Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6oLL	20116	2022-12-14	2019-04-16	4.1	4.59	—	4.4	0.004	1.05	0.0	0.06	6.94	0.01	2.400	0.40	0.00	2.0	97.8	0.2	-0.51	0.67	0.58	—	4.4	0.004	0.78	0.0	0.04	5.43	0.00	2.174	5.73	0.00	13.1	86.9	0.0	-2.32	2.07	0.74	0.68	—	10426	2114	6	0	0	0	0	logfile
✔	6oLM	20117	2022-12-14	2019-04-16	4.4	5.29	—	4.3	0.012	1.28	0.0	0.06	6.94	0.01	2.397	0.92	0.00	2.0	98.0	0.0	-0.33	0.89	0.79	—	4.3	0.003	0.66	0.0	0.04	5.44	0.00	2.217	8.78	0.00	6.2	93.8	0.0	-0.92	1.58	0.91	0.83	—	10602	2112	12	0	6	0	0	logfile
✔	7TKP	25977	2022-12-14	2022-01-17	4.6	7.57	4.97	4.4	0.019	2.20	0.0	0.00	6.68	0.01	2.352	0.12	0.00	4.2	94.5	1.3	-0.50	0.60	0.63	—	4.4	0.004	0.83	0.0	0.00	5.46	0.00	2.080	13.25	0.00	10.0	89.8	0.2	0.34	0.82	0.82	0.84	—	20228	5056	27	0	0	0	0	logfile
✔	7JG8	22314	2022-12-14	2020-07-18	3.3	2.35	3.38	3.3	0.009	1.50	0.0	0.20	7.20	0.01	2.424	0.51	0.00	3.2	96.6	0.2	-1.30	0.62	0.55	—	3.4	0.003	0.83	0.0	0.08	5.47	0.00	2.289	1.81	0.00	7.8	92.1	0.1	-1.42	1.28	0.72	0.70	—	19573	4827	26	0	7	0	0	logfile
✔	4UQ8	2676	2022-12-16	2014-06-21	4.95	5.05	4.64	4.9	0.012	2.07	23.0	1.38	6.71	0.01	1.032	67.37	25.00	0.0	0.0	0.0	—	0.57	0.75	—	4.9	0.013	2.54	0.0	0.41	5.50	0.00	2.103	29.65	0.00	0.0	0.0	0.0	—	2.11	0.61	0.83	—	28647	33	54	0	5686	0	0	logfile
✔	7BZY	30263	2022-12-11	2020-04-29	3.7	5.07	3.67	2.9	0.005	1.03	0.0	0.05	7.60	0.00	2.175	11.89	0.00	15.0	84.6	0.3	-5.26	0.62	0.47	—	3.4	0.003	0.80	0.0	0.05	5.52	0.00	2.116	12.77	0.00	14.4	85.6	0.0	-2.69	1.26	0.85	0.74	—	6169	1260	3	0	0	0	0	logfile
✔	7TJY	25946	2022-12-14	2022-01-17	3.8	4.84	3.78	3.6	0.020	2.29	0.0	0.00	6.75	0.01	2.333	0.12	0.00	4.3	94.3	1.5	-0.54	0.59	0.68	—	3.7	0.006	0.89	0.0	0.00	5.53	0.00	2.131	6.70	0.00	11.9	87.8	0.3	-0.26	1.48	0.84	0.80	—	20228	5056	27	0	0	0	0	logfile
✔	7TJZ	25947	2022-12-14	2022-01-17	4.4	7.00	4.54	4.2	0.019	2.21	0.0	0.00	6.67	0.01	2.384	0.19	0.00	4.2	94.2	1.6	-0.41	0.58	0.63	—	4.3	0.012	0.93	0.0	0.00	5.55	0.00	2.081	10.56	0.00	10.4	89.3	0.3	0.17	0.73	0.79	0.83	—	20228	5056	27	0	0	0	0	logfile
✔	7WKK	32566	2022-12-16	2022-01-10	4.2	4.30	—	3.9	0.006	0.63	0.0	0.04	4.94	0.00	2.138	2.83	0.00	4.7	95.2	0.1	-2.36	0.46	0.60	—	3.8	0.005	0.77	0.0	0.04	5.57	0.00	2.116	4.48	0.00	9.6	90.3	0.0	-0.89	0.63	0.52	0.68	—	92821	18728	30	0	0	0	0	logfile
✔	5VLZ	8709	2022-12-17	2017-04-26	4.4	4.55	—	4.4	0.006	0.89	0.0	0.00	5.88	0.00	2.272	2.04	0.00	6.1	93.9	0.0	-1.92	0.80	0.66	—	4.4	0.003	0.81	0.0	0.00	5.63	0.00	2.281	1.18	0.00	6.0	94.0	0.0	-1.57	1.65	0.83	0.78	—	96897	24179	181	0	0	0	0	logfile
