Table showing results for June 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6YL3	10835	2021-06-05	2020-04-06	1.98	2.04	1.99	2.0	0.067	3.60	246.0	0.36	16.35	0.02	1.877	4.38	2.74	5.3	94.4	0.4	-2.46	0.78	0.83	6.40	2.0	0.005	0.81	0.0	0.05	16.26	0.01	1.730	5.48	1.50	4.1	95.7	0.2	-0.18	0.53	0.82	0.86	7.05	150156	9552	84	0	24	3672	73044	logfile
✘	6ZJA	11233	2021-06-02	2020-06-28	2.0	2.10	2.09	2.1	0.005	0.86	0.0	0.06	14.30	0.01	1.974	0.60	1.37	4.1	95.9	0.0	-0.40	0.79	0.87	6.97	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	77951	9684	60	0	36	3191	0	logfile
✔	6WX6	21951	2021-06-01	2020-05-09	2.0	2.10	2.08	2.1	0.006	0.69	0.0	0.04	14.94	0.00	2.277	0.00	0.00	1.2	98.8	0.0	1.60	0.77	0.88	7.70	2.1	0.004	0.54	0.0	0.04	16.22	0.00	2.001	2.31	0.69	1.2	98.8	0.0	4.73	0.53	0.78	0.89	7.36	68332	4128	56	0	8	2420	32664	logfile
✔	6SAG	10130	2021-06-05	2019-07-16	2.0	2.11	2.01	2.1	0.004	0.65	0.0	0.04	12.99	0.00	0.351	2.79	0.00	2.6	97.4	0.0	-0.33	0.58	0.86	6.64	2.1	0.003	0.62	0.0	0.04	15.22	0.01	2.044	2.91	1.22	3.2	96.8	0.0	1.50	0.73	0.59	0.88	6.92	54080	6120	240	120	240	2840	0	logfile
✔	7JSX	22462	2021-06-04	2020-08-16	2.06	2.05	—	2.1	0.022	1.67	2.0	0.11	11.97	0.01	2.201	6.73	1.26	3.9	96.1	0.0	-1.03	0.74	0.76	5.10	2.0	0.004	0.69	0.0	0.05	14.48	0.00	2.145	8.01	0.69	2.5	97.5	0.0	0.89	0.64	0.82	0.89	6.21	38813	4832	40	0	0	1141	0	logfile
✘	7KJR	22898	2021-06-01	2020-10-26	2.08	2.52	2.15	2.4	0.007	0.89	0.0	0.05	17.13	0.00	2.254	7.60	0.25	1.8	98.2	0.0	1.13	0.68	0.87	5.29	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3840	448	8	0	2	122	0	logfile
✘	7D1U	30548	2021-06-05	2020-09-15	2.08	1.94	2.04	2.0	0.017	1.69	27.0	0.09	18.17	0.02	1.202	3.96	3.09	2.3	97.5	0.2	-1.36	0.74	0.87	6.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	52655	5312	106	0	196	2121	0	logfile
✔	6X19	21993	2021-06-02	2020-05-18	2.1	2.20	2.11	2.1	0.009	1.48	6.0	0.08	14.12	0.01	2.134	12.47	1.01	2.7	97.3	0.1	-1.61	0.73	0.84	4.93	2.2	0.003	0.80	0.0	0.04	16.71	0.00	2.132	6.38	1.10	2.0	98.0	0.0	1.16	1.56	0.72	0.87	4.45	10277	1258	9	0	1	136	0	logfile
✔	7o6E	12738	2021-06-04	2021-04-10	2.1	1.78	2.15	1.6	0.017	1.10	0.0	0.07	18.13	0.01	2.110	3.49	0.00	2.3	97.7	0.0	2.10	0.87	0.88	6.02	1.6	0.003	0.47	0.0	0.03	18.11	0.01	2.219	3.33	0.52	1.0	99.0	0.0	4.44	0.29	0.87	0.89	5.32	35304	4248	48	0	0	1392	0	logfile
✘	6PXM	20521	2021-06-04	2019-07-26	2.1	2.33	2.32	2.4	0.008	0.71	0.0	0.04	16.03	0.00	2.392	1.61	0.00	0.6	99.4	0.0	-3.44	0.79	0.89	5.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32736	4080	24	0	0	0	0	logfile
