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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6B44 | 7048 | 2022-05-15 | 2017-09-25 | 2.9 | 3.00 | — | 3.0 | 0.006 | 0.99 | 0.0 | 0.06 | 14.77 | 0.01 | 2.237 | 5.60 | 0.43 | 11.4 | 88.6 | 0.0 | -4.46 | 0.65 | 0.77 | 3.33 | 3.0 | 0.004 | 0.67 | 0.0 | 0.04 | 17.23 | 0.00 | 2.122 | 10.68 | 2.54 | 9.2 | 90.8 | 0.0 | -1.84 | 0.99 | 0.65 | 0.79 | 2.64 | 22681 | 2879 | 12 | 114 | 0 | 0 | 0 | logfile |
✔ | 3J5P | 5778 | 2022-05-14 | 2013-10-28 | 3.275 | 3.63 | 3.36 | 3.4 | 0.011 | 1.53 | 0.0 | 0.09 | 21.59 | 0.01 | 1.156 | 79.28 | 27.79 | 5.7 | 94.3 | 0.0 | -0.42 | 0.62 | 0.55 | 0.56 | 3.5 | 0.003 | 0.88 | 0.0 | 0.04 | 17.12 | 0.00 | 2.147 | 17.88 | 0.35 | 5.2 | 94.8 | 0.0 | 0.56 | 2.07 | 0.73 | 0.79 | 0.76 | 18636 | 2324 | 4 | 0 | 44 | 0 | 0 | logfile |
✔ | 3J9J | 5778 | 2022-05-14 | 2015-02-02 | 3.275 | 3.52 | 3.19 | 3.6 | 0.015 | 1.08 | 0.0 | 0.09 | 9.35 | 0.01 | 2.266 | 2.70 | 0.00 | 3.3 | 94.5 | 2.2 | -0.65 | 0.53 | 0.57 | 2.57 | 3.5 | 0.003 | 0.65 | 0.0 | 0.04 | 15.80 | 0.00 | 1.905 | 14.19 | 0.17 | 6.7 | 92.7 | 0.6 | 2.30 | 3.87 | 0.59 | 0.76 | 1.97 | 21068 | 1260 | 4 | 0 | 0 | 0 | 10624 | logfile |
✔ | 6B48 | 7052 | 2022-05-15 | 2017-09-25 | 3.6 | 3.85 | — | 3.9 | 0.007 | 0.98 | 1.0 | 0.06 | 11.90 | 0.01 | 2.223 | 6.15 | 0.10 | 12.1 | 87.8 | 0.1 | -4.93 | 0.73 | 0.79 | 2.55 | 3.9 | 0.008 | 0.89 | 1.0 | 0.04 | 14.63 | 0.00 | 2.145 | 12.44 | 0.36 | 8.9 | 91.1 | 0.0 | -2.09 | 1.05 | 0.73 | 0.77 | 1.71 | 22333 | 2976 | 11 | 60 | 0 | 0 | 0 | logfile |
✔ | 6Y1Z | 10673 | 2022-05-14 | 2020-02-14 | 2.82 | 3.48 | — | 3.3 | 0.006 | 0.62 | 0.0 | 0.24 | 14.03 | 0.00 | 2.325 | 3.51 | 2.49 | 2.4 | 97.6 | 0.0 | -1.37 | 0.66 | 0.79 | 2.66 | 3.3 | 0.003 | 0.87 | 0.0 | 0.12 | 16.05 | 0.00 | 2.093 | 4.80 | 2.82 | 2.2 | 97.8 | 0.0 | 1.11 | 0.56 | 0.58 | 0.72 | 2.46 | 16610 | 1930 | 10 | 0 | 35 | 0 | 0 | logfile |
✔ | 6RWB | 10037 | 2022-05-15 | 2019-06-04 | 3.25 | 3.23 | — | 3.2 | 0.006 | 0.99 | 0.0 | 0.05 | 10.24 | 0.01 | 2.253 | 4.69 | 0.36 | 9.9 | 90.1 | 0.0 | -4.08 | 0.81 | 0.80 | 2.59 | 3.1 | 0.004 | 0.67 | 0.0 | 0.04 | 15.37 | 0.00 | 2.137 | 9.82 | 0.36 | 9.1 | 90.9 | 0.0 | -0.13 | 1.29 | 0.83 | 0.85 | 2.08 | 75405 | 9365 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Ni3 | 9376 | 2022-05-14 | 2018-12-26 | 3.8 | 4.22 | — | 4.0 | 0.010 | 1.21 | 0.0 | 0.07 | 10.90 | 0.01 | 2.258 | 4.73 | 0.23 | 5.3 | 94.7 | 0.0 | -2.86 | 0.75 | 0.76 | 1.71 | 4.0 | 0.013 | 1.37 | 1.0 | 0.05 | 15.19 | 0.00 | 1.985 | 15.44 | 0.23 | 4.1 | 95.9 | 0.0 | 0.22 | 1.75 | 0.76 | 0.78 | 1.62 | 8136 | 1043 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 5KYH | 8298 | 2022-05-17 | 2016-07-21 | 4.0 | 3.99 | — | 4.2 | 0.014 | 1.82 | 0.0 | 0.11 | 11.44 | 0.01 | 1.692 | 34.34 | 3.90 | 2.5 | 96.2 | 1.3 | -0.68 | 0.47 | 0.78 | — | 4.1 | 0.003 | 0.75 | 0.0 | 0.05 | 15.12 | 0.00 | 2.070 | 10.40 | 0.35 | 5.4 | 94.6 | 0.0 | 0.13 | 1.73 | 0.47 | 0.79 | — | 38892 | 5082 | 21 | 0 | 0 | 0 | 0 | logfile |
✔ | 5G5L | 3439 | 2022-05-17 | 2016-05-26 | 4.8 | 5.08 | — | 4.8 | 0.010 | 1.38 | 14.0 | 0.09 | 16.60 | 0.01 | 0.675 | 31.29 | 7.76 | 6.0 | 92.2 | 1.8 | -2.38 | 0.81 | 0.71 | — | 4.8 | 0.003 | 0.73 | 0.0 | 0.04 | 13.45 | 0.00 | 2.016 | 17.49 | 0.00 | 4.2 | 95.8 | 0.1 | 0.33 | 3.24 | 0.85 | 0.83 | — | 37349 | 4686 | 20 | 0 | 7 | 0 | 0 | logfile |
✔ | 6N4B | 0339 | 2022-05-12 | 2018-11-18 | 3.0 | 3.84 | — | 3.8 | 0.011 | 1.40 | 4.0 | 0.09 | 9.55 | 0.01 | 1.855 | 20.29 | 0.84 | 2.7 | 97.3 | 0.0 | -2.27 | 0.55 | 0.81 | 3.06 | 3.8 | 0.003 | 0.64 | 0.0 | 0.04 | 14.74 | 0.00 | 2.206 | 6.64 | 1.68 | 3.0 | 97.0 | 0.0 | -0.30 | 0.64 | 0.53 | 0.81 | 2.65 | 8453 | 1121 | 6 | 0 | 3 | 0 | 0 | logfile |
✔ | 6V38 | 21029 | 2022-05-16 | 2019-11-25 | 3.8 | 3.97 | — | 3.8 | 0.014 | 1.47 | 0.0 | 0.07 | 18.17 | 0.02 | 2.255 | 15.24 | 4.55 | 5.3 | 94.7 | 0.0 | -2.89 | 0.66 | 0.79 | 1.16 | 3.8 | 0.003 | 0.60 | 0.0 | 0.04 | 16.13 | 0.00 | 2.222 | 12.41 | 0.13 | 4.4 | 95.6 | 0.0 | -0.39 | 0.65 | 0.66 | 0.80 | 0.93 | 29152 | 3496 | 8 | 0 | 56 | 0 | 0 | logfile |
✔ | 6SJF | 10216 | 2022-05-15 | 2019-08-13 | 3.9 | 4.09 | — | 3.9 | 0.003 | 0.57 | 0.0 | 0.04 | 13.04 | 0.01 | 2.307 | 4.48 | 2.98 | 2.0 | 98.0 | 0.0 | -3.64 | 0.83 | 0.78 | 1.33 | 3.9 | 0.004 | 0.72 | 0.0 | 0.04 | 16.45 | 0.00 | 2.113 | 15.35 | 0.29 | 3.5 | 96.5 | 0.0 | 0.58 | 0.96 | 0.85 | 0.83 | 1.19 | 23826 | 2847 | 4 | 54 | 0 | 0 | 0 | logfile |
✔ | 5X6o | 6708 | 2022-05-14 | 2017-02-22 | 3.9 | 4.03 | — | 3.9 | 0.007 | 1.01 | 4.0 | 0.06 | 11.26 | 0.00 | 1.863 | 21.14 | 1.64 | 15.8 | 82.1 | 2.2 | -5.44 | 0.60 | 0.72 | 1.68 | 3.9 | 0.009 | 1.01 | 1.0 | 0.04 | 14.78 | 0.00 | 2.185 | 10.83 | 0.29 | 8.2 | 90.4 | 1.3 | -0.84 | 0.80 | 0.61 | 0.76 | 0.82 | 19309 | 2701 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SJE | 10215 | 2022-05-15 | 2019-08-13 | 4.1 | 4.27 | — | 4.1 | 0.003 | 0.59 | 0.0 | 0.04 | 13.69 | 0.01 | 2.264 | 4.44 | 3.06 | 2.1 | 97.9 | 0.0 | -3.60 | 0.82 | 0.77 | — | 4.0 | 0.005 | 0.71 | 0.0 | 0.04 | 15.39 | 0.00 | 2.064 | 17.00 | 0.00 | 4.2 | 95.8 | 0.0 | 0.29 | 2.07 | 0.85 | 0.82 | — | 24115 | 2847 | 4 | 68 | 0 | 0 | 0 | logfile |
