Table showing results for June 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7A6E	11671	2021-06-02	2020-08-25	3.6	2.83	—	3.6	0.045	1.02	0.0	0.23	13.44	0.01	1.357	23.64	1.72	5.3	94.7	0.0	-2.92	0.57	0.73	1.42	3.6	0.005	0.82	0.0	0.04	15.62	0.00	2.162	15.71	0.15	4.5	95.5	0.0	0.34	1.40	0.59	0.76	1.49	12757	1596	4	0	13	0	0	logfile
✔	7A69	11667	2021-06-02	2020-08-25	3.2	3.36	—	3.3	0.043	1.16	0.0	0.25	14.39	0.01	2.042	11.63	4.42	4.7	95.2	0.1	-2.83	0.63	0.76	2.19	3.3	0.006	0.91	0.0	0.07	15.78	0.00	1.995	13.18	0.37	4.7	95.3	0.0	0.33	1.91	0.67	0.83	2.05	12637	1596	4	0	9	0	0	logfile
✔	6ZKB	11243	2021-06-04	2020-06-30	2.9	3.24	—	3.2	0.009	1.06	0.0	0.22	11.28	0.01	2.219	5.08	0.05	3.4	96.5	0.0	-3.03	0.67	0.86	4.97	3.2	0.003	0.64	0.0	0.04	16.15	0.00	2.053	11.44	1.81	2.7	97.3	0.0	1.37	1.71	0.74	0.88	3.75	39924	4703	72	0	25	446	0	logfile
✔	7L3N	23156	2021-06-03	2020-12-18	3.27	3.85	3.38	3.5	0.005	0.74	0.0	0.05	13.29	0.01	2.041	9.73	0.04	5.0	95.0	0.0	-0.76	0.75	0.70	0.74	3.6	0.003	0.64	0.0	0.05	15.05	0.00	2.116	10.28	0.19	2.7	97.3	0.0	0.46	0.94	0.81	0.84	2.19	24118	3056	11	0	22	0	0	logfile
✔	7LAA	23246	2021-06-05	2021-01-06	3.42	3.63	3.49	3.6	0.013	1.92	9.0	0.10	13.69	0.01	2.524	0.34	1.87	7.0	92.5	0.5	-2.08	0.66	0.70	2.85	3.6	0.006	0.73	0.0	0.05	14.83	0.00	1.814	10.52	0.40	8.6	91.4	0.0	-1.51	0.87	0.68	0.75	2.32	45934	3002	25	0	57	0	22222	logfile
✔	7K19	22622	2021-06-03	2020-09-07	4.3	4.44	—	4.3	0.006	1.10	1.0	0.06	17.53	0.01	2.038	8.49	0.65	12.7	87.0	0.3	-4.91	0.79	0.77	—	4.3	0.003	0.72	0.0	0.04	16.05	0.00	2.136	11.14	0.03	10.6	89.4	0.0	-1.24	0.68	0.78	0.75	—	29158	3569	4	48	0	0	0	logfile
✔	6ZLV	11275	2021-06-01	2020-07-01	3.5	3.60	—	3.5	0.011	1.86	4.0	0.12	12.22	0.01	2.221	18.63	2.72	3.7	95.7	0.6	-1.53	0.54	0.79	1.09	3.5	0.004	0.78	0.0	0.05	16.30	0.00	2.187	14.76	0.17	2.4	97.6	0.0	-0.26	1.11	0.55	0.78	1.74	5352	704	4	0	0	0	0	logfile
✔	7D61	30587	2021-06-03	2020-09-28	2.8	2.98	—	3.0	0.003	0.77	0.0	0.04	16.47	0.01	2.340	1.83	0.00	2.4	97.6	0.0	-7.13	0.69	0.82	2.59	3.0	0.004	0.65	0.0	0.04	17.87	0.00	2.239	3.93	2.08	2.0	98.0	0.0	-0.14	0.55	0.71	0.84	1.35	26664	3168	22	0	55	0	0	logfile
✔	6ZH8	11216	2021-06-03	2020-06-21	4.14	6.50	4.33	4.2	0.005	0.77	0.0	0.04	15.29	0.00	2.198	27.27	0.03	10.6	89.3	0.0	-1.45	0.91	0.85	—	4.2	0.002	0.65	0.0	0.04	15.30	0.00	2.144	14.31	0.00	6.8	93.2	0.0	0.35	1.14	0.90	0.84	—	29506	3668	3	19	26	0	0	logfile
✔	7KWo	23057	2021-06-02	2020-12-01	2.9	3.38	2.90	2.9	0.004	0.57	0.0	0.05	9.83	0.00	2.043	7.86	0.13	3.1	96.9	0.0	-0.41	0.79	0.74	3.18	3.0	0.004	0.62	0.0	0.04	13.10	0.00	2.060	11.26	1.28	4.3	95.7	0.0	-0.44	0.59	0.85	0.82	3.03	13469	1678	5	0	10	0	0	logfile
