Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6VXX	24693	2023-02-24	2020-02-25	2.8	3.28	2.89	39.0	0.016	1.35	0.0	0.09	10.67	0.01	2.389	0.81	0.23	2.4	97.6	0.0	0.27	0.07	0.00	0.14	2.8	0.003	0.69	0.0	0.05	13.86	0.00	2.095	12.22	2.00	3.9	96.1	0.0	-0.28	1.68	0.14	0.11	0.11	23694	2916	21	0	63	0	0	logfile
✔	7B93	12095	2023-02-26	2020-12-14	3.04	3.13	3.09	3.0	0.006	0.81	0.0	1.03	14.70	0.00	1.904	7.72	0.03	4.1	95.9	0.0	-3.26	0.76	0.85	4.00	3.0	0.008	1.59	0.0	0.31	15.82	0.00	1.949	7.99	0.14	3.1	96.9	0.0	0.99	1.17	0.77	0.88	3.14	67492	8235	67	0	35	0	0	logfile
✔	7SAM	24952	2023-02-17	2021-09-22	4.3	6.95	4.38	4.2	0.001	0.39	0.0	0.02	13.28	0.00	1.952	2.96	0.00	0.0	0.0	0.0	—	0.84	0.51	—	4.3	0.007	0.88	0.0	0.04	22.84	0.01	1.820	82.61	0.00	0.0	0.0	0.0	—	5.78	0.96	0.87	—	5399	0	1	169	0	0	1802	logfile
✔	6oWS	20216	2023-02-24	2019-05-10	2.98	3.32	—	3.3	0.009	1.04	3.0	0.06	15.56	0.01	2.216	3.59	6.03	3.7	96.1	0.2	-5.39	0.73	0.80	3.03	3.3	0.003	0.69	0.0	0.04	16.49	0.00	2.164	6.88	2.49	2.4	97.6	0.0	0.04	2.24	0.76	0.84	2.98	23651	3069	6	0	6	0	0	logfile
✔	7K8X	22734	2023-02-27	2020-09-27	3.9	4.42	—	4.1	0.002	0.60	0.0	0.06	13.08	0.00	1.857	13.43	2.49	3.3	96.4	0.3	-2.04	0.76	0.69	1.31	4.1	0.003	0.63	0.0	0.04	14.35	0.00	2.127	12.49	0.23	4.6	95.4	0.0	0.02	1.18	0.80	0.83	1.72	27399	3478	10	0	28	0	0	logfile
✔	7P3R	13185	2023-02-18	2021-07-08	3.65	3.16	3.57	3.5	0.006	0.81	1.0	0.05	13.66	0.01	2.306	1.88	0.28	2.7	97.3	0.0	-3.67	0.30	0.70	1.05	3.5	0.004	0.59	0.0	0.04	14.62	0.00	2.160	5.04	0.28	2.3	97.7	0.0	3.53	0.58	0.29	0.64	1.05	7738	1338	4	0	0	0	0	logfile
✔	8B0J	15785	2023-02-26	2022-09-07	3.99	4.45	4.02	4.1	0.009	1.30	0.0	0.08	19.83	0.01	1.945	11.42	0.00	9.7	90.3	0.0	-2.43	0.73	0.68	1.71	4.1	0.003	0.62	0.0	0.04	19.52	0.00	1.931	14.86	0.48	5.0	95.0	0.0	0.11	1.39	0.75	0.74	1.68	28636	1931	7	160	0	0	12434	logfile
✔	7JJJ	22354	2023-02-22	2020-07-26	4.5	4.63	4.47	4.5	0.020	1.77	0.0	0.13	9.94	0.01	2.377	0.90	0.07	2.0	98.0	0.0	0.68	0.79	0.80	—	4.5	0.004	0.68	0.0	0.05	11.96	0.00	2.093	11.87	0.00	4.1	95.9	0.0	0.03	1.43	0.79	0.83	—	54614	6674	92	0	182	0	0	logfile
✔	6TMi	10522	2023-02-19	2019-12-04	3.5	3.96	3.49	3.8	0.006	0.64	0.0	0.04	16.16	0.01	2.113	9.16	0.58	10.0	90.0	0.0	-4.41	0.53	0.77	1.38	3.8	0.004	0.64	0.0	0.03	17.16	0.00	2.134	9.37	0.19	7.8	92.2	0.0	0.56	1.46	0.53	0.80	1.70	9606	605	5	0	0	0	4842	logfile
✔	7MTQ	23994	2023-02-19	2021-05-13	3.65	2.61	—	2.2	0.011	0.88	1.0	0.05	13.69	0.01	2.205	8.45	0.56	3.2	96.8	0.0	0.26	0.70	0.73	2.03	2.2	0.003	0.62	0.0	0.04	14.35	0.00	2.151	8.91	0.33	3.1	96.9	0.0	-0.12	0.46	0.71	0.75	1.92	10388	1486	4	0	4	0	0	logfile
