Table showing results for June 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7JRG	22445	2021-06-04	2020-08-12	3.2	3.47	3.19	3.3	0.009	0.85	0.0	0.23	14.73	0.00	2.045	10.03	0.09	6.8	93.1	0.1	0.25	0.79	0.88	2.78	3.3	0.003	0.59	0.0	0.04	15.70	0.00	2.106	7.40	0.06	5.4	94.6	0.0	1.13	0.31	0.78	0.89	1.95	32930	3983	30	0	37	0	0	logfile
✔	6K7i	9934	2021-06-02	2019-06-07	3.22	3.34	3.11	3.3	0.031	1.58	0.0	0.18	15.17	0.01	2.253	6.02	0.78	8.9	90.7	0.4	-4.41	0.60	0.84	3.87	3.3	0.005	0.92	0.0	0.06	16.28	0.01	2.167	12.80	0.43	8.4	91.4	0.2	-2.97	0.31	0.70	0.88	3.51	10590	1310	4	0	7	0	0	logfile
✔	6K7H	9932	2021-06-02	2019-06-07	3.22	3.37	3.03	3.3	0.029	1.41	0.0	0.18	15.66	0.01	2.274	5.60	1.13	6.5	93.5	0.0	-3.82	0.65	0.85	3.45	3.3	0.006	0.97	0.0	0.06	16.64	0.01	2.220	12.15	0.52	6.6	93.4	0.0	-2.84	0.32	0.69	0.89	3.14	10577	1312	2	0	6	0	0	logfile
✔	7CRP	30455	2021-06-03	2020-08-14	3.2	3.29	—	3.3	0.006	0.74	0.0	0.04	27.13	0.01	1.478	6.60	0.96	8.0	91.8	0.1	-5.47	0.73	0.83	3.50	3.3	0.004	0.64	0.0	0.04	27.37	0.01	2.192	5.41	0.24	6.7	93.3	0.0	-3.25	0.32	0.76	0.87	2.92	14833	1002	11	336	4	0	0	logfile
✔	6M54	30084	2021-06-04	2020-03-09	2.4	2.57	—	2.5	0.012	1.16	0.0	0.07	14.96	0.01	2.591	0.71	0.00	4.1	95.9	0.0	-0.37	0.69	0.85	5.34	2.5	0.004	0.68	0.0	0.04	16.69	0.00	2.353	0.97	0.48	3.8	96.2	0.0	3.75	0.32	0.81	0.91	3.59	33382	4104	38	0	6	8	0	logfile
✔	7K5K	22682	2021-06-03	2020-09-17	2.66	2.76	2.81	2.7	0.007	0.69	0.0	0.05	15.27	0.00	1.722	6.82	4.06	10.2	89.7	0.0	-3.21	0.79	0.85	4.74	2.7	0.003	0.55	0.0	0.04	15.68	0.00	1.771	6.68	2.83	7.1	92.9	0.0	-0.81	0.33	0.81	0.87	4.05	24224	3270	12	0	18	0	0	logfile
✔	6XEY	22156	2021-06-03	2020-06-14	3.25	3.61	2.92	2.1	0.005	0.81	1.0	0.05	12.58	0.01	2.265	3.59	0.26	5.1	94.8	0.1	-1.87	0.88	0.83	3.34	2.1	0.002	0.56	0.0	0.04	13.57	0.00	2.114	6.73	0.22	4.7	95.2	0.0	-0.40	0.33	0.89	0.85	2.40	28482	3788	24	0	63	0	0	logfile
✔	7K78	22696	2021-06-02	2020-09-22	3.1	3.20	—	3.2	0.004	0.69	0.0	0.04	27.09	0.01	2.149	8.36	0.20	2.7	97.3	0.0	0.24	0.73	0.84	2.54	3.2	0.004	0.59	0.0	0.03	26.72	0.00	2.187	7.71	0.30	3.0	97.0	0.0	1.80	0.33	0.73	0.86	2.27	14125	1198	12	232	0	0	0	logfile
✔	6M52	30083	2021-06-04	2020-03-09	2.6	2.82	—	2.8	0.009	0.97	0.0	0.06	15.32	0.00	2.390	0.63	0.00	4.7	95.3	0.0	-0.23	0.69	0.86	3.58	2.8	0.005	0.66	0.0	0.04	17.59	0.00	2.342	0.77	0.90	4.2	95.8	0.0	3.40	0.33	0.79	0.91	2.51	33382	4104	38	0	6	8	0	logfile
✔	6WQQ	21873	2021-06-02	2020-04-29	3.1	2.53	3.04	3.0	0.002	0.45	2.0	0.03	14.51	0.00	2.203	3.53	0.36	3.9	96.1	0.0	-4.07	0.73	0.80	2.74	3.0	0.006	0.80	0.0	0.05	16.71	0.01	1.934	5.90	0.54	7.4	92.6	0.0	-3.01	0.33	0.75	0.83	2.74	81134	2671	28	2809	1	0	0	logfile
