Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6Y97	10733	2022-07-03	2020-03-06	4.33	4.65	—	4.5	0.002	0.58	0.0	0.04	14.61	0.00	2.147	7.28	0.00	5.2	94.8	0.0	1.11	0.69	0.62	—	4.5	0.004	0.76	0.0	0.04	13.35	0.00	2.096	18.78	0.00	6.8	93.2	0.0	0.33	1.52	0.72	0.72	—	4366	564	4	0	0	0	0	logfile
✔	6RYR	10058	2022-07-04	2019-06-11	3.1	3.26	3.23	3.2	0.004	0.67	0.0	0.05	23.97	0.00	1.893	5.87	0.16	3.5	96.5	0.0	-0.14	0.76	0.82	2.48	3.2	0.003	0.56	0.0	0.04	26.09	0.00	2.020	8.93	0.16	3.7	96.3	0.0	0.91	0.48	0.78	0.85	2.55	17834	1451	11	298	16	0	0	logfile
✔	7JGS	22330	2022-07-05	2020-07-19	3.2	3.82	3.22	3.4	0.006	0.94	0.0	0.05	17.85	0.01	1.392	4.17	0.18	2.7	97.3	0.0	-3.49	0.86	0.87	2.76	3.4	0.005	0.65	0.0	0.04	18.66	0.00	1.824	8.80	0.36	3.1	96.9	0.0	1.51	1.06	0.87	0.90	1.99	21743	2528	13	70	8	0	0	logfile
✔	6T2C	10368	2022-07-03	2019-10-08	3.52	3.61	3.52	3.6	0.008	0.76	0.0	0.05	14.31	0.01	2.097	4.19	6.25	5.7	94.2	0.1	-3.65	0.69	0.85	2.89	3.6	0.016	1.44	1.0	0.04	16.04	0.00	1.937	8.47	0.18	3.4	96.5	0.1	-0.27	0.59	0.70	0.84	2.59	10700	1255	5	29	1	0	0	logfile
✔	7JGR	22329	2022-07-05	2020-07-19	3.9	4.26	3.87	3.9	0.006	0.95	0.0	0.05	17.55	0.01	1.799	5.68	0.36	4.1	95.9	0.0	-2.88	0.87	0.84	1.46	3.9	0.003	0.65	0.0	0.04	18.48	0.00	1.960	11.87	0.14	2.7	97.3	0.0	1.35	1.73	0.88	0.86	1.60	21717	2531	13	68	8	0	0	logfile
✔	6U7M	20673	2022-07-06	2019-09-03	3.8	4.00	—	4.0	0.004	0.78	0.0	0.05	9.33	0.01	2.321	2.88	0.27	8.3	91.7	0.0	-4.11	0.57	0.81	2.42	4.0	0.003	0.67	0.0	0.04	13.72	0.00	2.092	8.22	0.16	6.5	93.5	0.0	-1.98	2.05	0.58	0.82	2.32	99420	12510	30	0	0	0	0	logfile
✔	7JK3	22360	2022-07-05	2020-07-27	3.4	4.04	3.41	3.5	0.005	0.87	0.0	0.05	17.58	0.01	1.709	3.67	0.18	3.1	96.9	0.0	-3.87	0.89	0.87	2.19	3.5	0.002	0.58	0.0	0.04	18.19	0.00	1.985	7.30	0.05	2.7	97.3	0.0	1.50	1.32	0.90	0.89	1.82	21661	2528	13	66	8	0	0	logfile
✔	7BTF	30178	2022-07-03	2020-04-01	2.95	3.30	3.02	3.2	0.009	0.73	0.0	0.05	12.87	0.00	2.262	6.42	0.00	7.0	93.0	0.0	-2.91	0.77	0.89	4.15	3.2	0.004	0.62	0.0	0.04	15.36	0.00	2.157	5.37	2.05	4.2	95.8	0.0	-0.23	0.95	0.77	0.90	3.45	9685	1213	5	0	2	0	0	logfile
✔	6VN0	21246	2022-07-04	2020-01-29	4.25	4.57	4.28	4.5	0.018	1.73	0.0	0.09	10.70	0.01	2.270	2.06	0.15	2.9	96.5	0.6	0.70	0.74	0.78	—	4.5	0.003	0.74	0.0	0.05	12.73	0.00	2.085	12.75	0.00	7.1	92.5	0.3	-0.71	1.83	0.74	0.80	—	19962	2364	51	0	105	0	0	logfile
✔	7JK4	22361	2022-07-05	2020-07-27	3.4	3.91	3.47	3.6	0.006	0.95	0.0	0.05	17.55	0.01	2.102	4.64	0.32	4.1	95.9	0.0	-2.88	0.87	0.88	2.64	3.6	0.002	0.54	0.0	0.04	18.25	0.00	1.953	8.20	0.05	2.2	97.8	0.0	1.75	0.55	0.88	0.90	2.14	21717	2531	13	68	8	0	0	logfile
