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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7RTV | 24690 | 2024-03-10 | 2021-08-15 | 3.96 | 4.06 | — | 4.1 | 0.004 | 0.76 | 0.0 | 0.05 | 24.99 | 0.00 | 2.207 | 14.04 | 0.32 | 2.8 | 97.2 | 0.0 | 3.61 | 0.41 | 0.63 | 0.10 | 4.1 | 0.003 | 0.92 | 0.0 | 0.05 | 17.35 | 0.00 | 2.201 | 16.81 | 5.19 | 2.8 | 97.2 | 0.0 | 3.26 | 0.50 | 0.42 | 0.64 | -0.08 | 2881 | 366 | 3 | 0 | 6 | 0 | 0 | logfile |
✔ | 7PQG | 13593 | 2024-03-10 | 2021-09-21 | 3.7 | 4.20 | — | 4.0 | 0.004 | 0.88 | 0.0 | 0.05 | 12.56 | 0.01 | 2.204 | 28.36 | 0.28 | 7.4 | 92.6 | 0.0 | -0.87 | 0.56 | 0.76 | 0.82 | 4.0 | 0.004 | 1.04 | 0.0 | 0.06 | 15.86 | 0.00 | 2.132 | 35.30 | 3.36 | 7.6 | 92.4 | 0.0 | -0.93 | 0.68 | 0.56 | 0.77 | -0.07 | 3251 | 423 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JCD | 6549 | 2024-03-24 | 2015-12-01 | 3.7 | 5.07 | — | 19.0 | 0.006 | 0.83 | 0.0 | 0.04 | 22.77 | 0.00 | 1.289 | 14.63 | 0.02 | 9.6 | 85.8 | 4.5 | -2.43 | 0.34 | 0.04 | 0.30 | 3.4 | 0.004 | 1.00 | 0.0 | 0.05 | 25.37 | 0.01 | 1.534 | 38.21 | 2.07 | 13.9 | 84.8 | 1.3 | -3.81 | 2.45 | 0.69 | 0.40 | -0.06 | 147815 | 5982 | 57 | 4715 | 0 | 0 | 0 | logfile |
✔ | 6Z3A | 11055 | 2024-03-25 | 2020-05-19 | 3.8 | 4.08 | — | 3.8 | 0.007 | 1.25 | 2.0 | 0.06 | 12.66 | 0.01 | 1.678 | 10.98 | 1.08 | 11.1 | 88.8 | 0.1 | -4.47 | 0.78 | 0.75 | 0.21 | 3.8 | 0.004 | 0.92 | 0.0 | 0.05 | 15.71 | 0.00 | 1.990 | 25.99 | 3.35 | 9.5 | 90.5 | 0.0 | -1.84 | 2.32 | 0.80 | 0.76 | -0.05 | 46142 | 5730 | 6 | 0 | 4 | 0 | 0 | logfile |
✔ | 7N8N | 24238 | 2024-03-15 | 2021-06-15 | 3.89 | 5.26 | — | 4.4 | 0.006 | 0.85 | 0.0 | 0.04 | 27.93 | 0.01 | 2.035 | 27.61 | 0.00 | 9.6 | 90.4 | 0.0 | -1.71 | 0.87 | 0.78 | -0.56 | 4.4 | 0.004 | 0.75 | 0.0 | 0.04 | 28.76 | 0.01 | 2.141 | 21.14 | 2.63 | 6.8 | 92.9 | 0.3 | -0.72 | 1.28 | 0.87 | 0.80 | -0.05 | 11121 | 798 | 6 | 250 | 0 | 0 | 0 | logfile |
✔ | 8A1R | 15084 | 2024-03-14 | 2022-06-01 | 3.6 | 5.63 | 3.62 | 3.4 | 0.011 | 0.86 | 0.0 | 0.06 | 16.56 | 0.00 | 2.097 | 11.72 | 0.00 | 5.2 | 94.8 | 0.0 | -0.06 | 0.91 | 0.75 | -0.28 | 3.5 | 0.003 | 0.69 | 0.0 | 0.05 | 16.41 | 0.00 | 2.166 | 19.75 | 1.12 | 6.4 | 93.6 | 0.0 | -0.56 | 0.61 | 0.95 | 0.86 | -0.05 | 9286 | 1186 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 7oCK | 12809 | 2024-03-20 | 2021-04-27 | 3.6 | 5.02 | — | 8.3 | 0.008 | 0.86 | 0.0 | 0.05 | 14.98 | 0.01 | 1.988 | 36.10 | 0.20 | 7.7 | 92.1 | 0.2 | -2.93 | 0.80 | 0.41 | -0.16 | 5.6 | 0.006 | 1.01 | 1.0 | 0.05 | 17.05 | 0.01 | 1.953 | 42.81 | 3.20 | 6.6 | 93.3 | 0.1 | -1.45 | 1.41 | 0.87 | 0.65 | -0.05 | 28276 | 3666 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6FLQ | 4275 | 2024-03-21 | 2018-01-26 | 3.6 | 3.93 | 3.76 | 40.0 | 0.016 | 1.33 | 0.0 | 0.07 | 15.27 | 0.01 | 1.897 | 5.97 | 1.40 | 10.8 | 89.1 | 0.1 | -4.32 | 0.16 | 0.02 | 0.21 | 3.7 | 0.006 | 1.01 | 1.0 | 0.05 | 17.68 | 0.01 | 1.917 | 21.67 | 3.97 | 11.5 | 88.4 | 0.1 | -1.93 | 2.09 | 0.27 | 0.21 | -0.04 | 30201 | 3868 | 10 | 91 | 3 | 0 | 0 | logfile |
✔ | 6GEN | 4396 | 2024-03-25 | 2018-04-27 | 3.6 | 4.67 | — | 4.5 | 0.004 | 0.75 | 0.0 | 0.04 | 20.64 | 0.01 | 2.109 | 5.89 | 8.77 | 3.9 | 96.0 | 0.0 | -4.51 | 0.78 | 0.58 | -0.18 | 4.5 | 0.003 | 0.76 | 0.0 | 0.04 | 21.37 | 0.00 | 0.980 | 17.58 | 2.40 | 4.9 | 95.1 | 0.0 | -0.46 | 1.30 | 0.85 | 0.74 | -0.02 | 44481 | 4683 | 29 | 346 | 151 | 0 | 0 | logfile |
✔ | 7QG8 | 13952 | 2024-03-25 | 2021-12-07 | 3.97 | 7.71 | — | 4.0 | 0.016 | 1.62 | 61.0 | 0.11 | 22.93 | 0.01 | 0.770 | 4.86 | 1.61 | 8.6 | 90.4 | 1.0 | -3.97 | 0.64 | 0.40 | 0.16 | 4.0 | 0.003 | 0.74 | 0.0 | 0.04 | 24.56 | 0.01 | 1.902 | 35.77 | 2.68 | 10.2 | 89.7 | 0.1 | -2.28 | 3.35 | 0.84 | 0.76 | -0.02 | 147108 | 5936 | 58 | 4695 | 3 | 9 | 0 | logfile |
✔ | 7T3L | 25662 | 2024-03-26 | 2021-12-08 | 3.6 | 8.29 | — | 3.5 | 0.004 | 0.74 | 0.0 | 0.05 | 18.09 | 0.01 | 2.223 | 7.57 | 0.52 | 5.0 | 95.0 | 0.0 | -1.92 | 0.73 | 0.45 | -0.03 | 3.4 | 0.003 | 0.61 | 0.0 | 0.04 | 18.37 | 0.00 | 2.091 | 21.81 | 1.24 | 5.6 | 94.4 | 0.0 | 0.29 | 1.18 | 0.95 | 0.84 | -0.02 | 52219 | 6242 | 28 | 200 | 0 | 0 | 0 | logfile |
✔ | 8J88 | 36063 | 2024-03-11 | 2023-05-01 | 3.49 | 4.36 | 3.55 | 3.5 | 0.002 | 0.56 | 0.0 | 0.04 | 11.87 | 0.00 | 2.205 | 5.61 | 0.00 | 4.8 | 95.2 | 0.0 | -0.95 | 0.81 | 0.59 | 0.05 | 3.5 | 0.002 | 0.55 | 0.0 | 0.04 | 13.96 | 0.00 | 2.179 | 9.69 | 0.59 | 5.4 | 94.6 | 0.0 | 0.27 | 1.05 | 0.82 | 0.62 | -0.01 | 7846 | 954 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PMJ | 20395 | 2024-03-11 | 2019-07-02 | 3.91 | 5.34 | — | 4.4 | 0.011 | 1.21 | 0.0 | 0.06 | 16.10 | 0.01 | 2.011 | 11.04 | 0.31 | 10.4 | 89.3 | 0.3 | -4.41 | 0.67 | 0.43 | 0.20 | 4.4 | 0.005 | 0.78 | 0.0 | 0.04 | 17.77 | 0.01 | 1.544 | 30.07 | 2.96 | 10.6 | 89.3 | 0.1 | -2.53 | 1.67 | 0.89 | 0.77 | 0.02 | 57984 | 3453 | 10 | 110 | 4 | 0 | 28609 | logfile |
