Table showing results for June 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6BUZ	7293	2021-06-02	2017-12-11	3.92	4.51	—	4.2	0.008	0.88	0.0	0.05	27.46	0.01	2.308	8.08	0.00	5.6	94.4	0.0	-5.03	0.85	0.86	3.06	4.2	0.004	0.77	0.0	0.04	28.62	0.00	2.086	18.59	0.82	4.7	95.3	0.0	-0.22	1.03	0.84	0.85	1.35	12509	878	11	290	0	0	0	logfile
✔	6VGN	21198	2021-06-03	2020-01-08	3.1	3.36	—	3.5	0.021	1.90	7.0	0.14	12.40	0.01	2.401	2.84	0.00	3.2	96.2	0.5	0.02	0.62	0.73	3.70	3.5	0.003	0.63	0.0	0.04	14.90	0.00	2.157	9.15	0.38	3.8	96.2	0.0	1.11	1.26	0.69	0.82	3.34	20447	2653	21	0	14	0	0	logfile
✔	6VU8	21388	2021-06-01	2020-02-14	4.14	4.31	4.17	4.2	0.006	1.03	0.0	0.05	16.37	0.01	2.262	7.78	0.00	9.9	90.1	0.0	-4.91	0.72	0.78	—	4.2	0.003	0.76	0.0	0.04	14.75	0.00	2.222	12.38	0.00	7.8	92.2	0.0	-1.59	1.33	0.72	0.76	—	5249	669	2	0	0	0	0	logfile
✔	6RF8	4862	2021-06-02	2019-04-12	3.8	3.98	—	3.9	0.006	0.84	0.0	0.05	11.84	0.01	2.084	3.29	0.00	4.8	95.2	0.0	-4.91	0.86	0.86	2.95	3.9	0.004	0.64	0.0	0.04	15.15	0.00	1.892	9.29	0.19	4.6	95.4	0.0	-1.02	1.58	0.85	0.87	2.39	14407	1821	9	2	4	0	0	logfile
✔	6P6F	20261	2021-06-06	2019-06-03	4.5	4.71	4.50	4.6	0.017	1.59	0.0	0.09	9.24	0.01	2.442	0.07	0.00	0.3	99.7	0.0	0.73	0.71	0.82	—	4.6	0.005	0.89	0.0	0.05	13.97	0.01	2.266	20.39	0.00	1.7	98.3	0.0	-0.40	1.34	0.73	0.80	—	159840	21060	120	0	0	0	0	logfile
✔	6UXA	20931	2021-06-02	2019-11-07	4.5	5.05	—	6.0	0.005	0.77	0.0	0.06	4.56	0.00	2.628	0.00	0.00	3.8	96.2	0.0	-2.56	0.71	0.63	—	6.0	0.002	0.63	0.0	0.05	3.30	0.00	2.242	3.25	0.00	2.5	97.5	0.0	2.65	4.60	0.72	0.66	—	10344	2104	8	0	0	0	0	logfile
✔	6CFZ	7469	2021-06-01	2018-02-19	4.5	4.66	5.81	4.7	0.010	1.19	0.0	0.05	9.79	0.01	0.321	10.91	0.00	6.6	92.9	0.4	-0.45	0.25	0.19	—	4.5	0.007	0.81	0.0	0.04	11.85	0.01	1.616	25.76	0.00	10.5	89.4	0.2	2.76	1.89	0.33	0.41	—	204102	12937	170	0	0	0	102272	logfile
✔	5YWP	6855	2021-06-02	2017-11-29	4.6	5.26	—	20.0	0.005	0.98	0.0	0.05	9.48	0.01	2.023	47.18	0.00	7.3	92.1	0.6	-3.63	0.12	0.02	—	48.0	0.003	0.72	0.0	0.04	10.94	0.00	2.115	12.74	0.00	4.0	95.6	0.4	-0.53	1.28	0.13	0.03	—	19561	2588	10	0	0	0	0	logfile
✔	6REV	4858	2021-06-02	2019-04-12	3.8	3.81	—	3.8	0.006	0.88	0.0	0.05	11.71	0.01	2.117	2.65	0.00	5.6	94.4	0.0	-5.13	0.82	0.85	3.29	3.8	0.004	0.66	0.0	0.05	15.17	0.00	1.945	8.69	0.32	5.2	94.8	0.0	-1.69	2.12	0.82	0.87	2.58	14407	1821	9	2	4	0	0	logfile
✔	6RF2	4861	2021-06-02	2019-04-12	4.2	4.24	—	4.4	0.005	0.77	0.0	0.05	11.14	0.01	2.105	3.69	0.00	4.6	95.4	0.0	-4.97	0.83	0.81	—	4.3	0.002	0.65	0.0	0.04	13.93	0.00	2.047	9.05	0.00	3.6	96.4	0.0	-0.95	1.66	0.84	0.82	—	14328	1809	9	2	6	0	0	logfile
