Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5VA2	8651	2022-05-14	2017-03-24	3.8	5.28	—	4.3	0.008	1.08	0.0	0.06	12.47	0.00	1.607	11.52	1.08	7.7	90.7	1.6	-3.86	0.64	0.74	-0.32	4.3	0.004	0.99	0.0	0.05	16.12	0.00	2.063	25.77	0.27	5.1	94.6	0.4	-1.40	2.67	0.67	0.83	0.07	17576	2232	4	0	0	0	0	logfile
✔	5KPX	8282	2022-05-24	2016-07-05	3.9	5.30	4.08	3.8	0.008	1.18	6.0	0.09	14.40	0.01	2.087	29.97	0.58	13.2	80.2	6.6	-4.56	0.90	0.77	0.50	4.0	0.005	0.77	0.0	0.04	16.48	0.01	2.023	35.39	0.70	11.9	87.2	0.9	-2.29	1.08	0.94	0.90	0.07	154603	6623	59	4812	0	0	0	logfile
✔	5L3P	4001	2022-05-21	2016-05-24	3.7	4.66	—	16.0	0.006	0.60	0.0	0.19	12.42	0.02	2.115	7.26	0.00	8.2	89.4	2.4	-1.95	0.44	0.11	0.16	3.9	0.009	1.22	4.0	0.05	18.03	0.01	1.651	53.10	0.21	10.9	88.4	0.7	-2.75	2.46	0.66	0.41	0.07	149606	6419	58	4704	76	0	0	logfile
✔	6GEN	4396	2022-05-17	2018-04-27	3.6	4.67	—	4.5	0.004	0.75	0.0	0.04	20.46	0.01	2.109	5.91	8.77	3.9	96.0	0.0	-4.51	0.78	0.58	-0.18	4.4	0.003	0.76	0.0	0.04	21.34	0.00	1.014	16.32	0.38	4.7	95.3	0.0	-0.45	2.07	0.84	0.74	0.08	44481	4683	29	346	151	0	0	logfile
✔	6K9F	9948	2022-05-14	2019-06-15	3.7	7.50	4.15	7.2	0.002	0.45	0.0	0.03	11.87	0.00	2.356	5.29	0.00	0.0	100.0	0.0	-0.68	0.66	0.76	0.04	7.0	0.004	1.14	0.0	0.05	18.10	0.00	2.005	26.86	0.63	1.3	98.7	0.0	-0.41	3.86	0.67	0.84	0.10	8484	1044	12	0	0	0	0	logfile
✔	7LC9	23270	2022-05-12	2021-01-10	3.2	3.25	—	3.1	0.004	0.72	0.0	0.05	17.46	0.00	1.884	31.60	18.58	13.4	86.6	0.0	-4.15	0.71	0.77	-0.84	3.1	0.009	0.92	0.0	0.05	16.86	0.00	1.984	46.70	2.65	14.8	85.2	0.0	-3.60	0.67	0.70	0.81	0.10	3497	525	12	0	0	0	0	logfile
✔	7RTT	24688	2022-05-12	2021-08-15	3.5	3.91	—	3.9	0.003	0.54	0.0	0.04	14.95	0.00	2.239	5.02	0.00	3.6	96.4	0.0	2.65	0.60	0.73	1.03	3.9	0.003	0.59	0.0	0.04	16.45	0.00	2.210	5.82	0.00	4.0	96.0	0.0	3.73	1.64	0.61	0.73	0.11	6268	791	8	0	14	0	0	logfile
✔	6oiG	20077	2022-05-15	2019-04-09	3.8	5.08	—	5.0	0.011	1.45	2.0	0.07	19.62	0.01	0.087	53.76	1.20	15.9	83.9	0.2	-5.09	0.77	0.48	0.04	4.9	0.011	1.12	6.0	0.05	19.15	0.01	1.488	43.59	0.54	14.8	85.0	0.2	-3.20	3.08	0.89	0.86	0.12	129140	6757	48	3522	116	0	0	logfile
✔	7Woo	32653	2022-05-14	2022-01-22	3.71	4.08	—	3.9	0.010	1.69	139.0	0.10	15.86	0.01	1.041	23.20	4.33	9.3	88.5	2.2	-3.11	0.47	0.44	0.31	3.9	0.003	0.81	0.0	0.04	16.47	0.00	2.074	14.80	0.32	8.3	91.4	0.3	-0.41	1.64	0.48	0.44	0.13	66949	8644	12	0	0	0	0	logfile
✔	7DPA	30802	2022-05-16	2020-12-18	3.8	4.83	3.79	3.0	0.006	0.84	0.0	0.05	15.30	0.01	2.038	22.35	0.00	12.3	87.7	0.0	-3.05	0.70	0.39	0.50	3.0	0.003	0.80	0.0	0.04	16.87	0.00	2.042	21.54	0.11	8.4	91.6	0.0	-1.56	1.15	0.90	0.78	0.14	32858	4034	6	0	0	0	0	logfile
