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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6BPQ | 7127 | 2022-05-15 | 2017-11-25 | 4.1 | 4.26 | 4.18 | 4.2 | 0.007 | 0.92 | 0.0 | 0.05 | 9.83 | 0.01 | 2.338 | 4.30 | 0.00 | 3.9 | 96.1 | 0.0 | -3.30 | 0.68 | 0.78 | — | 4.2 | 0.006 | 0.77 | 0.0 | 0.04 | 11.98 | 0.00 | 2.283 | 8.21 | 0.00 | 4.6 | 95.4 | 0.0 | 1.50 | 0.64 | 0.68 | 0.77 | — | 22404 | 3072 | 4 | 0 | 268 | 0 | 0 | logfile |
✔ | 6QMB | 4594 | 2022-05-13 | 2019-02-01 | 3.6 | 3.74 | 3.74 | 3.7 | 0.008 | 0.87 | 0.0 | 0.05 | 14.68 | 0.01 | 2.284 | 3.90 | 0.00 | 3.6 | 96.4 | 0.0 | -3.44 | 0.75 | 0.84 | 2.36 | 3.7 | 0.015 | 1.52 | 1.0 | 0.04 | 16.38 | 0.00 | 1.989 | 14.01 | 0.09 | 4.0 | 96.0 | 0.0 | 0.75 | 1.15 | 0.75 | 0.84 | 1.86 | 10698 | 1322 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 3J9J | 5778 | 2022-05-14 | 2015-02-02 | 3.275 | 3.52 | 3.19 | 3.6 | 0.015 | 1.08 | 0.0 | 0.09 | 9.35 | 0.01 | 2.266 | 2.70 | 0.00 | 3.3 | 94.5 | 2.2 | -0.65 | 0.53 | 0.57 | 2.57 | 3.5 | 0.003 | 0.65 | 0.0 | 0.04 | 15.80 | 0.00 | 1.905 | 14.19 | 0.17 | 6.7 | 92.7 | 0.6 | 2.30 | 3.87 | 0.59 | 0.76 | 1.97 | 21068 | 1260 | 4 | 0 | 0 | 0 | 10624 | logfile |
✔ | 6FLT | 4276 | 2022-05-12 | 2018-01-28 | 3.42 | 3.32 | — | 3.5 | 0.014 | 1.15 | 0.0 | 0.06 | 8.31 | 0.00 | 2.330 | 9.03 | 0.00 | 14.3 | 85.7 | 0.0 | -5.36 | 0.44 | 0.74 | 2.91 | 3.5 | 0.005 | 0.67 | 0.0 | 0.05 | 10.57 | 0.00 | 2.300 | 12.13 | 0.00 | 20.7 | 79.3 | 0.0 | -5.03 | 2.04 | 0.42 | 0.79 | 4.07 | 8060 | 580 | 10 | 0 | 0 | 0 | 4100 | logfile |
✔ | 5U6P | 8512 | 2022-05-14 | 2016-12-08 | 3.51 | 3.56 | — | 3.5 | 0.007 | 1.40 | 0.0 | 0.07 | 12.41 | 0.01 | 2.399 | 2.62 | 0.00 | 3.2 | 96.8 | 0.0 | 1.31 | 0.45 | 0.53 | 2.72 | 3.5 | 0.003 | 0.59 | 0.0 | 0.04 | 16.20 | 0.00 | 2.184 | 8.02 | 0.36 | 2.4 | 97.6 | 0.0 | 2.45 | 0.65 | 0.66 | 0.83 | 2.48 | 15640 | 2016 | 12 | 0 | 80 | 0 | 0 | logfile |
✔ | 6H6B | 0148 | 2022-05-12 | 2018-07-26 | 3.4 | 3.13 | — | 3.5 | 0.008 | 1.10 | 0.0 | 0.20 | 8.13 | 0.00 | 2.530 | 5.82 | 0.00 | 14.3 | 85.7 | 0.0 | -4.80 | 0.44 | 0.74 | 5.60 | 3.2 | 0.005 | 0.91 | 0.0 | 0.18 | 11.69 | 0.00 | 2.137 | 6.56 | 0.50 | 19.6 | 80.4 | 0.0 | -4.04 | 1.83 | 0.42 | 0.78 | 3.27 | 8060 | 580 | 10 | 0 | 0 | 0 | 4100 | logfile |
