Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6NMC	0446	2023-08-12	2019-01-10	4.24	4.55	—	4.2	0.014	1.16	6.0	0.07	16.40	0.01	2.015	20.07	2.45	10.2	89.4	0.4	-4.23	0.86	0.76	—	4.2	0.005	0.77	0.0	0.04	14.53	0.00	1.850	22.51	0.07	8.7	91.3	0.0	-1.07	1.84	0.89	0.85	—	12808	1480	8	25	2	6	0	logfile
✔	7MiJ	23853	2023-08-17	2021-04-17	1.98	1.95	—	2.0	0.010	1.38	4.0	0.05	19.92	0.01	2.320	3.08	0.18	2.8	97.2	0.0	-3.96	0.75	0.81	5.48	2.0	0.002	0.51	0.0	0.04	18.05	0.00	2.213	4.43	0.92	2.6	97.4	0.0	1.38	1.08	0.75	0.80	4.57	23010	2556	12	0	38	328	0	logfile
✔	7QEY	13944	2023-08-11	2021-12-03	2.0	2.46	—	2.2	0.005	0.85	0.0	0.03	10.53	0.00	2.199	3.57	2.35	1.7	98.3	0.0	1.74	0.77	0.90	5.27	2.1	0.003	0.67	0.0	0.04	13.25	0.00	2.163	4.76	1.23	2.4	97.6	0.0	3.06	0.57	0.78	0.93	4.32	9467	1092	18	0	30	281	0	logfile
✔	6SCJ	10141	2023-08-24	2019-07-24	3.6	3.92	—	3.8	0.005	0.99	0.0	0.06	10.89	0.01	2.235	4.85	0.14	13.3	86.6	0.1	-4.97	0.78	0.76	1.82	3.8	0.004	0.77	0.0	0.04	14.25	0.00	1.995	12.04	0.32	11.3	88.7	0.0	-2.21	1.63	0.79	0.78	1.39	39884	5102	6	0	36	0	0	logfile
✔	6HiZ	0233	2023-08-19	2018-08-31	3.08	3.20	3.05	3.1	0.009	1.39	0.0	0.06	18.08	0.01	1.866	11.16	12.80	3.2	96.7	0.1	-2.90	0.89	0.91	2.63	3.1	0.002	0.58	0.0	0.04	16.93	0.00	1.989	8.25	0.16	3.3	96.7	0.0	1.26	0.78	0.87	0.89	2.62	76845	9056	33	143	19	3	0	logfile
✔	6TMV	10528	2023-08-11	2019-12-05	3.45	3.57	—	3.5	0.008	1.29	0.0	0.07	13.72	0.00	2.584	1.72	1.04	3.9	96.1	0.0	-3.14	0.81	0.83	2.35	3.5	0.005	0.62	0.0	0.04	15.74	0.00	2.142	8.11	0.24	2.8	97.2	0.0	0.81	1.39	0.83	0.83	1.98	58106	7604	14	0	0	0	0	logfile
✔	7P92	13258	2023-08-11	2021-07-23	2.7	2.17	2.57	2.3	0.003	0.56	1.0	0.04	14.12	0.00	1.985	4.69	0.18	3.7	96.3	0.0	0.23	0.52	0.78	3.78	2.4	0.002	0.52	0.0	0.04	17.07	0.00	2.196	5.77	1.20	2.7	97.3	0.0	0.75	1.88	0.51	0.78	3.47	10436	1322	9	0	12	157	0	logfile
✔	7KF5	22843	2023-08-26	2020-10-13	3.2	3.46	—	3.6	0.003	0.55	0.0	0.04	15.93	0.02	2.007	9.13	0.24	4.2	95.8	0.0	-2.33	0.40	0.71	0.91	3.5	0.004	0.64	0.0	0.04	17.66	0.00	2.030	9.30	0.47	4.8	95.2	0.0	-0.05	1.41	0.39	0.76	1.73	48069	3075	3	0	0	0	24414	logfile
✔	7F8o	31491	2023-08-15	2021-07-02	3.6	3.69	3.45	3.7	0.008	0.88	0.0	0.04	12.86	0.00	2.106	8.68	0.71	4.6	95.4	0.0	0.47	0.61	0.82	3.06	3.6	0.003	0.65	0.0	0.04	14.97	0.00	2.151	11.77	0.41	5.0	95.0	0.0	0.31	0.48	0.61	0.83	2.37	18032	2184	14	0	21	0	0	logfile
✔	7F8N	31490	2023-08-15	2021-07-02	3.4	3.52	3.33	3.5	0.012	1.08	0.0	0.04	16.48	0.01	2.219	10.34	2.55	4.7	95.3	0.0	-0.91	0.62	0.81	2.45	3.5	0.003	0.57	0.0	0.04	14.77	0.00	2.171	12.84	0.16	4.2	95.8	0.0	-0.12	0.45	0.60	0.84	1.98	18522	2163	14	0	49	0	0	logfile
