Table showing results for June 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6WXV	21964	2021-06-02	2020-05-12	3.3	3.75	—	3.7	0.007	0.88	2.0	0.05	13.16	0.01	1.217	9.50	0.47	5.5	94.4	0.2	-4.42	0.71	0.77	2.94	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10605	1319	5	0	15	0	0	logfile
✘	7A94	11684	2021-06-04	2020-09-01	3.9	4.30	4.00	4.0	0.007	0.86	3.0	0.05	13.52	0.01	2.085	3.38	0.87	6.8	93.2	0.0	-1.82	0.89	0.84	1.86	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30463	3825	8	0	24	0	0	logfile
✘	6UZV	20963	2021-06-02	2019-11-15	3.1	3.13	—	3.2	0.009	0.97	0.0	0.06	18.91	0.03	1.217	11.42	0.89	4.2	95.8	0.0	-1.85	0.71	0.84	3.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72606	6711	60	0	408	0	0	logfile
✘	6WW7	21929	2021-06-02	2020-05-08	3.4	3.55	3.34	3.5	0.004	0.58	0.0	0.04	15.06	0.00	2.145	6.96	2.92	2.9	97.1	0.0	-2.34	0.76	0.84	2.50	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16576	2060	13	0	20	0	0	logfile
✘	6K7Y	9945	2021-06-04	2019-06-10	3.6	3.57	—	3.5	0.008	0.82	0.0	0.21	15.91	0.00	2.190	6.98	0.06	4.7	95.2	0.1	-1.75	0.81	0.85	2.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32956	3872	29	0	26	0	0	logfile
✘	6Z2K	11042	2021-06-04	2020-05-16	4.5	4.70	4.41	4.5	0.006	0.98	0.0	0.08	14.93	0.01	1.425	5.18	0.15	9.0	90.8	0.2	-3.76	0.80	0.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	37843	2379	19	0	16	0	18577	logfile
✘	6SMQ	10245	2021-06-05	2019-08-22	3.3	3.30	—	3.3	0.011	1.01	0.0	0.06	14.95	0.01	2.261	3.37	0.43	7.4	92.4	0.2	-3.34	0.78	0.88	4.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22136	2791	9	0	9	0	0	logfile
✘	6VXi	21438	2021-06-01	2020-02-21	3.7	3.67	—	3.7	0.024	1.00	0.0	0.12	15.97	0.01	2.281	6.73	2.07	9.5	90.3	0.2	-6.00	0.61	0.79	2.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8898	1132	4	0	3	0	0	logfile
✘	6KWX	0780	2021-06-02	2019-09-09	3.75	4.07	—	4.0	0.011	1.55	1.0	0.08	12.87	0.01	1.425	13.84	1.69	9.0	90.6	0.3	-4.69	0.68	0.72	1.40	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14227	1751	1	0	2	0	0	logfile
✘	6L4T	0834	2021-06-03	2019-10-21	2.6	2.86	—	2.7	0.026	2.51	0.0	0.07	19.28	0.02	1.166	8.87	0.27	8.0	91.8	0.2	-5.26	0.67	0.84	3.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23863	1851	26	0	192	12	0	logfile
✘	6VAF	21139	2021-06-02	2019-12-17	3.9	4.03	—	4.0	0.014	1.95	3.0	0.08	18.58	0.01	2.074	4.37	0.54	8.9	90.7	0.4	-3.45	0.73	0.75	0.99	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	41243	2429	5	58	0	0	20677	logfile
✘	6oEE	20020	2021-06-03	2019-03-27	3.8	3.96	—	3.8	0.008	1.19	0.0	0.06	17.19	0.01	2.159	9.17	3.57	14.9	85.1	0.0	-4.60	0.35	0.74	0.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	28000	3402	14	0	0	0	0	logfile
✘	6VAD	21137	2021-06-02	2019-12-17	3.3	3.38	—	3.4	0.014	1.71	1.0	0.08	16.59	0.01	1.974	4.90	1.13	6.2	93.5	0.2	-2.40	0.66	0.64	1.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	37613	2321	2	0	0	0	19096	logfile
✘	6QC2	4494	2021-06-03	2018-12-26	4.2	4.29	4.30	4.2	0.009	1.25	1.0	0.85	11.63	0.01	1.226	7.56	0.57	11.4	88.5	0.1	-3.91	0.69	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	96938	12000	83	0	93	0	0	logfile
✘	6RDG	4817	2021-06-04	2019-04-12	2.9	2.99	2.90	3.0	0.005	0.83	0.0	0.05	13.99	0.01	1.951	6.35	0.22	3.6	96.2	0.2	-4.83	0.69	0.84	3.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	33964	4507	31	0	10	34	0	logfile
✘	6QC3	4495	2021-06-03	2018-12-26	4.2	4.28	4.21	4.2	0.010	1.33	1.0	0.85	11.92	0.01	1.224	8.13	0.75	11.7	88.1	0.1	-3.94	0.67	0.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	96897	12010	84	0	77	0	0	logfile
✘	7CWM	30483	2021-06-04	2020-08-29	3.6	4.19	—	3.6	0.008	1.04	2.0	0.07	9.90	0.01	1.512	21.95	0.54	7.7	92.3	0.1	-3.56	0.73	0.65	1.87	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30772	3883	26	0	44	0	0	logfile
✘	7C8D	30305	2021-06-02	2020-05-29	3.0	2.79	—	2.8	0.003	0.53	0.0	0.04	17.37	0.00	1.998	8.71	5.90	3.6	96.4	0.0	-2.80	0.71	0.76	3.07	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6359	792	3	0	1	0	0	logfile
✘	6YRK	10890	2021-06-03	2020-04-20	4.1	4.59	—	4.0	0.014	1.85	13.0	0.12	18.90	0.01	2.473	6.61	12.77	6.4	93.2	0.5	-2.49	0.68	0.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15058	1937	2	0	0	0	0	logfile
✘	6LSS	0964	2021-06-02	2020-01-20	3.23	3.30	—	3.2	0.011	1.15	5.0	0.06	16.97	0.03	1.330	4.42	0.86	7.7	92.1	0.2	-4.03	0.79	0.81	2.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	140565	7369	67	3750	250	16	20	logfile

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