Table showing results for September 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5W9i	8784	2021-09-05	2017-06-23	3.6	3.72	3.67	3.7	0.013	1.71	0.0	0.09	11.10	0.01	1.682	4.66	0.16	4.2	95.0	0.9	1.42	0.74	0.79	2.59	3.6	0.003	0.73	0.0	0.04	14.72	0.00	2.155	8.15	0.33	5.5	94.2	0.3	0.41	0.84	0.76	0.82	1.99	28896	3618	18	0	63	0	0	logfile
✔	5W9K	8786	2021-09-05	2017-06-23	4.6	4.70	4.66	4.6	0.013	1.75	2.0	0.08	10.40	0.01	1.342	4.22	0.14	3.7	95.7	0.6	1.72	0.72	0.74	—	4.6	0.003	0.69	0.0	0.04	12.50	0.00	2.123	12.42	0.00	5.6	94.3	0.2	0.22	1.46	0.73	0.77	—	32873	4244	12	0	0	0	0	logfile
✔	6G8Z	4362	2021-09-03	2018-04-10	3.66	3.88	3.72	3.8	0.005	0.77	0.0	0.04	8.70	0.00	2.362	0.22	0.00	3.8	96.2	0.0	-0.63	0.66	0.79	4.14	3.8	0.005	0.62	0.0	0.04	13.49	0.00	2.169	5.80	0.23	3.5	96.5	0.0	2.24	1.28	0.72	0.86	2.76	15966	1908	6	0	0	0	0	logfile
✔	6R92	4766	2021-09-06	2019-04-02	4.8	6.24	—	5.4	0.009	1.11	6.0	0.09	23.81	0.01	2.054	4.26	0.36	5.0	94.7	0.4	-1.02	0.87	0.72	—	5.4	0.005	0.71	0.0	0.06	24.67	0.00	1.892	20.85	0.00	9.0	90.9	0.1	-1.63	1.46	0.88	0.75	—	40519	1974	12	288	2	0	19019	logfile
✔	6E2R	8969	2021-09-05	2018-07-12	2.8	2.92	—	2.9	0.016	0.92	0.0	0.06	14.23	0.01	2.216	2.61	4.65	3.3	96.7	0.0	-3.68	0.72	0.85	5.02	2.9	0.003	0.62	0.0	0.04	14.99	0.00	2.115	3.40	1.09	2.5	97.5	0.0	-1.33	1.30	0.74	0.87	5.04	183180	11340	60	0	0	0	90180	logfile
✔	6o1V	0606	2021-09-03	2019-02-21	3.2	3.50	—	3.6	0.016	1.83	0.0	0.21	13.60	0.01	1.933	6.26	0.48	4.7	95.3	0.0	-2.71	0.46	0.70	3.04	3.6	0.003	0.71	0.0	0.07	16.34	0.00	1.988	7.94	0.19	2.1	97.9	0.0	0.73	0.77	0.60	0.83	2.58	9711	1179	3	0	28	0	0	logfile
✔	5FYW	3378	2021-09-06	2016-03-10	4.35	4.82	—	4.3	0.010	1.14	2.0	0.07	12.79	0.01	0.245	16.78	0.77	5.4	94.1	0.5	-2.84	0.80	0.75	—	4.3	0.004	0.72	0.0	0.04	14.50	0.00	2.008	19.44	0.00	5.6	94.2	0.2	0.39	1.75	0.83	0.81	—	41710	5176	30	94	11	0	0	logfile
✔	6UKJ	20806	2021-09-02	2019-10-05	3.3	3.53	3.32	3.4	0.017	1.38	0.0	0.19	14.30	0.01	2.114	6.29	0.79	4.5	95.1	0.3	-3.21	0.62	0.81	3.08	3.4	0.003	0.66	0.0	0.04	16.03	0.00	2.115	13.02	0.40	4.0	96.0	0.0	0.30	1.54	0.65	0.82	2.31	4625	582	4	0	1	0	0	logfile
✔	5WJ9	8841	2021-09-03	2017-07-21	3.49	4.12	—	3.9	0.014	1.23	4.0	0.07	15.02	0.01	2.225	4.08	1.93	9.1	90.7	0.3	-3.89	0.59	0.69	2.66	4.0	0.003	0.86	0.0	0.04	16.58	0.00	2.200	17.55	0.59	5.8	94.2	0.1	-0.61	1.51	0.65	0.79	1.65	15540	1916	8	0	4	0	0	logfile
✔	6H3J	0134	2021-09-04	2018-07-18	3.7	3.83	—	3.7	0.007	0.87	0.0	0.05	10.17	0.00	2.025	43.22	0.05	23.8	76.2	0.0	-6.63	0.77	0.85	3.89	3.7	0.002	0.59	0.0	0.04	13.50	0.00	1.935	54.13	0.23	16.1	83.9	0.0	-5.01	2.69	0.77	0.85	2.73	20301	2511	3	0	0	0	212	logfile