✔	7Z8K	14555	2022-12-13	2022-03-17	4.37	3.98	4.34	3.5	0.003	0.62	0.0	0.04	4.76	0.00	2.256	0.67	0.00	2.0	98.0	0.0	1.56	0.61	0.65	—	3.5	0.004	0.70	0.0	0.04	5.64	0.00	2.154	3.64	0.00	9.5	90.5	0.0	-0.41	1.00	0.65	0.76	—	14474	2918	9	0	0	0	0	logfile
✔	7MJP	23881	2022-12-13	2021-04-20	4.2	4.40	—	4.3	0.007	1.11	0.0	0.07	7.09	0.01	1.477	2.91	0.00	9.1	90.9	0.0	-1.16	0.51	0.65	—	4.4	0.002	0.62	0.0	0.05	5.76	0.00	2.279	1.26	0.00	9.8	90.2	0.0	-0.62	0.43	0.57	0.70	—	14163	2818	10	0	8	0	0	logfile
✔	5N8Y	3602	2022-12-15	2017-02-24	4.7	4.76	—	4.7	0.017	2.39	6.0	0.08	7.59	0.01	0.788	16.57	0.00	4.2	94.4	1.4	-1.65	0.65	0.64	—	4.7	0.003	0.80	0.0	0.04	5.88	0.00	2.247	3.81	0.00	9.7	90.2	0.0	-2.16	3.82	0.74	0.79	—	23514	4752	24	0	0	0	0	logfile
✔	7JG6	22312	2022-12-14	2020-07-18	3.7	2.39	3.79	2.2	0.008	1.40	0.0	0.00	6.55	0.01	2.433	0.00	0.00	2.9	97.0	0.1	-0.59	0.62	0.54	—	2.3	0.003	0.91	0.0	0.00	5.94	0.00	2.230	1.09	0.00	10.6	89.3	0.1	-1.07	1.66	0.70	0.68	—	19320	4819	20	0	11	0	0	logfile
✔	6DJP	7939	2022-12-11	2018-05-25	4.8	5.02	—	4.8	0.011	2.00	0.0	0.08	5.34	0.01	2.368	0.45	0.00	4.6	95.4	0.0	-0.74	0.76	0.65	—	4.8	0.003	0.86	0.0	0.05	5.94	0.00	2.257	6.66	0.00	10.3	89.7	0.0	-2.64	1.07	0.81	0.74	—	7307	1393	16	0	23	0	0	logfile
✔	7TKH	25969	2022-12-14	2022-01-17	4.4	7.29	4.45	4.2	0.019	2.19	0.0	0.00	6.81	0.01	2.385	0.08	0.00	3.9	94.7	1.4	-0.35	0.59	0.62	—	4.2	0.013	1.06	0.0	0.00	5.97	0.00	2.028	15.64	0.00	10.8	88.9	0.2	-0.13	1.65	0.83	0.84	—	20228	5056	27	0	0	0	0	logfile
✔	6oEF	20020	2022-12-22	2019-03-27	3.8	3.98	—	3.8	0.007	1.67	0.0	0.07	11.76	0.01	2.376	3.96	0.00	0.0	0.0	0.0	—	0.47	0.78	—	3.8	0.006	1.21	0.0	0.05	6.00	0.00	2.198	8.14	0.00	0.0	0.0	0.0	—	0.58	0.49	0.80	—	51240	0	14	0	10248	0	0	logfile
✔	6PWC	20505	2022-12-11	2019-07-22	4.9	5.55	—	4.5	0.003	0.67	0.0	0.05	4.68	0.01	2.345	2.19	0.00	1.3	98.7	0.0	-0.09	0.61	0.67	—	4.6	0.003	0.65	0.0	0.04	6.10	0.00	2.135	11.73	0.00	5.6	94.4	0.0	0.10	1.53	0.61	0.58	—	5879	1055	5	0	0	0	0	logfile
✔	7DZW	30915	2022-12-13	2021-01-26	3.45	4.19	3.55	3.3	0.019	2.27	0.0	0.00	4.81	0.01	2.240	2.28	0.00	5.1	93.3	1.6	-1.27	0.44	0.25	—	3.3	0.004	0.92	0.0	0.00	6.11	0.00	2.144	5.08	0.00	15.8	84.1	0.1	-2.69	2.06	0.77	0.75	—	13452	3363	3	0	0	0	0	logfile
✔	7TKM	25974	2022-12-14	2022-01-17	4.5	7.58	4.88	4.3	0.019	2.22	0.0	0.00	6.78	0.01	2.385	0.12	0.00	4.3	94.2	1.5	-0.44	0.59	0.59	—	4.3	0.005	0.90	0.0	0.00	6.11	0.00	2.052	17.76	0.00	11.5	88.1	0.4	-1.22	1.55	0.83	0.81	—	20227	5056	27	0	0	0	0	logfile

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