✔ | 6T63 | 10383 | 2022-05-16 | 2019-10-17 | 3.8 | 3.80 | — | 3.8 | 0.005 | 0.85 | 0.0 | 0.05 | 15.28 | 0.01 | 0.439 | 4.46 | 0.00 | 7.1 | 92.6 | 0.3 | -3.77 | 0.52 | 0.79 | 2.11 | 3.7 | 0.005 | 0.82 | 0.0 | 0.04 | 18.21 | 0.01 | 2.085 | 12.05 | 0.62 | 6.8 | 93.1 | 0.2 | 1.22 | 1.70 | 0.53 | 0.81 | 1.62 | 30978 | 3906 | 18 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TJX | 10514 | 2022-05-12 | 2019-11-27 | 3.0 | 3.21 | 2.52 | 3.4 | 0.011 | 1.10 | 0.0 | 0.07 | 9.93 | 0.01 | 2.312 | 4.11 | 0.00 | 4.8 | 95.2 | 0.0 | -3.93 | 0.43 | 0.79 | 4.74 | 3.3 | 0.005 | 0.78 | 0.0 | 0.06 | 14.56 | 0.00 | 2.398 | 7.11 | 3.90 | 6.7 | 93.3 | 0.0 | -3.36 | 2.48 | 0.39 | 0.81 | 3.89 | 4878 | 642 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6QM9 | 4592 | 2022-05-13 | 2019-02-01 | 3.6 | 3.72 | 3.65 | 3.7 | 0.005 | 0.89 | 0.0 | 0.05 | 15.52 | 0.01 | 2.275 | 3.83 | 0.00 | 3.2 | 96.8 | 0.0 | -6.09 | 0.74 | 0.84 | 2.64 | 3.7 | 0.003 | 0.67 | 0.0 | 0.04 | 16.69 | 0.00 | 2.163 | 9.00 | 0.26 | 3.8 | 96.2 | 0.0 | 0.55 | 0.58 | 0.74 | 0.84 | 1.99 | 10878 | 1346 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 6QM4 | 4587 | 2022-05-13 | 2019-02-01 | 3.8 | 3.88 | 3.83 | 3.8 | 0.007 | 0.99 | 0.0 | 0.05 | 15.63 | 0.01 | 2.242 | 3.99 | 0.00 | 4.8 | 95.2 | 0.0 | -5.94 | 0.61 | 0.79 | 1.31 | 3.9 | 0.007 | 0.80 | 0.0 | 0.04 | 17.33 | 0.01 | 2.122 | 9.70 | 0.44 | 4.0 | 96.0 | 0.0 | 0.63 | 0.71 | 0.63 | 0.79 | 1.37 | 10580 | 1308 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 5MSH | 3565 | 2022-05-12 | 2017-01-04 | 4.25 | 3.96 | — | 20.0 | 0.014 | 1.56 | 0.0 | 0.07 | 9.56 | 0.01 | 2.323 | 3.19 | 0.00 | 6.1 | 92.5 | 1.5 | -0.93 | 0.01 | 0.02 | — | 3.7 | 0.009 | 1.40 | 0.0 | 0.05 | 13.33 | 0.01 | 2.113 | 15.84 | 0.00 | 6.4 | 93.4 | 0.2 | -0.82 | 2.65 | 0.04 | 0.13 | — | 4287 | 551 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PKV | 20367 | 2022-05-15 | 2019-06-30 | 4.3 | 4.49 | — | 4.3 | 0.005 | 0.86 | 0.0 | 0.05 | 8.98 | 0.01 | 2.311 | 3.59 | 0.00 | 4.7 | 95.3 | 0.0 | -3.45 | 0.67 | 0.78 | — | 4.3 | 0.002 | 0.56 | 0.0 | 0.04 | 9.94 | 0.00 | 2.255 | 6.39 | 0.00 | 4.1 | 95.9 | 0.0 | 1.40 | 1.92 | 0.67 | 0.77 | — | 28284 | 4260 | 4 | 0 | 88 | 0 | 0 | logfile |
✔ | 6U1N | 20612 | 2022-05-12 | 2019-08-16 | 4.0 | 4.36 | — | 4.0 | 0.009 | 0.91 | 0.0 | 0.04 | 12.06 | 0.00 | 2.198 | 18.08 | 0.00 | 7.8 | 92.2 | 0.0 | -4.67 | 0.84 | 0.82 | — | 4.0 | 0.005 | 0.72 | 0.0 | 0.04 | 13.42 | 0.00 | 2.154 | 14.76 | 0.87 | 5.3 | 94.7 | 0.0 | -0.65 | 0.51 | 0.84 | 0.82 | — | 5863 | 864 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 6oSA | 20181 | 