✔	6ZHA	11217	2021-06-04	2020-06-21	3.91	4.83	4.03	4.0	0.008	0.89	1.0	0.05	15.72	0.01	2.183	25.15	0.10	9.6	90.2	0.2	-2.01	0.90	0.86	1.07	4.0	0.003	0.69	0.0	0.04	16.80	0.00	2.167	14.98	0.15	6.7	93.3	0.0	-0.19	0.42	0.90	0.86	0.96	38289	4707	5	49	28	0	0	logfile
✔	7D59	30578	2021-06-04	2020-09-25	3.1	3.84	—	3.5	0.002	0.61	0.0	0.54	14.30	0.00	2.196	7.52	0.00	4.5	95.4	0.1	-3.52	0.85	0.79	0.90	3.5	0.005	1.08	0.0	0.17	16.47	0.00	2.053	10.51	0.23	5.4	94.6	0.0	-0.92	1.42	0.88	0.86	1.53	39898	5010	23	0	8	0	0	logfile
✔	7LKP	23409	2021-06-02	2021-02-02	3.27	3.86	—	3.8	0.034	1.12	0.0	0.18	17.41	0.01	1.954	19.87	0.60	5.7	94.3	0.1	-0.89	0.62	0.74	1.42	3.8	0.004	0.72	0.0	0.04	17.98	0.00	2.142	11.90	0.42	4.5	95.4	0.1	0.17	1.20	0.73	0.82	1.97	15789	1941	4	0	29	0	0	logfile
✔	7BH9	12187	2021-06-01	2021-01-11	2.9	3.58	2.91	3.4	0.007	0.76	0.0	0.05	13.23	0.00	2.021	5.17	0.33	4.9	95.1	0.0	-3.10	0.85	0.88	3.70	3.5	0.002	0.52	0.0	0.04	15.07	0.00	2.185	4.03	0.66	1.4	98.6	0.0	0.85	0.69	0.82	0.85	2.47	5876	730	3	0	4	0	0	logfile
✔	6YW5	10958	2021-06-06	2020-04-29	2.85	2.95	2.83	2.9	0.002	0.37	0.0	0.03	10.00	0.00	1.841	2.48	0.14	1.6	98.4	0.0	-2.99	0.73	0.86	5.10	2.9	0.002	0.50	0.0	0.03	14.07	0.00	1.906	4.32	0.69	2.3	97.7	0.0	1.35	0.64	0.73	0.88	3.94	167548	7528	47	1435	120	0	76656	logfile
✔	7K0o	22605	2021-06-02	2020-09-04	3.1	3.53	—	3.5	0.006	0.80	0.0	0.05	13.66	0.00	2.161	5.84	0.21	2.6	97.4	0.0	0.95	0.70	0.82	3.00	3.5	0.003	0.55	0.0	0.04	14.83	0.00	2.186	5.84	0.26	2.6	97.4	0.0	1.40	1.07	0.67	0.81	3.00	18558	2342	14	0	14	0	0	logfile
✔	6YWS	10973	2021-06-05	2020-04-30	2.74	2.83	2.70	2.8	0.016	0.47	0.0	0.03	12.70	0.00	1.426	1.42	0.20	1.7	98.3	0.0	-2.78	0.76	0.86	4.39	2.8	0.004	0.57	1.0	0.04	14.67	0.00	1.829	3.81	1.16	2.2	97.8	0.0	0.58	1.21	0.76	0.87	4.06	223349	8200	51	2820	179	0	97470	logfile
✔	7K0P	22606	2021-06-02	2020-09-04	3.1	3.68	—	3.6	0.006	0.77	0.0	0.04	14.41	0.00	2.183	5.21	0.00	2.5	97.5	0.0	0.92	0.69	0.82	3.20	3.6	0.002	0.48	0.0	0.04	15.17	0.00	2.165	5.19	0.21	2.0	98.0	0.0	1.57	0.31	0.68	0.82	2.59	18572	2342	14	0	15	0	0	logfile
✔	7K0M	22602	2021-06-02	2020-09-04	2.9	3.38	—	3.3	0.005	0.74	0.0	0.04	13.68	0.00	2.218	4.67	0.00	2.3	97.7	0.0	1.05	0.62	0.79	3.49	3.3	0.002	0.45	0.0	0.04	15.15	0.00	2.208	5.29	0.93	1.7	98.3	0.0	1.50	0.40	0.63	0.80	2.92	18578	2342	14	0	16	0	0	logfile
✔	7CM6	30402	2021-06-04	2020-07-25	3.0	2.48	—	3.0	0.093	1.82	0.0	0.05	10.57	0.01	1.418	3.06	0.00	3.6	96.4	0.0	-4.13	0.72	0.74	2.21	3.0	0.003	0.97	0.0	0.04	15.90	0.00	2.231	6.55	1.62	2.2	97.8	0.0	1.38	0.91	0.79	0.85	1.95	38680	4888	16	0	8	0	0	logfile

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