Table showing results for September 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6RiD	4889	2021-09-04	2019-04-23	2.9	2.97	2.84	2.9	0.005	0.77	0.0	0.05	14.04	0.01	2.078	3.52	0.14	3.6	96.4	0.0	-2.89	0.80	0.85	3.76	2.9	0.005	0.61	0.0	0.04	16.34	0.00	2.125	6.67	1.83	3.5	96.5	0.0	0.26	0.48	0.81	0.87	3.54	26705	3223	14	34	5	0	0	logfile
✔	6KZ4	0785	2021-09-03	2019-09-23	3.0	3.18	—	3.1	0.005	0.64	0.0	0.05	13.57	0.00	2.170	10.07	0.00	9.5	90.5	0.0	-4.51	0.80	0.86	2.99	3.1	0.003	0.62	0.0	0.05	15.62	0.00	2.152	9.81	2.05	8.7	91.3	0.0	-2.25	1.43	0.79	0.86	3.00	16698	2196	6	0	0	0	0	logfile
✔	5W7G	8780	2021-09-02	2017-06-19	4.5	4.20	—	4.2	0.015	1.17	0.0	0.07	15.16	0.01	2.165	6.62	0.45	1.2	98.8	0.0	-0.31	0.50	0.47	—	4.2	0.006	1.04	0.0	0.05	16.08	0.01	1.963	46.85	0.00	6.9	93.1	0.0	-1.71	2.25	0.53	0.54	—	53508	5397	44	504	0	0	0	logfile
✔	6DZK	8934	2021-09-06	2018-07-05	3.6	3.73	—	3.6	0.008	1.01	19.0	0.11	15.34	0.01	1.999	4.48	0.09	9.8	89.9	0.3	-4.16	0.83	0.79	1.48	3.6	0.008	0.87	9.0	0.10	16.58	0.00	1.869	10.51	0.70	8.7	91.3	0.0	-0.81	3.52	0.83	0.80	1.09	90307	2568	23	1511	0	0	37538	logfile
✔	6K7N	9942	2021-09-03	2019-06-07	2.84	2.94	2.68	2.9	0.016	1.45	0.0	0.14	15.74	0.01	2.046	6.84	0.44	8.0	91.9	0.1	-3.74	0.61	0.85	3.92	2.9	0.003	0.65	0.0	0.04	16.72	0.00	1.994	10.72	1.92	5.7	94.3	0.0	-0.66	0.52	0.68	0.88	3.50	10544	1308	4	0	8	0	0	logfile
✔	5NV3	3699	2021-09-06	2017-05-03	3.39	3.43	—	3.4	0.007	1.21	2.0	0.07	14.58	0.00	2.164	3.27	0.94	5.6	94.2	0.2	-2.82	0.09	0.16	3.78	3.4	0.008	0.91	0.0	0.04	16.56	0.00	2.070	8.47	0.23	2.8	97.2	0.0	-0.11	1.64	0.68	0.77	4.10	37816	4768	24	0	16	0	0	logfile
✔	6UGM	20765	2021-09-05	2019-09-26	3.7	3.82	—	3.7	0.010	1.29	16.0	0.07	24.13	0.01	1.984	8.22	1.24	6.5	93.4	0.1	-5.54	0.75	0.74	1.35	3.7	0.003	0.67	0.0	0.04	24.32	0.00	2.141	13.29	0.16	5.2	94.8	0.0	-2.61	0.60	0.74	0.70	0.79	23609	2205	19	292	2	0	0	logfile
✔	6U9F	20696	2021-09-04	2019-09-08	4.35	4.41	—	4.3	0.009	1.10	0.0	0.06	9.47	0.01	2.193	7.59	0.15	13.4	86.6	0.0	-4.71	0.78	0.78	—	4.3	0.002	0.65	0.0	0.05	12.03	0.00	2.096	12.22	0.00	8.5	91.5	0.0	-2.05	0.90	0.79	0.79	—	19179	2550	6	0	0	0	0	logfile
✔	6HTS	3954	2021-09-06	2018-10-04	4.8	5.78	—	4.7	0.004	0.55	0.0	0.04	17.72	0.00	1.820	11.76	1.39	1.7	98.3	0.0	-2.23	0.86	0.69	—	4.7	0.005	0.74	0.0	0.04	19.62	0.00	2.005	28.20	0.00	4.6	95.3	0.0	0.17	3.59	0.88	0.78	—	38744	4453	26	300	7	0	0	logfile
✔	6U9E	20695	2021-09-03	2019-09-08	4.21	4.33	—	4.3	0.008	1.08	0.0	0.06	9.09	0.00	2.228	5.86	0.00	14.1	85.9	0.0	-4.33	0.79	0.82	—	4.3	0.003	0.69	0.0	0.05	11.97	0.00	2.191	11.16	0.05	13.5	86.5	0.0	-2.90	1.75	0.80	0.83	—	17175	2148	6	0	0	0	0	logfile
