Table showing results for September 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6YPU	10869	2021-09-05	2020-04-16	2.9	2.97	2.78	2.9	0.012	0.99	0.0	0.06	16.54	0.01	1.849	5.98	11.02	9.3	90.5	0.2	-3.96	0.78	0.85	2.54	2.9	0.004	0.57	0.0	0.04	15.77	0.00	1.912	4.99	6.91	5.7	94.3	0.0	-0.75	0.30	0.80	0.89	2.33	33322	1496	17	1040	60	0	0	logfile
✔	7ENN	31217	2021-09-03	2021-04-18	2.8	3.21	—	3.1	0.005	0.66	0.0	0.04	25.33	0.00	2.127	7.99	0.00	4.5	95.4	0.1	-0.16	0.84	0.87	4.06	3.1	0.005	0.60	0.0	0.04	26.14	0.00	2.101	5.83	1.19	4.3	95.7	0.0	1.05	0.30	0.85	0.89	3.48	16319	1300	12	292	2	0	0	logfile
✔	7MR2	23954	2021-09-03	2021-05-07	4.3	4.72	—	4.5	0.003	0.75	0.0	0.05	14.96	0.01	2.257	5.71	0.00	5.1	94.9	0.0	-1.32	0.90	0.84	—	4.5	0.002	0.54	0.0	0.04	14.85	0.00	2.157	9.37	0.00	4.7	95.3	0.0	0.31	0.30	0.90	0.84	—	16671	2075	3	0	0	0	0	logfile
✔	7BC6	12140	2021-09-02	2020-12-18	3.2	3.48	3.20	3.4	0.008	0.90	0.0	0.05	13.65	0.01	2.145	9.52	0.92	7.0	93.0	0.0	-1.77	0.64	0.85	2.92	3.4	0.003	0.65	0.0	0.04	15.22	0.00	2.193	8.21	0.23	4.4	95.6	0.0	0.46	0.31	0.60	0.84	1.94	4178	549	2	0	0	0	0	logfile
✔	6X43	22039	2021-09-06	2020-05-22	3.6	3.68	—	3.6	0.010	1.02	0.0	0.06	16.79	0.01	1.966	10.22	0.17	9.1	90.7	0.2	-2.48	0.77	0.84	2.22	3.6	0.008	0.82	1.0	0.04	17.72	0.00	1.982	13.93	0.17	6.8	93.1	0.1	-1.44	0.31	0.78	0.83	1.77	36055	4316	11	111	5	0	0	logfile
✔	6PCR	20305	2021-09-04	2019-06-18	2.5	3.04	—	2.9	0.010	0.51	0.0	0.03	12.78	0.02	1.808	2.70	2.36	5.2	94.6	0.2	-3.36	0.72	0.89	4.33	2.9	0.008	0.69	0.0	0.04	14.08	0.01	2.006	6.70	1.83	5.6	94.3	0.1	-1.26	0.31	0.73	0.91	4.51	72166	967	8	3015	1	0	0	logfile
✔	7K0i	22598	2021-09-03	2020-09-04	3.3	3.75	—	3.7	0.006	0.63	0.0	0.05	13.19	0.00	2.222	6.19	0.25	4.0	96.0	0.0	0.10	0.72	0.81	2.93	3.7	0.004	0.56	0.0	0.04	14.26	0.00	2.229	5.80	0.19	4.2	95.8	0.0	0.43	0.31	0.76	0.83	2.42	15366	1954	10	0	6	0	0	logfile
✔	6RZZ	10068	2021-09-05	2019-06-13	3.2	3.30	—	3.2	0.007	0.89	4.0	0.05	16.10	0.01	1.568	4.26	1.18	6.3	93.6	0.1	-4.04	0.86	0.88	3.21	3.2	0.006	0.62	1.0	0.04	16.26	0.00	2.016	8.58	0.80	6.6	93.4	0.0	-1.62	0.31	0.87	0.90	2.81	134359	7586	55	3423	220	0	0	logfile
✔	7LYA	23590	2021-09-03	2021-03-06	2.91	3.17	2.99	3.2	0.007	0.67	0.0	0.04	27.51	0.00	1.325	3.53	0.16	2.5	97.5	0.0	-1.91	0.70	0.84	2.92	3.2	0.003	0.54	0.0	0.03	27.84	0.00	2.164	5.41	0.78	1.9	98.1	0.0	2.71	0.31	0.74	0.86	2.17	12098	767	10	293	0	0	0	logfile
✔	7KMS	22927	2021-09-06	2020-11-03	3.64	4.47	3.77	3.7	0.002	0.46	0.0	0.04	13.82	0.00	2.079	3.31	0.00	4.3	95.7	0.0	0.04	0.86	0.79	1.47	3.7	0.007	0.74	0.0	0.04	14.75	0.00	1.780	9.18	0.05	4.5	95.5	0.0	-0.25	0.32	0.87	0.81	1.34	39677	4887	20	0	71	0	0	logfile
