Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XMR	33302	2023-02-17	2022-04-26	3.1	3.31	2.93	3.3	0.001	0.40	0.0	0.04	10.86	0.00	2.250	5.63	0.00	1.6	98.4	0.0	-3.39	0.52	0.64	1.08	3.3	0.003	0.65	0.0	0.04	14.81	0.00	2.142	12.96	0.29	4.1	95.9	0.0	0.09	0.66	0.59	0.74	1.37	6611	871	5	0	0	0	0	logfile
✔	7FiY	31606	2023-02-19	2021-08-01	3.4	3.64	—	3.6	0.004	0.82	0.0	0.06	8.14	0.01	2.275	3.69	0.00	2.6	97.4	0.0	-1.10	0.67	0.75	2.44	3.6	0.003	0.58	0.0	0.04	14.14	0.00	2.105	9.47	0.31	2.5	97.5	0.0	1.25	1.71	0.70	0.80	2.00	9367	1152	7	0	6	0	0	logfile
✔	7EW4	31347	2023-02-18	2021-05-24	3.2	3.38	—	3.4	0.003	0.51	0.0	0.04	13.43	0.00	2.237	7.77	0.00	2.0	98.0	0.0	1.05	0.67	0.74	2.41	3.4	0.002	0.52	0.0	0.04	15.13	0.00	2.101	8.96	0.62	2.8	97.2	0.0	0.62	0.39	0.70	0.81	2.46	8929	1145	6	0	3	0	0	logfile
✔	7T6P	25723	2023-02-23	2021-12-14	2.8	3.33	—	3.3	0.005	1.13	0.0	0.06	14.54	0.01	2.310	3.72	0.00	4.0	96.0	0.0	-3.37	0.59	0.76	2.86	3.3	0.003	0.66	0.0	0.04	17.05	0.00	2.172	10.89	1.67	4.4	95.6	0.0	0.50	0.50	0.54	0.74	2.44	19412	2424	4	0	0	0	0	logfile
✔	7TTH	26115	2023-02-20	2022-02-01	3.25	3.81	—	3.7	0.003	0.69	0.0	0.05	12.15	0.00	2.232	7.80	0.00	4.5	95.5	0.0	-0.01	0.55	0.71	1.99	3.7	0.003	0.64	0.0	0.04	14.39	0.00	2.131	6.49	0.08	3.8	96.2	0.0	0.60	0.54	0.65	0.79	1.78	12698	1750	8	0	10	0	0	logfile
✔	7VQQ	32092	2023-02-16	2021-10-20	2.9	2.61	—	3.1	0.009	0.85	0.0	0.05	11.51	0.01	2.233	2.50	0.00	12.4	87.6	0.0	-6.09	0.47	0.86	4.62	3.1	0.006	0.80	0.0	0.04	12.91	0.00	2.234	2.21	0.91	5.6	94.4	0.0	-4.97	0.28	0.48	0.87	4.95	1968	273	3	0	0	0	0	logfile
✘	7WF7	32461	2023-02-18	2021-12-26	3.4	3.19	—	3.2	0.004	0.83	0.0	0.05	13.56	0.00	2.288	2.88	0.00	4.4	95.6	0.0	-1.14	0.55	0.64	1.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8136	1034	6	0	1	0	0	logfile
✔	7UVT	26816	2023-02-20	2022-05-02	3.9	4.17	4.00	4.1	0.001	0.41	0.0	0.02	16.13	0.00	1.897	6.61	0.00	0.0	0.0	0.0	—	0.76	0.74	—	4.1	0.006	0.70	0.0	0.04	17.94	0.01	1.892	21.35	0.00	0.0	0.0	0.0	—	0.48	0.77	0.76	—	12409	0	1	386	0	0	4149	logfile
✔	7TJT	25931	2023-02-24	2022-01-17	3.2	3.46	3.29	3.4	0.003	0.63	0.0	0.05	12.67	0.00	1.991	3.26	0.00	1.2	98.8	0.0	0.60	0.75	0.85	3.19	3.4	0.003	0.54	0.0	0.04	14.62	0.00	2.005	6.04	0.04	1.7	98.3	0.0	1.23	2.65	0.75	0.86	2.61	23129	3099	11	0	7	0	0	logfile
✔	7SP7	25367	2023-02-18	2021-11-02	3.1	3.61	—	3.5	0.008	0.68	0.0	0.05	13.90	0.00	2.219	3.57	0.00	1.4	98.6	0.0	2.52	0.60	0.73	1.83	3.5	0.003	0.52	0.0	0.04	15.63	0.00	2.219	5.74	0.32	1.9	98.1	0.0	1.72	0.58	0.67	0.81	3.22	6052	739	4	1	4	0	0	logfile