2022-05-13 | 2019-05-01 | 3.0 | 3.37 | — | 3.3 | 0.008 | 1.08 | 0.0 | 0.06 | 11.09 | 0.01 | 2.210 | 4.72 | 0.00 | 3.5 | 96.5 | 0.0 | -2.75 | 0.62 | 0.78 | 3.28 | 3.4 | 0.004 | 0.73 | 0.0 | 0.04 | 16.07 | 0.00 | 2.149 | 11.34 | 3.63 | 3.8 | 96.2 | 0.0 | 0.58 | 1.67 | 0.64 | 0.81 | 2.35 | 7338 | 937 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6QM6 | 4589 | 2022-05-13 | 2019-02-01 | 3.7 | 3.81 | 3.67 | 3.8 | 0.004 | 0.84 | 0.0 | 0.05 | 14.34 | 0.01 | 2.338 | 4.44 | 0.00 | 3.3 | 96.7 | 0.0 | -6.02 | 0.69 | 0.85 | 2.46 | 3.8 | 0.008 | 0.98 | 0.0 | 0.04 | 16.23 | 0.01 | 1.918 | 9.34 | 0.35 | 3.6 | 96.4 | 0.0 | 0.95 | 0.60 | 0.69 | 0.85 | 1.83 | 10852 | 1344 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oo2 | 20142 | 2022-05-14 | 2019-04-22 | 4.4 | 4.52 | — | 3.5 | 0.007 | 1.14 | 1.0 | 0.07 | 13.96 | 0.01 | 2.037 | 7.03 | 0.00 | 7.1 | 92.3 | 0.6 | -3.55 | 0.75 | 0.61 | — | 2.5 | 0.004 | 0.74 | 0.0 | 0.04 | 12.97 | 0.00 | 0.867 | 17.94 | 0.00 | 5.8 | 94.2 | 0.0 | 1.38 | 1.01 | 0.86 | 0.80 | — | 16691 | 2436 | 24 | 0 | 19 | 0 | 0 | logfile |
✔ | 6oCE | 20017 | 2022-05-13 | 2019-03-23 | 4.9 | 4.11 | — | 4.0 | 0.006 | 0.73 | 0.0 | 0.04 | 8.07 | 0.01 | 1.868 | 8.65 | 0.00 | 9.9 | 90.1 | 0.0 | -4.37 | 0.45 | 0.60 | — | 4.0 | 0.003 | 0.74 | 0.0 | 0.04 | 12.55 | 0.01 | 2.180 | 10.99 | 0.00 | 12.6 | 87.4 | 0.0 | -2.56 | 1.12 | 0.46 | 0.62 | — | 11228 | 1378 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6C9A | 7435 | 2022-05-13 | 2018-01-25 | 3.2 | 3.34 | — | 3.3 | 0.009 | 1.05 | 0.0 | 0.33 | 11.15 | 0.01 | 2.331 | 2.82 | 0.00 | 5.0 | 95.0 | 0.0 | -4.37 | 0.59 | 0.82 | 3.10 | 3.3 | 0.003 | 0.62 | 0.0 | 0.04 | 15.25 | 0.00 | 2.129 | 5.76 | 0.08 | 4.8 | 95.2 | 0.0 | 1.18 | 1.34 | 0.63 | 0.86 | 2.77 | 12182 | 1446 | 4 | 0 | 8 | 0 | 0 | logfile |
✔ | 3JD0 | 6631 | 2022-05-15 | 2016-03-28 | 3.47 | 3.93 | — | 3.8 | 0.012 | 0.82 | 0.0 | 0.05 | 10.31 | 0.00 | 1.989 | 15.63 | 0.00 | 13.3 | 85.9 | 0.8 | -5.89 | 0.85 | 0.82 | 3.48 | 3.8 | 0.003 | 0.69 | 0.0 | 0.04 | 14.32 | 0.00 | 2.131 | 13.81 | 0.12 | 4.7 | 95.2 | 0.1 | 0.79 | 2.53 | 0.85 | 0.86 | 2.00 | 23478 | 2976 | 12 | 0 | 6 | 0 | 0 | logfile |
✘ | 6oo4 | 20145 | 2022-05-14 | 2019-04-22 | 3.3 | 3.45 | 3.23 | 3.5 | 0.013 | 1.10 | 0.0 | 0.06 | 9.30 | 0.01 | 1.858 | 3.19 | 0.00 | 3.4 | 96.6 | 0.0 | -2.86 | 0.47 | 0.64 | 4.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18452 | 2440 | 8 | 0 | 4 | 0 | 0 | logfile |