✔ | 6SJG | 10217 | 2022-05-15 | 2019-08-13 | 3.8 | 3.98 | — | 3.8 | 0.003 | 0.56 | 0.0 | 0.04 | 12.74 | 0.01 | 2.294 | 4.31 | 2.90 | 2.2 | 97.8 | 0.0 | -3.61 | 0.81 | 0.73 | 1.24 | 3.8 | 0.006 | 0.83 | 0.0 | 0.04 | 16.24 | 0.00 | 1.679 | 17.12 | 0.12 | 3.7 | 96.3 | 0.0 | 0.21 | 1.45 | 0.84 | 0.79 | 1.27 | 23826 | 2847 | 4 | 54 | 0 | 0 | 0 | logfile |
✔ | 5JLF | 8163 | 2022-05-14 | 2016-04-27 | 3.6 | 3.82 | — | 3.7 | 0.013 | 1.58 | 17.0 | 0.11 | 12.21 | 0.01 | 2.184 | 9.01 | 1.29 | 2.9 | 96.6 | 0.6 | -0.70 | 0.64 | 0.74 | 2.52 | 3.7 | 0.003 | 0.74 | 0.0 | 0.04 | 15.30 | 0.00 | 1.990 | 11.16 | 0.71 | 3.8 | 96.0 | 0.3 | 0.19 | 1.43 | 0.68 | 0.83 | 1.61 | 15800 | 1835 | 12 | 0 | 280 | 0 | 0 | logfile |
✔ | 6EE8 | 9039 | 2022-05-16 | 2018-08-13 | 3.92 | 4.56 | — | 4.0 | 0.007 | 1.04 | 2.0 | 0.06 | 15.74 | 0.01 | 2.082 | 7.92 | 0.65 | 6.5 | 93.4 | 0.1 | -3.18 | 0.89 | 0.86 | 1.12 | 4.0 | 0.003 | 0.69 | 0.0 | 0.04 | 16.82 | 0.00 | 1.980 | 13.03 | 0.21 | 5.6 | 94.4 | 0.0 | 0.07 | 1.42 | 0.90 | 0.87 | 0.99 | 29784 | 3508 | 11 | 125 | 3 | 0 | 0 | logfile |
✔ | 6V35 | 21028 | 2022-05-17 | 2019-11-25 | 3.5 | 3.83 | — | 3.7 | 0.011 | 1.23 | 4.0 | 0.07 | 12.70 | 0.01 | 2.296 | 10.11 | 0.81 | 7.0 | 93.0 | 0.0 | -3.13 | 0.68 | 0.82 | 2.47 | 3.7 | 0.003 | 0.68 | 0.0 | 0.04 | 14.90 | 0.00 | 2.164 | 12.59 | 0.20 | 4.3 | 95.7 | 0.0 | -0.40 | 0.80 | 0.68 | 0.82 | 2.53 | 36488 | 4448 | 16 | 0 | 56 | 0 | 0 | logfile |
✔ | 6HRB | 0258 | 2022-05-13 | 2018-09-26 | 4.0 | 4.20 | 3.96 | 4.0 | 0.008 | 0.96 | 0.0 | 0.05 | 9.28 | 0.01 | 2.186 | 6.75 | 0.26 | 7.2 | 92.8 | 0.0 | -4.97 | 0.74 | 0.84 | — | 4.0 | 0.003 | 0.76 | 0.0 | 0.04 | 13.56 | 0.00 | 2.132 | 15.05 | 0.18 | 4.3 | 95.7 | 0.0 | -0.40 | 1.27 | 0.74 | 0.84 | — | 10787 | 1447 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 6PWo | 20509 | 2022-05-13 | 2019-07-23 | 3.4 | 4.35 | 3.45 | 4.0 | 0.005 | 0.61 | 0.0 | 0.05 | 13.33 | 0.00 | 2.407 | 5.49 | 0.46 | 2.7 | 97.3 | 0.0 | -0.76 | 0.80 | 0.85 | 1.87 | 4.0 | 0.003 | 0.58 | 0.0 | 0.04 | 14.49 | 0.00 | 2.285 | 5.73 | 0.13 | 2.3 | 97.7 | 0.0 | 2.54 | 1.25 | 0.81 | 0.87 | 1.76 | 14217 | 1862 | 7 | 0 | 0 | 0 | 0 | logfile |