✔	7T6Q	25724	2023-02-23	2021-12-14	3.4	3.68	—	3.7	0.006	1.29	2.0	0.06	15.20	0.01	2.282	4.88	0.00	3.9	96.1	0.0	-3.87	0.68	0.77	2.18	3.7	0.004	0.73	0.0	0.04	16.59	0.00	2.187	11.75	0.48	4.7	95.3	0.0	-0.46	1.18	0.71	0.83	2.17	19600	2424	8	0	4	0	0	logfile
✔	7RQX	24639	2023-02-27	2021-08-08	3.36	3.59	—	3.5	0.012	1.06	0.0	0.06	16.98	0.01	2.227	8.03	0.00	3.4	96.6	0.0	-0.29	0.67	0.75	2.39	3.5	0.003	0.48	0.0	0.03	16.18	0.00	2.021	8.41	0.07	3.9	96.1	0.0	0.47	1.13	0.67	0.80	2.59	30450	2016	8	0	26	0	14344	logfile
✔	7Eo2	31225	2023-02-18	2021-04-21	2.89	3.28	—	3.4	0.005	0.77	0.0	0.05	13.25	0.00	2.152	0.90	0.00	4.1	95.9	0.0	-0.60	0.59	0.72	2.59	3.4	0.003	0.61	0.0	0.04	15.32	0.00	2.143	7.00	1.75	3.0	97.0	0.0	1.01	0.50	0.49	0.66	2.06	8865	1126	6	0	1	0	0	logfile
✔	7KiP	22889	2023-02-27	2020-10-24	3.39	4.00	3.47	3.9	0.009	0.90	0.0	0.06	8.62	0.01	2.290	1.86	0.00	7.9	92.1	0.1	-4.05	0.83	0.84	3.42	3.9	0.003	0.55	0.0	0.04	11.32	0.00	2.214	4.09	0.13	5.8	94.2	0.0	-1.42	0.57	0.85	0.87	2.65	30612	3576	69	0	222	0	0	logfile
✔	3JD3	6632	2023-02-24	2016-03-28	3.6	3.38	—	3.5	0.011	1.02	0.0	0.06	11.40	0.01	2.125	18.17	0.00	10.7	89.3	0.0	-5.32	0.81	0.80	2.72	3.2	0.003	0.65	0.0	0.04	15.34	0.00	2.140	12.61	0.28	4.0	96.0	0.0	-0.42	1.00	0.81	0.83	2.27	24006	2976	12	0	18	0	0	logfile
✔	8DN8	27556	2023-02-20	2022-07-10	3.7	4.03	3.79	4.0	0.003	0.61	0.0	0.04	13.76	0.00	2.157	9.82	0.00	6.0	94.0	0.0	-0.14	0.72	0.82	1.16	3.9	0.003	0.66	0.0	0.04	16.11	0.00	2.185	11.45	0.60	5.6	94.4	0.0	-0.15	0.57	0.72	0.81	1.19	10638	1300	6	0	2	0	0	logfile
✔	7TJU	25932	2023-02-24	2022-01-17	3.3	3.57	3.40	3.5	0.002	0.59	0.0	0.05	11.98	0.00	2.070	2.00	0.00	1.4	98.6	0.0	0.36	0.77	0.84	3.19	3.5	0.002	0.55	0.0	0.04	14.31	0.00	1.966	6.06	0.27	1.8	98.2	0.0	0.94	0.52	0.79	0.87	2.50	22687	3102	11	0	7	0	0	logfile
✔	7TJS	25930	2023-02-24	2022-01-17	3.2	3.47	3.27	3.4	0.003	0.60	0.0	0.05	12.62	0.00	1.901	1.77	0.00	1.5	98.5	0.0	0.55	0.78	0.85	3.14	3.4	0.006	0.65	0.0	0.05	15.00	0.00	1.883	5.67	0.16	2.6	97.4	0.0	0.79	0.54	0.73	0.86	2.54	23539	3102	12	0	8	0	0	logfile
✔	7URG	26712	2023-02-17	2022-04-21	3.46	3.69	3.49	3.7	0.002	0.50	0.0	0.04	15.44	0.00	2.229	4.69	0.00	3.5	96.5	0.0	0.73	0.69	0.75	2.59	3.7	0.004	0.59	0.0	0.04	16.80	0.00	2.242	5.34	0.15	5.8	94.2	0.0	-0.19	0.50	0.74	0.79	2.15	6260	802	4	0	2	0	0	logfile
✔	6VE3	21153	2023-02-24	2019-12-28	4.3	4.68	4.39	4.4	0.005	1.17	2.0	0.07	5.96	0.01	2.179	22.46	0.00	3.4	96.3	0.3	-0.31	0.81	0.69	—	4.4	0.004	0.91	0.0	0.05	7.54	0.00	2.122	11.06	0.00	11.2	88.8	0.0	-2.55	1.90	0.82	0.82	—	22484	4578	14	0	0	0	0	logfile

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