Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7NJS	12417	2022-05-15	2021-02-17	2.46	2.50	—	2.2	0.002	0.50	0.0	0.04	16.68	0.00	1.978	4.15	1.22	1.7	98.3	0.0	2.22	0.85	0.88	4.05	2.2	0.005	0.54	0.0	0.04	16.79	0.00	1.664	4.77	1.59	2.5	97.5	0.0	1.80	0.24	0.86	0.90	4.20	74642	4932	31	0	11	16	37346	logfile
✔	7P0M	13148	2022-05-15	2021-06-30	2.75	3.51	2.75	2.7	0.002	0.44	0.0	0.04	16.31	0.00	1.800	7.70	1.88	1.7	98.3	0.0	1.65	0.95	0.88	2.52	2.8	0.002	0.49	0.0	0.04	16.49	0.00	2.005	9.02	2.07	1.7	98.3	0.0	1.67	0.24	0.96	0.89	2.22	25185	3185	19	0	45	0	0	logfile
✔	7NL0	12453	2022-05-13	2021-02-19	3.5	3.08	—	3.0	0.006	0.71	0.0	0.04	29.75	0.00	2.147	12.27	0.00	4.1	95.9	0.0	0.67	0.78	0.81	3.10	3.1	0.003	0.60	0.0	0.04	30.05	0.00	2.226	11.20	0.16	2.7	97.3	0.0	2.26	0.24	0.78	0.81	2.84	11363	755	10	262	0	0	0	logfile
✔	7A7C	11677	2022-05-13	2020-08-27	3.16	3.66	3.23	3.5	0.003	0.54	0.0	0.04	13.51	0.00	2.199	6.79	0.00	4.5	95.5	0.0	-0.97	0.82	0.87	3.57	3.5	0.005	0.55	0.0	0.04	14.63	0.00	2.108	6.90	0.11	5.1	94.9	0.0	-0.29	0.24	0.83	0.89	3.27	9387	1226	2	0	1	0	0	logfile
✔	7RZT	24777	2022-05-12	2021-08-27	2.35	2.27	—	2.1	0.005	0.32	0.0	0.03	14.89	0.00	2.388	3.83	0.00	2.9	97.1	0.0	2.81	0.77	0.79	2.62	2.0	0.003	0.32	0.0	0.03	15.54	0.00	2.332	5.44	0.35	0.0	100.0	0.0	6.21	0.24	0.80	0.82	3.03	2451	324	6	0	0	0	0	logfile
✔	7MW3	24061	2022-05-16	2021-05-15	3.15	3.04	—	3.0	0.004	0.68	1.0	0.07	13.41	0.01	1.549	7.71	0.33	3.5	96.1	0.4	-0.38	0.82	0.83	3.24	3.0	0.004	0.74	0.0	0.05	14.32	0.01	1.960	9.00	0.11	3.6	96.1	0.3	-0.31	0.25	0.83	0.85	3.14	33825	4295	33	0	72	0	0	logfile
✔	7NTC	12587	2022-05-16	2021-03-09	3.6	4.35	3.76	4.1	0.004	0.60	0.0	0.05	14.34	0.00	2.165	7.67	0.00	6.7	93.2	0.1	-0.97	0.84	0.83	1.67	4.1	0.008	0.79	1.0	0.04	15.28	0.00	2.052	8.99	0.09	6.9	92.9	0.1	-0.91	0.25	0.83	0.82	1.61	30005	3698	33	0	81	0	0	logfile
✔	7T4N	25681	2022-05-12	2021-12-10	2.35	2.66	2.38	2.5	0.002	0.42	0.0	0.04	16.22	0.00	2.207	4.39	1.25	1.0	99.0	0.0	0.87	0.63	0.85	3.82	2.6	0.002	0.46	0.0	0.04	16.43	0.00	2.291	6.16	1.94	1.5	98.5	0.0	1.69	0.25	0.66	0.87	3.63	6476	803	2	0	0	0	0	logfile
✔	7UB6	26436	2022-05-15	2022-03-14	3.52	3.83	3.48	3.6	0.004	0.64	0.0	0.05	13.00	0.01	2.229	3.41	0.04	2.6	97.4	0.0	-0.83	0.85	0.85	2.91	3.6	0.006	0.58	0.0	0.04	13.93	0.00	2.104	5.60	0.04	4.1	95.9	0.0	0.06	0.26	0.85	0.87	3.02	24762	3105	10	0	36	0	0	logfile
✔	7V2R	31647	2022-05-14	2021-08-09	2.6	2.62	—	2.6	0.008	0.91	13.0	0.06	17.44	0.01	1.360	9.11	1.24	3.6	96.2	0.1	1.07	0.78	0.87	3.78	2.6	0.004	0.60	0.0	0.04	17.29	0.00	2.147	6.49	1.68	4.0	95.9	0.1	0.95	0.26	0.79	0.89	3.53	68260	8270	68	0	47	0	0	logfile
