Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6BPQ	7127	2022-05-15	2017-11-25	4.1	4.26	4.18	4.2	0.007	0.92	0.0	0.05	9.83	0.01	2.338	4.30	0.00	3.9	96.1	0.0	-3.30	0.68	0.78	—	4.2	0.006	0.77	0.0	0.04	11.98	0.00	2.283	8.21	0.00	4.6	95.4	0.0	1.50	0.64	0.68	0.77	—	22404	3072	4	0	268	0	0	logfile
✔	6QMB	4594	2022-05-13	2019-02-01	3.6	3.74	3.74	3.7	0.008	0.87	0.0	0.05	14.68	0.01	2.284	3.90	0.00	3.6	96.4	0.0	-3.44	0.75	0.84	2.36	3.7	0.015	1.52	1.0	0.04	16.38	0.00	1.989	14.01	0.09	4.0	96.0	0.0	0.75	1.15	0.75	0.84	1.86	10698	1322	4	0	4	0	0	logfile
✔	3J9J	5778	2022-05-14	2015-02-02	3.275	3.52	3.19	3.6	0.015	1.08	0.0	0.09	9.35	0.01	2.266	2.70	0.00	3.3	94.5	2.2	-0.65	0.53	0.57	2.57	3.5	0.003	0.65	0.0	0.04	15.80	0.00	1.905	14.19	0.17	6.7	92.7	0.6	2.30	3.87	0.59	0.76	1.97	21068	1260	4	0	0	0	10624	logfile
✔	6FLT	4276	2022-05-12	2018-01-28	3.42	3.32	—	3.5	0.014	1.15	0.0	0.06	8.31	0.00	2.330	9.03	0.00	14.3	85.7	0.0	-5.36	0.44	0.74	2.91	3.5	0.005	0.67	0.0	0.05	10.57	0.00	2.300	12.13	0.00	20.7	79.3	0.0	-5.03	2.04	0.42	0.79	4.07	8060	580	10	0	0	0	4100	logfile
✔	5U6P	8512	2022-05-14	2016-12-08	3.51	3.56	—	3.5	0.007	1.40	0.0	0.07	12.41	0.01	2.399	2.62	0.00	3.2	96.8	0.0	1.31	0.45	0.53	2.72	3.5	0.003	0.59	0.0	0.04	16.20	0.00	2.184	8.02	0.36	2.4	97.6	0.0	2.45	0.65	0.66	0.83	2.48	15640	2016	12	0	80	0	0	logfile
✔	6H6B	0148	2022-05-12	2018-07-26	3.4	3.13	—	3.5	0.008	1.10	0.0	0.20	8.13	0.00	2.530	5.82	0.00	14.3	85.7	0.0	-4.80	0.44	0.74	5.60	3.2	0.005	0.91	0.0	0.18	11.69	0.00	2.137	6.56	0.50	19.6	80.4	0.0	-4.04	1.83	0.42	0.78	3.27	8060	580	10	0	0	0	4100	logfile
✔	6T63	10383	2022-05-16	2019-10-17	3.8	3.80	—	3.8	0.005	0.85	0.0	0.05	15.28	0.01	0.439	4.46	0.00	7.1	92.6	0.3	-3.77	0.52	0.79	2.11	3.7	0.005	0.82	0.0	0.04	18.21	0.01	2.085	12.05	0.62	6.8	93.1	0.2	1.22	1.70	0.53	0.81	1.62	30978	3906	18	0	0	0	0	logfile
✔	6TJX	10514	2022-05-12	2019-11-27	3.0	3.21	2.52	3.4	0.011	1.10	0.0	0.07	9.93	0.01	2.312	4.11	0.00	4.8	95.2	0.0	-3.93	0.43	0.79	4.74	3.3	0.005	0.78	0.0	0.06	14.56	0.00	2.398	7.11	3.90	6.7	93.3	0.0	-3.36	2.48	0.39	0.81	3.89	4878	642	6	0	0	0	0	logfile
✔	6QM9	4592	2022-05-13	2019-02-01	3.6	3.72	3.65	3.7	0.005	0.89	0.0	0.05	15.52	0.01	2.275	3.83	0.00	3.2	96.8	0.0	-6.09	0.74	0.84	2.64	3.7	0.003	0.67	0.0	0.04	16.69	0.00	2.163	9.00	0.26	3.8	96.2	0.0	0.55	0.58	0.74	0.84	1.99	10878	1346	4	0	4	0	0	logfile
✔	6QM4	4587	2022-05-13	2019-02-01	3.8	3.88	3.83	3.8	0.007	0.99	0.0	0.05	15.63	0.01	2.242	3.99	0.00	4.8	95.2	0.0	-5.94	0.61	0.79	1.31	3.9	0.007	0.80	0.0	0.04	17.33	0.01	2.122	9.70	0.44	4.0	96.0	0.0	0.63	0.71	0.63	0.79	1.37	10580	1308	2	0	0	0	0	logfile
