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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5VA2 | 8651 | 2022-05-14 | 2017-03-24 | 3.8 | 5.28 | — | 4.3 | 0.008 | 1.08 | 0.0 | 0.06 | 12.47 | 0.00 | 1.607 | 11.52 | 1.08 | 7.7 | 90.7 | 1.6 | -3.86 | 0.64 | 0.74 | -0.32 | 4.3 | 0.004 | 0.99 | 0.0 | 0.05 | 16.12 | 0.00 | 2.063 | 25.77 | 0.27 | 5.1 | 94.6 | 0.4 | -1.40 | 2.67 | 0.67 | 0.83 | 0.07 | 17576 | 2232 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 5KPX | 8282 | 2022-05-24 | 2016-07-05 | 3.9 | 5.30 | 4.08 | 3.8 | 0.008 | 1.18 | 6.0 | 0.09 | 14.40 | 0.01 | 2.087 | 29.97 | 0.58 | 13.2 | 80.2 | 6.6 | -4.56 | 0.90 | 0.77 | 0.50 | 4.0 | 0.005 | 0.77 | 0.0 | 0.04 | 16.48 | 0.01 | 2.023 | 35.39 | 0.70 | 11.9 | 87.2 | 0.9 | -2.29 | 1.08 | 0.94 | 0.90 | 0.07 | 154603 | 6623 | 59 | 4812 | 0 | 0 | 0 | logfile |
✔ | 5L3P | 4001 | 2022-05-21 | 2016-05-24 | 3.7 | 4.66 | — | 16.0 | 0.006 | 0.60 | 0.0 | 0.19 | 12.42 | 0.02 | 2.115 | 7.26 | 0.00 | 8.2 | 89.4 | 2.4 | -1.95 | 0.44 | 0.11 | 0.16 | 3.9 | 0.009 | 1.22 | 4.0 | 0.05 | 18.03 | 0.01 | 1.651 | 53.10 | 0.21 | 10.9 | 88.4 | 0.7 | -2.75 | 2.46 | 0.66 | 0.41 | 0.07 | 149606 | 6419 | 58 | 4704 | 76 | 0 | 0 | logfile |
✔ | 6GEN | 4396 | 2022-05-17 | 2018-04-27 | 3.6 | 4.67 | — | 4.5 | 0.004 | 0.75 | 0.0 | 0.04 | 20.46 | 0.01 | 2.109 | 5.91 | 8.77 | 3.9 | 96.0 | 0.0 | -4.51 | 0.78 | 0.58 | -0.18 | 4.4 | 0.003 | 0.76 | 0.0 | 0.04 | 21.34 | 0.00 | 1.014 | 16.32 | 0.38 | 4.7 | 95.3 | 0.0 | -0.45 | 2.07 | 0.84 | 0.74 | 0.08 | 44481 | 4683 | 29 | 346 | 151 | 0 | 0 | logfile |
✔ | 6K9F | 9948 | 2022-05-14 | 2019-06-15 | 3.7 | 7.50 | 4.15 | 7.2 | 0.002 | 0.45 | 0.0 | 0.03 | 11.87 | 0.00 | 2.356 | 5.29 | 0.00 | 0.0 | 100.0 | 0.0 | -0.68 | 0.66 | 0.76 | 0.04 | 7.0 | 0.004 | 1.14 | 0.0 | 0.05 | 18.10 | 0.00 | 2.005 | 26.86 | 0.63 | 1.3 | 98.7 | 0.0 | -0.41 | 3.86 | 0.67 | 0.84 | 0.10 | 8484 | 1044 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LC9 | 23270 | 2022-05-12 | 2021-01-10 | 3.2 | 3.25 | — | 3.1 | 0.004 | 0.72 | 0.0 | 0.05 | 17.46 | 0.00 | 1.884 | 31.60 | 18.58 | 13.4 | 86.6 | 0.0 | -4.15 | 0.71 | 0.77 | -0.84 | 3.1 | 0.009 | 0.92 | 0.0 | 0.05 | 16.86 | 0.00 | 1.984 | 46.70 | 2.65 | 14.8 | 85.2 | 0.0 | -3.60 | 0.67 | 0.70 | 0.81 | 0.10 | 3497 | 525 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RTT | 24688 | 2022-05-12 | 2021-08-15 | 3.5 | 3.91 | — | 3.9 | 0.003 | 0.54 | 0.0 | 0.04 | 14.95 | 0.00 | 2.239 | 5.02 | 0.00 | 3.6 | 96.4 | 0.0 | 2.65 | 0.60 | 0.73 | 1.03 | 3.9 | 0.003 | 0.59 | 0.0 | 0.04 | 16.45 | 0.00 | 2.210 | 5.82 | 0.00 | 4.0 | 96.0 | 0.0 | 3.73 | 1.64 | 0.61 | 0.73 | 0.11 | 6268 | 791 | 8 | 0 | 14 | 0 | 0 | logfile |
