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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6NMC | 0446 | 2023-08-12 | 2019-01-10 | 4.24 | 4.55 | — | 4.2 | 0.014 | 1.16 | 6.0 | 0.07 | 16.40 | 0.01 | 2.015 | 20.07 | 2.45 | 10.2 | 89.4 | 0.4 | -4.23 | 0.86 | 0.76 | — | 4.2 | 0.005 | 0.77 | 0.0 | 0.04 | 14.53 | 0.00 | 1.850 | 22.51 | 0.07 | 8.7 | 91.3 | 0.0 | -1.07 | 1.84 | 0.89 | 0.85 | — | 12808 | 1480 | 8 | 25 | 2 | 6 | 0 | logfile |
✔ | 7MiJ | 23853 | 2023-08-17 | 2021-04-17 | 1.98 | 1.95 | — | 2.0 | 0.010 | 1.38 | 4.0 | 0.05 | 19.92 | 0.01 | 2.320 | 3.08 | 0.18 | 2.8 | 97.2 | 0.0 | -3.96 | 0.75 | 0.81 | 5.48 | 2.0 | 0.002 | 0.51 | 0.0 | 0.04 | 18.05 | 0.00 | 2.213 | 4.43 | 0.92 | 2.6 | 97.4 | 0.0 | 1.38 | 1.08 | 0.75 | 0.80 | 4.57 | 23010 | 2556 | 12 | 0 | 38 | 328 | 0 | logfile |
✔ | 7QEY | 13944 | 2023-08-11 | 2021-12-03 | 2.0 | 2.46 | — | 2.2 | 0.005 | 0.85 | 0.0 | 0.03 | 10.53 | 0.00 | 2.199 | 3.57 | 2.35 | 1.7 | 98.3 | 0.0 | 1.74 | 0.77 | 0.90 | 5.27 | 2.1 | 0.003 | 0.67 | 0.0 | 0.04 | 13.25 | 0.00 | 2.163 | 4.76 | 1.23 | 2.4 | 97.6 | 0.0 | 3.06 | 0.57 | 0.78 | 0.93 | 4.32 | 9467 | 1092 | 18 | 0 | 30 | 281 | 0 | logfile |
✔ | 6SCJ | 10141 | 2023-08-24 | 2019-07-24 | 3.6 | 3.92 | — | 3.8 | 0.005 | 0.99 | 0.0 | 0.06 | 10.89 | 0.01 | 2.235 | 4.85 | 0.14 | 13.3 | 86.6 | 0.1 | -4.97 | 0.78 | 0.76 | 1.82 | 3.8 | 0.004 | 0.77 | 0.0 | 0.04 | 14.25 | 0.00 | 1.995 | 12.04 | 0.32 | 11.3 | 88.7 | 0.0 | -2.21 | 1.63 | 0.79 | 0.78 | 1.39 | 39884 | 5102 | 6 | 0 | 36 | 0 | 0 | logfile |
✔ | 6HiZ | 0233 | 2023-08-19 | 2018-08-31 | 3.08 | 3.20 | 3.05 | 3.1 | 0.009 | 1.39 | 0.0 | 0.06 | 18.08 | 0.01 | 1.866 | 11.16 | 12.80 | 3.2 | 96.7 | 0.1 | -2.90 | 0.89 | 0.91 | 2.63 | 3.1 | 0.002 | 0.58 | 0.0 | 0.04 | 16.93 | 0.00 | 1.989 | 8.25 | 0.16 | 3.3 | 96.7 | 0.0 | 1.26 | 0.78 | 0.87 | 0.89 | 2.62 | 76845 | 9056 | 33 | 143 | 19 | 3 | 0 | logfile |
✔ | 6TMV | 10528 | 2023-08-11 | 2019-12-05 | 3.45 | 3.57 | — | 3.5 | 0.008 | 1.29 | 0.0 | 0.07 | 13.72 | 0.00 | 2.584 | 1.72 | 1.04 | 3.9 | 96.1 | 0.0 | -3.14 | 0.81 | 0.83 | 2.35 | 3.5 | 0.005 | 0.62 | 0.0 | 0.04 | 15.74 | 0.00 | 2.142 | 8.11 | 0.24 | 2.8 | 97.2 | 0.0 | 0.81 | 1.39 | 0.83 | 0.83 | 1.98 | 58106 | 7604 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 7P92 | 13258 | 2023-08-11 | 2021-07-23 | 2.7 | 2.17 | 2.57 | 2.3 | 0.003 | 0.56 | 1.0 | 0.04 | 14.12 | 0.00 | 1.985 | 4.69 | 0.18 | 3.7 | 96.3 | 0.0 | 0.23 | 0.52 | 0.78 | 3.78 | 2.4 | 0.002 | 0.52 | 0.0 | 0.04 | 17.07 | 0.00 | 2.196 | 5.77 | 1.20 | 2.7 | 97.3 | 0.0 | 0.75 | 1.88 | 0.51 | 0.78 | 3.47 | 10436 | 1322 | 9 | 0 | 12 | 157 | 0 | logfile |
