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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7XPZ | 33386 | 2023-02-17 | 2022-05-06 | 3.4 | 3.31 | 3.34 | 3.6 | 0.005 | 0.73 | 0.0 | 0.05 | 12.26 | 0.01 | 2.311 | 6.57 | 0.58 | 5.5 | 94.5 | 0.0 | -6.77 | 0.49 | 0.79 | 3.43 | 3.6 | 0.004 | 0.68 | 0.0 | 0.04 | 14.09 | 0.00 | 2.156 | 8.10 | 0.58 | 5.0 | 95.0 | 0.0 | -0.80 | 1.17 | 0.43 | 0.76 | 2.59 | 3227 | 402 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oFH | 20046 | 2023-02-20 | 2019-03-29 | 3.7 | 3.79 | — | 3.8 | 0.008 | 0.75 | 0.0 | 0.05 | 7.71 | 0.01 | 2.097 | 3.74 | 0.00 | 5.3 | 94.7 | 0.0 | -6.76 | 0.59 | 0.83 | 1.69 | 3.8 | 0.004 | 0.69 | 0.0 | 0.04 | 17.12 | 0.00 | 2.115 | 10.05 | 0.40 | 3.5 | 96.5 | 0.0 | 1.97 | 0.84 | 0.60 | 0.84 | 0.81 | 11628 | 1482 | 19 | 0 | 0 | 0 | 0 | logfile |
✔ | 7K4A | 22662 | 2023-02-23 | 2020-09-15 | 3.26 | 3.68 | — | 3.7 | 0.013 | 1.44 | 0.0 | 0.06 | 14.78 | 0.01 | 2.263 | 3.83 | 0.52 | 10.5 | 89.4 | 0.2 | -6.74 | 0.52 | 0.81 | 4.18 | 3.7 | 0.003 | 0.72 | 0.0 | 0.04 | 15.32 | 0.00 | 2.180 | 8.02 | 0.38 | 9.7 | 90.3 | 0.0 | -2.20 | 1.34 | 0.62 | 0.86 | 2.52 | 20825 | 2420 | 8 | 0 | 65 | 0 | 0 | logfile |
✔ | 7V2W | 31669 | 2023-02-23 | 2021-08-10 | 3.2 | 3.43 | — | 3.4 | 0.006 | 1.08 | 0.0 | 0.05 | 15.89 | 0.01 | 2.276 | 2.96 | 0.24 | 7.1 | 92.9 | 0.1 | -6.70 | 0.74 | 0.82 | 2.09 | 3.4 | 0.002 | 0.63 | 0.0 | 0.04 | 17.21 | 0.00 | 2.167 | 6.01 | 0.04 | 6.1 | 93.9 | 0.0 | -1.69 | 0.66 | 0.76 | 0.84 | 1.31 | 21619 | 2655 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7D10 | 30542 | 2023-02-17 | 2020-09-12 | 3.52 | 3.70 | — | 3.7 | 0.007 | 1.05 | 0.0 | 0.06 | 10.87 | 0.01 | 2.249 | 4.93 | 0.00 | 8.9 | 90.6 | 0.5 | -6.70 | 0.65 | 0.83 | 3.73 | 3.7 | 0.003 | 0.64 | 0.0 | 0.04 | 13.88 | 0.00 | 2.238 | 7.52 | 0.34 | 6.4 | 93.6 | 0.0 | -1.75 | 1.20 | 0.63 | 0.83 | 2.64 | 6424 | 892 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 6TUQ | 10594 | 2023-02-21 | 2020-01-08 | 3.9 | 4.52 | — | 4.0 | 0.009 | 1.01 | 0.0 | 0.05 | 11.22 | 0.00 | 2.191 | 8.45 | 3.12 | 0.0 | 100.0 | 0.0 | -6.69 | 0.68 | 0.88 | 0.54 | 4.0 | 0.003 | 0.70 | 0.0 | 0.04 | 12.36 | 0.00 | 2.317 | 11.19 | 0.12 | 0.3 | 99.7 | 0.0 | -0.42 | 1.65 | 0.69 | 0.88 | 0.65 | 16100 | 2300 | 50 | 0 | 0 | 0 | 0 | logfile |
