Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6B48	7052	2022-07-05	2017-09-25	3.6	3.85	—	3.9	0.007	0.98	1.0	0.06	11.90	0.01	2.223	6.15	0.10	12.1	87.8	0.1	-4.93	0.73	0.79	2.55	3.9	0.008	0.89	1.0	0.04	14.63	0.00	2.145	12.44	0.36	8.9	91.1	0.0	-2.09	1.05	0.73	0.77	1.71	22333	2976	11	60	0	0	0	logfile
✔	6T64	10384	2022-07-06	2019-10-17	3.7	3.73	—	3.7	0.006	0.87	0.0	0.05	15.20	0.01	2.307	7.58	0.53	6.0	94.0	0.0	-3.28	0.50	0.76	2.25	3.7	0.003	0.67	0.0	0.04	16.44	0.00	2.225	9.61	0.30	5.8	94.2	0.0	1.20	1.40	0.51	0.78	1.58	30978	3906	18	0	0	0	0	logfile
✔	5K12	8194	2022-07-04	2016-05-17	1.8	2.40	—	2.8	0.008	0.97	0.0	0.06	10.27	0.01	2.051	19.79	0.82	3.8	96.2	0.0	-2.53	0.66	0.74	5.80	2.8	0.010	1.13	2.0	0.04	15.20	0.00	1.443	13.43	0.20	1.8	98.2	0.0	1.71	1.05	0.71	0.89	3.78	14856	1764	12	0	0	1086	0	logfile
✔	6RWB	10037	2022-07-05	2019-06-04	3.25	3.23	—	3.2	0.006	0.99	0.0	0.05	10.24	0.01	2.253	4.69	0.36	9.9	90.1	0.0	-4.08	0.81	0.80	2.59	3.1	0.004	0.67	0.0	0.04	15.37	0.00	2.137	9.82	0.36	9.1	90.9	0.0	-0.13	1.29	0.83	0.85	2.08	75405	9365	5	0	0	0	0	logfile
✔	5U76	8517	2022-07-06	2016-12-11	3.76	4.46	—	4.4	0.007	1.04	0.0	0.06	13.03	0.00	1.410	5.10	0.51	8.4	91.3	0.2	-3.69	0.56	0.58	0.90	4.3	0.005	0.89	0.0	0.05	16.04	0.01	2.126	22.87	0.61	5.7	94.3	0.0	-0.48	2.52	0.64	0.77	0.97	28364	3512	4	0	0	0	0	logfile
✔	5KYH	8298	2022-07-07	2016-07-21	4.0	3.99	—	4.2	0.014	1.82	0.0	0.11	11.44	0.01	1.692	34.34	3.90	2.5	96.2	1.3	-0.68	0.47	0.78	—	4.1	0.003	0.75	0.0	0.05	15.12	0.00	2.070	10.40	0.35	5.4	94.6	0.0	0.13	1.73	0.47	0.79	—	38892	5082	21	0	0	0	0	logfile
✔	6V38	21029	2022-07-06	2019-11-25	3.8	3.97	—	3.8	0.014	1.47	0.0	0.07	18.17	0.02	2.255	15.24	4.55	5.3	94.7	0.0	-2.89	0.66	0.79	1.16	3.8	0.003	0.60	0.0	0.04	16.13	0.00	2.222	12.41	0.13	4.4	95.6	0.0	-0.39	0.65	0.66	0.80	0.93	29152	3496	8	0	56	0	0	logfile
✔	6QM4	4587	2022-07-03	2019-02-01	3.8	3.88	3.83	3.8	0.007	0.99	0.0	0.05	15.63	0.01	2.242	3.99	0.00	4.8	95.2	0.0	-5.94	0.61	0.79	1.31	3.9	0.007	0.80	0.0	0.04	17.33	0.01	2.122	9.70	0.44	4.0	96.0	0.0	0.63	0.71	0.63	0.79	1.37	10580	1308	2	0	0	0	0	logfile
✔	6SJF	10216	2022-07-05	2019-08-13	3.9	4.09	—	3.9	0.003	0.57	0.0	0.04	13.04	0.01	2.307	4.48	2.98	2.0	98.0	0.0	-3.64	0.83	0.78	1.33	3.9	0.004	0.72	0.0	0.04	16.45	0.00	2.113	15.35	0.29	3.5	96.5	0.0	0.58	0.96	0.85	0.83	1.19	23826	2847	4	54	0	0	0	logfile
✔	6NPY	0476	2022-07-03	2019-01-18	3.8	4.03	—	3.8	0.006	1.16	0.0	0.06	16.44	0.01	2.244	8.65	0.84	14.6	85.3	0.1	-4.90	0.79	0.71	0.51	3.8	0.005	0.96	0.0	0.05	17.26	0.01	2.126	25.21	0.72	13.5	86.5	0.0	-2.55	1.81	0.79	0.72	0.29	7586	965	3	0	1	0	0	logfile
