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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7EGB | 31111 | 2023-09-29 | 2021-03-24 | 3.3 | 3.51 | — | 34.0 | 0.008 | 1.11 | 62.0 | 0.07 | 15.43 | 0.01 | 1.322 | 21.13 | 3.22 | 7.3 | 91.9 | 0.8 | -3.64 | 0.32 | 0.02 | 0.13 | 3.0 | 0.006 | 0.97 | 0.0 | 0.05 | 16.75 | 0.01 | 1.840 | 21.35 | 0.38 | 8.6 | 91.2 | 0.2 | -1.17 | 1.17 | 0.43 | 0.22 | 0.25 | 113098 | 13887 | 63 | 138 | 18 | 0 | 0 | logfile |
✔ | 6XSS | 22305 | 2023-09-28 | 2020-07-16 | 3.7 | 3.37 | — | 3.3 | 0.003 | 0.63 | 0.0 | 0.04 | 12.31 | 0.00 | 1.843 | 28.34 | 0.00 | 2.5 | 97.5 | 0.0 | -0.32 | 0.74 | 0.78 | 0.04 | 3.3 | 0.003 | 0.80 | 0.0 | 0.04 | 16.96 | 0.00 | 2.251 | 16.62 | 0.49 | 0.9 | 99.1 | 0.0 | 2.42 | 1.33 | 0.74 | 0.79 | 0.26 | 8048 | 1040 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RX0 | 24721 | 2023-09-29 | 2021-08-20 | 3.89 | 4.63 | — | 4.5 | 0.006 | 0.85 | 1.0 | 0.05 | 15.16 | 0.00 | 1.666 | 29.17 | 0.00 | 7.1 | 92.9 | 0.0 | -2.61 | 0.60 | 0.82 | 0.77 | 4.5 | 0.004 | 0.85 | 0.0 | 0.04 | 17.06 | 0.00 | 1.959 | 23.04 | 0.51 | 5.6 | 94.4 | 0.0 | -0.68 | 0.81 | 0.60 | 0.82 | 0.27 | 9673 | 1182 | 7 | 0 | 83 | 0 | 0 | logfile |
✔ | 6UKT | 20812 | 2023-09-29 | 2019-10-05 | 3.87 | 4.71 | — | 4.3 | 0.007 | 1.03 | 0.0 | 0.06 | 16.89 | 0.01 | 2.247 | 10.29 | 0.46 | 15.8 | 84.2 | 0.0 | -5.03 | 0.89 | 0.80 | 0.36 | 4.3 | 0.003 | 0.71 | 0.0 | 0.04 | 17.55 | 0.00 | 2.116 | 15.46 | 0.11 | 12.1 | 87.9 | 0.0 | -2.31 | 0.57 | 0.90 | 0.84 | 0.27 | 8979 | 1204 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6H5i | 0140 | 2023-09-27 | 2018-07-24 | 3.9 | 3.87 | — | 23.0 | 0.006 | 0.81 | 0.0 | 0.05 | 10.47 | 0.01 | 2.196 | 2.64 | 0.17 | 4.3 | 95.7 | 0.0 | -1.74 | 0.29 | 0.06 | 0.15 | 3.7 | 0.003 | 0.67 | 0.0 | 0.04 | 15.36 | 0.00 | 2.097 | 14.22 | 0.32 | 4.1 | 95.9 | 0.0 | 1.46 | 1.26 | 0.37 | 0.24 | 0.27 | 43900 | 5392 | 26 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Y5G | 33619 | 2023-09-27 | 2022-06-17 | 3.85 | 4.19 | 3.81 | 4.2 | 0.002 | 0.43 | 0.0 | 0.04 | 12.74 | 0.00 | 2.084 | 2.19 | 0.00 | 0.7 | 99.3 | 0.0 | -0.05 | 0.63 | 0.72 | 1.21 | 4.1 | 0.002 | 0.53 | 0.0 | 0.04 | 15.35 | 0.00 | 2.030 | 5.10 | 0.38 | 1.0 | 99.0 | 0.0 | 1.53 | 0.65 | 0.65 | 0.75 | 0.28 | 4736 | 604 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 7NZM | 12665 | 2023-09-29 | 2021-03-24 | 3.96 | 6.56 | 4.22 | 4.2 | 0.007 | 1.12 | 0.0 | 0.06 | 13.94 | 0.01 | 1.774 | 11.10 | 0.00 | 3.8 | 96.2 | 0.0 | -1.56 | 