Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7QK5	14038	2022-07-03	2021-12-17	1.92	1.67	1.83	2.2	0.011	1.89	4.0	0.10	10.96	0.01	2.401	0.67	0.00	4.5	95.5	0.0	-1.58	0.32	0.78	6.85	2.2	0.004	0.64	0.0	0.05	18.34	0.01	2.238	4.68	2.74	3.7	96.3	0.0	-1.87	1.49	0.36	0.83	7.41	10485	666	18	0	36	0	5337	logfile
✘	7Z15	14441	2022-07-07	2022-02-24	1.93	2.40	1.98	2.3	0.011	0.95	9.0	0.06	14.81	0.01	1.215	4.09	0.83	1.6	98.4	0.0	1.32	0.83	0.86	6.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	46112	2888	32	0	16	1171	22357	logfile
✘	7N8o	24239	2022-07-03	2021-06-15	1.93	1.73	—	1.9	0.024	2.30	0.0	0.10	19.89	0.01	1.346	14.85	1.91	3.0	96.9	0.1	0.75	0.73	0.75	5.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	54656	5544	113	0	228	1236	0	logfile
✔	7JJP	22358	2022-07-07	2020-07-27	1.94	2.15	2.08	2.1	0.011	0.87	0.0	0.07	13.34	0.01	2.228	2.51	0.56	1.6	98.4	0.0	0.39	0.71	0.85	5.30	2.1	0.004	0.58	0.0	0.04	14.55	0.00	2.082	6.69	0.79	2.0	98.0	0.0	3.29	0.94	0.72	0.88	4.96	40920	2352	36	0	180	396	19104	logfile
✔	7MBX	23749	2022-07-03	2021-04-01	1.95	2.56	1.94	2.4	0.006	0.87	1.0	0.16	12.33	0.01	2.287	2.46	0.45	1.5	98.5	0.0	-0.11	0.72	0.86	4.55	2.3	0.004	0.74	0.0	0.07	15.38	0.00	2.157	6.37	1.00	1.2	98.8	0.0	1.54	0.53	0.72	0.88	4.51	8433	1065	11	0	2	61	0	logfile
✘	7D1T	30547	2022-07-02	2020-09-15	1.95	1.88	1.89	1.9	0.020	1.91	31.0	0.10	18.53	0.02	1.200	3.45	2.40	1.9	97.9	0.2	-0.93	0.77	0.85	6.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	52994	5312	108	0	196	2432	0	logfile
✔	6YBQ	10771	2022-07-06	2020-03-17	1.96	2.06	—	2.0	0.039	1.58	0.0	0.05	15.05	0.01	1.550	4.72	0.00	2.7	97.3	0.0	-1.94	0.82	0.87	6.46	2.0	0.003	0.72	0.0	0.05	15.91	0.00	2.108	4.76	0.41	2.4	97.6	0.0	0.00	0.46	0.84	0.89	6.08	34092	4289	36	0	12	871	0	logfile
✔	7VD8	31910	2022-07-07	2021-09-06	1.96	1.42	2.01	1.7	0.002	0.54	0.0	0.04	16.17	0.00	2.013	3.17	0.03	2.2	97.8	0.0	5.39	0.75	0.80	7.92	1.7	0.002	0.55	0.0	0.04	16.50	0.00	2.001	2.61	0.05	1.5	98.5	0.0	5.41	0.23	0.72	0.78	8.03	38201	4128	72	0	329	2472	0	logfile
✔	6YL3	10835	2022-07-10	2020-04-06	1.98	2.04	1.99	2.0	0.067	3.60	246.0	0.36	16.35	0.02	1.877	4.58	2.74	5.3	94.4	0.4	-2.46	0.78	0.83	6.40	2.0	0.006	0.81	0.0	0.05	16.29	0.01	1.664	5.82	1.62	4.1	95.8	0.1	-0.24	0.52	0.81	0.86	7.07	150156	9552	84	0	24	3672	73044	logfile
✔	7MiJ	23853	2022-07-05	2021-04-17	1.98	1.95	—	2.0	0.010	1.38	4.0	0.05	19.92	0.01	2.320	3.08	0.18	2.8	97.2	0.0	-3.96	0.75	0.81	5.48	2.0	0.003	0.58	0.0	0.04	18.50	0.00	2.156	4.67	1.18	2.8	97.2	0.0	1.00	1.08	0.77	0.82	4.97	23010	2556	12	0	38	328	0	logfile