✔ | 6HYD | 0308 | 2023-02-20 | 2018-10-19 | 3.9 | 4.01 | — | 4.0 | 0.004 | 0.85 | 0.0 | 0.05 | 9.33 | 0.01 | 2.319 | 2.63 | 0.24 | 5.7 | 94.0 | 0.3 | -6.69 | 0.74 | 0.77 | 2.59 | 4.0 | 0.003 | 0.66 | 0.0 | 0.04 | 14.61 | 0.00 | 2.180 | 5.80 | 0.40 | 5.3 | 94.6 | 0.1 | -1.15 | 1.75 | 0.76 | 0.79 | 1.50 | 12168 | 1543 | 1 | 0 | 31 | 0 | 0 | logfile |
✔ | 6S8G | 10121 | 2023-02-19 | 2019-07-10 | 3.5 | 3.70 | — | 3.7 | 0.010 | 1.32 | 0.0 | 0.06 | 17.19 | 0.01 | 2.294 | 5.68 | 3.86 | 14.7 | 85.2 | 0.1 | -6.67 | 0.67 | 0.82 | 1.81 | 3.7 | 0.006 | 0.86 | 0.0 | 0.05 | 18.00 | 0.00 | 2.138 | 11.17 | 0.50 | 14.0 | 85.9 | 0.1 | -3.20 | 0.72 | 0.68 | 0.84 | 1.72 | 7530 | 957 | 7 | 0 | 3 | 0 | 0 | logfile |
✔ | 5o3L | 3741 | 2023-02-20 | 2017-05-24 | 3.4 | 3.71 | 3.34 | 3.7 | 0.012 | 1.03 | 0.0 | 0.06 | 8.97 | 0.01 | 2.111 | 9.60 | 0.00 | 22.4 | 77.6 | 0.0 | -6.67 | 0.60 | 0.69 | 2.44 | 3.6 | 0.004 | 0.78 | 0.0 | 0.05 | 15.54 | 0.01 | 1.937 | 16.37 | 0.78 | 13.9 | 86.1 | 0.0 | -5.24 | 2.68 | 0.57 | 0.75 | 2.67 | 11360 | 730 | 10 | 0 | 0 | 0 | 5790 | logfile |
✘ | 6PWE | 20506 | 2023-02-20 | 2019-07-22 | 3.95 | 4.04 | — | 4.0 | 0.010 | 0.93 | 0.0 | 0.05 | 27.27 | 0.01 | 2.264 | 5.38 | 0.00 | 7.4 | 92.3 | 0.3 | -6.65 | 0.70 | 0.80 | 2.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11923 | 744 | 10 | 294 | 0 | 0 | 0 | logfile |
✔ | 6QM5 | 4588 | 2023-02-19 | 2019-02-01 | 3.6 | 3.74 | 3.61 | 3.7 | 0.007 | 0.83 | 0.0 | 0.05 | 15.76 | 0.01 | 2.311 | 4.02 | 0.00 | 4.1 | 95.9 | 0.0 | -6.65 | 0.70 | 0.85 | 2.84 | 3.7 | 0.005 | 0.68 | 0.0 | 0.04 | 16.89 | 0.00 | 2.118 | 7.80 | 0.26 | 3.5 | 96.5 | 0.0 | -0.81 | 0.50 | 0.70 | 0.85 | 2.00 | 10874 | 1346 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 6H3J | 0134 | 2023-02-23 | 2018-07-18 | 3.7 | 3.83 | — | 3.7 | 0.007 | 0.87 | 0.0 | 0.05 | 10.17 | 0.00 | 2.025 | 43.38 | 0.05 | 23.8 | 76.2 | 0.0 | -6.63 | 0.77 | 0.85 | 3.89 | 3.7 | 0.003 | 0.62 | 0.0 | 0.04 | 13.49 | 0.00 | 1.880 | 56.27 | 0.36 | 20.2 | 79.8 | 0.0 | -5.27 | 2.68 | 0.77 | 0.86 | 2.92 | 20301 | 2511 | 3 | 0 | 0 | 0 | 212 | logfile |
✔ | 6S8N | 10125 | 2023-02-18 | 2019-07-10 | 3.1 | 3.26 | — | 3.3 | 0.012 | 1.73 | 0.0 | 0.06 | 16.50 | 0.01 | 1.791 | 6.47 | 0.12 | 8.7 | 91.1 | 0.2 | -6.61 | 0.69 | 0.82 | 1.71 | 3.3 | 0.005 | 0.80 | 0.0 | 0.04 | 17.11 | 0.00 | 1.958 | 9.20 | 0.85 | 6.7 | 93.2 | 0.1 | -1.62 | 0.65 | 0.69 | 0.85 | 1.68 | 7831 | 970 | 8 | 0 | 7 | 0 | 0 | logfile |
