Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7FiY	31606	2023-02-19	2021-08-01	3.4	3.64	—	3.6	0.004	0.82	0.0	0.06	8.14	0.01	2.275	3.69	0.00	2.6	97.4	0.0	-1.10	0.67	0.75	2.44	3.6	0.003	0.58	0.0	0.04	14.14	0.00	2.105	9.47	0.31	2.5	97.5	0.0	1.25	1.71	0.70	0.80	2.00	9367	1152	7	0	6	0	0	logfile
✔	6V11	21009	2023-02-24	2019-11-19	3.8	4.18	3.97	4.1	0.008	1.07	0.0	0.06	11.18	0.01	2.243	6.55	0.90	8.1	91.9	0.0	-4.51	0.79	0.81	1.63	4.1	0.003	0.73	0.0	0.04	14.42	0.00	2.134	11.45	0.33	5.1	94.9	0.0	-0.85	2.18	0.80	0.82	1.07	22626	2915	11	0	5	0	0	logfile
✔	5V8M	8644	2023-02-23	2017-03-22	4.4	4.52	—	4.3	0.015	1.82	0.0	0.11	9.94	0.01	2.124	5.99	0.14	2.4	97.6	0.0	2.25	0.75	0.75	—	4.3	0.005	0.71	0.0	0.04	11.84	0.00	2.078	12.41	0.05	5.3	94.7	0.0	0.60	0.81	0.78	0.81	—	20835	2376	57	0	153	0	0	logfile
✔	7T6P	25723	2023-02-23	2021-12-14	2.8	3.33	—	3.3	0.005	1.13	0.0	0.06	14.54	0.01	2.310	3.72	0.00	4.0	96.0	0.0	-3.37	0.59	0.76	2.86	3.3	0.003	0.66	0.0	0.04	17.05	0.00	2.172	10.89	1.67	4.4	95.6	0.0	0.50	0.50	0.54	0.74	2.44	19412	2424	4	0	0	0	0	logfile
✔	7KUY	23041	2023-02-21	2020-11-25	3.6	3.77	—	3.8	0.006	0.91	0.0	0.06	14.08	0.01	2.208	7.93	0.14	6.3	93.7	0.0	-4.24	0.70	0.86	3.06	3.8	0.003	0.63	0.0	0.04	15.62	0.00	2.130	11.31	0.42	3.5	96.5	0.0	-1.08	0.46	0.70	0.85	2.41	13633	1694	10	0	14	0	0	logfile
✔	7T6K	25717	2023-02-23	2021-12-14	3.0	3.29	—	3.3	0.005	1.05	1.0	0.06	14.25	0.01	2.313	3.34	0.05	3.3	96.7	0.0	-3.51	0.68	0.82	3.50	3.3	0.003	0.60	0.0	0.04	16.76	0.00	2.185	8.57	2.96	2.4	97.6	0.0	0.83	1.16	0.68	0.85	2.92	19412	2424	4	0	0	0	0	logfile
✔	7o6P	12739	2023-02-18	2021-04-12	2.04	2.55	—	2.1	0.008	0.59	0.0	0.05	11.73	0.00	2.140	6.08	0.93	1.8	98.2	0.0	-0.54	0.90	0.88	5.90	2.1	0.002	0.47	0.0	0.04	13.52	0.00	2.251	5.96	0.00	2.0	98.0	0.0	2.22	0.39	0.90	0.92	5.36	8276	1022	8	0	0	268	0	logfile
✔	6VAK	21141	2023-02-24	2019-12-17	3.48	3.85	—	3.8	0.004	0.77	0.0	0.04	14.36	0.00	2.047	7.47	2.96	8.2	91.8	0.0	-2.80	0.73	0.81	3.28	3.8	0.002	0.58	0.0	0.03	16.38	0.00	2.190	5.71	0.72	5.9	94.1	0.0	2.31	0.55	0.70	0.82	2.80	22781	2992	11	0	0	0	0	logfile
✔	7T38	25651	2023-02-23	2021-12-07	3.8	4.03	—	4.0	0.004	0.78	0.0	0.04	13.60	0.01	2.319	4.19	0.39	3.1	96.9	0.0	-1.24	0.68	0.81	1.54	4.0	0.002	0.55	0.0	0.04	15.45	0.00	2.262	6.56	0.44	4.0	96.0	0.0	1.62	1.56	0.70	0.83	1.38	19404	2432	4	0	0	0	0	logfile
✔	7Eo2	31225	2023-02-18	2021-04-21	2.89	3.28	—	3.4	0.005	0.77	0.0	0.05	13.25	0.00	2.152	0.90	0.00	4.1	95.9	0.0	-0.60	0.59	0.72	2.59	3.4	0.003	0.61	0.0	0.04	15.32	0.00	2.143	7.00	1.75	3.0	97.0	0.0	1.01	0.50	0.49	0.66	2.06	8865	1126	6	0	1	0	0	logfile