✔	7MR3	23955	2021-09-04	2021-05-07	3.6	4.01	—	3.9	0.005	0.84	0.0	0.05	16.39	0.01	2.250	5.31	0.00	6.5	93.5	0.0	-1.62	0.83	0.82	1.78	3.9	0.002	0.57	0.0	0.04	17.73	0.00	2.175	8.49	0.08	5.0	95.0	0.0	0.41	0.32	0.83	0.83	1.35	23615	2854	5	40	0	0	0	logfile
✔	6YS5	10892	2021-09-03	2020-04-21	3.0	3.05	2.83	3.0	0.007	0.72	0.0	0.05	15.84	0.01	1.880	5.25	7.15	7.4	92.6	0.0	-3.10	0.80	0.87	2.82	3.0	0.005	0.62	0.0	0.04	15.97	0.01	1.936	5.42	4.67	7.1	92.9	0.0	-0.22	0.32	0.81	0.90	2.86	16864	852	13	477	24	0	0	logfile
✔	6ZXA	11516	2021-09-02	2020-07-29	2.38	2.34	—	2.3	0.019	3.63	0.0	0.07	20.59	0.01	2.324	9.45	5.21	12.8	87.2	0.0	-1.00	0.75	0.90	5.13	2.3	0.026	2.78	0.0	0.05	21.30	0.01	2.229	12.30	2.38	12.5	87.5	0.0	0.94	0.32	0.75	0.87	4.36	8442	791	28	0	35	0	0	logfile
✔	7K78	22696	2021-09-03	2020-09-22	3.1	3.20	—	3.2	0.004	0.69	0.0	0.04	27.09	0.01	2.149	8.36	0.20	2.7	97.3	0.0	0.24	0.73	0.84	2.54	3.2	0.007	0.86	0.0	0.03	26.79	0.01	2.177	8.05	0.00	3.5	96.5	0.0	1.45	0.32	0.74	0.87	2.41	14125	1198	12	232	0	0	0	logfile
✔	6M52	30083	2021-09-05	2020-03-09	2.6	2.82	—	2.8	0.009	0.97	0.0	0.06	15.32	0.00	2.390	0.63	0.00	4.7	95.3	0.0	-0.23	0.69	0.86	3.58	2.8	0.004	0.61	0.0	0.04	17.67	0.00	2.335	0.92	1.24	3.6	96.4	0.0	3.56	0.32	0.79	0.90	2.42	33382	4104	38	0	6	8	0	logfile
✔	7NNP	12482	2021-09-03	2021-02-25	3.2	2.99	3.18	3.2	0.006	0.92	0.0	0.18	15.38	0.01	2.223	5.43	0.00	3.5	96.5	0.0	-0.72	0.67	0.82	2.17	3.2	0.003	0.55	0.0	0.04	15.91	0.00	2.179	9.27	0.09	3.2	96.8	0.0	0.74	0.32	0.70	0.85	1.94	11096	1456	6	0	11	0	0	logfile
✔	6X16	21990	2021-09-02	2020-05-18	3.39	3.34	—	3.4	0.005	0.98	0.0	0.05	15.10	0.01	2.322	3.97	0.31	4.8	95.2	0.0	-3.86	0.40	0.73	1.79	3.4	0.003	0.57	0.0	0.04	15.08	0.00	2.202	7.73	0.00	3.9	96.1	0.0	0.86	0.33	0.48	0.78	1.37	9438	1248	6	0	6	0	0	logfile
✔	7K3V	22657	2021-09-06	2020-09-14	1.34	1.44	—	1.4	0.005	0.80	0.0	0.04	14.68	0.00	0.211	2.71	0.00	1.2	98.8	0.0	3.60	0.69	0.78	8.90	1.4	0.005	0.79	0.0	0.04	14.91	0.01	1.992	2.40	0.61	1.2	98.8	0.0	3.81	0.33	0.72	0.82	8.91	38406	4128	72	0	334	2672	0	logfile
✔	7NTC	12587	2021-09-05	2021-03-09	3.6	4.35	3.76	4.1	0.015	1.07	0.0	0.05	14.43	0.00	2.165	7.48	0.00	6.7	93.2	0.1	-0.97	0.84	0.83	1.67	4.1	0.008	0.85	1.0	0.04	15.69	0.00	2.157	8.65	0.16	6.3	93.6	0.1	-0.74	0.33	0.84	0.84	1.55	30005	3698	33	0	81	0	0	logfile
✔	6o0Y	0584	2021-09-03	2019-02-17	3.37	4.01	—	3.7	0.005	0.74	0.0	0.05	16.71	0.01	2.272	2.52	0.37	5.5	94.5	0.0	-4.11	0.85	0.88	2.93	3.7	0.009	0.72	0.0	0.04	17.17	0.00	2.021	7.57	0.25	7.1	92.9	0.0	-0.71	0.33	0.86	0.89	2.70	11828	1146	5	150	0	0	0	logfile

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