Table showing results for June 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6iP1	9697	2021-06-02	2018-11-01	3.9	4.05	—	4.0	0.006	1.03	0.0	0.05	11.71	0.00	1.321	7.91	0.34	7.5	92.5	0.0	-5.85	0.59	0.72	1.01	4.0	0.004	0.93	0.0	0.05	18.49	0.01	2.067	20.31	1.27	8.0	92.0	0.0	-0.70	4.15	0.61	0.76	0.08	11245	1420	8	0	0	0	0	logfile
✔	6CXC	7774	2021-06-02	2018-04-02	3.9	4.14	—	4.0	0.006	1.03	0.0	0.06	10.95	0.01	2.198	9.05	0.29	6.2	93.8	0.0	-4.06	0.71	0.71	0.12	4.0	0.004	0.84	0.0	0.05	16.73	0.00	1.943	26.10	0.57	7.4	92.6	0.0	-2.59	2.19	0.73	0.77	0.12	15196	1945	18	0	6	0	0	logfile
✔	6FLQ	4275	2021-06-04	2018-01-26	3.6	3.93	3.76	40.0	0.016	1.33	0.0	0.07	14.73	0.01	1.897	5.97	1.40	10.8	89.1	0.1	-4.32	0.16	0.02	0.21	3.8	0.007	1.14	0.0	0.06	17.19	0.01	1.914	26.04	0.88	12.3	87.6	0.1	-2.43	2.36	0.30	0.27	0.14	30201	3868	10	91	3	0	0	logfile
✔	6TUP	10593	2021-06-03	2020-01-08	3.2	3.52	—	3.3	0.011	1.02	0.0	0.05	21.23	0.00	0.032	54.60	0.00	0.0	100.0	0.0	-7.04	0.49	0.47	1.19	3.4	0.034	2.29	0.0	0.20	26.66	0.01	0.685	106.74	1.62	3.4	96.6	0.0	-3.10	9.78	0.57	0.63	0.14	22400	2300	100	300	0	0	0	logfile
✔	7KY5	23068	2021-06-02	2020-12-07	3.98	4.52	—	4.3	0.019	0.71	0.0	0.11	12.97	0.01	2.200	16.32	0.07	6.6	93.4	0.0	-1.06	0.72	0.75	0.32	4.3	0.004	0.75	0.0	0.05	15.34	0.00	1.664	23.24	1.04	8.4	91.6	0.0	-1.22	1.06	0.74	0.78	0.16	12483	1534	6	0	15	0	0	logfile
✔	6RED	4850	2021-06-04	2019-04-12	3.0	3.22	3.14	27.0	0.012	1.05	0.0	0.06	14.48	0.01	2.140	5.83	0.31	4.7	95.2	0.1	-3.86	0.16	0.02	0.19	28.0	0.004	0.72	0.0	0.04	15.84	0.01	1.893	15.59	1.88	4.3	95.6	0.1	-0.47	1.91	0.24	0.15	0.18	33899	4503	25	0	10	0	0	logfile
✔	7EGB	31111	2021-06-04	2021-03-24	3.3	3.51	—	34.0	0.008	1.11	62.0	0.07	15.42	0.01	1.322	20.78	3.22	7.3	91.9	0.8	-3.64	0.32	0.02	0.13	3.0	0.009	1.16	4.0	0.06	16.76	0.01	1.819	24.38	0.54	8.6	91.0	0.4	-1.09	1.31	0.43	0.23	0.18	113098	13887	63	138	18	0	0	logfile
✔	5ZEP	6921	2021-06-05	2018-02-27	3.4	5.11	—	4.5	0.010	1.18	5.0	0.06	16.72	0.01	1.089	21.05	3.06	8.5	90.3	1.3	-3.96	0.70	0.53	0.11	4.5	0.004	0.75	0.0	0.04	18.00	0.01	1.979	31.00	0.99	8.3	91.6	0.2	-1.63	3.11	0.90	0.86	0.18	152451	6193	58	4802	262	0	0	logfile
✔	7KML	22926	2021-06-04	2020-11-03	3.8	4.97	3.83	3.8	0.018	1.88	0.0	0.10	10.58	0.01	2.415	0.53	0.39	1.9	98.1	0.0	0.45	0.89	0.76	0.63	3.9	0.004	0.76	0.0	0.04	14.84	0.00	2.119	25.54	0.50	6.2	93.8	0.0	-0.48	2.17	0.91	0.83	0.19	35136	4413	39	0	78	0	0	logfile
✔	5SYG	8323	2021-06-07	2016-08-11	3.5	4.52	—	4.3	0.014	2.16	26.0	0.08	16.28	0.01	1.825	21.96	1.10	4.7	94.9	0.4	-3.19	0.55	0.72	0.18	4.3	0.006	1.03	0.0	0.05	18.31	0.01	1.923	32.22	0.79	5.7	94.3	0.0	-0.29	1.73	0.57	0.80	0.20	176592	22152	104	26	78	0	0	logfile