✔ | 3LoS | 5137 | 2023-02-24 | 2010-02-04 | 4.3 | 2.98 | — | 3.0 | 0.008 | 2.44 | 224.0 | 0.19 | 19.87 | 0.01 | 2.259 | 87.93 | 23.89 | 17.4 | 68.9 | 13.8 | -6.57 | 0.57 | 0.49 | — | 3.2 | 0.004 | 1.16 | 0.0 | 0.05 | 15.91 | 0.01 | 2.171 | 27.07 | 0.03 | 20.2 | 75.7 | 4.1 | -4.25 | 1.37 | 0.62 | 0.54 | — | 63712 | 8512 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6YKP | 10829 | 2023-02-19 | 2020-04-06 | 2.98 | 3.28 | 3.05 | 3.3 | 0.014 | 1.23 | 0.0 | 0.07 | 10.75 | 0.01 | 2.350 | 2.72 | 0.09 | 3.0 | 97.0 | 0.1 | -6.56 | 0.59 | 0.85 | 4.85 | 3.3 | 0.003 | 0.74 | 0.0 | 0.04 | 15.75 | 0.00 | 2.236 | 7.04 | 1.85 | 2.4 | 97.5 | 0.1 | 0.81 | 1.11 | 0.60 | 0.86 | 3.06 | 10190 | 1326 | 9 | 0 | 0 | 7 | 0 | logfile |
✔ | 6JCW | 9799 | 2023-02-27 | 2019-01-30 | 3.04 | 3.78 | — | 3.4 | 0.007 | 0.88 | 0.0 | 0.05 | 15.38 | 0.01 | 2.168 | 1.88 | 0.35 | 6.1 | 93.9 | 0.0 | -6.55 | 0.88 | 0.88 | 4.46 | 3.5 | 0.004 | 0.68 | 0.0 | 0.04 | 16.33 | 0.00 | 2.162 | 4.95 | 0.03 | 3.5 | 96.5 | 0.0 | -0.07 | 1.31 | 0.86 | 0.89 | 3.75 | 30888 | 3912 | 36 | 0 | 24 | 100 | 0 | logfile |
✔ | 7L1K | 23110 | 2023-02-18 | 2020-12-14 | 3.16 | 3.38 | 3.16 | 3.4 | 0.011 | 1.35 | 5.0 | 0.27 | 15.11 | 0.01 | 2.317 | 5.55 | 0.75 | 9.8 | 89.9 | 0.3 | -6.55 | 0.73 | 0.88 | 3.48 | 3.4 | 0.003 | 0.67 | 0.0 | 0.04 | 16.17 | 0.00 | 2.218 | 7.57 | 0.38 | 7.8 | 92.2 | 0.0 | -1.95 | 0.95 | 0.75 | 0.89 | 2.69 | 7217 | 883 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 7V4C | 31707 | 2023-02-16 | 2021-08-12 | 3.3 | 2.93 | — | 3.4 | 0.008 | 0.75 | 0.0 | 0.06 | 12.47 | 0.00 | 2.305 | 12.50 | 0.00 | 20.0 | 80.0 | 0.0 | -6.54 | 0.40 | 0.83 | 2.37 | 3.4 | 0.002 | 0.61 | 0.0 | 0.05 | 17.20 | 0.00 | 2.152 | 4.55 | 1.52 | 6.1 | 93.9 | 0.0 | -4.30 | 2.19 | 0.40 | 0.82 | 3.23 | 1287 | 186 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6o6R | 0636 | 2023-02-26 | 2019-03-07 | 3.2 | 3.33 | — | 3.3 | 0.010 | 1.01 | 0.0 | 0.06 | 15.85 | 0.01 | 2.114 | 7.37 | 0.00 | 7.6 | 92.4 | 0.0 | -6.54 | 0.61 | 0.79 | 2.48 | 3.3 | 0.003 | 0.66 | 0.0 | 0.04 | 16.63 | 0.00 | 2.224 | 11.10 | 0.13 | 8.0 | 92.0 | 0.0 | -0.90 | 0.55 | 0.61 | 0.81 | 2.15 | 27744 | 3332 | 8 | 0 | 28 | 0 | 0 | logfile |
✔ | 6GCT | 4386 | 2023-02-19 | 2018-04-19 | 3.85 | 3.94 | 3.80 | 3.9 | 0.012 | 1.40 | 0.0 | 0.07 | 14.50 | 0.01 | 2.330 | 6.80 | 5.57 | 5.8 | 93.9 | 0.2 | -6.53 | 0.67 | 0.83 | 1.60 | 3.9 | 0.006 | 1.07 | 0.0 | 0.05 | 15.31 | 0.00 | 2.130 | 16.47 | 0.98 | 5.8 | 94.2 | 0.0 | -2.26 | 0.72 | 0.65 | 0.84 | 1.77 | 9672 | 1299 | 6 | 0 | 0 | 0 | 0 | logfile |