✔	6YS5	10892	2021-06-02	2020-04-21	3.0	3.05	2.83	3.0	0.007	0.72	0.0	0.05	15.84	0.01	1.880	5.25	7.15	7.4	92.6	0.0	-3.10	0.80	0.87	2.82	3.0	0.006	0.68	0.0	0.04	16.10	0.01	1.882	5.32	4.38	7.2	92.8	0.0	-0.29	0.33	0.82	0.90	3.00	16864	852	13	477	24	0	0	logfile
✔	6YY0	11001	2021-06-05	2020-05-04	3.23	3.34	3.07	3.3	0.006	0.69	0.0	0.04	15.27	0.00	1.847	8.05	0.00	8.4	91.6	0.0	-0.84	0.72	0.84	2.97	3.3	0.004	0.69	0.0	0.04	16.19	0.00	1.837	6.14	0.06	4.2	95.8	0.0	0.43	0.34	0.73	0.85	2.67	61162	3926	25	0	11	17	30826	logfile
✔	6K7J	9935	2021-06-02	2019-06-07	3.08	3.21	2.88	3.2	0.030	1.51	0.0	0.18	15.12	0.01	2.159	5.73	0.17	8.6	91.2	0.2	-3.98	0.57	0.82	3.51	3.2	0.005	1.07	0.0	0.06	16.23	0.01	2.147	11.23	0.09	7.8	92.0	0.2	-3.06	0.34	0.68	0.88	3.41	10602	1311	4	0	8	0	0	logfile
✔	7D6X	30595	2021-06-01	2020-10-02	2.88	3.17	—	3.1	0.011	1.37	4.0	0.11	14.85	0.01	1.988	9.54	0.22	11.7	88.1	0.3	-2.90	0.74	0.88	3.52	3.1	0.004	0.67	0.0	0.04	16.25	0.01	2.244	7.15	2.00	9.9	90.1	0.0	-1.07	0.34	0.72	0.88	3.21	8711	1097	6	0	6	0	0	logfile
✔	6XM5	22256	2021-06-03	2020-06-29	3.1	3.30	3.13	3.2	0.008	0.82	0.0	0.06	14.56	0.01	2.275	3.77	0.51	6.8	93.2	0.0	-4.06	0.82	0.88	3.22	3.2	0.005	0.62	0.0	0.05	15.28	0.01	2.190	7.41	0.40	5.8	94.2	0.0	-1.35	0.34	0.83	0.89	2.47	25393	3149	22	0	58	0	0	logfile
✔	6TPQ	10543	2021-06-03	2019-12-13	3.07	4.01	—	3.3	0.008	0.68	0.0	0.04	16.20	0.00	1.176	12.48	0.04	9.5	90.5	0.0	-4.14	0.92	0.90	2.30	3.3	0.006	0.67	0.0	0.04	16.42	0.01	1.206	12.34	0.72	8.0	92.0	0.0	-1.79	0.34	0.92	0.91	1.85	91728	3346	39	3047	222	0	0	logfile
✔	7KiN	22888	2021-06-03	2020-10-23	2.74	3.34	—	3.3	0.016	1.06	0.0	0.07	18.26	0.01	2.047	3.35	7.82	5.9	94.1	0.0	-2.52	0.69	0.80	3.04	3.3	0.003	0.58	0.0	0.04	18.38	0.00	2.072	6.08	4.10	4.6	95.4	0.0	0.27	0.34	0.70	0.81	2.34	29379	3509	11	103	3	0	0	logfile
✔	6UZ8	20953	2021-06-03	2019-11-14	2.84	3.21	—	3.1	0.052	1.87	4.0	0.34	14.13	0.02	2.298	2.20	0.17	4.3	95.7	0.0	-3.69	0.72	0.84	3.29	3.1	0.005	1.44	0.0	0.09	16.55	0.01	1.752	12.84	0.26	3.6	96.4	0.0	-1.91	0.35	0.77	0.88	3.08	23320	2936	8	0	16	0	0	logfile
✔	6LQM	0948	2021-06-02	2020-01-14	3.09	3.18	—	3.1	0.016	1.31	3.0	0.07	17.26	0.03	1.296	4.28	1.60	7.4	92.4	0.2	-3.93	0.83	0.85	3.33	3.1	0.009	0.92	1.0	0.05	17.35	0.01	1.199	8.78	0.73	7.5	92.4	0.1	-1.61	0.35	0.85	0.88	3.06	139464	7108	53	3808	251	0	0	logfile
✔	7AA3	11689	2021-06-01	2020-09-03	3.56	3.97	3.53	3.9	0.004	0.66	0.0	0.04	14.11	0.00	2.046	9.30	0.00	10.1	89.9	0.0	-3.38	0.75	0.80	3.29	3.9	0.005	0.70	0.0	0.04	15.80	0.01	2.123	7.90	0.00	8.3	91.7	0.0	-1.88	0.35	0.74	0.79	1.87	8389	1094	2	0	0	0	0	logfile

• ← previous
• Page 2 of 253
• next →