✔	6SJE	10215	2022-07-05	2019-08-13	4.1	4.27	—	4.1	0.003	0.59	0.0	0.04	13.69	0.01	2.264	4.44	3.06	2.1	97.9	0.0	-3.60	0.82	0.77	—	4.0	0.005	0.71	0.0	0.04	15.39	0.00	2.064	17.00	0.00	4.2	95.8	0.0	0.29	2.07	0.85	0.82	—	24115	2847	4	68	0	0	0	logfile
✔	6NQ1	0478	2022-07-03	2019-01-18	3.5	3.57	—	3.5	0.008	0.97	0.0	0.06	14.33	0.01	2.298	3.78	0.18	5.2	94.8	0.0	-5.53	0.59	0.82	3.36	3.5	0.004	0.71	0.0	0.04	16.06	0.01	2.054	10.17	0.36	5.3	94.7	0.0	0.88	1.29	0.58	0.83	1.98	10046	1242	2	0	0	0	0	logfile
✔	6SJG	10217	2022-07-05	2019-08-13	3.8	3.98	—	3.8	0.003	0.56	0.0	0.04	12.74	0.01	2.294	4.31	2.90	2.2	97.8	0.0	-3.61	0.81	0.73	1.24	3.8	0.006	0.83	0.0	0.04	16.24	0.00	1.679	17.12	0.12	3.7	96.3	0.0	0.21	1.45	0.84	0.79	1.27	23826	2847	4	54	0	0	0	logfile
✔	6o1U	0605	2022-07-04	2019-02-21	2.8	3.27	—	3.2	0.010	1.08	4.0	0.06	14.75	0.01	2.180	5.37	2.65	4.6	95.4	0.0	-5.22	0.69	0.83	2.95	3.3	0.003	0.71	0.0	0.04	16.08	0.01	2.211	10.25	1.37	4.2	95.8	0.0	0.79	1.22	0.67	0.81	2.56	19612	2456	4	0	0	0	0	logfile
✔	6SJB	10214	2022-07-05	2019-08-13	3.7	3.91	—	3.7	0.003	0.58	0.0	0.04	13.36	0.01	2.227	4.48	2.57	2.3	97.7	0.0	-3.60	0.82	0.81	1.93	3.7	0.009	0.88	0.0	0.05	16.73	0.01	1.987	17.36	0.99	5.6	94.4	0.0	0.18	2.03	0.85	0.86	1.95	24115	2847	4	68	0	0	0	logfile
✔	6PX3	20517	2022-07-04	2019-07-24	4.1	5.90	—	4.1	0.008	0.94	0.0	0.06	26.81	0.01	0.861	4.74	0.45	4.5	95.5	0.1	-0.93	0.89	0.79	—	4.1	0.005	0.70	0.0	0.04	27.56	0.00	2.169	22.14	0.00	4.9	95.1	0.0	-0.17	2.46	0.90	0.81	—	14323	1059	11	290	3	0	0	logfile
✔	6HRB	0258	2022-07-03	2018-09-26	4.0	4.20	3.96	4.0	0.008	0.96	0.0	0.05	9.28	0.01	2.186	6.75	0.26	7.2	92.8	0.0	-4.97	0.74	0.84	—	4.0	0.003	0.76	0.0	0.04	13.56	0.00	2.132	15.05	0.18	4.3	95.7	0.0	-0.40	1.27	0.74	0.84	—	10787	1447	5	0	1	0	0	logfile
✔	6QMB	4594	2022-07-03	2019-02-01	3.6	3.74	3.74	3.7	0.008	0.87	0.0	0.05	14.68	0.01	2.284	3.90	0.00	3.6	96.4	0.0	-3.44	0.75	0.84	2.36	3.7	0.015	1.52	1.0	0.04	16.38	0.00	1.989	14.01	0.09	4.0	96.0	0.0	0.75	1.15	0.75	0.84	1.86	10698	1322	4	0	4	0	0	logfile
✔	6B44	7048	2022-07-05	2017-09-25	2.9	3.00	—	3.0	0.006	0.99	0.0	0.06	14.77	0.01	2.237	5.60	0.43	11.4	88.6	0.0	-4.46	0.65	0.77	3.33	3.0	0.004	0.67	0.0	0.04	17.23	0.00	2.122	10.68	2.54	9.2	90.8	0.0	-1.84	0.99	0.65	0.79	2.64	22681	2879	12	114	0	0	0	logfile
✔	6QMA	4593	2022-07-03	2019-02-01	3.7	3.82	3.69	3.8	0.006	0.88	0.0	0.05	15.24	0.01	1.974	4.79	0.18	2.8	97.2	0.0	-3.00	0.74	0.83	1.26	3.8	0.003	0.62	0.0	0.04	16.76	0.00	2.157	10.56	0.35	3.0	97.0	0.0	1.97	0.58	0.75	0.83	1.34	10716	1324	4	0	4	0	0	logfile

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