✔	6PCR	20305	2022-05-15	2019-06-18	2.5	3.04	—	2.9	0.010	0.51	0.0	0.03	12.78	0.02	1.808	2.74	2.36	5.2	94.6	0.2	-3.36	0.72	0.89	4.33	2.9	0.006	0.65	0.0	0.04	13.75	0.01	1.918	6.25	2.49	5.2	94.7	0.1	-1.27	0.26	0.72	0.91	4.45	72166	967	8	3015	1	0	0	logfile
✔	7V2L	31655	2022-05-12	2021-08-09	3.3	3.14	3.24	3.1	0.008	1.07	1.0	0.10	16.30	0.00	2.214	5.72	0.09	6.7	93.1	0.2	-0.61	0.78	0.87	2.42	3.1	0.007	0.69	0.0	0.04	16.94	0.01	2.047	8.58	0.59	8.0	91.9	0.1	-0.56	0.26	0.79	0.88	2.06	53410	2621	24	1507	2	0	0	logfile
✔	7K5i	22681	2022-05-15	2020-09-16	2.9	3.01	—	3.0	0.004	0.63	0.0	0.04	15.78	0.01	2.031	6.60	0.00	3.7	96.3	0.0	-1.25	0.76	0.82	3.57	3.0	0.008	0.86	0.0	0.05	17.16	0.01	2.039	7.36	2.64	4.7	95.2	0.0	-0.76	0.26	0.79	0.84	3.15	74540	4881	40	1665	4	0	0	logfile
✔	7V7o	31776	2022-05-15	2021-08-21	2.9	3.72	—	3.2	0.007	0.63	0.0	0.05	13.67	0.00	2.158	7.15	0.00	5.5	94.4	0.1	-0.05	0.89	0.88	2.42	3.2	0.009	0.71	0.0	0.05	14.90	0.00	2.097	8.19	0.96	5.8	94.1	0.1	-0.03	0.26	0.89	0.88	2.14	25325	3092	41	0	83	0	0	logfile
✔	7V7N	31775	2022-05-15	2021-08-21	2.9	3.77	—	3.2	0.004	0.55	0.0	0.05	13.44	0.00	2.171	6.70	0.00	5.4	94.4	0.1	0.11	0.89	0.87	2.63	3.3	0.006	0.63	0.0	0.05	14.79	0.00	2.155	7.92	1.40	5.8	94.1	0.1	0.07	0.26	0.89	0.88	2.19	25430	3101	42	0	85	0	0	logfile
✔	7VLK	32023	2022-05-16	2021-10-04	2.27	2.77	—	2.6	0.002	0.50	0.0	0.04	17.01	0.00	2.195	6.63	2.51	2.0	98.0	0.0	1.38	0.76	0.84	3.20	2.6	0.003	0.56	0.0	0.04	17.13	0.00	2.162	6.68	2.98	2.6	97.4	0.0	1.39	0.27	0.77	0.86	3.26	28774	3698	12	0	0	0	0	logfile
✔	6XL6	22235	2022-05-12	2020-06-28	3.0	3.41	—	3.3	0.033	0.71	0.0	0.10	20.19	0.00	2.257	5.42	0.00	0.0	100.0	0.0	-1.93	0.76	0.83	2.94	3.3	0.006	0.81	0.0	0.07	20.85	0.01	2.004	11.44	0.61	0.0	100.0	0.0	-1.45	0.27	0.75	0.84	3.03	5456	536	6	46	4	0	0	logfile
✔	6YPU	10869	2022-05-16	2020-04-16	2.9	2.97	2.78	2.9	0.012	0.99	0.0	0.06	16.54	0.01	1.849	6.04	11.02	9.3	90.5	0.2	-3.96	0.78	0.85	2.54	2.9	0.004	0.59	0.0	0.04	15.86	0.00	1.871	5.18	7.52	6.1	93.9	0.0	-0.91	0.27	0.79	0.86	2.25	33322	1496	17	1040	60	0	0	logfile
✔	7V7R	31779	2022-05-15	2021-08-21	2.9	3.74	—	3.2	0.003	0.54	0.0	0.04	13.33	0.00	2.163	6.36	0.00	4.5	95.4	0.1	0.06	0.89	0.87	2.64	3.2	0.005	0.59	0.0	0.04	14.60	0.00	2.144	7.28	1.11	4.9	95.0	0.1	0.20	0.27	0.88	0.87	2.29	25362	3095	42	0	84	0	0	logfile
✔	7TMQ	25999	2022-05-16	2022-01-19	3.3	3.42	—	3.4	0.004	0.57	2.0	0.04	12.67	0.00	2.026	10.03	0.38	2.7	97.3	0.0	1.28	0.77	0.83	3.33	3.3	0.003	0.53	0.0	0.04	13.93	0.00	1.963	9.43	0.43	2.7	97.3	0.0	1.28	0.27	0.79	0.86	2.85	31642	4736	16	0	2	0	0	logfile

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