✔	5MSH	3565	2022-05-12	2017-01-04	4.25	3.96	—	20.0	0.014	1.56	0.0	0.07	9.56	0.01	2.323	3.19	0.00	6.1	92.5	1.5	-0.93	0.01	0.02	—	3.7	0.009	1.40	0.0	0.05	13.33	0.01	2.113	15.84	0.00	6.4	93.4	0.2	-0.82	2.65	0.04	0.13	—	4287	551	2	0	0	0	0	logfile
✔	6PKV	20367	2022-05-15	2019-06-30	4.3	4.49	—	4.3	0.005	0.86	0.0	0.05	8.98	0.01	2.311	3.59	0.00	4.7	95.3	0.0	-3.45	0.67	0.78	—	4.3	0.002	0.56	0.0	0.04	9.94	0.00	2.255	6.39	0.00	4.1	95.9	0.0	1.40	1.92	0.67	0.77	—	28284	4260	4	0	88	0	0	logfile
✔	6U1N	20612	2022-05-12	2019-08-16	4.0	4.36	—	4.0	0.009	0.91	0.0	0.04	12.06	0.00	2.198	18.08	0.00	7.8	92.2	0.0	-4.67	0.84	0.82	—	4.0	0.005	0.72	0.0	0.04	13.42	0.00	2.154	14.76	0.87	5.3	94.7	0.0	-0.65	0.51	0.84	0.82	—	5863	864	5	0	1	0	0	logfile
✔	6oSA	20181	2022-05-13	2019-05-01	3.0	3.37	—	3.3	0.008	1.08	0.0	0.06	11.09	0.01	2.210	4.72	0.00	3.5	96.5	0.0	-2.75	0.62	0.78	3.28	3.4	0.004	0.73	0.0	0.04	16.07	0.00	2.149	11.34	3.63	3.8	96.2	0.0	0.58	1.67	0.64	0.81	2.35	7338	937	5	0	0	0	0	logfile
✔	6QM6	4589	2022-05-13	2019-02-01	3.7	3.81	3.67	3.8	0.004	0.84	0.0	0.05	14.34	0.01	2.338	4.44	0.00	3.3	96.7	0.0	-6.02	0.69	0.85	2.46	3.8	0.008	0.98	0.0	0.04	16.23	0.01	1.918	9.34	0.35	3.6	96.4	0.0	0.95	0.60	0.69	0.85	1.83	10852	1344	2	0	0	0	0	logfile
✔	6oo2	20142	2022-05-14	2019-04-22	4.4	4.52	—	3.5	0.007	1.14	1.0	0.07	13.96	0.01	2.037	7.03	0.00	7.1	92.3	0.6	-3.55	0.75	0.61	—	2.5	0.004	0.74	0.0	0.04	12.97	0.00	0.867	17.94	0.00	5.8	94.2	0.0	1.38	1.01	0.86	0.80	—	16691	2436	24	0	19	0	0	logfile
✔	6oCE	20017	2022-05-13	2019-03-23	4.9	4.11	—	4.0	0.006	0.73	0.0	0.04	8.07	0.01	1.868	8.65	0.00	9.9	90.1	0.0	-4.37	0.45	0.60	—	4.0	0.003	0.74	0.0	0.04	12.55	0.01	2.180	10.99	0.00	12.6	87.4	0.0	-2.56	1.12	0.46	0.62	—	11228	1378	2	0	0	0	0	logfile
✔	6C9A	7435	2022-05-13	2018-01-25	3.2	3.34	—	3.3	0.009	1.05	0.0	0.33	11.15	0.01	2.331	2.82	0.00	5.0	95.0	0.0	-4.37	0.59	0.82	3.10	3.3	0.003	0.62	0.0	0.04	15.25	0.00	2.129	5.76	0.08	4.8	95.2	0.0	1.18	1.34	0.63	0.86	2.77	12182	1446	4	0	8	0	0	logfile
✔	3JD0	6631	2022-05-15	2016-03-28	3.47	3.93	—	3.8	0.012	0.82	0.0	0.05	10.31	0.00	1.989	15.63	0.00	13.3	85.9	0.8	-5.89	0.85	0.82	3.48	3.8	0.003	0.69	0.0	0.04	14.32	0.00	2.131	13.81	0.12	4.7	95.2	0.1	0.79	2.53	0.85	0.86	2.00	23478	2976	12	0	6	0	0	logfile
✘	6oo4	20145	2022-05-14	2019-04-22	3.3	3.45	3.23	3.5	0.013	1.10	0.0	0.06	9.30	0.01	1.858	3.19	0.00	3.4	96.6	0.0	-2.86	0.47	0.64	4.17	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18452	2440	8	0	4	0	0	logfile

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