✔	6VPS	21316	2021-06-01	2020-02-04	2.6	2.62	2.52	2.7	0.011	1.14	10.0	0.13	20.44	0.01	2.501	19.04	0.00	6.9	93.1	0.0	-3.61	0.49	0.89	6.11	2.7	0.003	0.48	0.0	0.03	19.95	0.00	2.357	3.30	1.31	6.9	93.1	0.0	-3.69	1.18	0.46	0.86	6.57	2736	279	9	0	0	0	0	logfile
✔	6oDJ	20021	2021-06-03	2019-03-26	3.5	3.75	—	3.7	0.009	1.50	0.0	0.07	11.32	0.01	2.438	2.03	0.00	0.0	0.0	0.0	—	0.81	0.81	—	3.6	0.012	1.74	0.0	0.06	7.96	0.00	2.119	11.87	0.00	0.0	0.0	0.0	—	0.66	0.82	0.83	—	25415	0	17	0	5083	0	0	logfile
✔	6oEH	20020	2021-06-04	2019-03-27	3.8	3.93	—	3.7	0.010	1.38	0.0	0.07	11.62	0.01	2.381	2.81	0.00	0.0	0.0	0.0	—	0.38	0.77	—	3.6	0.007	1.05	0.0	0.04	5.10	0.00	2.207	12.83	0.00	0.0	0.0	0.0	—	0.56	0.41	0.81	—	32900	0	14	0	6580	0	0	logfile
✔	5W3F	8755	2021-06-02	2017-06-07	3.7	3.85	—	3.8	0.012	1.78	1.0	0.07	11.21	0.01	1.591	5.74	0.00	9.3	88.8	2.0	-3.17	0.57	0.77	2.45	3.8	0.003	0.78	0.0	0.04	14.70	0.00	1.932	11.33	0.67	5.0	94.4	0.6	-0.98	1.35	0.57	0.79	1.94	13367	867	4	1	2	0	6525	logfile
✔	6SD1	10145	2021-06-04	2019-07-26	2.6	2.74	2.55	2.7	0.003	0.53	0.0	0.04	12.42	0.00	2.149	8.44	0.00	4.3	95.7	0.0	-2.90	0.74	0.84	4.92	2.7	0.005	0.59	0.0	0.04	16.70	0.00	2.155	8.76	1.42	0.9	99.1	0.0	1.99	0.66	0.77	0.86	4.48	39369	4983	33	0	0	0	0	logfile
✘	5W3J	8757	2021-06-01	2017-06-07	4.0	4.33	—	4.1	0.045	1.54	0.0	0.14	8.29	0.00	2.262	6.50	0.00	8.7	90.2	1.2	-5.17	0.60	0.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6913	867	4	1	3	0	0	logfile
✔	6oEF	20020	2021-06-05	2019-03-27	3.8	3.98	—	3.8	0.007	1.67	0.0	0.07	11.76	0.01	2.376	3.96	0.00	0.0	0.0	0.0	—	0.47	0.78	—	3.8	0.006	1.18	0.0	0.05	5.87	0.00	2.195	7.67	0.00	0.0	0.0	0.0	—	0.60	0.49	0.80	—	51240	0	14	0	10248	0	0	logfile
✔	6VGQ	21199	2021-06-02	2020-01-08	3.5	3.74	—	3.8	0.005	0.88	0.0	0.04	9.86	0.01	1.335	1.32	0.00	1.7	98.3	0.0	0.69	0.63	0.76	2.44	3.8	0.004	0.59	0.0	0.04	15.39	0.00	2.116	8.05	0.30	1.9	97.8	0.3	1.48	1.60	0.69	0.83	2.69	19348	2527	21	0	7	0	0	logfile
✔	6VK3	21224	2021-06-01	2020-01-18	3.7	3.81	—	3.8	0.006	0.93	0.0	0.06	14.84	0.01	2.013	12.39	0.00	5.1	94.8	0.1	-2.61	0.68	0.80	1.94	3.8	0.003	0.62	0.0	0.04	16.78	0.00	2.190	8.48	0.36	5.4	94.6	0.0	0.28	1.66	0.67	0.79	1.62	7784	954	2	0	7	0	0	logfile
✔	6M67	30115	2021-06-02	2020-03-13	3.6	3.14	—	4.0	0.006	1.14	0.0	0.06	14.95	0.01	2.247	6.79	0.00	10.3	89.7	0.0	-4.86	0.54	0.64	1.39	3.9	0.003	0.83	0.0	0.05	17.09	0.01	2.033	15.75	0.71	9.8	90.2	0.0	-1.09	0.89	0.54	0.63	1.45	14938	1855	7	0	0	0	0	logfile

• ← previous
• Page 2 of 253
• next →