✔ | 6oiG | 20077 | 2022-05-15 | 2019-04-09 | 3.8 | 5.08 | — | 5.0 | 0.011 | 1.45 | 2.0 | 0.07 | 19.62 | 0.01 | 0.087 | 53.76 | 1.20 | 15.9 | 83.9 | 0.2 | -5.09 | 0.77 | 0.48 | 0.04 | 4.9 | 0.011 | 1.12 | 6.0 | 0.05 | 19.15 | 0.01 | 1.488 | 43.59 | 0.54 | 14.8 | 85.0 | 0.2 | -3.20 | 3.08 | 0.89 | 0.86 | 0.12 | 129140 | 6757 | 48 | 3522 | 116 | 0 | 0 | logfile |
✔ | 7Woo | 32653 | 2022-05-14 | 2022-01-22 | 3.71 | 4.08 | — | 3.9 | 0.010 | 1.69 | 139.0 | 0.10 | 15.86 | 0.01 | 1.041 | 23.20 | 4.33 | 9.3 | 88.5 | 2.2 | -3.11 | 0.47 | 0.44 | 0.31 | 3.9 | 0.003 | 0.81 | 0.0 | 0.04 | 16.47 | 0.00 | 2.074 | 14.80 | 0.32 | 8.3 | 91.4 | 0.3 | -0.41 | 1.64 | 0.48 | 0.44 | 0.13 | 66949 | 8644 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7DPA | 30802 | 2022-05-16 | 2020-12-18 | 3.8 | 4.83 | 3.79 | 3.0 | 0.006 | 0.84 | 0.0 | 0.05 | 15.30 | 0.01 | 2.038 | 22.35 | 0.00 | 12.3 | 87.7 | 0.0 | -3.05 | 0.70 | 0.39 | 0.50 | 3.0 | 0.003 | 0.80 | 0.0 | 0.04 | 16.87 | 0.00 | 2.042 | 21.54 | 0.11 | 8.4 | 91.6 | 0.0 | -1.56 | 1.15 | 0.90 | 0.78 | 0.14 | 32858 | 4034 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7CQ7 | 30438 | 2022-05-13 | 2020-08-08 | 3.55 | 3.95 | — | 4.0 | 0.008 | 1.07 | 0.0 | 0.06 | 10.32 | 0.01 | 1.915 | 5.84 | 0.07 | 9.3 | 90.7 | 0.0 | -4.47 | 0.39 | 0.42 | 0.13 | 3.9 | 0.010 | 1.18 | 0.0 | 0.04 | 15.42 | 0.01 | 1.619 | 19.03 | 0.40 | 7.6 | 92.4 | 0.0 | -1.16 | 1.35 | 0.51 | 0.68 | 0.15 | 13810 | 1766 | 8 | 0 | 9 | 0 | 0 | logfile |
✔ | 3JCD | 6549 | 2022-05-20 | 2015-12-01 | 3.7 | 5.07 | — | 19.0 | 0.006 | 0.83 | 0.0 | 0.04 | 14.69 | 0.00 | 1.289 | 14.69 | 0.02 | 9.6 | 85.8 | 4.5 | -2.43 | 0.34 | 0.04 | 0.30 | 3.4 | 0.007 | 1.25 | 0.0 | 0.06 | 19.90 | 0.01 | 1.449 | 58.45 | 0.37 | 16.4 | 82.3 | 1.3 | -4.16 | 2.42 | 0.69 | 0.40 | 0.16 | 147815 | 5982 | 57 | 4715 | 0 | 0 | 0 | logfile |
✔ | 6EU1 | 3956 | 2022-05-17 | 2017-10-27 | 3.4 | 3.40 | — | 6.6 | 0.005 | 1.13 | 0.0 | 0.06 | 12.93 | 0.01 | 1.732 | 6.56 | 0.50 | 16.1 | 83.5 | 0.4 | -5.70 | 0.20 | 0.01 | 0.29 | 3.3 | 0.013 | 1.36 | 3.0 | 0.05 | 16.40 | 0.01 | 1.726 | 25.40 | 0.21 | 17.8 | 81.9 | 0.3 | -4.08 | 2.02 | 0.48 | 0.41 | 0.16 | 40547 | 5012 | 24 | 43 | 7 | 0 | 0 | logfile |
