Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6K9F	9948	2022-07-04	2019-06-15	3.7	7.50	4.15	7.2	0.002	0.45	0.0	0.03	11.87	0.00	2.356	5.29	0.00	0.0	100.0	0.0	-0.68	0.66	0.76	0.04	7.0	0.004	1.14	0.0	0.05	18.10	0.00	2.005	26.86	0.63	1.3	98.7	0.0	-0.41	3.86	0.67	0.84	0.10	8484	1044	12	0	0	0	0	logfile
✔	7R6L	24281	2022-07-03	2021-06-22	2.85	3.04	—	3.0	0.008	0.89	0.0	0.05	16.80	0.01	1.985	4.24	0.00	0.0	0.0	0.0	—	0.67	0.86	—	3.0	0.006	0.73	0.0	0.04	16.40	0.01	1.882	7.54	0.00	0.0	0.0	0.0	—	0.09	0.64	0.86	—	7857	0	3	366	20	0	0	logfile
✔	6WL1	21815	2022-07-04	2020-04-17	4.0	4.02	—	4.0	0.007	0.81	0.0	0.05	7.85	0.00	2.413	3.17	0.00	0.0	100.0	0.0	-1.08	0.71	0.85	—	4.0	0.004	0.51	0.0	0.04	16.18	0.00	2.242	6.18	1.33	0.0	100.0	0.0	6.14	0.73	0.72	0.86	—	14612	1872	52	0	0	0	0	logfile
✔	7LQi	23487	2022-07-03	2021-02-13	3.5	3.92	—	3.9	0.016	1.40	0.0	0.03	20.42	0.00	2.242	22.86	5.00	0.0	100.0	0.0	-3.42	0.62	0.78	4.80	3.9	0.051	2.84	5.0	0.14	22.95	0.01	1.918	120.83	3.83	46.2	53.8	0.0	-7.03	1.54	0.65	0.83	2.47	8400	800	100	0	0	0	0	logfile
✔	7SAM	24952	2022-07-03	2021-09-22	4.3	6.95	4.38	4.2	0.001	0.39	0.0	0.02	13.28	0.00	1.952	2.96	0.00	0.0	0.0	0.0	—	0.84	0.51	—	4.3	0.006	0.88	0.0	0.04	22.86	0.01	1.817	83.53	0.00	0.0	0.0	0.0	—	5.89	0.95	0.86	—	5399	0	1	169	0	0	1802	logfile
✔	6WL8	21817	2022-07-05	2020-04-18	4.1	4.58	—	4.3	0.005	0.65	0.0	0.05	15.48	0.00	2.395	2.78	0.00	0.0	100.0	0.0	-1.08	0.73	0.86	—	4.2	0.004	0.76	0.0	0.04	14.63	0.00	2.281	14.04	0.00	0.5	99.5	0.0	3.46	2.62	0.74	0.87	—	23850	3074	106	0	0	0	0	logfile
✘	6XL6	22235	2022-07-03	2020-06-28	3.0	3.41	—	3.3	0.005	0.64	0.0	0.04	20.21	0.00	1.396	5.42	0.00	0.0	100.0	0.0	-1.93	0.76	0.83	2.94	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5456	536	6	46	4	0	0	logfile
✔	7LQF	23484	2022-07-03	2021-02-13	3.8	3.13	—	4.0	0.016	1.46	0.0	0.03	18.37	0.00	2.258	22.81	2.08	0.0	100.0	0.0	-4.77	0.59	0.78	4.63	3.2	0.155	6.38	244.0	0.42	26.01	0.03	1.685	217.36	4.43	66.8	30.1	3.1	-9.48	1.76	0.69	0.86	2.76	5376	512	64	0	0	0	0	logfile
✔	6X64	22069	2022-07-04	2020-05-27	3.7	4.01	—	3.7	0.008	1.34	0.0	0.05	9.32	0.01	2.584	0.78	0.00	0.0	0.0	0.0	—	0.68	0.84	—	3.7	0.009	1.23	0.0	0.05	5.42	0.00	2.111	10.24	0.00	0.0	0.0	0.0	—	2.35	0.69	0.86	—	15840	0	36	0	3168	0	0	logfile
✘	7EZ2	31386	2022-07-03	2021-06-01	3.05	2.80	—	3.0	0.002	0.53	0.0	0.03	13.90	0.00	1.218	0.92	0.00	0.0	0.0	0.0	—	0.69	0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8698	0	3	406	31	0	0	logfile
