Table showing results for June 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6CJQ	7482	2021-06-02	2018-02-26	3.42	3.51	—	3.5	0.012	1.24	0.0	0.06	13.75	0.01	2.306	5.11	0.60	7.0	93.0	0.0	-3.36	0.70	0.84	2.91	3.5	0.003	0.71	0.0	0.04	14.08	0.01	2.135	9.60	0.00	5.6	94.4	0.0	1.00	0.74	0.72	0.85	2.10	12768	1568	8	0	24	0	0	logfile
✔	6HLQ	0239	2021-06-04	2018-09-11	3.18	3.18	—	3.2	0.006	0.89	0.0	0.06	12.12	0.01	1.742	5.16	0.09	4.6	95.4	0.0	-4.49	0.68	0.82	4.22	3.1	0.004	0.64	0.0	0.04	16.42	0.00	1.991	8.85	0.35	3.6	96.4	0.0	-0.58	0.72	0.70	0.87	3.39	32731	3926	22	73	9	0	0	logfile
✔	6E1P	8960	2021-06-02	2018-07-10	3.7	3.93	3.55	3.9	0.010	1.28	1.0	0.06	14.22	0.01	1.571	10.02	0.18	6.9	92.9	0.2	-5.32	0.47	0.68	1.42	3.9	0.003	0.84	0.0	0.04	16.37	0.00	2.162	14.60	0.55	4.5	95.5	0.0	-0.20	2.65	0.53	0.71	1.05	10697	1292	6	0	21	2	0	logfile
✔	6SH3	10192	2021-06-03	2019-08-05	3.4	3.55	—	3.5	0.006	0.91	0.0	0.05	13.40	0.01	2.287	3.59	0.62	6.5	93.5	0.0	-3.29	0.70	0.80	2.63	3.5	0.004	0.67	0.0	0.04	15.66	0.01	2.225	5.71	0.53	5.6	94.4	0.0	-0.58	2.18	0.71	0.82	2.67	21021	2632	14	0	7	0	0	logfile
✔	6NUS	0521	2021-06-01	2019-02-01	3.5	3.62	3.47	3.6	0.016	1.58	0.0	0.09	9.78	0.01	2.301	0.92	0.14	1.2	98.8	0.0	0.30	0.56	0.68	2.07	3.6	0.004	0.67	0.0	0.04	15.08	0.00	2.140	13.51	0.69	3.6	96.4	0.0	0.43	1.50	0.57	0.73	1.61	6632	827	3	0	2	0	0	logfile
✔	6NUR	0520	2021-06-01	2019-02-01	3.1	3.25	3.17	3.3	0.016	1.56	0.0	0.09	10.59	0.01	2.270	2.22	0.52	1.4	98.6	0.0	-0.12	0.64	0.81	4.19	3.3	0.002	0.60	0.0	0.04	14.73	0.00	2.178	6.36	0.31	2.0	98.0	0.0	0.64	0.78	0.59	0.82	3.03	8647	1087	5	0	2	0	0	logfile
✔	6oiS	20080	2021-06-02	2019-04-09	3.6	3.71	—	3.6	0.009	1.05	0.0	0.06	10.80	0.01	2.315	5.76	0.68	4.2	95.8	0.0	-2.46	0.78	0.81	3.12	3.6	0.003	0.60	0.0	0.04	14.88	0.00	2.132	7.99	0.42	2.8	97.2	0.0	1.42	2.27	0.79	0.83	2.54	10732	1365	6	0	0	0	0	logfile
✔	6GSA	0051	2021-06-02	2018-06-13	4.2	5.94	—	5.0	0.011	1.24	4.0	0.09	12.00	0.01	2.189	4.57	1.75	5.1	94.7	0.2	-2.92	0.67	0.44	—	5.0	0.003	0.74	0.0	0.04	12.56	0.00	2.090	20.54	0.06	5.6	94.4	0.0	-0.13	1.75	0.83	0.74	—	16272	1999	5	0	0	0	0	logfile
✔	6CMX	7526	2021-06-02	2018-03-06	3.1	3.31	—	3.3	0.008	1.00	0.0	0.14	13.02	0.01	1.638	21.12	1.51	9.6	90.2	0.2	-3.85	0.72	0.76	3.77	3.3	0.004	0.72	0.0	0.05	16.24	0.00	2.098	12.66	0.40	9.3	90.7	0.0	-2.17	0.73	0.75	0.79	3.00	10139	1300	1	0	17	0	0	logfile
✔	6QWL	4660	2021-06-02	2019-03-05	4.1	4.22	—	4.1	0.008	1.01	0.0	0.06	16.06	0.01	2.214	10.07	0.93	10.8	89.1	0.1	-4.69	0.75	0.74	—	4.1	0.004	0.73	0.0	0.04	15.23	0.01	2.074	17.42	0.09	9.1	90.9	0.0	-1.70	2.49	0.76	0.75	—	10408	1244	5	26	0	0	0	logfile