✔ | 6FLQ | 4275 | 2022-05-16 | 2018-01-26 | 3.6 | 3.93 | 3.76 | 40.0 | 0.016 | 1.33 | 0.0 | 0.07 | 14.73 | 0.01 | 1.897 | 5.97 | 1.40 | 10.8 | 89.1 | 0.1 | -4.32 | 0.16 | 0.02 | 0.21 | 3.6 | 0.008 | 1.04 | 1.0 | 0.04 | 16.84 | 0.01 | 1.605 | 17.76 | 0.04 | 8.4 | 91.5 | 0.1 | -1.51 | 1.95 | 0.24 | 0.17 | 0.16 | 30201 | 3868 | 10 | 91 | 3 | 0 | 0 | logfile |
✔ | 6PMJ | 20395 | 2022-05-13 | 2019-07-02 | 3.91 | 5.34 | — | 4.4 | 0.011 | 1.21 | 0.0 | 0.06 | 15.82 | 0.01 | 2.011 | 11.05 | 0.31 | 10.4 | 89.3 | 0.3 | -4.41 | 0.67 | 0.43 | 0.20 | 4.4 | 0.004 | 0.71 | 0.0 | 0.04 | 17.46 | 0.00 | 1.793 | 21.09 | 0.48 | 9.2 | 90.7 | 0.1 | -2.17 | 1.65 | 0.89 | 0.77 | 0.16 | 57984 | 3453 | 10 | 110 | 4 | 0 | 28609 | logfile |
✔ | 7MF3 | 23810 | 2022-05-15 | 2021-04-08 | 3.4 | 4.14 | — | 3.2 | 0.003 | 0.68 | 0.0 | 0.04 | 15.41 | 0.00 | 1.985 | 17.49 | 0.04 | 6.5 | 93.5 | 0.0 | -0.34 | 0.90 | 0.73 | 0.19 | 3.1 | 0.003 | 0.72 | 0.0 | 0.04 | 17.47 | 0.01 | 1.954 | 17.38 | 0.24 | 7.4 | 92.6 | 0.0 | -0.73 | 1.45 | 0.91 | 0.74 | 0.16 | 22938 | 2822 | 12 | 0 | 8 | 0 | 0 | logfile |
✔ | 6TZ4 | 20588 | 2022-05-17 | 2019-08-10 | 3.2 | 3.81 | 3.16 | 3.7 | 0.010 | 0.48 | 0.0 | 0.04 | 8.47 | 0.00 | 2.212 | 3.95 | 0.00 | 1.4 | 98.6 | 0.0 | -0.10 | 0.51 | 0.57 | 0.03 | 3.5 | 0.005 | 0.95 | 0.0 | 0.04 | 17.71 | 0.00 | 1.988 | 19.71 | 0.70 | 1.4 | 98.6 | 0.0 | 2.28 | 1.70 | 0.60 | 0.84 | 0.18 | 99216 | 12852 | 72 | 0 | 0 | 0 | 0 | logfile |
✔ | 6MDo | 9102 | 2022-05-17 | 2018-09-04 | 3.9 | 5.46 | — | 4.2 | 0.015 | 1.44 | 0.0 | 0.12 | 13.30 | 0.01 | 2.012 | 6.72 | 0.16 | 0.3 | 99.6 | 0.0 | -3.28 | 0.79 | 0.68 | 0.38 | 4.2 | 0.005 | 0.72 | 0.0 | 0.08 | 13.76 | 0.00 | 1.781 | 20.24 | 0.41 | 7.9 | 92.1 | 0.0 | -1.53 | 1.53 | 0.87 | 0.85 | 0.19 | 45373 | 2843 | 13 | 0 | 11 | 0 | 22858 | logfile |
✔ | 6H5i | 0140 | 2022-05-12 | 2018-07-24 | 3.9 | 3.87 | — | 23.0 | 0.006 | 0.81 | 0.0 | 0.05 | 10.47 | 0.01 | 2.196 | 2.64 | 0.17 | 4.3 | 95.7 | 0.0 | -1.74 | 0.29 | 0.06 | 0.15 | 3.8 | 0.005 | 0.83 | 0.0 | 0.04 | 15.12 | 0.01 | 1.992 | 18.45 | 0.63 | 4.7 | 95.3 | 0.0 | 0.75 | 1.92 | 0.38 | 0.26 | 0.19 | 43900 | 5392 | 26 | 0 | 0 | 0 | 0 | logfile |
✔ | 5GAK | 3227 | 2022-05-15 | 2015-12-09 | 3.88 | 4.13 | — | 19.0 | 0.006 | 0.94 | 0.0 | 0.06 | 20.85 | 0.01 | 0.816 | 23.97 | 0.26 | 9.2 | 90.2 | 0.7 | -3.81 | 0.21 | 0.02 | 0.28 | 3.8 | 0.006 | 0.94 | 3.0 | 0.05 | 19.64 | 0.01 | 1.918 | 24.95 | 0.40 | 9.8 | 89.8 | 0.4 | -2.82 | 1.75 | 0.32 | 0.23 | 0.19 | 128975 | 6434 | 50 | 3597 | 234 | 0 | 0 | logfile |