Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6NYG	0543	2023-04-26	2019-02-11	3.9	4.55	—	3.9	0.005	0.97	0.0	0.06	10.45	0.00	2.242	9.18	0.16	14.1	85.9	0.0	-4.66	0.82	0.64	0.83	3.9	0.003	0.73	0.0	0.05	13.61	0.00	2.093	18.96	0.18	11.3	88.7	0.0	-3.94	1.29	0.83	0.68	0.96	68664	9000	12	0	0	0	0	logfile
✔	6NYL	0545	2023-04-26	2019-02-11	3.7	4.50	—	4.1	0.008	1.14	0.0	0.06	11.10	0.01	2.233	10.38	0.97	16.1	83.9	0.0	-5.60	0.87	0.74	2.26	4.1	0.005	0.81	0.0	0.05	12.87	0.00	2.133	25.47	0.31	20.1	79.9	0.0	-4.78	0.53	0.87	0.74	1.84	68664	9000	12	0	0	0	0	logfile
✔	6NYJ	0544	2023-04-26	2019-02-11	3.2	3.93	—	3.8	0.008	1.06	0.0	0.06	10.60	0.01	2.247	7.25	0.54	15.2	84.8	0.0	-5.28	0.82	0.77	3.30	3.8	0.007	0.80	0.0	0.05	12.81	0.00	2.204	15.43	0.38	18.1	81.9	0.0	-4.31	0.58	0.83	0.79	3.08	68664	9000	12	0	0	0	0	logfile
✔	7PHR	13427	2023-04-22	2021-08-18	3.08	3.38	—	3.4	0.006	0.77	0.0	0.05	12.63	0.00	2.475	5.22	0.08	2.6	97.4	0.0	-0.08	0.66	0.79	3.56	3.4	0.003	0.49	0.0	0.04	14.68	0.00	2.217	6.19	0.32	2.7	97.3	0.0	0.82	0.40	0.66	0.81	3.26	11511	1443	14	0	6	0	0	logfile
✔	6NYM	0546	2023-04-26	2019-02-11	3.6	4.42	—	4.1	0.005	0.94	0.0	0.06	10.43	0.00	2.260	8.20	0.32	12.6	87.4	0.0	-5.10	0.87	0.78	2.54	4.1	0.007	0.83	0.0	0.05	12.88	0.00	2.133	18.95	0.35	20.3	79.7	0.0	-4.50	1.20	0.88	0.80	2.49	68664	9000	12	0	0	0	0	logfile
✔	7W94	32360	2023-04-27	2021-12-09	3.4	3.02	—	3.6	0.003	0.67	0.0	0.05	13.57	0.01	2.288	3.37	0.14	3.4	96.6	0.0	-4.24	0.78	0.74	1.49	3.5	0.005	0.76	0.0	0.05	16.33	0.00	2.055	14.42	0.57	6.9	93.1	0.0	-1.66	0.73	0.80	0.79	1.58	25082	3206	3	0	0	0	0	logfile
✔	5ND1	3619	2023-04-23	2017-03-07	3.7	3.86	—	3.9	0.017	2.27	54.0	0.15	22.44	0.01	0.204	100.40	32.66	7.8	89.7	2.5	-2.95	0.47	0.82	1.08	3.9	0.005	0.84	0.0	0.04	18.26	0.00	2.091	15.15	0.95	9.3	90.2	0.5	-1.95	1.59	0.48	0.83	1.01	14963	1977	2	0	0	0	0	logfile
✔	7USY	26743	2023-04-24	2022-04-26	3.54	3.90	3.64	3.9	0.004	0.78	0.0	0.04	16.48	0.01	1.415	8.72	0.28	3.0	97.0	0.0	1.55	0.56	0.69	0.66	3.8	0.003	0.55	0.0	0.04	16.83	0.00	2.189	8.51	0.57	2.8	97.2	0.0	1.62	0.42	0.55	0.66	0.73	16582	2025	13	0	16	0	0	logfile
✔	7K0L	22601	2023-04-20	2020-09-04	3.4	3.83	—	3.7	0.004	0.60	0.0	0.04	12.59	0.00	2.141	4.28	0.00	1.9	98.1	0.0	1.09	0.74	0.87	3.05	3.7	0.003	0.49	0.0	0.04	13.87	0.00	2.212	5.13	0.12	2.0	98.0	0.0	1.07	1.04	0.75	0.88	2.70	7619	964	4	0	2	0	0	logfile
✔	7KS9	23016	2023-04-27	2020-11-21	4.75	5.64	4.96	4.9	0.005	0.80	0.0	0.05	11.85	0.01	2.222	3.57	0.07	1.9	98.1	0.0	-0.64	0.82	0.74	—	4.8	0.002	0.60	0.0	0.04	12.09	0.00	2.090	11.72	0.00	3.0	97.0	0.0	0.26	0.70	0.84	0.79	—	25380	3189	20	0	59	0	0	logfile