✔	6SoF	10273	2023-02-27	2019-08-29	4.3	4.23	4.20	4.1	0.006	0.93	0.0	0.05	14.59	0.01	2.017	10.51	0.62	17.7	82.3	0.0	-5.47	0.82	0.72	—	4.1	0.003	0.67	0.0	0.04	13.36	0.00	1.934	15.84	0.00	15.3	84.7	0.0	-3.90	1.45	0.82	0.72	—	30333	1966	12	0	0	0	14564	logfile
✔	7T6Q	25724	2023-02-23	2021-12-14	3.4	3.68	—	3.7	0.006	1.29	2.0	0.06	15.20	0.01	2.282	4.88	0.00	3.9	96.1	0.0	-3.87	0.68	0.77	2.18	3.7	0.004	0.73	0.0	0.04	16.59	0.00	2.187	11.75	0.48	4.7	95.3	0.0	-0.46	1.18	0.71	0.83	2.17	19600	2424	8	0	4	0	0	logfile
✔	7XJ3	33218	2023-02-22	2022-04-14	3.54	3.75	3.55	3.7	0.019	1.03	0.0	0.04	16.43	0.01	2.242	12.56	6.79	8.8	91.2	0.0	-3.52	0.69	0.84	1.76	3.8	0.002	0.57	0.0	0.04	16.37	0.00	2.283	5.90	0.46	4.1	95.9	0.0	0.42	1.21	0.65	0.80	1.22	18493	2428	8	0	14	0	0	logfile
✔	7QL6	14065	2023-02-22	2021-12-19	3.23	3.65	3.39	3.6	0.004	0.57	1.0	0.04	11.16	0.00	2.258	7.26	0.60	3.3	96.7	0.0	0.66	0.72	0.80	3.00	3.6	0.004	0.58	0.0	0.04	14.18	0.00	2.126	10.18	0.22	3.6	96.4	0.0	0.52	1.33	0.71	0.81	3.08	16617	1990	15	0	38	0	0	logfile
✔	3JD3	6632	2023-02-24	2016-03-28	3.6	3.38	—	3.5	0.011	1.02	0.0	0.06	11.40	0.01	2.125	18.17	0.00	10.7	89.3	0.0	-5.32	0.81	0.80	2.72	3.2	0.003	0.65	0.0	0.04	15.34	0.00	2.140	12.61	0.28	4.0	96.0	0.0	-0.42	1.00	0.81	0.83	2.27	24006	2976	12	0	18	0	0	logfile
✔	8DN8	27556	2023-02-20	2022-07-10	3.7	4.03	3.79	4.0	0.003	0.61	0.0	0.04	13.76	0.00	2.157	9.82	0.00	6.0	94.0	0.0	-0.14	0.72	0.82	1.16	3.9	0.003	0.66	0.0	0.04	16.11	0.00	2.185	11.45	0.60	5.6	94.4	0.0	-0.15	0.57	0.72	0.81	1.19	10638	1300	6	0	2	0	0	logfile
✔	8GSZ	34244	2023-02-17	2022-09-07	3.65	3.14	3.68	3.8	0.006	0.86	0.0	0.05	15.61	0.01	2.241	12.76	0.39	2.7	97.3	0.0	-5.38	0.62	0.76	1.72	3.8	0.003	0.69	0.0	0.04	17.49	0.00	2.123	9.67	0.39	4.0	96.0	0.0	-0.70	0.76	0.62	0.76	0.90	4870	620	2	0	0	0	0	logfile
✔	7TJS	25930	2023-02-24	2022-01-17	3.2	3.47	3.27	3.4	0.003	0.60	0.0	0.05	12.62	0.00	1.901	1.77	0.00	1.5	98.5	0.0	0.55	0.78	0.85	3.14	3.4	0.006	0.65	0.0	0.05	15.00	0.00	1.883	5.67	0.16	2.6	97.4	0.0	0.79	0.54	0.73	0.86	2.54	23539	3102	12	0	8	0	0	logfile
✔	6BTM	7286	2023-02-22	2017-12-07	3.4	3.76	—	3.8	0.022	1.40	0.0	0.36	11.31	0.01	1.991	1.68	0.15	7.3	92.7	0.0	-2.53	0.64	0.77	2.80	3.8	0.003	0.88	0.0	0.05	15.09	0.00	1.483	6.80	0.10	5.0	95.0	0.0	0.16	0.76	0.69	0.84	1.91	18934	2361	9	0	10	0	0	logfile
✔	7oH5	12894	2023-02-20	2021-05-09	2.9	3.43	2.96	3.3	0.005	1.12	0.0	0.04	10.74	0.00	1.656	5.05	1.19	4.6	95.4	0.0	-4.15	0.65	0.75	3.22	3.4	0.003	0.84	0.0	0.04	14.59	0.00	1.227	7.77	1.59	4.4	95.5	0.1	-0.65	2.18	0.68	0.78	2.73	11603	1419	8	0	14	2	0	logfile

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