✔ | 7KF5 | 22843 | 2023-08-26 | 2020-10-13 | 3.2 | 3.46 | — | 3.6 | 0.003 | 0.55 | 0.0 | 0.04 | 15.93 | 0.02 | 2.007 | 9.13 | 0.24 | 4.2 | 95.8 | 0.0 | -2.33 | 0.40 | 0.71 | 0.91 | 3.5 | 0.004 | 0.64 | 0.0 | 0.04 | 17.66 | 0.00 | 2.030 | 9.30 | 0.47 | 4.8 | 95.2 | 0.0 | -0.05 | 1.41 | 0.39 | 0.76 | 1.73 | 48069 | 3075 | 3 | 0 | 0 | 0 | 24414 | logfile |
✔ | 7F8o | 31491 | 2023-08-15 | 2021-07-02 | 3.6 | 3.69 | 3.45 | 3.7 | 0.008 | 0.88 | 0.0 | 0.04 | 12.86 | 0.00 | 2.106 | 8.68 | 0.71 | 4.6 | 95.4 | 0.0 | 0.47 | 0.61 | 0.82 | 3.06 | 3.6 | 0.003 | 0.65 | 0.0 | 0.04 | 14.97 | 0.00 | 2.151 | 11.77 | 0.41 | 5.0 | 95.0 | 0.0 | 0.31 | 0.48 | 0.61 | 0.83 | 2.37 | 18032 | 2184 | 14 | 0 | 21 | 0 | 0 | logfile |
✔ | 7F8N | 31490 | 2023-08-15 | 2021-07-02 | 3.4 | 3.52 | 3.33 | 3.5 | 0.012 | 1.08 | 0.0 | 0.04 | 16.48 | 0.01 | 2.219 | 10.34 | 2.55 | 4.7 | 95.3 | 0.0 | -0.91 | 0.62 | 0.81 | 2.45 | 3.5 | 0.003 | 0.57 | 0.0 | 0.04 | 14.77 | 0.00 | 2.171 | 12.84 | 0.16 | 4.2 | 95.8 | 0.0 | -0.12 | 0.45 | 0.60 | 0.84 | 1.98 | 18522 | 2163 | 14 | 0 | 49 | 0 | 0 | logfile |
✔ | 6J6i | 0688 | 2023-08-23 | 2019-01-15 | 3.7 | 3.66 | — | 3.6 | 0.008 | 1.13 | 0.0 | 0.06 | 11.69 | 0.01 | 2.132 | 6.89 | 0.72 | 10.1 | 89.6 | 0.3 | -4.37 | 0.82 | 0.83 | 2.07 | 3.5 | 0.003 | 0.75 | 0.0 | 0.04 | 15.07 | 0.00 | 2.090 | 12.44 | 0.35 | 9.4 | 90.6 | 0.0 | -1.58 | 0.82 | 0.82 | 0.83 | 1.44 | 35992 | 4470 | 13 | 0 | 7 | 0 | 0 | logfile |
✔ | 7SYF | 25524 | 2023-08-12 | 2021-11-24 | 4.2 | 3.03 | 3.92 | 2.2 | 0.013 | 1.86 | 8.0 | 0.10 | 14.32 | 0.01 | 2.460 | 1.62 | 1.31 | 3.9 | 96.1 | 0.0 | -1.56 | 0.67 | 0.61 | — | 2.2 | 0.003 | 0.78 | 0.0 | 0.04 | 13.94 | 0.00 | 1.993 | 16.84 | 0.08 | 3.1 | 96.9 | 0.0 | 0.80 | 1.17 | 0.68 | 0.63 | — | 11108 | 1391 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6L3T | 0825 | 2023-08-16 | 2019-10-15 | 2.34 | 2.41 | 2.27 | 2.4 | 0.010 | 1.07 | 0.0 | 0.05 | 15.75 | 0.01 | 2.306 | 1.05 | 3.61 | 1.0 | 99.0 | 0.0 | -3.24 | 0.68 | 0.86 | 4.85 | 2.4 | 0.002 | 0.55 | 0.0 | 0.03 | 16.32 | 0.00 | 1.992 | 2.15 | 1.20 | 1.1 | 98.9 | 0.0 | 3.02 | 1.61 | 0.67 | 0.87 | 4.18 | 19722 | 1206 | 18 | 0 | 6 | 204 | 9588 | logfile |