✔	7PGS	13394	2023-04-24	2021-08-15	3.4	3.61	3.34	3.4	0.002	0.40	0.0	0.03	10.77	0.00	1.972	3.57	0.66	1.2	98.8	0.0	-0.33	0.80	0.79	2.03	3.4	0.003	0.54	0.0	0.03	13.21	0.00	1.871	6.13	0.08	3.3	96.7	0.0	1.64	0.74	0.82	0.81	1.41	67202	4210	2	0	1	0	33807	logfile
✔	8D0B	27104	2023-04-29	2022-05-26	3.43	4.09	3.52	2.2	0.002	0.48	0.0	0.04	15.42	0.00	2.167	5.43	0.06	3.1	96.9	0.0	1.19	0.87	0.83	1.67	2.2	0.006	0.58	0.0	0.04	15.99	0.00	2.165	6.57	0.09	4.9	95.1	0.0	1.08	0.20	0.88	0.84	1.81	29367	3630	8	15	0	0	0	logfile
✔	7V80	31785	2023-04-20	2021-08-22	3.9	4.10	—	4.0	0.004	0.65	0.0	0.05	15.00	0.00	2.120	8.76	0.00	6.2	93.8	0.0	-0.76	0.65	0.72	1.58	4.0	0.003	0.71	0.0	0.05	16.57	0.00	2.129	11.63	0.43	6.1	93.9	0.0	-0.41	1.17	0.67	0.76	1.33	6609	797	7	0	11	0	0	logfile
✔	7NA7	24267	2023-04-21	2021-06-20	2.7	2.07	—	2.0	0.006	1.04	5.0	0.22	12.93	0.01	2.178	7.05	0.61	1.6	98.4	0.0	0.32	0.76	0.75	3.53	1.9	0.004	0.79	0.0	0.07	15.85	0.00	2.129	9.26	2.34	2.5	97.5	0.0	0.49	0.54	0.81	0.82	3.65	9036	1142	7	0	2	0	0	logfile
✔	7RFP	24444	2023-04-20	2021-07-14	4.4	4.57	—	4.3	0.014	2.06	8.0	0.12	7.12	0.01	1.581	3.60	8.00	9.5	87.5	3.0	-1.46	0.68	0.61	—	4.3	0.004	0.92	0.0	0.04	7.02	0.00	2.177	9.44	0.00	14.9	84.6	0.5	-3.98	1.49	0.80	0.75	—	5532	1114	6	0	0	0	0	logfile
✔	6LUM	0981	2023-04-27	2020-01-29	2.84	3.26	2.90	3.2	0.038	1.83	0.0	0.23	15.91	0.02	2.061	11.36	1.72	9.8	90.1	0.2	-3.41	0.72	0.84	3.29	3.2	0.004	1.10	0.0	0.06	16.63	0.00	1.795	9.30	1.95	7.0	93.0	0.0	-0.61	0.47	0.65	0.86	2.91	26191	3178	28	0	39	0	0	logfile
✔	7V76	31760	2023-04-27	2021-08-21	3.2	3.71	—	3.6	0.004	0.58	0.0	0.05	13.70	0.00	2.164	6.14	0.00	4.5	95.5	0.0	0.02	0.78	0.80	2.16	3.6	0.004	0.59	0.0	0.05	15.16	0.00	2.082	6.48	0.22	5.1	94.9	0.1	-0.10	0.34	0.80	0.84	2.03	25219	3088	37	0	77	0	0	logfile
✔	7V78	31762	2023-04-27	2021-08-21	3.4	3.85	—	3.7	0.005	0.63	0.0	0.05	13.65	0.00	2.142	6.37	0.00	5.4	94.5	0.1	-0.20	0.74	0.77	2.64	3.7	0.008	0.73	0.0	0.05	15.13	0.00	2.107	7.37	0.44	6.4	93.5	0.1	-0.70	0.36	0.79	0.84	2.48	25677	3123	41	0	90	0	0	logfile
✔	7EDF	31069	2023-04-27	2021-03-16	3.2	3.77	—	3.7	0.004	0.71	0.0	0.05	13.72	0.00	2.069	6.73	0.26	5.9	93.9	0.2	-0.89	0.78	0.79	2.36	3.7	0.005	0.67	0.0	0.05	15.15	0.00	2.102	6.35	0.34	6.8	93.1	0.2	-0.83	0.38	0.77	0.81	1.96	25090	3065	39	0	82	0	0	logfile
✔	6YG8	10799	2023-04-27	2020-03-27	3.0	3.39	—	3.2	0.005	0.60	0.0	0.05	11.98	0.00	2.166	6.88	0.00	4.7	95.3	0.0	-3.49	0.83	0.86	3.96	3.3	0.004	0.61	0.0	0.05	14.33	0.00	2.167	7.56	1.77	4.2	95.8	0.0	-0.38	1.12	0.84	0.88	3.42	24330	3132	5	0	0	0	0	logfile

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