✔	6UBT	20715	2022-07-04	2019-09-12	3.55	4.09	3.43	3.8	0.007	1.51	0.0	0.08	12.82	0.01	2.274	5.92	0.31	7.1	92.9	0.0	-1.97	0.77	0.81	1.98	3.8	0.003	0.71	0.0	0.04	15.33	0.00	2.224	10.71	0.44	4.7	95.3	0.0	-0.07	1.27	0.77	0.84	1.83	14505	1770	15	0	10	0	0	logfile
✔	6WX6	21951	2022-07-04	2020-05-09	2.0	2.11	2.08	2.1	0.006	0.69	0.0	0.04	14.94	0.00	2.277	0.00	0.00	1.2	98.8	0.0	1.60	0.77	0.88	7.70	2.1	0.004	0.55	0.0	0.04	16.24	0.00	2.003	3.40	0.69	1.2	98.8	0.0	4.62	0.53	0.78	0.90	7.39	68332	4128	56	0	8	2420	32664	logfile
✔	6S2E	10088	2022-07-03	2019-06-20	4.2	4.38	4.22	4.2	0.009	1.53	0.0	0.13	14.14	0.01	2.218	7.85	1.88	4.7	95.2	0.1	-1.45	0.81	0.75	—	4.2	0.004	0.73	0.0	0.04	13.40	0.00	2.088	18.19	0.00	4.1	95.9	0.0	-0.02	1.28	0.81	0.76	—	12459	1539	4	0	1	0	0	logfile
✔	6WBM	21593	2022-07-04	2020-03-26	2.86	3.86	—	3.4	0.007	0.82	0.0	0.05	17.58	0.00	2.192	15.42	0.80	5.6	94.4	0.0	-1.44	0.70	0.82	2.99	3.5	0.004	0.61	0.0	0.04	15.18	0.00	2.204	10.20	2.33	3.6	96.4	0.0	1.86	0.97	0.70	0.87	2.65	19201	2387	14	0	42	0	0	logfile
✔	6UUN	20883	2022-07-03	2019-10-30	3.0	3.16	2.93	3.2	0.005	0.73	0.0	0.05	11.92	0.00	2.226	9.16	0.45	3.6	96.4	0.0	-1.59	0.63	0.81	3.14	3.1	0.003	0.57	0.0	0.04	15.94	0.00	2.165	8.76	2.95	2.7	97.3	0.0	0.26	1.01	0.69	0.86	3.03	8980	1202	7	0	0	0	0	logfile
✔	7JK2	22359	2022-07-05	2020-07-27	3.2	3.80	3.18	3.4	0.006	0.92	0.0	0.05	17.56	0.01	2.092	4.16	0.23	3.5	96.5	0.0	-3.50	0.85	0.86	2.35	3.4	0.005	0.64	0.0	0.04	18.26	0.00	1.835	8.63	0.32	3.4	96.6	0.0	1.46	0.62	0.86	0.89	1.98	21619	2523	13	66	8	0	0	logfile
✔	6VKN	21227	2022-07-04	2020-01-21	3.7	3.81	3.60	3.8	0.018	1.74	3.0	0.09	10.81	0.01	2.274	1.61	0.85	3.6	95.7	0.8	0.87	0.76	0.83	3.33	3.8	0.004	0.70	0.0	0.04	14.82	0.00	2.158	6.57	0.62	4.3	95.3	0.4	-0.10	1.31	0.76	0.84	2.38	20220	2394	42	0	102	0	0	logfile
✔	6Y50	10688	2022-07-04	2020-02-24	4.1	4.22	—	4.0	0.003	0.52	0.0	0.04	6.93	0.00	0.761	13.95	0.00	5.9	93.9	0.2	-3.48	0.68	0.68	—	4.0	0.004	0.67	0.0	0.05	9.54	0.00	2.003	8.78	0.00	11.0	88.9	0.1	-1.71	0.52	0.71	0.73	—	14916	2537	10	50	3	0	0	logfile
✔	6TD6	10464	2022-07-04	2019-11-07	4.76	5.03	—	4.8	0.010	1.11	0.0	0.07	16.37	0.01	1.777	55.96	0.35	22.8	76.8	0.4	-6.33	0.62	0.70	—	4.8	0.004	0.69	0.0	0.04	14.83	0.00	1.896	20.31	0.00	11.6	88.4	0.0	-1.62	1.43	0.60	0.69	—	15680	982	4	0	3	0	7766	logfile
✔	7JPR	22420	2022-07-04	2020-08-09	4.0	4.90	—	3.3	0.006	1.20	0.0	0.06	15.00	0.01	2.048	5.61	0.00	3.6	96.4	0.0	-2.74	0.82	0.68	—	3.6	0.003	0.72	0.0	0.04	16.55	0.00	1.924	17.21	0.21	3.2	96.8	0.0	0.50	0.91	0.86	0.76	—	16737	2045	8	0	6	0	0	logfile

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