0.77 | 0.51 | -0.04 | 4.3 | 0.003 | 0.74 | 0.0 | 0.04 | 15.04 | 0.00 | 2.061 | 18.47 | 0.21 | 2.9 | 97.1 | 0.0 | 0.28 | 1.50 | 0.94 | 0.84 | 0.28 | 9109 | 1157 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 7RTV | 24690 | 2023-09-27 | 2021-08-15 | 3.96 | 4.06 | — | 4.1 | 0.004 | 0.76 | 0.0 | 0.05 | 14.21 | 0.00 | 2.207 | 14.04 | 0.32 | 2.8 | 97.2 | 0.0 | 3.61 | 0.41 | 0.63 | 0.10 | 4.1 | 0.004 | 0.91 | 0.0 | 0.04 | 16.58 | 0.00 | 2.168 | 18.02 | 0.32 | 3.3 | 96.7 | 0.0 | 2.73 | 1.76 | 0.41 | 0.64 | 0.28 | 2881 | 366 | 3 | 0 | 6 | 0 | 0 | logfile |
✔ | 6XWQ | 10635 | 2023-09-29 | 2020-01-24 | 3.41 | 4.27 | — | 4.0 | 0.003 | 0.61 | 0.0 | 0.04 | 13.42 | 0.00 | 2.171 | 10.53 | 0.00 | 3.5 | 96.2 | 0.2 | -2.80 | 0.73 | 0.80 | 0.22 | 4.0 | 0.003 | 0.80 | 0.0 | 0.04 | 15.44 | 0.00 | 2.167 | 14.27 | 0.30 | 3.8 | 96.2 | 0.0 | 1.16 | 1.16 | 0.72 | 0.84 | 0.30 | 9572 | 1281 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J89 | 6123 | 2023-09-29 | 2014-10-07 | 3.6 | 2.21 | — | 3.5 | 0.022 | 1.64 | 0.0 | 0.10 | 11.97 | 0.01 | 2.578 | 2.11 | 0.00 | 3.5 | 96.5 | 0.0 | -0.96 | 0.83 | 0.81 | 0.77 | 3.2 | 0.003 | 0.49 | 0.0 | 0.03 | 20.68 | 0.00 | 2.114 | 8.31 | 1.00 | 0.6 | 99.4 | 0.0 | 3.03 | 1.98 | 0.81 | 0.79 | 0.31 | 9025 | 551 | 19 | 0 | 0 | 0 | 4598 | logfile |
✔ | 7Vo9 | 32049 | 2023-09-28 | 2021-10-13 | 3.8 | 3.98 | 3.82 | 3.8 | 0.011 | 1.58 | 1.0 | 0.09 | 23.08 | 0.00 | 2.124 | 6.40 | 0.76 | 0.8 | 99.2 | 0.0 | 2.89 | 0.75 | 0.63 | 0.88 | 3.9 | 0.004 | 0.74 | 0.0 | 0.04 | 27.09 | 0.00 | 1.932 | 21.60 | 0.76 | 0.8 | 99.2 | 0.0 | 0.94 | 1.14 | 0.78 | 0.68 | 0.32 | 5711 | 524 | 10 | 86 | 12 | 0 | 0 | logfile |
✔ | 7oZH | 13124 | 2023-09-27 | 2021-06-28 | 3.02 | 3.20 | 1.84 | 3.3 | 0.024 | 1.40 | 0.0 | 0.09 | 7.44 | 0.01 | 2.546 | 14.72 | 0.00 | 5.4 | 94.6 | 0.0 | -2.78 | 0.33 | 0.60 | 4.68 | 3.2 | 0.004 | 0.69 | 0.0 | 0.05 | 15.03 | 0.00 | 2.382 | 17.11 | 2.05 | 8.2 | 91.8 | 0.0 | -2.61 | 2.53 | 0.40 | 0.69 | 0.33 | 3890 | 580 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7QPG | 14120 | 2023-09-29 | 2022-01-04 | 3.9 | 4.08 | — | 2.8 | 0.002 | 0.54 | 0.0 | 0.04 | 10.05 | 0.00 | 2.093 | 6.89 | 0.00 | 2.7 | 97.3 | 0.0 | 0.34 | 0.78 | 0.58 | 0.22 | 2.3 | 0.003 | 0.67 | 0.0 | 0.04 | 13.10 | 0.00 | 2.137 | 11.18 | 0.11 | 3.0 | 97.0 | 0.0 | 1.12 | 0.84 | 0.88 | 0.76 | 0.33 | 57164 | 7156 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7FG3 | 31577 | 2023-09-29 | 2021-07-25 | 3.9 | 3.62 | — | 4.0 | 0.006 | 1.13 | 0.0 | 