✔ | 7EGB | 31111 | 2024-03-11 | 2021-03-24 | 3.3 | 3.51 | — | 34.0 | 0.008 | 1.11 | 62.0 | 0.07 | 15.49 | 0.01 | 1.322 | 21.13 | 3.22 | 7.3 | 91.9 | 0.8 | -3.64 | 0.32 | 0.02 | 0.13 | 10.0 | 0.004 | 0.83 | 3.0 | 0.05 | 16.74 | 0.01 | 1.659 | 17.27 | 2.30 | 6.4 | 93.5 | 0.2 | -0.97 | 1.04 | 0.41 | 0.18 | 0.03 | 113098 | 13887 | 63 | 138 | 18 | 0 | 0 | logfile |
✔ | 8UHF | 42279 | 2024-03-15 | 2023-10-09 | 3.8 | 3.77 | — | 1.7 | 0.002 | 0.49 | 0.0 | 0.04 | 12.21 | 0.00 | 2.126 | 10.07 | 0.00 | 3.0 | 97.0 | 0.0 | -1.49 | 0.62 | 0.79 | 0.57 | 1.6 | 0.003 | 0.78 | 0.0 | 0.04 | 15.72 | 0.00 | 2.146 | 18.48 | 2.99 | 3.7 | 96.3 | 0.0 | 0.18 | 0.89 | 0.63 | 0.80 | 0.04 | 12411 | 1739 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 8U84 | 42008 | 2024-03-23 | 2023-09-15 | 3.88 | 4.89 | 3.87 | 2.9 | 0.004 | 0.84 | 0.0 | 0.05 | 16.82 | 0.01 | 2.125 | 14.34 | 0.62 | 5.2 | 94.5 | 0.3 | -0.92 | 0.90 | 0.75 | 0.16 | 2.8 | 0.004 | 0.75 | 0.0 | 0.04 | 17.42 | 0.00 | 2.069 | 25.04 | 2.83 | 6.2 | 93.8 | 0.1 | -0.54 | 1.21 | 0.90 | 0.78 | 0.04 | 37885 | 4770 | 20 | 0 | 0 | 0 | 0 | logfile |
✔ | 8U81 | 41996 | 2024-03-23 | 2023-09-15 | 3.82 | 4.70 | 3.78 | 2.8 | 0.004 | 0.80 | 0.0 | 0.04 | 17.06 | 0.01 | 2.097 | 15.68 | 0.60 | 5.0 | 94.9 | 0.1 | -1.07 | 0.88 | 0.75 | 0.15 | 2.9 | 0.004 | 0.73 | 0.0 | 0.04 | 17.79 | 0.00 | 2.071 | 25.28 | 2.88 | 5.9 | 94.0 | 0.1 | -0.79 | 0.57 | 0.89 | 0.75 | 0.04 | 37890 | 4770 | 20 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EXR | 28660 | 2024-03-10 | 2022-10-25 | 3.8 | 4.08 | 3.96 | 4.1 | 0.026 | 1.94 | 0.0 | 0.11 | 12.16 | 0.01 | 2.016 | 3.98 | 0.00 | 2.8 | 96.9 | 0.3 | -0.66 | 0.58 | 0.68 | 1.29 | 4.1 | 0.003 | 0.70 | 0.0 | 0.04 | 16.49 | 0.01 | 2.172 | 13.83 | 2.48 | 3.3 | 96.7 | 0.0 | -0.69 | 1.25 | 0.54 | 0.67 | 0.04 | 5111 | 590 | 5 | 0 | 7 | 0 | 0 | logfile |
✔ | 8CQR | 16799 | 2024-03-14 | 2023-03-07 | 3.8 | 4.35 | 3.84 | 4.2 | 0.002 | 0.43 | 0.0 | 0.03 | 11.30 | 0.00 | 2.374 | 4.02 | 0.00 | 4.0 | 96.0 | 0.0 | 0.53 | 0.43 | 0.64 | 1.08 | 4.2 | 0.003 | 0.55 | 0.0 | 0.04 | 15.15 | 0.00 | 2.268 | 12.88 | 2.13 | 4.3 | 95.7 | 0.0 | 1.86 | 1.50 | 0.44 | 0.66 | 0.04 | 9708 | 618 | 6 | 0 | 0 | 0 | 5010 | logfile |
✔ | 5VA2 | 8651 | 2024-03-17 | 2017-03-24 | 3.8 | 5.28 | — | 4.3 | 0.008 | 1.08 | 0.0 | 0.06 | 12.47 | 0.00 | 1.607 | 11.18 | 1.08 | 7.7 | 90.7 | 1.6 | -3.86 | 0.64 | 0.74 | -0.32 | 4.2 | 0.004 | 0.94 | 0.0 | 0.05 | 16.35 | 0.00 | 2.107 | 24.66 | 3.30 | 4.9 | 94.7 | 0.4 | -1.25 | 1.94 | 0.68 | 0.83 | 0.05 | 17576 | 2232 | 4 | 0 | 0 | 0 | 0 | logfile |