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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6NYG | 0543 | 2023-04-26 | 2019-02-11 | 3.9 | 4.55 | — | 3.9 | 0.005 | 0.97 | 0.0 | 0.06 | 10.45 | 0.00 | 2.242 | 9.18 | 0.16 | 14.1 | 85.9 | 0.0 | -4.66 | 0.82 | 0.64 | 0.83 | 3.9 | 0.003 | 0.73 | 0.0 | 0.05 | 13.61 | 0.00 | 2.093 | 18.96 | 0.18 | 11.3 | 88.7 | 0.0 | -3.94 | 1.29 | 0.83 | 0.68 | 0.96 | 68664 | 9000 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NYL | 0545 | 2023-04-26 | 2019-02-11 | 3.7 | 4.50 | — | 4.1 | 0.008 | 1.14 | 0.0 | 0.06 | 11.10 | 0.01 | 2.233 | 10.38 | 0.97 | 16.1 | 83.9 | 0.0 | -5.60 | 0.87 | 0.74 | 2.26 | 4.1 | 0.005 | 0.81 | 0.0 | 0.05 | 12.87 | 0.00 | 2.133 | 25.47 | 0.31 | 20.1 | 79.9 | 0.0 | -4.78 | 0.53 | 0.87 | 0.74 | 1.84 | 68664 | 9000 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NYJ | 0544 | 2023-04-26 | 2019-02-11 | 3.2 | 3.93 | — | 3.8 | 0.008 | 1.06 | 0.0 | 0.06 | 10.60 | 0.01 | 2.247 | 7.25 | 0.54 | 15.2 | 84.8 | 0.0 | -5.28 | 0.82 | 0.77 | 3.30 | 3.8 | 0.007 | 0.80 | 0.0 | 0.05 | 12.81 | 0.00 | 2.204 | 15.43 | 0.38 | 18.1 | 81.9 | 0.0 | -4.31 | 0.58 | 0.83 | 0.79 | 3.08 | 68664 | 9000 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PHR | 13427 | 2023-04-22 | 2021-08-18 | 3.08 | 3.38 | — | 3.4 | 0.006 | 0.77 | 0.0 | 0.05 | 12.63 | 0.00 | 2.475 | 5.22 | 0.08 | 2.6 | 97.4 | 0.0 | -0.08 | 0.66 | 0.79 | 3.56 | 3.4 | 0.003 | 0.49 | 0.0 | 0.04 | 14.68 | 0.00 | 2.217 | 6.19 | 0.32 | 2.7 | 97.3 | 0.0 | 0.82 | 0.40 | 0.66 | 0.81 | 3.26 | 11511 | 1443 | 14 | 0 | 6 | 0 | 0 | logfile |
✔ | 6NYM | 0546 | 2023-04-26 | 2019-02-11 | 3.6 | 4.42 | — | 4.1 | 0.005 | 0.94 | 0.0 | 0.06 | 10.43 | 0.00 | 2.260 | 8.20 | 0.32 | 12.6 | 87.4 | 0.0 | -5.10 | 0.87 | 0.78 | 2.54 | 4.1 | 0.007 | 0.83 | 0.0 | 0.05 | 12.88 | 0.00 | 2.133 | 18.95 | 0.35 | 20.3 | 79.7 | 0.0 | -4.50 | 1.20 | 0.88 | 0.80 | 2.49 | 68664 | 9000 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7W94 | 32360 | 2023-04-27 | 2021-12-09 | 3.4 | 3.02 | — | 3.6 | 0.003 | 0.67 | 0.0 | 0.05 | 13.57 | 0.01 | 2.288 | 3.37 | 0.14 | 3.4 | 96.6 | 0.0 | -4.24 | 0.78 | 0.74 | 1.49 | 3.5 | 0.005 | 0.76 | 0.0 | 0.05 | 16.33 | 0.00 | 2.055 | 14.42 | 0.57 | 6.9 | 93.1 | 0.0 | -1.66 | 0.73 | 0.80 | 0.79 | 1.58 | 25082 | 3206 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 5ND1 | 3619 | 2023-04-23 | 2017-03-07 | 3.7 | 3.86 | — | 3.9 | 0.017 | 2.27 | 54.0 | 0.15 | 22.44 | 0.01 | 0.204 | 100.40 | 32.66 | 7.8 | 89.7 | 2.5 | -2.95 | 0.47 | 0.82 | 1.08 | 3.9 | 0.005 | 0.84 | 0.0 | 0.04 | 18.26 | 0.00 | 2.091 | 15.15 | 0.95 | 9.3 | 90.2 | 0.5 | -1.95 | 1.59 | 0.48 | 0.83 | 1.01 | 14963 | 1977 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7USY | 26743 | 2023-04-24 | 2022-04-26 | 3.54 | 3.90 | 3.64 | 3.9 | 0.004 | 0.78 | 0.0 | 0.04 | 16.48 | 0.01 | 1.415 | 8.72 | 0.28 | 3.0 | 97.0 | 0.0 | 1.55 | 0.56 | 0.69 | 0.66 | 3.8 | 0.003 | 0.55 | 0.0 | 0.04 | 16.83 | 0.00 | 2.189 | 8.51 | 0.57 | 2.8 | 97.2 | 0.0 | 1.62 | 0.42 | 0.55 | 0.66 | 0.73 | 16582 | 2025 | 13 | 0 | 16 | 0 | 0 | logfile |
✔ | 7K0L | 22601 | 2023-04-20 | 2020-09-04 | 3.4 | 3.83 | — | 3.7 | 0.004 | 0.60 | 0.0 | 0.04 | 12.59 | 0.00 | 2.141 | 4.28 | 0.00 | 1.9 | 98.1 | 0.0 | 1.09 | 0.74 | 0.87 | 3.05 | 3.7 | 0.003 | 0.49 | 0.0 | 0.04 | 13.87 | 0.00 | 2.212 | 5.13 | 0.12 | 2.0 | 98.0 | 0.0 | 1.07 | 1.04 | 0.75 | 0.88 | 2.70 | 7619 | 964 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7KS9 | 23016 | 2023-04-27 | 2020-11-21 | 4.75 | 5.64 | 4.96 | 4.9 | 0.005 | 0.80 | 0.0 | 0.05 | 11.85 | 0.01 | 2.222 | 3.57 | 0.07 | 1.9 | 98.1 | 0.0 | -0.64 | 0.82 | 0.74 | — | 4.8 | 0.002 | 0.60 | 0.0 | 0.04 | 12.09 | 0.00 | 2.090 | 11.72 | 0.00 | 3.0 | 97.0 | 0.0 | 0.26 | 0.70 | 0.84 | 0.79 | — | 25380 | 3189 | 20 | 0 | 59 | 0 | 0 | logfile |
✔ | 7PGS | 13394 | 2023-04-24 | 2021-08-15 | 3.4 | 3.61 | 3.34 | 3.4 | 0.002 | 0.40 | 0.0 | 0.03 | 10.77 | 0.00 | 1.972 | 3.57 | 0.66 | 1.2 | 98.8 | 0.0 | -0.33 | 0.80 | 0.79 | 2.03 | 3.4 | 0.003 | 0.54 | 0.0 | 0.03 | 13.21 | 0.00 | 1.871 | 6.13 | 0.08 | 3.3 | 96.7 | 0.0 | 1.64 | 0.74 | 0.82 | 0.81 | 1.41 | 67202 | 4210 | 2 | 0 | 1 | 0 | 33807 | logfile |
✔ | 8D0B | 27104 | 2023-04-29 | 2022-05-26 | 3.43 | 4.09 | 3.52 | 2.2 | 0.002 | 0.48 | 0.0 | 0.04 | 15.42 | 0.00 | 2.167 | 5.43 | 0.06 | 3.1 | 96.9 | 0.0 | 1.19 | 0.87 | 0.83 | 1.67 | 2.2 | 0.006 | 0.58 | 0.0 | 0.04 | 15.99 | 0.00 | 2.165 | 6.57 | 0.09 | 4.9 | 95.1 | 0.0 | 1.08 | 0.20 | 0.88 | 0.84 | 1.81 | 29367 | 3630 | 8 | 15 | 0 | 0 | 0 | logfile |
✔ | 7V80 | 31785 | 2023-04-20 | 2021-08-22 | 3.9 | 4.10 | — | 4.0 | 0.004 | 0.65 | 0.0 | 0.05 | 15.00 | 0.00 | 2.120 | 8.76 | 0.00 | 6.2 | 93.8 | 0.0 | -0.76 | 0.65 | 0.72 | 1.58 | 4.0 | 0.003 | 0.71 | 0.0 | 0.05 | 16.57 | 0.00 | 2.129 | 11.63 | 0.43 | 6.1 | 93.9 | 0.0 | -0.41 | 1.17 | 0.67 | 0.76 | 1.33 | 6609 | 797 | 7 | 0 | 11 | 0 | 0 | logfile |