0.06 | 14.47 | 0.01 | 1.929 | 37.29 | 0.00 | 18.5 | 80.8 | 0.7 | -4.60 | 0.22 | 0.47 | -0.27 | 4.0 | 0.004 | 0.92 | 0.0 | 0.05 | 16.64 | 0.01 | 2.088 | 24.71 | 0.10 | 15.3 | 84.1 | 0.5 | -3.68 | 0.78 | 0.23 | 0.45 | 0.35 | 9054 | 1166 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8H9R | 34578 | 2023-09-27 | 2022-10-25 | 3.97 | 4.28 | 4.04 | 4.0 | 0.006 | 0.79 | 0.0 | 0.05 | 15.25 | 0.00 | 2.244 | 16.26 | 0.00 | 6.1 | 93.9 | 0.0 | -1.99 | 0.38 | 0.80 | 0.71 | 4.0 | 0.003 | 0.72 | 0.0 | 0.04 | 17.99 | 0.00 | 2.273 | 14.32 | 1.13 | 4.1 | 95.9 | 0.0 | 2.13 | 1.32 | 0.38 | 0.79 | 0.36 | 3381 | 421 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RTU | 24689 | 2023-09-28 | 2021-08-15 | 3.89 | 4.06 | — | 4.1 | 0.003 | 0.61 | 0.0 | 0.04 | 14.31 | 0.00 | 2.175 | 7.11 | 0.16 | 3.1 | 96.9 | 0.0 | 4.32 | 0.55 | 0.69 | 0.15 | 4.1 | 0.003 | 0.56 | 0.0 | 0.04 | 16.58 | 0.00 | 2.211 | 7.03 | 0.31 | 2.4 | 97.6 | 0.0 | 4.14 | 0.30 | 0.62 | 0.73 | 0.38 | 5962 | 754 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 6PMi | 20394 | 2023-09-29 | 2019-07-02 | 3.86 | 4.66 | — | 4.1 | 0.012 | 1.26 | 0.0 | 0.06 | 15.81 | 0.01 | 1.949 | 12.35 | 0.24 | 10.7 | 88.9 | 0.4 | -4.48 | 0.69 | 0.51 | 0.20 | 4.1 | 0.005 | 0.76 | 0.0 | 0.04 | 17.30 | 0.01 | 1.808 | 26.87 | 0.58 | 10.9 | 88.9 | 0.1 | -2.64 | 1.01 | 0.86 | 0.78 | 0.40 | 57985 | 3453 | 10 | 110 | 4 | 0 | 28610 | logfile |
✔ | 6W62 | 21551 | 2023-09-28 | 2020-03-16 | 3.9 | 4.04 | — | 4.0 | 0.003 | 0.64 | 1.0 | 0.04 | 14.23 | 0.00 | 1.883 | 16.29 | 0.00 | 10.2 | 89.4 | 0.3 | -2.04 | 0.71 | 0.67 | 1.02 | 4.0 | 0.004 | 0.80 | 0.0 | 0.05 | 16.84 | 0.00 | 2.079 | 21.09 | 0.89 | 10.9 | 89.1 | 0.0 | -1.93 | 1.22 | 0.72 | 0.69 | 0.40 | 7387 | 910 | 2 | 24 | 0 | 0 | 0 | logfile |
✔ | 7CG4 | 30350 | 2023-09-30 | 2020-06-30 | 3.6 | 4.04 | — | 3.9 | 0.003 | 0.69 | 0.0 | 0.04 | 14.90 | 0.00 | 2.192 | 7.47 | 0.34 | 5.1 | 94.9 | 0.0 | -2.88 | 0.49 | 0.77 | 0.53 | 4.0 | 0.004 | 0.88 | 0.0 | 0.04 | 17.36 | 0.00 | 2.148 | 10.42 | 0.51 | 5.3 | 94.7 | 0.1 | 1.07 | 1.96 | 0.45 | 0.76 | 0.41 | 10943 | 1419 | 11 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SXA | 10337 | 2023-09-28 | 2019-09-25 | 3.6 | 5.82 | 4.21 | 4.6 | 0.010 | 1.37 | 5.0 | 0.09 | 15.20 | 0.01 | 2.245 | 15.25 | 3.18 | 10.9 | 88.9 | 0.2 | -4.66 | 0.83 | 0.67 | -0.05 | 4.6 | 0.003 | 0.83 | 0.0 | 0.04 | 15.04 | 0.00 | 2.240 | 11.90 | 0.00 | 6.0 | 93.9 | 0.1 | -0.30 | 1.73 | 0.91 | 0.85 | 0.41 | 7014 | 943 | 2 | 0 | 0 | 0 | 0 | logfile |