Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6Y97	10733	2022-07-03	2020-03-06	4.33	4.65	—	4.5	0.002	0.58	0.0	0.04	14.61	0.00	2.147	7.28	0.00	5.2	94.8	0.0	1.11	0.69	0.62	—	4.5	0.004	0.76	0.0	0.04	13.35	0.00	2.096	18.78	0.00	6.8	93.2	0.0	0.33	1.52	0.72	0.72	—	4366	564	4	0	0	0	0	logfile
✔	7JPP	22418	2022-07-04	2020-08-09	3.7	3.83	—	3.8	0.007	1.18	0.0	0.06	15.25	0.01	2.061	3.35	0.00	1.6	98.4	0.0	-1.90	0.72	0.78	2.10	3.8	0.008	0.86	0.0	0.04	16.95	0.01	1.948	7.38	0.24	2.8	97.2	0.0	0.65	2.23	0.74	0.80	1.43	14872	1816	7	0	4	0	0	logfile
✔	6So5	10266	2022-07-03	2019-08-29	4.2	4.36	—	4.2	0.005	0.82	0.0	0.04	14.99	0.01	1.973	23.72	0.00	10.2	89.8	0.0	-4.60	0.68	0.79	—	4.2	0.004	0.83	0.0	0.05	14.25	0.01	2.180	16.81	0.00	5.8	94.2	0.0	-0.33	1.26	0.66	0.78	—	8737	1097	7	0	1	0	0	logfile
✔	6SGR	10182	2022-07-03	2019-08-05	3.17	3.28	3.08	3.2	0.004	0.54	0.0	0.04	13.56	0.00	2.201	5.19	0.00	3.2	96.8	0.0	-3.06	0.69	0.83	3.52	3.2	0.003	0.56	0.0	0.04	15.44	0.00	1.978	5.23	0.10	2.7	97.3	0.0	1.18	0.76	0.70	0.86	2.89	54142	3528	8	0	0	0	27330	logfile
✘	6W98	21580	2022-07-03	2020-03-22	2.9	3.47	2.92	3.3	0.010	0.86	0.0	0.05	12.82	0.01	1.174	2.62	0.00	4.4	95.6	0.1	-4.30	0.67	0.84	3.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10317	1389	3	0	4	1	0	logfile
✔	6Vo0	21256	2022-07-04	2020-01-29	3.52	3.99	—	3.9	0.021	1.78	0.0	0.10	10.05	0.01	2.380	1.90	0.00	3.6	95.6	0.8	0.22	0.77	0.83	2.86	3.9	0.004	0.76	0.0	0.05	14.59	0.00	2.151	11.36	0.29	6.1	93.2	0.7	-0.68	1.96	0.75	0.81	1.92	19494	2364	36	0	72	0	0	logfile
✔	6RJU	4906	2022-07-02	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	10.0	0.003	0.66	0.0	0.03	16.23	0.00	2.422	6.03	0.00	3.9	96.1	0.0	-0.32	1.40	0.27	0.03	-0.67	1992	131	1	0	0	0	997	logfile
✔	6WW2	21927	2022-07-03	2020-05-07	3.7	4.24	—	4.0	0.010	1.08	0.0	0.06	14.27	0.01	2.240	5.79	0.00	10.3	89.6	0.1	-2.34	0.68	0.81	1.89	4.0	0.003	0.71	0.0	0.04	15.48	0.00	2.111	10.66	0.12	6.7	93.2	0.1	-0.81	0.45	0.68	0.80	1.42	7594	982	4	0	0	0	0	logfile
✔	7BZF	30252	2022-07-03	2020-04-27	3.26	3.61	3.32	3.6	0.003	0.61	0.0	0.04	13.90	0.00	2.199	11.67	0.00	8.5	91.5	0.0	-4.42	0.73	0.77	2.58	3.6	0.006	0.77	0.0	0.04	15.99	0.00	2.170	12.90	0.19	7.3	92.7	0.0	-1.48	0.47	0.69	0.78	2.03	9932	1200	7	19	2	0	0	logfile
✔	6VFH	21172	2022-07-07	2020-01-05	3.86	3.96	3.81	3.9	0.019	1.39	0.0	0.08	9.31	0.01	2.497	0.82	0.00	0.8	99.2	0.0	2.06	0.75	0.80	1.89	3.9	0.003	0.64	0.0	0.04	16.73	0.00	2.133	10.22	0.53	2.1	97.9	0.0	3.55	2.49	0.76	0.80	1.10	36984	4752	24	0	0	0	0	logfile
