | 0.0 | 0.04 | 5.73 | 0.00 | 2.234 | 3.43 | 0.00 | 9.5 | 90.4 | 0.0 | -1.95 | 3.82 | 0.74 | 0.79 | — | 23514 | 4752 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TKo | 25976 | 2023-04-25 | 2022-01-17 | 4.8 | 7.71 | 5.39 | 4.4 | 0.019 | 2.23 | 0.0 | 0.00 | 6.74 | 0.01 | 2.314 | 0.12 | 0.00 | 4.8 | 93.9 | 1.4 | -0.54 | 0.62 | 0.65 | — | 4.4 | 0.004 | 0.84 | 0.0 | 0.00 | 5.80 | 0.00 | 2.139 | 12.52 | 0.00 | 10.1 | 89.6 | 0.2 | -0.46 | 0.84 | 0.84 | 0.82 | — | 20229 | 5056 | 27 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JG6 | 22312 | 2023-04-25 | 2020-07-18 | 3.7 | 2.39 | 3.79 | 2.2 | 0.008 | 1.40 | 0.0 | 0.00 | 6.55 | 0.01 | 2.433 | 0.00 | 0.00 | 2.9 | 97.0 | 0.1 | -0.59 | 0.62 | 0.54 | — | 2.3 | 0.004 | 0.90 | 0.0 | 0.00 | 5.83 | 0.00 | 2.226 | 1.17 | 0.00 | 11.4 | 88.6 | 0.0 | -0.80 | 1.65 | 0.71 | 0.69 | — | 19320 | 4819 | 20 | 0 | 11 | 0 | 0 | logfile |
✔ | 7KPW | 22990 | 2023-04-20 | 2020-11-12 | 4.9 | 5.04 | 4.74 | 4.9 | 0.009 | 1.54 | 4.0 | 0.10 | 1.89 | 0.01 | 2.279 | 3.61 | 0.00 | 3.9 | 94.9 | 1.2 | 4.09 | 0.75 | 0.67 | — | 4.9 | 0.003 | 0.73 | 0.0 | 0.04 | 5.85 | 0.00 | 2.148 | 2.79 | 0.00 | 11.5 | 87.9 | 0.6 | -0.50 | 2.04 | 0.82 | 0.82 | — | 4313 | 865 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8G0C | 29653 | 2023-04-25 | 2023-01-31 | 2.8 | 3.69 | 2.84 | 2.8 | 0.005 | 0.85 | 0.0 | 0.17 | 6.80 | 0.00 | 1.814 | 0.39 | 0.00 | 2.6 | 97.3 | 0.0 | 0.98 | 0.69 | 0.67 | — | 2.8 | 0.006 | 0.79 | 0.0 | 0.07 | 5.95 | 0.00 | 1.778 | 2.08 | 0.00 | 9.1 | 90.9 | 0.0 | 0.66 | 1.21 | 0.79 | 0.80 | — | 19874 | 4860 | 30 | 0 | 16 | 0 | 0 | logfile |
✔ | 5VCA | 8659 | 2023-04-23 | 2017-03-31 | 4.8 | 6.04 | — | 5.9 | 0.021 | 2.64 | 50.0 | 0.15 | 5.91 | 0.01 | 1.097 | 2.19 | 0.00 | 6.9 | 90.0 | 3.1 | -4.41 | 0.73 | 0.70 | — | 5.8 | 0.004 | 0.74 | 0.0 | 0.04 | 6.04 | 0.00 | 2.096 | 8.58 | 0.00 | 15.1 | 84.8 | 0.1 | -2.22 | 2.93 | 0.76 | 0.67 | — | 16080 | 3264 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7BZY | 30263 | 2023-04-20 | 2020-04-29 | 3.7 | 5.07 | 3.67 | 2.9 | 0.005 | 1.03 | 0.0 | 0.05 | 7.60 | 0.00 | 2.175 | 11.89 | 0.00 | 15.0 | 84.6 | 0.3 | -5.26 | 0.62 | 0.47 | — | 3.4 | 0.003 | 0.82 | 0.0 | 0.05 | 6.08 | 0.00 | 2.106 | 13.54 | 0.00 | 14.3 | 85.7 | 0.0 | -3.30 | 1.23 | 0.85 | 0.74 | — | 6169 | 1260 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PWC | 20505 | 2023-04-20 | 2019-07-22 | 4.9 | 5.55 | — | 4.5 | 0.003 | 0.67 | 0.0 | 0.05 | 4.68 | 0.01 | 2.345 | 2.19 | 0.00 | 1.3 | 98.7 | 0.0 | -0.09 | 0.61 | 0.67 | — | 4.6 | 0.004 | 0.75 | 0.0 | 0.04 | 6.37 | 0.00 | 2.094 | 19.59 | 0.00 | 7.2 | 92.8 | 0.0 | -0.38 | 1.57 | 0.61 | 0.59 | — | 5879 | 1055 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TNG | 10532 | 2023-04-20 | 2019-12-07 | 4.1 | 4.25 | 3.91 | 4.0 | 0.008 | 1.39 | 0.0 | 0.00 | 8.74 | 0.01 | 2.183 | 11.35 | 0.00 | 18.9 | 80.2 | 0.8 | -5.16 | 0.75 | 0.70 | — | 4.0 | 0.004 | 0.85 | 0.0 | 0.00 | 6.39 | 0.00 | 2.200 | 10.87 | 0.00 | 22.8 | 77.1 | 0.1 | -3.08 | 0.35 | 0.76 | 0.72 | — | 8240 | 2060 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8G0D | 29654 | 2023-04-25 | 2023-01-31 | 2.9 | 3.84 | 3.02 | 2.9 | 0.005 | 0.87 | 0.0 | 0.18 | 6.79 | 0.00 | 1.844 | 0.67 | 0.00 | 2.6 | 97.3 | 0.0 | 0.74 | 0.68 | 0.65 | — | 2.9 | 0.004 | 0.76 | 0.0 | 0.08 | 6.41 | 0.00 | 1.793 | 2.47 | 0.00 | 7.3 | 92.7 | 0.0 | 0.44 | 1.63 | 0.80 | 0.81 | — | 19874 | 4860 | 30 | 0 | 16 | 0 | 0 | logfile |
✔ | 7MJQ | 23882 | 2023-04-23 | 2021-04-20 | 4.2 | 4.29 | — | 4.2 | 0.009 | 1.55 | 0.0 | 0.15 | 6.42 | 0.01 | 1.552 | 6.01 | 0.00 | 9.4 | 90.6 | 0.0 | -1.25 | 0.52 | 0.66 | — | 4.2 | 0.003 | 0.76 | 0.0 | 0.05 | 6.43 | 0.00 | 2.169 | 2.39 | 0.00 | 11.9 | 88.1 | 0.0 | -2.25 | 1.83 | 0.59 | 0.75 | — | 14976 | 2982 | 13 | 0 | 10 | 0 | 0 | logfile |