✔	6DZY	8942	2021-09-02	2018-07-05	4.1	4.52	4.39	4.6	0.008	0.95	4.0	0.08	8.53	0.01	1.386	8.88	1.32	4.7	95.2	0.1	-2.99	0.42	0.61	—	4.5	0.003	0.82	0.0	0.04	13.26	0.00	2.174	16.41	0.00	5.5	94.4	0.1	-0.25	1.93	0.45	0.69	—	7842	988	5	0	4	0	0	logfile
✔	6DRK	8901	2021-09-05	2018-06-12	3.8	4.29	—	4.2	0.010	1.18	4.0	0.07	9.74	0.01	2.150	5.77	0.36	5.9	94.1	0.0	-3.07	0.64	0.74	1.96	4.2	0.004	0.69	0.0	0.04	13.46	0.00	2.233	5.41	1.02	6.7	93.3	0.0	0.56	1.47	0.66	0.78	0.93	33120	5060	4	0	0	0	0	logfile
✔	5W9J	8785	2021-09-05	2017-06-23	4.8	4.91	5.09	4.7	0.013	1.58	0.0	0.07	11.98	0.02	1.881	5.22	0.90	4.0	94.8	1.2	0.53	0.78	0.75	—	4.7	0.003	0.67	0.0	0.04	12.52	0.00	2.158	12.22	0.00	5.1	94.7	0.1	0.33	1.35	0.74	0.68	—	32958	4257	12	0	0	0	0	logfile
✔	6S6V	10107	2021-09-03	2019-07-03	3.5	3.70	—	3.5	0.009	0.91	0.0	0.06	15.37	0.01	1.827	6.23	0.24	7.8	92.2	0.0	-3.61	0.86	0.86	2.78	3.5	0.002	0.56	0.0	0.04	16.09	0.00	1.816	8.22	0.24	4.4	95.6	0.0	-0.04	0.47	0.86	0.86	2.79	11820	1498	8	0	8	0	0	logfile
✔	6UZZ	20965	2021-09-03	2019-11-16	3.1	3.48	—	3.4	0.009	0.92	0.0	0.06	10.61	0.01	2.325	2.53	0.24	1.8	98.0	0.2	-4.22	0.60	0.81	3.12	3.4	0.003	0.56	0.0	0.04	14.99	0.00	2.250	5.35	0.18	2.4	97.6	0.0	2.83	0.65	0.68	0.86	1.77	15832	1984	12	0	8	0	0	logfile
✔	6DRJ	7999	2021-09-05	2018-06-12	3.3	3.80	—	3.7	0.009	1.15	8.0	0.07	10.86	0.01	2.093	5.46	0.14	4.4	95.6	0.0	-3.18	0.67	0.79	1.95	3.7	0.004	0.63	0.0	0.04	14.13	0.00	2.151	4.86	0.49	3.6	96.4	0.0	0.10	1.24	0.70	0.83	1.74	35516	5064	8	0	8	0	0	logfile
✔	6oXL	20220	2021-09-03	2019-05-13	3.5	3.82	3.60	3.7	0.010	1.08	0.0	0.06	9.46	0.01	2.236	6.62	0.06	5.6	94.4	0.0	-5.46	0.81	0.84	3.05	3.7	0.006	0.85	0.0	0.04	13.56	0.00	2.170	9.86	0.13	3.2	96.8	0.0	-0.40	1.36	0.80	0.81	1.60	14413	1808	6	0	7	0	0	logfile
✔	6T72	10389	2021-09-04	2019-10-21	3.7	3.79	—	3.8	0.013	1.64	0.0	0.11	14.69	0.02	2.167	4.27	0.00	2.1	97.9	0.0	-2.53	0.76	0.87	2.40	3.7	0.004	0.60	0.0	0.04	15.01	0.00	2.077	3.64	0.26	3.2	96.8	0.0	1.38	1.25	0.78	0.88	1.84	26278	3388	14	0	210	0	0	logfile
✔	6BAA	7073	2021-09-06	2017-10-12	3.63	3.87	—	3.8	0.007	1.28	0.0	0.07	11.10	0.01	2.235	11.79	1.01	4.1	95.9	0.0	-1.13	0.61	0.64	0.78	3.8	0.009	0.97	1.0	0.05	14.83	0.00	2.207	11.57	0.70	3.4	96.6	0.0	1.44	1.34	0.65	0.79	1.38	44852	6552	16	0	8	0	0	logfile
✔	5oYB	3860	2021-09-03	2017-09-08	3.75	3.87	3.90	3.8	0.007	1.18	8.0	0.10	12.85	0.01	1.771	8.83	3.12	7.6	92.4	0.0	-3.98	0.65	0.84	2.44	3.8	0.003	0.74	0.0	0.04	15.40	0.00	2.179	9.55	0.23	4.9	95.1	0.0	0.91	1.38	0.65	0.82	1.53	11770	1436	4	0	4	0	0	logfile

• ← previous
• Page 2 of 279
• next →