✔	6E1K	8956	2021-06-02	2018-07-10	3.3	3.68	3.47	3.7	0.019	1.74	1.0	0.08	13.56	0.01	2.047	10.32	1.50	11.4	88.3	0.3	-6.12	0.53	0.67	3.36	3.7	0.003	0.71	0.0	0.04	14.45	0.00	2.077	11.54	0.83	5.4	94.6	0.0	-1.94	0.80	0.61	0.73	1.72	11641	1450	10	0	21	2	0	logfile
✔	6BCL	7082	2021-06-04	2017-10-20	3.54	3.64	—	3.6	0.008	0.96	0.0	0.05	9.61	0.01	2.324	3.07	0.38	5.8	94.2	0.0	-4.83	0.63	0.80	2.42	3.6	0.004	0.68	0.0	0.04	14.04	0.00	2.157	6.51	0.53	4.9	95.1	0.0	1.35	0.90	0.65	0.81	1.94	30474	3868	5	0	2	0	0	logfile
✔	6BCJ	7081	2021-06-03	2017-10-20	3.14	3.22	—	3.2	0.008	0.97	0.0	0.05	9.60	0.01	2.301	2.65	0.38	5.9	94.1	0.0	-4.83	0.68	0.84	3.10	3.2	0.004	0.63	0.0	0.04	14.16	0.00	2.181	6.89	0.22	5.6	94.4	0.0	1.13	0.75	0.71	0.85	1.97	29868	3744	9	0	4	8	0	logfile
✔	6BCo	7083	2021-06-04	2017-10-20	2.88	2.96	—	3.0	0.007	0.98	0.0	0.05	9.77	0.01	2.286	3.71	0.37	5.8	94.2	0.0	-4.72	0.67	0.82	3.73	2.9	0.004	0.61	0.0	0.04	15.01	0.00	2.164	6.67	1.60	4.6	95.4	0.0	1.14	1.28	0.67	0.85	2.60	30432	3808	8	0	4	0	0	logfile
✔	6E0P	8949	2021-06-02	2018-07-06	2.6	2.80	2.51	2.7	0.007	0.85	0.0	0.05	25.48	0.01	2.253	2.30	0.00	4.8	95.2	0.0	-2.18	0.79	0.86	4.43	2.7	0.003	0.65	0.0	0.04	27.23	0.01	2.138	7.18	1.66	3.9	96.1	0.0	1.23	0.52	0.81	0.88	3.57	15567	1220	12	290	0	0	0	logfile
✔	6BCQ	7085	2021-06-04	2017-10-20	3.25	3.34	—	3.3	0.007	1.00	0.0	0.05	9.82	0.01	2.318	3.48	0.25	5.5	94.5	0.0	-4.85	0.64	0.80	3.09	3.3	0.005	0.71	0.0	0.04	14.91	0.01	2.202	8.17	0.31	4.7	95.3	0.0	1.29	0.88	0.64	0.82	1.78	31048	3932	8	0	4	0	0	logfile
✔	6E1N	8958	2021-06-02	2018-07-10	3.7	3.85	3.77	3.8	0.015	1.53	0.0	0.07	15.15	0.01	2.054	10.50	0.37	8.3	91.6	0.2	-5.21	0.49	0.72	1.63	3.8	0.004	0.78	0.0	0.04	16.59	0.01	2.062	13.54	0.47	6.4	93.6	0.0	-0.87	0.93	0.53	0.72	0.32	10682	1278	6	0	24	2	0	logfile
✔	6BX0	7301	2021-06-12	2017-12-15	3.79	4.07	—	4.0	0.010	1.28	180.0	0.08	11.39	0.01	1.342	41.95	2.59	4.5	95.3	0.2	-3.37	0.53	0.67	3.05	4.0	0.005	0.98	0.0	0.05	16.77	0.01	2.002	22.88	1.31	9.2	90.8	0.0	-2.51	4.49	0.63	0.79	2.44	259560	32100	60	0	0	0	0	logfile
✔	6RZB	10061	2021-06-01	2019-06-13	4.1	4.19	3.09	4.2	0.042	2.28	5.0	0.16	17.69	0.01	2.096	9.24	5.37	4.2	95.5	0.3	-2.81	0.68	0.84	—	4.1	0.011	1.43	0.0	0.06	15.64	0.01	1.194	53.01	0.00	4.6	95.4	0.0	-2.25	0.87	0.67	0.81	—	8001	1001	5	1	3	0	0	logfile
✔	6HRF	0260	2021-06-01	2018-09-26	3.3	3.38	2.95	3.5	0.016	1.25	0.0	0.09	13.68	0.01	2.627	7.82	0.00	13.3	86.7	0.0	-4.08	0.38	0.74	2.93	3.4	0.004	0.78	0.0	0.05	17.04	0.00	2.171	8.24	0.50	6.2	93.8	0.0	-3.51	3.74	0.37	0.78	3.35	3522	462	6	0	0	0	0	logfile

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