✘	6XZ7	10655	2021-06-03	2020-02-03	2.1	2.05	2.12	2.1	0.007	0.77	1.0	0.05	14.33	0.01	1.128	6.27	3.26	2.8	96.8	0.4	-2.20	0.41	0.69	5.50	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	94915	3351	45	3169	179	528	0	logfile
✔	6LXV	30007	2021-06-05	2020-02-12	2.1	2.18	—	2.2	0.025	1.66	0.0	0.12	16.07	0.01	2.196	1.97	2.81	3.9	95.9	0.1	-1.79	0.78	0.91	6.69	2.2	0.002	0.55	0.0	0.04	16.52	0.00	2.211	4.23	0.90	2.4	97.6	0.0	1.09	0.93	0.78	0.90	6.10	54924	6448	24	0	16	2967	0	logfile
✔	7JFo	22308	2021-06-04	2020-07-17	2.13	2.12	—	2.1	0.022	1.67	2.0	0.11	12.07	0.01	2.198	6.67	1.23	3.9	96.1	0.0	-0.96	0.72	0.77	6.96	2.1	0.002	0.58	0.0	0.04	14.43	0.00	2.193	6.77	1.00	2.0	98.0	0.0	1.44	0.79	0.70	0.75	5.59	38958	4832	40	0	0	1198	0	logfile
✔	6KQK	0753	2021-06-05	2019-08-18	2.17	3.14	—	2.8	0.019	1.06	12.0	0.07	15.37	0.00	1.876	10.85	0.00	7.4	92.6	0.0	-4.38	0.82	0.84	4.45	2.8	0.003	0.73	1.0	0.12	16.37	0.00	1.878	8.75	0.84	4.8	95.2	0.0	0.37	1.65	0.83	0.86	4.35	63373	3936	24	0	48	0	31225	logfile
✘	6X8M	22094	2021-06-01	2020-06-01	2.2	2.07	2.27	2.2	0.005	0.63	0.0	0.05	13.91	0.01	2.264	5.26	0.82	3.3	96.7	0.0	-1.41	0.74	0.86	6.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	133440	16800	60	0	0	0	0	logfile
✔	6R7G	4740	2021-06-03	2019-03-28	2.2	2.28	—	2.3	0.006	0.85	0.0	0.05	13.63	0.01	1.880	1.89	3.05	4.3	95.7	0.0	-2.46	0.58	0.88	6.31	2.3	0.003	0.56	0.0	0.04	14.51	0.00	2.199	4.28	0.56	4.4	95.6	0.0	1.72	0.91	0.58	0.89	6.07	22012	2717	27	69	0	92	0	logfile
✔	6PJ6	20353	2021-06-06	2019-06-27	2.2	2.48	—	2.5	0.011	1.06	14.0	0.06	15.16	0.02	1.227	5.23	2.25	5.6	94.4	0.1	-2.65	0.62	0.84	4.58	2.5	0.008	0.79	0.0	0.05	15.82	0.01	1.008	7.99	2.65	6.0	94.0	0.0	-1.12	1.31	0.64	0.86	4.49	154542	3356	67	3016	187	3897	59624	logfile
✔	6DRV	8908	2021-06-04	2018-06-13	2.2	2.30	2.26	2.3	0.017	1.45	0.0	0.08	12.56	0.02	2.116	2.95	0.23	6.8	91.1	2.1	-1.87	0.59	0.79	5.89	2.3	0.006	0.81	0.0	0.05	16.49	0.01	2.149	6.53	1.57	3.0	97.0	0.0	0.18	1.48	0.74	0.89	6.03	32888	4096	4	0	0	0	0	logfile
✔	7BGL	12183	2021-06-05	2021-01-07	2.2	2.57	2.32	2.5	0.008	0.65	0.0	0.08	19.44	0.00	1.980	29.57	2.50	7.3	92.7	0.0	0.56	0.73	0.86	3.07	2.4	0.005	0.69	0.0	0.05	16.77	0.00	2.172	8.25	3.38	8.6	91.4	0.0	-0.28	0.43	0.75	0.90	3.21	120484	15626	104	0	52	0	0	logfile
✔	7LXY	23579	2021-06-04	2021-03-05	2.2	2.32	2.27	2.3	0.011	1.22	0.0	0.07	11.01	0.01	2.182	1.39	0.09	1.8	98.2	0.0	0.45	0.75	0.81	4.97	2.3	0.004	0.65	0.0	0.05	14.34	0.00	2.016	5.31	1.42	1.9	98.1	0.0	0.98	0.52	0.77	0.84	4.55	33987	4446	36	0	69	729	0	logfile

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