✔ | 7NKQ | 12446 | 2023-08-11 | 2021-02-18 | 2.98 | 3.25 | — | 3.1 | 0.004 | 0.49 | 0.0 | 0.04 | 13.52 | 0.00 | 2.018 | 7.16 | 0.00 | 2.7 | 97.3 | 0.0 | 1.39 | 0.81 | 0.81 | 2.98 | 3.1 | 0.003 | 0.48 | 0.0 | 0.04 | 15.71 | 0.00 | 2.008 | 6.87 | 1.05 | 2.3 | 97.7 | 0.0 | 2.27 | 0.33 | 0.82 | 0.84 | 2.51 | 10621 | 714 | 8 | 0 | 0 | 0 | 5312 | logfile |
✔ | 7X0S | 32923 | 2023-08-16 | 2022-02-22 | 3.1 | 3.13 | — | 3.1 | 0.004 | 0.61 | 5.0 | 0.05 | 10.92 | 0.00 | 1.018 | 6.85 | 3.51 | 4.8 | 95.2 | 0.0 | -5.89 | 0.76 | 0.77 | 1.78 | 3.1 | 0.003 | 0.70 | 1.0 | 0.04 | 15.42 | 0.00 | 1.877 | 9.94 | 0.28 | 5.7 | 94.3 | 0.0 | -0.19 | 4.07 | 0.80 | 0.85 | 1.86 | 68346 | 8866 | 49 | 0 | 48 | 16 | 0 | logfile |
✔ | 6EF0 | 9042 | 2023-08-18 | 2018-08-15 | 4.43 | 3.84 | — | 4.1 | 0.011 | 1.07 | 0.0 | 0.06 | 12.59 | 0.01 | 2.089 | 8.55 | 0.00 | 16.8 | 83.2 | 0.0 | -5.24 | 0.62 | 0.79 | — | 4.1 | 0.003 | 0.78 | 0.0 | 0.04 | 13.01 | 0.00 | 2.112 | 12.90 | 0.04 | 8.3 | 91.7 | 0.0 | -2.02 | 2.20 | 0.62 | 0.80 | — | 24748 | 3318 | 20 | 0 | 6 | 0 | 0 | logfile |
✔ | 6YE4 | 10789 | 2023-08-11 | 2020-03-24 | 3.2 | 3.33 | 3.07 | 3.3 | 0.026 | 1.69 | 0.0 | 0.10 | 14.61 | 0.01 | 2.373 | 3.02 | 0.00 | 0.9 | 99.1 | 0.0 | -3.36 | 0.73 | 0.88 | 2.50 | 3.3 | 0.003 | 0.49 | 0.0 | 0.03 | 16.29 | 0.00 | 2.376 | 4.96 | 0.00 | 2.4 | 97.6 | 0.0 | 3.87 | 0.94 | 0.65 | 0.85 | 1.22 | 9140 | 1180 | 10 | 0 | 5 | 0 | 0 | logfile |
✔ | 6SD1 | 10145 | 2023-08-24 | 2019-07-26 | 2.6 | 2.74 | 2.55 | 2.7 | 0.003 | 0.53 | 0.0 | 0.04 | 12.42 | 0.00 | 2.149 | 8.45 | 0.00 | 4.3 | 95.7 | 0.0 | -2.90 | 0.74 | 0.84 | 4.92 | 2.7 | 0.003 | 0.55 | 0.0 | 0.04 | 16.74 | 0.00 | 2.181 | 8.49 | 1.47 | 0.0 | 100.0 | 0.0 | 2.00 | 0.59 | 0.76 | 0.87 | 4.33 | 39369 | 4983 | 33 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ZDi | 14650 | 2023-08-11 | 2022-03-29 | 2.9 | 3.06 | 2.82 | 3.1 | 0.013 | 2.74 | 0.0 | 0.04 | 16.49 | 0.01 | 2.378 | 3.63 | 0.00 | 0.9 | 99.1 | 0.0 | 1.10 | 0.64 | 0.84 | 5.30 | 3.1 | 0.005 | 1.48 | 0.0 | 0.04 | 16.61 | 0.00 | 2.159 | 5.01 | 0.37 | 1.0 | 99.0 | 0.0 | 3.01 | 0.30 | 0.69 | 0.87 | 4.42 | 10284 | 976 | 38 | 0 | 42 | 0 | 0 | logfile |
✔ | 7P91 | 13257 | 2023-08-16 | 2021-07-23 | 2.8 | 2.26 | 2.71 | 2.4 | 0.003 | 0.52 | 0.0 | 0.04 | 14.73 | 0.00 | 2.062 | 5.47 | 0.13 | 3.6 | 96.4 | 0.0 | 0.31 | 0.68 | 0.80 | 3.48 | 2.4 | 0.004 | 0.60 | 0.0 | 0.04 | 17.51 | 0.01 | 2.046 | 7.51 | 1.80 | 4.0 | 96.0 | 0.0 | 0.08 | 0.40 | 0.69 | 0.84 | 3.37 | 21419 | 2681 | 18 | 0 | 23 | 346 | 0 | logfile |