✔	6FFC	4256	2021-09-02	2018-01-06	3.56	3.73	—	3.7	0.011	1.21	0.0	0.20	9.58	0.01	2.235	3.86	0.00	3.9	95.9	0.2	-3.27	0.70	0.86	3.78	3.7	0.004	0.70	0.0	0.04	14.08	0.00	2.158	9.71	0.21	3.5	96.5	0.0	1.27	1.15	0.71	0.86	2.39	8974	1144	4	0	2	0	0	logfile
✔	6o6R	0636	2021-09-05	2019-03-07	3.2	3.33	—	3.3	0.013	1.26	0.0	0.16	16.71	0.01	2.114	7.32	0.00	7.6	92.4	0.0	-6.54	0.61	0.79	2.48	3.3	0.008	0.89	0.0	0.04	16.87	0.00	2.002	14.92	0.07	7.6	92.4	0.0	-1.38	0.55	0.63	0.81	2.52	27744	3332	8	0	28	0	0	logfile
✔	5YKE	6831	2021-09-05	2017-10-14	4.11	4.22	3.92	4.1	0.006	0.80	0.0	0.05	13.44	0.01	2.246	11.42	7.60	3.7	95.9	0.4	-1.76	0.66	0.76	—	4.1	0.004	0.70	0.0	0.04	12.89	0.00	2.149	11.04	0.00	3.0	97.0	0.0	1.57	1.11	0.68	0.79	—	30636	3912	12	0	4	0	0	logfile
✔	6ND4	0441	2021-09-03	2018-12-13	4.3	4.41	—	4.2	0.010	1.03	0.0	0.06	14.45	0.02	2.230	5.19	0.00	6.4	93.6	0.1	-3.63	0.80	0.66	—	4.2	0.006	1.01	0.0	0.05	14.87	0.01	1.927	16.95	0.00	16.3	83.7	0.0	-3.22	1.31	0.85	0.77	—	63993	9225	30	551	1306	0	0	logfile
✔	6QZ9	4684	2021-09-04	2019-03-11	3.3	3.51	—	3.4	0.005	0.95	0.0	0.05	9.28	0.01	2.150	6.52	0.00	6.8	93.1	0.1	-4.54	0.70	0.70	0.78	3.4	0.004	0.94	0.0	0.05	17.12	0.01	1.999	24.01	0.79	6.5	93.5	0.0	-0.99	1.04	0.72	0.72	0.79	71724	8808	60	0	0	0	0	logfile
✔	6S1N	10081	2021-09-04	2019-06-19	4.86	4.98	—	4.8	0.009	1.13	2.0	0.06	17.87	0.01	1.929	9.54	0.83	6.3	93.4	0.4	-3.47	0.73	0.53	—	4.8	0.003	0.78	0.0	0.04	16.35	0.01	2.103	18.67	0.00	5.6	94.4	0.0	-1.21	4.20	0.84	0.75	—	19726	2399	11	50	3	0	0	logfile
✔	6o72	0638	2021-09-05	2019-03-07	3.0	3.18	—	3.2	0.012	1.45	0.0	0.16	16.40	0.01	2.062	8.42	0.00	7.4	92.6	0.0	-6.25	0.63	0.80	2.52	3.2	0.004	0.80	0.0	0.04	17.85	0.01	2.190	12.67	3.16	7.0	93.0	0.0	0.20	0.79	0.64	0.81	1.95	28592	3432	8	0	28	0	0	logfile
✔	6K7M	9941	2021-09-03	2019-06-07	2.95	3.08	2.77	3.0	0.016	1.36	0.0	0.14	15.55	0.01	2.002	5.26	0.61	6.8	93.1	0.1	-3.41	0.65	0.85	3.61	3.0	0.003	0.62	0.0	0.04	16.15	0.00	2.009	9.95	2.53	4.4	95.6	0.0	-0.07	0.53	0.70	0.87	3.12	10591	1307	4	0	9	0	0	logfile
✔	6K7G	9931	2021-09-03	2019-06-07	3.3	3.42	3.12	3.4	0.016	1.38	0.0	0.14	15.81	0.01	2.262	5.61	0.43	9.1	90.7	0.2	-4.12	0.61	0.85	3.53	3.4	0.005	0.69	0.0	0.04	16.63	0.00	2.182	10.42	0.26	7.1	92.9	0.0	-0.99	0.95	0.71	0.88	3.31	10569	1313	2	0	6	0	0	logfile
✔	6PV8	20488	2021-09-04	2019-07-19	3.87	4.04	3.94	4.0	0.025	1.95	1.0	0.28	11.65	0.01	2.057	5.09	0.69	4.9	95.1	0.0	-2.83	0.70	0.79	2.52	4.0	0.009	0.97	1.0	0.05	14.92	0.01	1.961	12.36	0.41	3.9	96.1	0.0	0.05	1.85	0.72	0.82	1.96	20051	2379	18	0	57	8	0	logfile

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