✔	6J6i	0688	2023-08-23	2019-01-15	3.7	3.66	—	3.6	0.008	1.13	0.0	0.06	11.69	0.01	2.132	6.89	0.72	10.1	89.6	0.3	-4.37	0.82	0.83	2.07	3.5	0.003	0.75	0.0	0.04	15.07	0.00	2.090	12.44	0.35	9.4	90.6	0.0	-1.58	0.82	0.82	0.83	1.44	35992	4470	13	0	7	0	0	logfile
✔	7SYF	25524	2023-08-12	2021-11-24	4.2	3.03	3.92	2.2	0.013	1.86	8.0	0.10	14.32	0.01	2.460	1.62	1.31	3.9	96.1	0.0	-1.56	0.67	0.61	—	2.2	0.003	0.78	0.0	0.04	13.94	0.00	1.993	16.84	0.08	3.1	96.9	0.0	0.80	1.17	0.68	0.63	—	11108	1391	1	0	0	0	0	logfile
✔	6L3T	0825	2023-08-16	2019-10-15	2.34	2.41	2.27	2.4	0.010	1.07	0.0	0.05	15.75	0.01	2.306	1.05	3.61	1.0	99.0	0.0	-3.24	0.68	0.86	4.85	2.4	0.002	0.55	0.0	0.03	16.32	0.00	1.992	2.15	1.20	1.1	98.9	0.0	3.02	1.61	0.67	0.87	4.18	19722	1206	18	0	6	204	9588	logfile
✔	7NKQ	12446	2023-08-11	2021-02-18	2.98	3.25	—	3.1	0.004	0.49	0.0	0.04	13.52	0.00	2.018	7.16	0.00	2.7	97.3	0.0	1.39	0.81	0.81	2.98	3.1	0.003	0.48	0.0	0.04	15.71	0.00	2.008	6.87	1.05	2.3	97.7	0.0	2.27	0.33	0.82	0.84	2.51	10621	714	8	0	0	0	5312	logfile
✔	7X0S	32923	2023-08-16	2022-02-22	3.1	3.13	—	3.1	0.004	0.61	5.0	0.05	10.92	0.00	1.018	6.85	3.51	4.8	95.2	0.0	-5.89	0.76	0.77	1.78	3.1	0.003	0.70	1.0	0.04	15.42	0.00	1.877	9.94	0.28	5.7	94.3	0.0	-0.19	4.07	0.80	0.85	1.86	68346	8866	49	0	48	16	0	logfile
✔	6EF0	9042	2023-08-18	2018-08-15	4.43	3.84	—	4.1	0.011	1.07	0.0	0.06	12.59	0.01	2.089	8.55	0.00	16.8	83.2	0.0	-5.24	0.62	0.79	—	4.1	0.003	0.78	0.0	0.04	13.01	0.00	2.112	12.90	0.04	8.3	91.7	0.0	-2.02	2.20	0.62	0.80	—	24748	3318	20	0	6	0	0	logfile
✔	6YE4	10789	2023-08-11	2020-03-24	3.2	3.33	3.07	3.3	0.026	1.69	0.0	0.10	14.61	0.01	2.373	3.02	0.00	0.9	99.1	0.0	-3.36	0.73	0.88	2.50	3.3	0.003	0.49	0.0	0.03	16.29	0.00	2.376	4.96	0.00	2.4	97.6	0.0	3.87	0.94	0.65	0.85	1.22	9140	1180	10	0	5	0	0	logfile
✔	6SD1	10145	2023-08-24	2019-07-26	2.6	2.74	2.55	2.7	0.003	0.53	0.0	0.04	12.42	0.00	2.149	8.45	0.00	4.3	95.7	0.0	-2.90	0.74	0.84	4.92	2.7	0.003	0.55	0.0	0.04	16.74	0.00	2.181	8.49	1.47	0.0	100.0	0.0	2.00	0.59	0.76	0.87	4.33	39369	4983	33	0	0	0	0	logfile
✔	7ZDi	14650	2023-08-11	2022-03-29	2.9	3.06	2.82	3.1	0.013	2.74	0.0	0.04	16.49	0.01	2.378	3.63	0.00	0.9	99.1	0.0	1.10	0.64	0.84	5.30	3.1	0.005	1.48	0.0	0.04	16.61	0.00	2.159	5.01	0.37	1.0	99.0	0.0	3.01	0.30	0.69	0.87	4.42	10284	976	38	0	42	0	0	logfile
✔	7P91	13257	2023-08-16	2021-07-23	2.8	2.26	2.71	2.4	0.003	0.52	0.0	0.04	14.73	0.00	2.062	5.47	0.13	3.6	96.4	0.0	0.31	0.68	0.80	3.48	2.4	0.004	0.60	0.0	0.04	17.51	0.01	2.046	7.51	1.80	4.0	96.0	0.0	0.08	0.40	0.69	0.84	3.37	21419	2681	18	0	23	346	0	logfile

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