✘	6VM0	21234	2022-07-04	2020-01-27	3.14	4.05	3.31	3.8	0.011	1.21	0.0	0.07	16.70	0.01	1.177	5.64	0.00	4.2	95.8	0.0	-2.33	0.77	0.85	2.65	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15355	1815	15	0	20	0	0	logfile
✔	6WX6	21951	2022-07-04	2020-05-09	2.0	2.11	2.08	2.1	0.006	0.69	0.0	0.04	14.94	0.00	2.277	0.00	0.00	1.2	98.8	0.0	1.60	0.77	0.88	7.70	2.1	0.004	0.55	0.0	0.04	16.24	0.00	2.003	3.40	0.69	1.2	98.8	0.0	4.62	0.53	0.78	0.90	7.39	68332	4128	56	0	8	2420	32664	logfile
✔	7JPR	22420	2022-07-04	2020-08-09	4.0	4.90	—	3.3	0.006	1.20	0.0	0.06	15.00	0.01	2.048	5.61	0.00	3.6	96.4	0.0	-2.74	0.82	0.68	—	3.6	0.003	0.72	0.0	0.04	16.55	0.00	1.924	17.21	0.21	3.2	96.8	0.0	0.50	0.91	0.86	0.76	—	16737	2045	8	0	6	0	0	logfile
✔	6VTT	21383	2022-07-04	2020-02-13	3.7	4.22	3.79	4.0	0.004	0.64	3.0	0.05	10.83	0.01	2.214	6.27	0.00	4.6	95.4	0.0	-4.61	0.82	0.82	2.05	4.0	0.005	0.65	0.0	0.05	13.53	0.00	2.182	10.19	0.35	7.8	92.2	0.0	-2.19	0.49	0.83	0.83	1.83	16607	1928	36	0	103	0	0	logfile
✘	6VM2	21236	2022-07-04	2020-01-27	3.34	4.05	3.31	3.8	0.011	1.21	0.0	0.07	16.70	0.01	1.177	5.64	0.00	4.2	95.8	0.0	-2.33	0.77	0.85	2.65	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15355	1815	15	0	20	0	0	logfile
✘	6VFi	21173	2022-07-03	2020-01-05	4.54	4.63	4.96	4.5	0.018	1.47	0.0	0.09	10.93	0.01	2.449	0.53	0.00	1.3	98.7	0.0	1.21	0.80	0.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	58488	7560	48	0	0	0	0	logfile
✔	7JPS	22421	2022-07-04	2020-08-09	4.4	5.22	—	3.8	0.006	1.19	1.0	0.06	16.52	0.01	2.102	4.40	0.00	3.1	96.9	0.0	-2.45	0.67	0.46	—	3.8	0.004	0.72	0.0	0.04	16.33	0.00	1.876	20.20	0.00	5.4	94.6	0.0	-0.52	1.56	0.84	0.72	—	16352	1932	11	26	7	0	0	logfile
✔	6Y9A	10734	2022-07-03	2020-03-06	4.2	5.61	—	5.7	0.004	0.81	0.0	0.05	13.59	0.01	2.211	10.90	0.00	5.9	94.1	0.0	-1.17	0.53	0.44	—	5.6	0.003	0.72	0.0	0.04	13.34	0.01	2.133	17.61	0.00	5.6	94.4	0.0	0.15	1.38	0.53	0.62	—	5948	776	4	0	0	0	0	logfile
✘	6KPA	0742	2022-07-03	2019-08-15	2.75	3.85	—	3.3	0.015	0.92	0.0	0.06	13.60	0.00	1.260	6.66	0.00	6.7	93.3	0.0	-4.52	0.87	0.88	3.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	62845	3936	24	0	48	0	31225	logfile
✔	6KPi	0747	2022-07-03	2019-08-15	2.43	3.50	—	3.0	0.008	0.67	0.0	0.06	11.99	0.00	1.974	5.19	0.00	7.1	92.9	0.0	-4.39	0.85	0.88	4.58	3.0	0.005	0.78	2.0	0.13	14.39	0.00	1.984	5.77	0.62	3.5	96.5	0.0	1.23	0.72	0.85	0.90	4.27	62209	3936	24	0	24	0	31225	logfile

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