✔	7QiM	13990	2022-07-04	2021-12-15	4.5	3.91	4.55	4.3	0.009	1.34	0.0	0.06	16.22	0.01	1.508	18.84	0.00	0.0	100.0	0.0	-2.74	0.59	0.72	—	4.2	0.004	0.85	0.0	0.05	14.01	0.01	1.939	18.61	0.00	5.1	94.9	0.0	-0.80	1.24	0.59	0.73	—	15550	1860	12	0	180	0	0	logfile
✘	7PM3	13511	2022-07-03	2021-09-01	3.1	3.07	3.12	3.1	0.005	0.86	0.0	0.05	15.41	0.01	1.199	5.42	0.00	0.0	100.0	0.0	-0.98	0.85	0.82	3.08	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8940	1113	6	0	12	0	0	logfile
✔	6QYZ	4680	2022-07-03	2019-03-10	4.6	2.98	—	6.0	0.009	1.14	0.0	0.04	24.59	0.01	1.934	53.60	0.00	0.0	0.0	0.0	—	0.68	0.53	—	2.9	0.006	1.15	0.0	0.07	28.39	0.01	2.043	76.21	0.00	0.0	0.0	0.0	—	4.53	0.71	0.61	—	7300	0	5	345	0	0	0	logfile
✘	7LYT	23601	2022-07-04	2021-03-08	2.9	2.52	2.91	3.0	0.003	0.54	0.0	0.04	18.39	0.00	1.178	7.23	0.33	0.0	100.0	0.0	-1.59	0.82	0.80	2.24	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14354	712	5	92	6	0	6722	logfile
✔	7LYS	23600	2022-07-04	2021-03-08	3.05	2.55	3.08	3.1	0.003	0.54	0.0	0.04	17.65	0.00	1.976	5.89	0.17	0.0	100.0	0.0	-1.46	0.83	0.83	2.05	3.1	0.003	0.55	0.0	0.04	18.40	0.00	2.017	6.11	0.00	3.3	96.7	0.0	1.18	0.35	0.83	0.84	2.09	13573	669	4	89	0	0	6374	logfile
✔	7LQG	23485	2022-07-03	2021-02-13	3.4	3.13	—	3.3	0.016	1.42	0.0	0.04	20.72	0.00	1.842	31.02	14.58	0.0	100.0	0.0	-5.94	0.61	0.81	5.57	3.1	0.110	4.34	179.0	0.30	23.65	0.02	1.811	119.39	4.40	35.9	64.1	0.0	-7.99	1.64	0.67	0.86	3.88	12096	1152	144	0	0	0	0	logfile
✔	6WL0	21814	2022-07-03	2020-04-17	4.4	4.62	—	4.4	0.006	0.82	0.0	0.04	18.91	0.00	2.353	8.18	0.00	0.0	100.0	0.0	-5.48	0.79	0.88	—	4.4	0.005	0.97	0.0	0.04	14.48	0.00	2.146	21.73	0.09	0.4	99.6	0.0	0.45	1.67	0.79	0.85	—	11480	1476	41	0	0	0	0	logfile
✔	6WKX	21812	2022-07-03	2020-04-17	4.2	4.31	—	4.2	0.006	0.59	0.0	0.04	15.11	0.00	2.298	2.52	0.00	0.0	100.0	0.0	-3.67	0.77	0.90	—	4.2	0.004	0.66	0.0	0.04	16.54	0.00	2.187	8.89	0.00	0.0	100.0	0.0	4.22	1.00	0.77	0.89	—	12915	1575	105	0	0	0	0	logfile
✔	6oEH	20020	2022-07-06	2019-03-27	3.8	3.93	—	3.7	0.010	1.38	0.0	0.07	11.62	0.01	2.381	2.81	0.00	0.0	0.0	0.0	—	0.38	0.77	—	3.7	0.007	1.05	0.0	0.04	5.09	0.00	2.203	12.25	0.00	0.0	0.0	0.0	—	0.52	0.40	0.80	—	32900	0	14	0	6580	0	0	logfile
✔	6oEF	20020	2022-07-08	2019-03-27	3.8	3.98	—	3.8	0.007	1.67	0.0	0.07	11.76	0.01	2.376	3.96	0.00	0.0	0.0	0.0	—	0.47	0.78	—	3.8	0.006	1.21	0.0	0.05	6.00	0.00	2.198	8.14	0.00	0.0	0.0	0.0	—	0.58	0.49	0.80	—	51240	0	14	0	10248	0	0	logfile

• ← previous
• Page 2 of 392
• next →