Table showing results for September 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7KZP	23085	2021-09-16	2020-12-10	3.1	3.43	—	3.4	0.013	1.47	2.0	0.07	15.82	0.01	1.936	3.39	0.59	8.6	90.8	0.6	-3.29	0.73	0.72	2.32	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	129805	8202	16	0	19	0	65343	logfile
✘	7JK9	22364	2021-09-07	2020-07-28	3.1	2.92	3.11	3.2	0.010	1.23	0.0	0.06	11.40	0.01	1.206	4.99	0.39	1.9	98.1	0.0	-0.20	0.44	0.80	3.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	197360	12640	80	0	120	0	95880	logfile
✘	7A5H	11643	2021-09-07	2020-08-21	3.3	2.71	3.14	3.0	0.014	1.25	0.0	0.07	18.96	0.01	1.312	5.45	10.36	6.6	93.2	0.2	-4.58	0.64	0.80	2.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	102610	8434	66	1586	123	0	0	logfile
✘	7Ji0	22341	2021-09-02	2020-07-21	2.95	3.30	3.08	3.2	0.003	0.48	0.0	0.04	12.97	0.00	2.233	3.80	5.91	4.5	95.5	0.0	-3.04	0.73	0.84	4.32	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3556	432	4	0	0	0	0	logfile
✘	7AHE	11784	2021-09-03	2020-09-24	4.1	4.22	4.11	4.1	0.009	1.11	0.0	0.09	12.70	0.00	2.205	16.11	0.45	9.6	90.4	0.0	-5.40	0.69	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10060	1308	5	0	1	0	0	logfile
✘	6TRD	10559	2021-09-05	2019-12-18	3.16	3.25	—	3.2	0.008	1.11	0.0	0.07	19.23	0.01	1.222	7.96	4.75	8.8	91.2	0.0	-3.67	0.63	0.69	2.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	74991	6849	84	0	402	51	0	logfile
✘	7BBH	12130	2021-09-04	2020-12-17	2.9	3.12	3.00	3.1	0.005	0.71	0.0	0.05	12.20	0.01	2.270	3.02	0.86	3.9	96.1	0.0	-0.97	0.78	0.83	3.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25827	3189	18	0	69	0	0	logfile
✘	6TRC	10558	2021-09-05	2019-12-18	2.98	3.06	—	3.1	0.009	0.99	0.0	0.07	18.71	0.01	1.220	9.37	1.42	7.9	92.1	0.0	-3.92	0.71	0.79	3.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	75591	6849	99	0	402	651	0	logfile
✘	6VVY	21407	2021-09-05	2020-02-18	3.42	4.20	—	3.8	0.007	0.87	1.0	0.05	19.81	0.01	1.180	6.16	4.85	7.6	92.3	0.1	-3.95	0.90	0.87	1.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30033	3516	12	130	4	0	0	logfile
✘	6VVX	21406	2021-09-05	2020-02-18	3.39	4.23	—	3.8	0.007	0.85	0.0	0.05	18.93	0.01	1.182	5.43	3.99	6.2	93.8	0.0	-3.74	0.90	0.87	1.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29858	3508	12	128	4	0	0	logfile
✘	7D45	30570	2021-09-05	2020-09-22	3.8	3.90	—	3.9	0.009	0.93	0.0	0.05	15.23	0.00	2.082	19.49	0.35	16.6	83.1	0.2	-4.81	0.79	0.80	1.51	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	27529	3659	11	0	0	0	0	logfile
✘	6TU4	10587	2021-09-03	2020-01-02	2.6	2.70	2.54	2.7	0.003	0.65	0.0	0.05	14.32	0.00	1.215	3.51	3.10	1.5	98.5	0.0	-1.72	0.66	0.87	4.94	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15690	1860	15	0	15	140	0	logfile
✘	7AHQ	11790	2021-09-03	2020-09-25	3.6	4.20	3.44	3.7	0.011	1.08	0.0	0.07	14.40	0.01	1.179	7.70	0.00	2.5	97.5	0.0	-2.65	0.77	0.82	2.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15055	1855	10	0	20	0	0	logfile
✘	6YBQ	10771	2021-09-05	2020-03-17	1.96	2.06	—	2.0	0.039	1.60	0.0	0.05	15.08	0.01	1.550	4.52	0.00	2.7	97.3	0.0	-1.94	0.82	0.87	6.46	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	34092	4289	36	0	12	871	0	logfile
✘	7JT2	22469	2021-09-08	2020-08-16	3.5	3.91	3.94	3.7	0.007	0.99	0.0	0.08	13.83	0.01	2.265	11.94	0.98	11.4	86.5	2.1	-5.12	0.85	0.83	1.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	145984	5880	55	4660	0	0	0	logfile
✘	7ND4	12275	2021-09-05	2021-01-30	3.6	3.31	—	3.2	0.003	0.57	3.0	0.05	11.05	0.00	2.233	3.79	0.28	4.1	95.6	0.2	-0.12	0.74	0.79	2.91	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29848	3729	30	0	71	0	0	logfile
✘	6LXV	30007	2021-09-02	2020-02-12	2.1	2.18	—	2.2	0.025	1.66	0.0	0.12	16.07	0.01	2.196	1.97	2.81	3.9	95.9	0.1	-1.79	0.78	0.91	6.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	54924	6448	24	0	16	2967	0	logfile
✘	6LT4	0967	2021-09-04	2020-01-21	4.5	4.86	—	4.8	0.006	0.93	0.0	0.05	15.21	0.00	1.863	24.98	1.54	7.7	92.3	0.0	-0.98	0.75	0.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	68432	8722	28	0	56	0	0	logfile
✘	7AGG	11779	2021-09-02	2020-09-22	3.3	3.68	—	3.6	0.007	0.79	0.0	0.05	13.16	0.01	1.980	6.95	0.00	4.2	95.8	0.0	-1.18	0.83	0.80	3.30	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8252	1056	5	0	0	0	0	logfile
✘	6YEZ	10798	2021-09-06	2020-03-25	2.7	3.21	2.66	3.1	0.025	2.90	6.0	0.13	22.85	0.02	1.193	30.64	0.64	5.2	94.5	0.3	-1.96	0.77	0.87	2.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39226	3438	35	0	244	2	0	logfile

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