✔	5KPX	8282	2021-06-06	2016-07-05	3.9	5.30	4.08	3.8	0.008	1.18	6.0	0.09	14.40	0.01	2.087	29.47	0.58	13.2	80.2	6.6	-4.56	0.90	0.77	0.50	4.0	0.006	0.79	0.0	0.04	16.89	0.01	2.003	39.28	0.91	12.1	86.9	1.0	-2.37	1.40	0.94	0.90	0.20	154603	6623	59	4812	0	0	0	logfile
✔	7AS9	11890	2021-06-03	2020-10-27	3.5	4.52	3.51	4.2	0.007	0.98	0.0	0.05	17.12	0.01	1.976	8.18	0.07	13.0	86.6	0.4	-4.86	0.92	0.83	0.18	4.2	0.006	0.87	0.0	0.04	18.68	0.01	1.943	39.71	1.36	12.3	87.6	0.1	-2.94	0.82	0.92	0.84	0.20	93137	3720	32	2999	0	0	0	logfile
✔	6QZF	4685	2021-06-01	2019-03-11	3.8	4.25	—	4.1	0.010	1.06	0.0	0.06	10.18	0.01	2.143	10.25	0.16	9.8	90.1	0.0	-4.87	0.67	0.72	0.54	4.1	0.004	0.99	0.0	0.05	17.54	0.00	2.001	26.19	0.94	8.1	91.9	0.0	-2.12	1.81	0.66	0.72	0.20	71628	8880	60	0	0	0	0	logfile
✔	3JCE	6550	2021-06-05	2015-12-01	3.2	4.36	—	14.0	0.008	0.88	0.0	0.04	14.83	0.00	1.106	32.35	0.47	10.4	84.8	4.8	-2.93	0.33	0.04	0.16	3.1	0.007	1.27	1.0	0.06	21.85	0.01	1.546	58.17	0.93	16.7	82.1	1.1	-4.21	3.51	0.78	0.56	0.21	154017	6546	59	4797	3	0	0	logfile
✔	6H5i	0140	2021-06-05	2018-07-24	3.9	3.87	—	23.0	0.006	0.84	0.0	0.05	10.47	0.01	2.196	2.63	0.17	4.3	95.7	0.0	-1.74	0.29	0.06	0.15	3.8	0.004	0.79	0.0	0.04	15.71	0.01	2.065	17.05	0.36	5.0	95.0	0.0	0.39	2.20	0.39	0.28	0.21	43900	5392	26	0	0	0	0	logfile
✔	6KKR	0701	2021-06-01	2019-07-27	2.9	2.91	—	20.0	0.008	1.10	0.0	0.06	10.85	0.01	2.348	3.23	0.23	3.9	96.1	0.0	-3.53	0.05	0.00	-0.07	2.8	0.003	0.70	0.0	0.04	12.46	0.00	2.166	9.75	1.70	3.5	96.5	0.0	0.80	1.66	0.12	0.10	0.21	8416	1074	4	0	24	0	0	logfile
✔	5LKH	4068	2021-06-04	2016-07-22	3.46	5.27	—	11.0	0.018	2.37	65.0	0.12	12.66	0.02	2.255	85.51	1.96	3.4	95.2	1.4	-0.27	0.38	0.17	-0.03	4.4	0.005	0.85	0.0	0.04	15.69	0.01	2.053	28.37	0.17	6.8	93.2	0.0	-0.70	2.41	0.40	0.26	0.22	37345	4740	5	0	0	0	0	logfile
✔	6Xi8	22191	2021-06-01	2020-06-19	3.64	2.63	3.78	2.0	0.010	1.69	4.0	0.11	15.71	0.01	1.333	6.38	0.77	9.0	91.0	0.0	-4.62	0.66	0.54	0.71	1.9	0.006	1.30	0.0	0.05	17.72	0.01	2.095	19.86	0.97	9.2	90.8	0.0	-2.43	1.33	0.69	0.64	0.22	5022	636	4	0	2	0	0	logfile
✔	6UMM	20820	2021-06-03	2019-10-09	3.7	6.74	4.15	4.0	0.006	0.79	0.0	0.04	13.23	0.00	2.203	11.69	0.17	4.8	95.2	0.0	-2.07	0.55	0.56	-0.10	4.1	0.004	0.92	0.0	0.05	14.32	0.00	2.076	22.83	0.17	3.8	96.2	0.0	0.96	1.25	0.62	0.80	0.22	23658	3184	10	0	0	0	0	logfile
✔	3JCD	6549	2021-06-04	2015-12-01	3.7	5.07	—	19.0	0.006	0.84	0.0	0.04	14.69	0.00	1.289	14.54	0.02	9.6	85.8	4.5	-2.43	0.34	0.04	0.30	3.5	0.006	1.28	0.0	0.06	22.39	0.01	1.430	64.25	0.80	19.6	79.1	1.3	-4.44	3.47	0.77	0.53	0.22	147815	5982	57	4715	0	0	0	logfile

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