✘	7Z18	14444	2022-07-07	2022-02-24	1.98	2.40	2.04	2.3	0.005	0.86	0.0	0.06	14.94	0.01	1.214	3.52	1.19	1.9	98.1	0.0	1.45	0.79	0.82	5.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	37659	2432	18	0	10	2	18660	logfile
✔	7K00	22586	2022-07-09	2020-09-02	1.98	1.72	—	1.9	0.006	0.95	3.0	0.05	15.15	0.01	1.194	7.51	6.32	3.9	96.0	0.1	-1.76	0.69	0.83	5.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	149338	5585	117	4555	331	7248	0	logfile
✔	6SAG	10130	2022-07-03	2019-07-16	2.0	2.11	2.01	2.1	0.004	0.65	0.0	0.04	12.99	0.00	0.351	2.79	0.00	2.6	97.4	0.0	-0.33	0.58	0.86	6.64	2.1	0.004	0.63	0.0	0.04	15.40	0.01	2.054	3.11	1.17	3.1	96.9	0.0	1.56	0.73	0.60	0.89	6.90	54080	6120	240	120	240	2840	0	logfile
✔	6WX6	21951	2022-07-04	2020-05-09	2.0	2.11	2.08	2.1	0.006	0.69	0.0	0.04	14.94	0.00	2.277	0.00	0.00	1.2	98.8	0.0	1.60	0.77	0.88	7.70	2.1	0.004	0.55	0.0	0.04	16.24	0.00	2.003	3.40	0.69	1.2	98.8	0.0	4.62	0.53	0.78	0.90	7.39	68332	4128	56	0	8	2420	32664	logfile
✔	7QEY	13944	2022-07-03	2021-12-03	2.0	2.46	—	2.2	0.009	0.57	0.0	0.03	10.74	0.00	2.199	3.57	2.35	1.7	98.3	0.0	1.74	0.77	0.90	5.27	2.1	0.003	0.67	0.0	0.04	13.24	0.00	2.166	4.70	1.74	2.2	97.8	0.0	3.20	0.55	0.78	0.92	4.07	9467	1092	18	0	30	281	0	logfile
✔	6ZJA	11233	2022-07-05	2020-06-28	2.0	2.10	2.09	2.1	0.006	0.86	0.0	0.06	14.19	0.01	1.974	0.84	1.37	4.1	95.9	0.0	-0.40	0.79	0.87	6.97	2.1	0.004	0.72	0.0	0.05	15.95	0.01	1.820	1.85	0.56	4.3	95.7	0.0	0.02	0.39	0.78	0.89	6.77	77951	9684	60	0	36	3191	0	logfile
✔	7oAE	12775	2022-07-03	2021-04-19	2.0	2.65	—	2.2	0.008	0.53	0.0	0.05	9.44	0.00	2.440	0.99	0.00	2.6	97.4	0.0	0.22	0.77	0.91	6.46	2.2	0.002	0.52	0.0	0.04	15.06	0.00	2.223	5.99	0.38	1.8	98.2	0.0	0.44	2.53	0.78	0.92	6.31	12768	1680	42	0	0	0	0	logfile
✘	7RCV	24407	2022-07-03	2021-07-08	2.01	1.78	—	1.9	0.023	2.29	0.0	0.10	19.88	0.01	1.344	14.01	1.99	2.6	97.4	0.0	0.92	0.78	0.79	5.10	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	54656	5544	114	0	228	1236	0	logfile
✔	7o6P	12739	2022-07-03	2021-04-12	2.04	2.55	—	2.1	0.008	0.59	0.0	0.05	11.73	0.00	2.140	6.08	0.93	1.8	98.2	0.0	-0.54	0.90	0.88	5.90	2.1	0.004	0.50	0.0	0.04	13.65	0.00	2.240	5.03	0.12	1.9	98.1	0.0	1.99	0.38	0.90	0.92	5.42	8276	1022	8	0	0	268	0	logfile
✘	7F4V	31455	2022-07-04	2021-06-21	2.04	1.80	—	2.0	0.025	2.41	0.0	0.08	19.51	0.03	1.163	4.76	2.78	3.0	96.9	0.1	-2.15	0.70	0.83	6.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	67641	6336	78	0	453	402	0	logfile

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