Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6B44	7048	2022-05-15	2017-09-25	2.9	3.00	—	3.0	0.006	0.99	0.0	0.06	14.77	0.01	2.237	5.60	0.43	11.4	88.6	0.0	-4.46	0.65	0.77	3.33	3.0	0.004	0.67	0.0	0.04	17.23	0.00	2.122	10.68	2.54	9.2	90.8	0.0	-1.84	0.99	0.65	0.79	2.64	22681	2879	12	114	0	0	0	logfile
✔	3J5P	5778	2022-05-14	2013-10-28	3.275	3.63	3.36	3.4	0.011	1.53	0.0	0.09	21.59	0.01	1.156	79.28	27.79	5.7	94.3	0.0	-0.42	0.62	0.55	0.56	3.5	0.003	0.88	0.0	0.04	17.12	0.00	2.147	17.88	0.35	5.2	94.8	0.0	0.56	2.07	0.73	0.79	0.76	18636	2324	4	0	44	0	0	logfile
✔	3J9J	5778	2022-05-14	2015-02-02	3.275	3.52	3.19	3.6	0.015	1.08	0.0	0.09	9.35	0.01	2.266	2.70	0.00	3.3	94.5	2.2	-0.65	0.53	0.57	2.57	3.5	0.003	0.65	0.0	0.04	15.80	0.00	1.905	14.19	0.17	6.7	92.7	0.6	2.30	3.87	0.59	0.76	1.97	21068	1260	4	0	0	0	10624	logfile
✔	6B48	7052	2022-05-15	2017-09-25	3.6	3.85	—	3.9	0.007	0.98	1.0	0.06	11.90	0.01	2.223	6.15	0.10	12.1	87.8	0.1	-4.93	0.73	0.79	2.55	3.9	0.008	0.89	1.0	0.04	14.63	0.00	2.145	12.44	0.36	8.9	91.1	0.0	-2.09	1.05	0.73	0.77	1.71	22333	2976	11	60	0	0	0	logfile
✔	6Y1Z	10673	2022-05-14	2020-02-14	2.82	3.48	—	3.3	0.006	0.62	0.0	0.24	14.03	0.00	2.325	3.51	2.49	2.4	97.6	0.0	-1.37	0.66	0.79	2.66	3.3	0.003	0.87	0.0	0.12	16.05	0.00	2.093	4.80	2.82	2.2	97.8	0.0	1.11	0.56	0.58	0.72	2.46	16610	1930	10	0	35	0	0	logfile
✔	6RWB	10037	2022-05-15	2019-06-04	3.25	3.23	—	3.2	0.006	0.99	0.0	0.05	10.24	0.01	2.253	4.69	0.36	9.9	90.1	0.0	-4.08	0.81	0.80	2.59	3.1	0.004	0.67	0.0	0.04	15.37	0.00	2.137	9.82	0.36	9.1	90.9	0.0	-0.13	1.29	0.83	0.85	2.08	75405	9365	5	0	0	0	0	logfile
✔	6Ni3	9376	2022-05-14	2018-12-26	3.8	4.22	—	4.0	0.010	1.21	0.0	0.07	10.90	0.01	2.258	4.73	0.23	5.3	94.7	0.0	-2.86	0.75	0.76	1.71	4.0	0.013	1.37	1.0	0.05	15.19	0.00	1.985	15.44	0.23	4.1	95.9	0.0	0.22	1.75	0.76	0.78	1.62	8136	1043	6	0	1	0	0	logfile
✔	5KYH	8298	2022-05-17	2016-07-21	4.0	3.99	—	4.2	0.014	1.82	0.0	0.11	11.44	0.01	1.692	34.34	3.90	2.5	96.2	1.3	-0.68	0.47	0.78	—	4.1	0.003	0.75	0.0	0.05	15.12	0.00	2.070	10.40	0.35	5.4	94.6	0.0	0.13	1.73	0.47	0.79	—	38892	5082	21	0	0	0	0	logfile
✔	5G5L	3439	2022-05-17	2016-05-26	4.8	5.08	—	4.8	0.010	1.38	14.0	0.09	16.60	0.01	0.675	31.29	7.76	6.0	92.2	1.8	-2.38	0.81	0.71	—	4.8	0.003	0.73	0.0	0.04	13.45	0.00	2.016	17.49	0.00	4.2	95.8	0.1	0.33	3.24	0.85	0.83	—	37349	4686	20	0	7	0	0	logfile
✔	6N4B	0339	2022-05-12	2018-11-18	3.0	3.84	—	3.8	0.011	1.40	4.0	0.09	9.55	0.01	1.855	20.29	0.84	2.7	97.3	0.0	-2.27	0.55	0.81	3.06	3.8	0.003	0.64	0.0	0.04	14.74	0.00	2.206	6.64	1.68	3.0	97.0	0.0	-0.30	0.64	0.53	0.81	2.65	8453	1121	6	0	3	0	0	logfile