✔ | 7NA7 | 24267 | 2023-04-21 | 2021-06-20 | 2.7 | 2.07 | — | 2.0 | 0.006 | 1.04 | 5.0 | 0.22 | 12.93 | 0.01 | 2.178 | 7.05 | 0.61 | 1.6 | 98.4 | 0.0 | 0.32 | 0.76 | 0.75 | 3.53 | 1.9 | 0.004 | 0.79 | 0.0 | 0.07 | 15.85 | 0.00 | 2.129 | 9.26 | 2.34 | 2.5 | 97.5 | 0.0 | 0.49 | 0.54 | 0.81 | 0.82 | 3.65 | 9036 | 1142 | 7 | 0 | 2 | 0 | 0 | logfile |
✔ | 7RFP | 24444 | 2023-04-20 | 2021-07-14 | 4.4 | 4.57 | — | 4.3 | 0.014 | 2.06 | 8.0 | 0.12 | 7.12 | 0.01 | 1.581 | 3.60 | 8.00 | 9.5 | 87.5 | 3.0 | -1.46 | 0.68 | 0.61 | — | 4.3 | 0.004 | 0.92 | 0.0 | 0.04 | 7.02 | 0.00 | 2.177 | 9.44 | 0.00 | 14.9 | 84.6 | 0.5 | -3.98 | 1.49 | 0.80 | 0.75 | — | 5532 | 1114 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6LUM | 0981 | 2023-04-27 | 2020-01-29 | 2.84 | 3.26 | 2.90 | 3.2 | 0.038 | 1.83 | 0.0 | 0.23 | 15.91 | 0.02 | 2.061 | 11.36 | 1.72 | 9.8 | 90.1 | 0.2 | -3.41 | 0.72 | 0.84 | 3.29 | 3.2 | 0.004 | 1.10 | 0.0 | 0.06 | 16.63 | 0.00 | 1.795 | 9.30 | 1.95 | 7.0 | 93.0 | 0.0 | -0.61 | 0.47 | 0.65 | 0.86 | 2.91 | 26191 | 3178 | 28 | 0 | 39 | 0 | 0 | logfile |
✔ | 7V76 | 31760 | 2023-04-27 | 2021-08-21 | 3.2 | 3.71 | — | 3.6 | 0.004 | 0.58 | 0.0 | 0.05 | 13.70 | 0.00 | 2.164 | 6.14 | 0.00 | 4.5 | 95.5 | 0.0 | 0.02 | 0.78 | 0.80 | 2.16 | 3.6 | 0.004 | 0.59 | 0.0 | 0.05 | 15.16 | 0.00 | 2.082 | 6.48 | 0.22 | 5.1 | 94.9 | 0.1 | -0.10 | 0.34 | 0.80 | 0.84 | 2.03 | 25219 | 3088 | 37 | 0 | 77 | 0 | 0 | logfile |
✔ | 7V78 | 31762 | 2023-04-27 | 2021-08-21 | 3.4 | 3.85 | — | 3.7 | 0.005 | 0.63 | 0.0 | 0.05 | 13.65 | 0.00 | 2.142 | 6.37 | 0.00 | 5.4 | 94.5 | 0.1 | -0.20 | 0.74 | 0.77 | 2.64 | 3.7 | 0.008 | 0.73 | 0.0 | 0.05 | 15.13 | 0.00 | 2.107 | 7.37 | 0.44 | 6.4 | 93.5 | 0.1 | -0.70 | 0.36 | 0.79 | 0.84 | 2.48 | 25677 | 3123 | 41 | 0 | 90 | 0 | 0 | logfile |
✔ | 7EDF | 31069 | 2023-04-27 | 2021-03-16 | 3.2 | 3.77 | — | 3.7 | 0.004 | 0.71 | 0.0 | 0.05 | 13.72 | 0.00 | 2.069 | 6.73 | 0.26 | 5.9 | 93.9 | 0.2 | -0.89 | 0.78 | 0.79 | 2.36 | 3.7 | 0.005 | 0.67 | 0.0 | 0.05 | 15.15 | 0.00 | 2.102 | 6.35 | 0.34 | 6.8 | 93.1 | 0.2 | -0.83 | 0.38 | 0.77 | 0.81 | 1.96 | 25090 | 3065 | 39 | 0 | 82 | 0 | 0 | logfile |
✔ | 6YG8 | 10799 | 2023-04-27 | 2020-03-27 | 3.0 | 3.39 | — | 3.2 | 0.005 | 0.60 | 0.0 | 0.05 | 11.98 | 0.00 | 2.166 | 6.88 | 0.00 | 4.7 | 95.3 | 0.0 | -3.49 | 0.83 | 0.86 | 3.96 | 3.3 | 0.004 | 0.61 | 0.0 | 0.05 | 14.33 | 0.00 | 2.167 | 7.56 | 1.77 | 4.2 | 95.8 | 0.0 | -0.38 | 1.12 | 0.84 | 0.88 | 3.42 | 24330 | 3132 | 5 | 0 | 0 | 0 | 0 | logfile |