✔	7TY0	26163	2023-02-19	2022-02-10	3.5	3.62	3.44	3.6	0.013	1.48	1.0	0.10	8.96	0.01	2.417	1.03	0.39	2.1	97.7	0.1	0.78	0.70	0.73	3.93	3.6	0.003	0.64	0.0	0.05	12.57	0.00	1.964	6.61	0.65	3.8	96.2	0.0	0.43	0.59	0.72	0.76	3.63	10640	1522	18	0	24	0	0	logfile
✔	7oNB	12994	2023-02-23	2021-05-25	3.1	3.40	3.04	3.0	0.005	1.01	0.0	0.06	13.91	0.01	2.273	5.59	0.00	3.6	96.4	0.0	-1.28	0.76	0.71	1.66	3.0	0.003	0.63	0.0	0.04	15.77	0.00	2.163	11.13	0.16	3.0	97.0	0.0	-0.08	0.79	0.80	0.82	2.26	20140	2568	14	46	6	0	0	logfile
✔	7LUV	23527	2023-02-22	2021-02-23	3.7	4.02	—	3.6	0.007	0.80	0.0	0.05	9.84	0.00	2.050	10.89	0.05	9.6	90.1	0.3	-4.47	0.76	0.79	2.90	3.6	0.002	0.61	0.0	0.04	13.35	0.00	2.152	6.93	0.45	5.2	94.8	0.0	0.42	0.90	0.77	0.82	1.91	18773	2168	6	0	210	0	0	logfile
✔	7PP4	13579	2023-02-24	2021-09-13	3.84	4.20	3.93	4.0	0.002	0.48	0.0	0.04	9.43	0.00	1.926	5.55	0.39	3.3	96.7	0.0	-0.03	0.83	0.80	1.49	4.0	0.005	0.72	0.0	0.04	13.88	0.00	2.041	11.96	0.35	5.4	94.6	0.0	-0.35	1.35	0.84	0.84	1.18	23816	3059	7	0	3	0	0	logfile
✔	7NVX	12616	2023-02-24	2021-03-16	3.9	3.92	3.77	3.8	0.003	0.49	0.0	0.04	15.65	0.00	1.971	6.61	0.00	4.5	95.5	0.0	0.85	0.70	0.64	1.31	3.8	0.004	0.72	0.0	0.04	18.10	0.00	0.904	15.82	0.32	5.1	94.8	0.0	-0.66	0.93	0.72	0.67	1.17	23663	2796	18	50	35	0	0	logfile
✔	6YJ4	10815	2023-02-25	2020-04-02	2.7	2.35	2.73	2.6	0.011	1.10	0.0	0.65	14.92	0.01	2.031	2.88	0.03	4.1	95.8	0.0	-2.17	0.58	0.79	4.22	2.5	0.005	1.03	0.0	0.18	16.84	0.00	1.386	6.85	1.61	3.4	96.6	0.0	0.76	0.57	0.63	0.84	3.71	66311	8126	94	0	50	275	0	logfile
✔	7VB0	31873	2023-02-27	2021-08-30	3.6	2.84	3.39	3.2	0.003	0.55	0.0	0.04	13.49	0.00	1.982	6.16	0.00	1.9	98.1	0.0	0.96	0.63	0.78	2.84	3.2	0.002	0.54	0.0	0.04	16.23	0.00	2.005	8.35	0.23	2.1	97.9	0.0	0.54	0.72	0.65	0.79	2.41	29553	3788	16	0	5	0	0	logfile
✔	7FEB	31551	2023-02-24	2021-07-19	2.11	2.54	—	2.6	0.004	0.65	0.0	0.05	15.91	0.01	2.211	11.24	0.30	1.5	98.5	0.0	0.07	0.75	0.82	3.11	2.6	0.004	0.65	0.0	0.05	16.54	0.01	2.050	9.13	2.83	1.5	98.5	0.0	0.44	1.95	0.75	0.85	3.22	24075	3024	9	0	0	0	0	logfile
✔	6RFS	4874	2023-02-23	2019-04-16	4.04	4.52	—	4.1	0.010	1.26	0.0	0.94	10.33	0.01	2.078	8.88	0.15	8.3	91.5	0.2	-4.08	0.83	0.83	—	4.1	0.008	1.57	0.0	0.29	11.95	0.00	2.089	15.73	0.00	5.9	94.1	0.0	-0.68	1.38	0.83	0.84	—	60966	7685	49	0	12	0	0	logfile
✔	7N1X	24126	2023-02-25	2021-05-28	4.0	2.34	—	1.8	0.013	1.88	13.0	0.14	14.66	0.01	1.484	9.88	1.97	8.1	91.3	0.6	-2.39	0.80	0.69	—	1.8	0.005	0.84	0.0	0.05	16.27	0.01	2.115	16.15	0.77	5.4	94.6	0.0	-1.23	0.73	0.80	0.69	—	26810	3257	35	0	95	0	0	logfile

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