✔	7CQ7	30438	2022-05-13	2020-08-08	3.55	3.95	—	4.0	0.008	1.07	0.0	0.06	10.32	0.01	1.915	5.84	0.07	9.3	90.7	0.0	-4.47	0.39	0.42	0.13	3.9	0.010	1.18	0.0	0.04	15.42	0.01	1.619	19.03	0.40	7.6	92.4	0.0	-1.16	1.35	0.51	0.68	0.15	13810	1766	8	0	9	0	0	logfile
✔	3JCD	6549	2022-05-20	2015-12-01	3.7	5.07	—	19.0	0.006	0.83	0.0	0.04	14.69	0.00	1.289	14.69	0.02	9.6	85.8	4.5	-2.43	0.34	0.04	0.30	3.4	0.007	1.25	0.0	0.06	19.90	0.01	1.449	58.45	0.37	16.4	82.3	1.3	-4.16	2.42	0.69	0.40	0.16	147815	5982	57	4715	0	0	0	logfile
✔	6EU1	3956	2022-05-17	2017-10-27	3.4	3.40	—	6.6	0.005	1.13	0.0	0.06	12.93	0.01	1.732	6.56	0.50	16.1	83.5	0.4	-5.70	0.20	0.01	0.29	3.3	0.013	1.36	3.0	0.05	16.40	0.01	1.726	25.40	0.21	17.8	81.9	0.3	-4.08	2.02	0.48	0.41	0.16	40547	5012	24	43	7	0	0	logfile
✔	6FLQ	4275	2022-05-16	2018-01-26	3.6	3.93	3.76	40.0	0.016	1.33	0.0	0.07	14.73	0.01	1.897	5.97	1.40	10.8	89.1	0.1	-4.32	0.16	0.02	0.21	3.6	0.008	1.04	1.0	0.04	16.84	0.01	1.605	17.76	0.04	8.4	91.5	0.1	-1.51	1.95	0.24	0.17	0.16	30201	3868	10	91	3	0	0	logfile
✔	6PMJ	20395	2022-05-13	2019-07-02	3.91	5.34	—	4.4	0.011	1.21	0.0	0.06	15.82	0.01	2.011	11.05	0.31	10.4	89.3	0.3	-4.41	0.67	0.43	0.20	4.4	0.004	0.71	0.0	0.04	17.46	0.00	1.793	21.09	0.48	9.2	90.7	0.1	-2.17	1.65	0.89	0.77	0.16	57984	3453	10	110	4	0	28609	logfile
✔	7MF3	23810	2022-05-15	2021-04-08	3.4	4.14	—	3.2	0.003	0.68	0.0	0.04	15.41	0.00	1.985	17.49	0.04	6.5	93.5	0.0	-0.34	0.90	0.73	0.19	3.1	0.003	0.72	0.0	0.04	17.47	0.01	1.954	17.38	0.24	7.4	92.6	0.0	-0.73	1.45	0.91	0.74	0.16	22938	2822	12	0	8	0	0	logfile
✔	6TZ4	20588	2022-05-17	2019-08-10	3.2	3.81	3.16	3.7	0.010	0.48	0.0	0.04	8.47	0.00	2.212	3.95	0.00	1.4	98.6	0.0	-0.10	0.51	0.57	0.03	3.5	0.005	0.95	0.0	0.04	17.71	0.00	1.988	19.71	0.70	1.4	98.6	0.0	2.28	1.70	0.60	0.84	0.18	99216	12852	72	0	0	0	0	logfile
✔	6MDo	9102	2022-05-17	2018-09-04	3.9	5.46	—	4.2	0.015	1.44	0.0	0.12	13.30	0.01	2.012	6.72	0.16	0.3	99.6	0.0	-3.28	0.79	0.68	0.38	4.2	0.005	0.72	0.0	0.08	13.76	0.00	1.781	20.24	0.41	7.9	92.1	0.0	-1.53	1.53	0.87	0.85	0.19	45373	2843	13	0	11	0	22858	logfile
✔	6H5i	0140	2022-05-12	2018-07-24	3.9	3.87	—	23.0	0.006	0.81	0.0	0.05	10.47	0.01	2.196	2.64	0.17	4.3	95.7	0.0	-1.74	0.29	0.06	0.15	3.8	0.005	0.83	0.0	0.04	15.12	0.01	1.992	18.45	0.63	4.7	95.3	0.0	0.75	1.92	0.38	0.26	0.19	43900	5392	26	0	0	0	0	logfile
✔	5GAK	3227	2022-05-15	2015-12-09	3.88	4.13	—	19.0	0.006	0.94	0.0	0.06	20.85	0.01	0.816	23.97	0.26	9.2	90.2	0.7	-3.81	0.21	0.02	0.28	3.8	0.006	0.94	3.0	0.05	19.64	0.01	1.918	24.95	0.40	9.8	89.8	0.4	-2.82	1.75	0.32	0.23	0.19	128975	6434	50	3597	234	0	0	logfile

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