✔	6V38	21029	2022-05-16	2019-11-25	3.8	3.97	—	3.8	0.014	1.47	0.0	0.07	18.17	0.02	2.255	15.24	4.55	5.3	94.7	0.0	-2.89	0.66	0.79	1.16	3.8	0.003	0.60	0.0	0.04	16.13	0.00	2.222	12.41	0.13	4.4	95.6	0.0	-0.39	0.65	0.66	0.80	0.93	29152	3496	8	0	56	0	0	logfile
✔	6SJF	10216	2022-05-15	2019-08-13	3.9	4.09	—	3.9	0.003	0.57	0.0	0.04	13.04	0.01	2.307	4.48	2.98	2.0	98.0	0.0	-3.64	0.83	0.78	1.33	3.9	0.004	0.72	0.0	0.04	16.45	0.00	2.113	15.35	0.29	3.5	96.5	0.0	0.58	0.96	0.85	0.83	1.19	23826	2847	4	54	0	0	0	logfile
✔	5X6o	6708	2022-05-14	2017-02-22	3.9	4.03	—	3.9	0.007	1.01	4.0	0.06	11.26	0.00	1.863	21.14	1.64	15.8	82.1	2.2	-5.44	0.60	0.72	1.68	3.9	0.009	1.01	1.0	0.04	14.78	0.00	2.185	10.83	0.29	8.2	90.4	1.3	-0.84	0.80	0.61	0.76	0.82	19309	2701	2	0	0	0	0	logfile
✔	6SJE	10215	2022-05-15	2019-08-13	4.1	4.27	—	4.1	0.003	0.59	0.0	0.04	13.69	0.01	2.264	4.44	3.06	2.1	97.9	0.0	-3.60	0.82	0.77	—	4.0	0.005	0.71	0.0	0.04	15.39	0.00	2.064	17.00	0.00	4.2	95.8	0.0	0.29	2.07	0.85	0.82	—	24115	2847	4	68	0	0	0	logfile
✔	6SJG	10217	2022-05-15	2019-08-13	3.8	3.98	—	3.8	0.003	0.56	0.0	0.04	12.74	0.01	2.294	4.31	2.90	2.2	97.8	0.0	-3.61	0.81	0.73	1.24	3.8	0.006	0.83	0.0	0.04	16.24	0.00	1.679	17.12	0.12	3.7	96.3	0.0	0.21	1.45	0.84	0.79	1.27	23826	2847	4	54	0	0	0	logfile
✔	5JLF	8163	2022-05-14	2016-04-27	3.6	3.82	—	3.7	0.013	1.58	17.0	0.11	12.21	0.01	2.184	9.01	1.29	2.9	96.6	0.6	-0.70	0.64	0.74	2.52	3.7	0.003	0.74	0.0	0.04	15.30	0.00	1.990	11.16	0.71	3.8	96.0	0.3	0.19	1.43	0.68	0.83	1.61	15800	1835	12	0	280	0	0	logfile
✔	6EE8	9039	2022-05-16	2018-08-13	3.92	4.56	—	4.0	0.007	1.04	2.0	0.06	15.74	0.01	2.082	7.92	0.65	6.5	93.4	0.1	-3.18	0.89	0.86	1.12	4.0	0.003	0.69	0.0	0.04	16.82	0.00	1.980	13.03	0.21	5.6	94.4	0.0	0.07	1.42	0.90	0.87	0.99	29784	3508	11	125	3	0	0	logfile
✔	6V35	21028	2022-05-17	2019-11-25	3.5	3.83	—	3.7	0.011	1.23	4.0	0.07	12.70	0.01	2.296	10.11	0.81	7.0	93.0	0.0	-3.13	0.68	0.82	2.47	3.7	0.003	0.68	0.0	0.04	14.90	0.00	2.164	12.59	0.20	4.3	95.7	0.0	-0.40	0.80	0.68	0.82	2.53	36488	4448	16	0	56	0	0	logfile
✔	6HRB	0258	2022-05-13	2018-09-26	4.0	4.20	3.96	4.0	0.008	0.96	0.0	0.05	9.28	0.01	2.186	6.75	0.26	7.2	92.8	0.0	-4.97	0.74	0.84	—	4.0	0.003	0.76	0.0	0.04	13.56	0.00	2.132	15.05	0.18	4.3	95.7	0.0	-0.40	1.27	0.74	0.84	—	10787	1447	5	0	1	0	0	logfile
✔	6PWo	20509	2022-05-13	2019-07-23	3.4	4.35	3.45	4.0	0.005	0.61	0.0	0.05	13.33	0.00	2.407	5.49	0.46	2.7	97.3	0.0	-0.76	0.80	0.85	1.87	4.0	0.003	0.58	0.0	0.04	14.49	0.00	2.285	5.73	0.13	2.3	97.7	0.0	2.54	1.25	0.81	0.87	1.76	14217	1862	7	0	0	0	0	logfile

• ← previous
• Page 2 of 376
• next →