Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XPZ	33386	2023-02-17	2022-05-06	3.4	3.31	3.34	3.6	0.005	0.73	0.0	0.05	12.26	0.01	2.311	6.57	0.58	5.5	94.5	0.0	-6.77	0.49	0.79	3.43	3.6	0.004	0.68	0.0	0.04	14.09	0.00	2.156	8.10	0.58	5.0	95.0	0.0	-0.80	1.17	0.43	0.76	2.59	3227	402	1	0	0	0	0	logfile
✔	6oFH	20046	2023-02-20	2019-03-29	3.7	3.79	—	3.8	0.008	0.75	0.0	0.05	7.71	0.01	2.097	3.74	0.00	5.3	94.7	0.0	-6.76	0.59	0.83	1.69	3.8	0.004	0.69	0.0	0.04	17.12	0.00	2.115	10.05	0.40	3.5	96.5	0.0	1.97	0.84	0.60	0.84	0.81	11628	1482	19	0	0	0	0	logfile
✔	7K4A	22662	2023-02-23	2020-09-15	3.26	3.68	—	3.7	0.013	1.44	0.0	0.06	14.78	0.01	2.263	3.83	0.52	10.5	89.4	0.2	-6.74	0.52	0.81	4.18	3.7	0.003	0.72	0.0	0.04	15.32	0.00	2.180	8.02	0.38	9.7	90.3	0.0	-2.20	1.34	0.62	0.86	2.52	20825	2420	8	0	65	0	0	logfile
✔	7V2W	31669	2023-02-23	2021-08-10	3.2	3.43	—	3.4	0.006	1.08	0.0	0.05	15.89	0.01	2.276	2.96	0.24	7.1	92.9	0.1	-6.70	0.74	0.82	2.09	3.4	0.002	0.63	0.0	0.04	17.21	0.00	2.167	6.01	0.04	6.1	93.9	0.0	-1.69	0.66	0.76	0.84	1.31	21619	2655	5	0	0	0	0	logfile
✔	7D10	30542	2023-02-17	2020-09-12	3.52	3.70	—	3.7	0.007	1.05	0.0	0.06	10.87	0.01	2.249	4.93	0.00	8.9	90.6	0.5	-6.70	0.65	0.83	3.73	3.7	0.003	0.64	0.0	0.04	13.88	0.00	2.238	7.52	0.34	6.4	93.6	0.0	-1.75	1.20	0.63	0.83	2.64	6424	892	4	0	4	0	0	logfile
✔	6TUQ	10594	2023-02-21	2020-01-08	3.9	4.52	—	4.0	0.009	1.01	0.0	0.05	11.22	0.00	2.191	8.45	3.12	0.0	100.0	0.0	-6.69	0.68	0.88	0.54	4.0	0.003	0.70	0.0	0.04	12.36	0.00	2.317	11.19	0.12	0.3	99.7	0.0	-0.42	1.65	0.69	0.88	0.65	16100	2300	50	0	0	0	0	logfile
✔	6HYD	0308	2023-02-20	2018-10-19	3.9	4.01	—	4.0	0.004	0.85	0.0	0.05	9.33	0.01	2.319	2.63	0.24	5.7	94.0	0.3	-6.69	0.74	0.77	2.59	4.0	0.003	0.66	0.0	0.04	14.61	0.00	2.180	5.80	0.40	5.3	94.6	0.1	-1.15	1.75	0.76	0.79	1.50	12168	1543	1	0	31	0	0	logfile
✔	6S8G	10121	2023-02-19	2019-07-10	3.5	3.70	—	3.7	0.010	1.32	0.0	0.06	17.19	0.01	2.294	5.68	3.86	14.7	85.2	0.1	-6.67	0.67	0.82	1.81	3.7	0.006	0.86	0.0	0.05	18.00	0.00	2.138	11.17	0.50	14.0	85.9	0.1	-3.20	0.72	0.68	0.84	1.72	7530	957	7	0	3	0	0	logfile
✔	5o3L	3741	2023-02-20	2017-05-24	3.4	3.71	3.34	3.7	0.012	1.03	0.0	0.06	8.97	0.01	2.111	9.60	0.00	22.4	77.6	0.0	-6.67	0.60	0.69	2.44	3.6	0.004	0.78	0.0	0.05	15.54	0.01	1.937	16.37	0.78	13.9	86.1	0.0	-5.24	2.68	0.57	0.75	2.67	11360	730	10	0	0	0	5790	logfile
✘	6PWE	20506	2023-02-20	2019-07-22	3.95	4.04	—	4.0	0.010	0.93	0.0	0.05	27.27	0.01	2.264	5.38	0.00	7.4	92.3	0.3	-6.65	0.70	0.80	2.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11923	744	10	294	0	0	0	logfile
✔	6QM5	4588	2023-02-19	2019-02-01	3.6	3.74	3.61	3.7	0.007	0.83	0.0	0.05	15.76	0.01	2.311	4.02	0.00	4.1	95.9	0.0	-6.65	0.70	0.85	2.84	3.7	0.005	0.68	0.0	0.04	16.89	0.00	2.118	7.80	0.26	3.5	96.5	0.0	-0.81	0.50	0.70	0.85	2.00	10874	1346	4	0	4	0	0	logfile
✔	6H3J	0134	2023-02-23	2018-07-18	3.7	3.83	—	3.7	0.007	0.87	0.0	0.05	10.17	0.00	2.025	43.38	0.05	23.8	76.2	0.0	-6.63	0.77	0.85	3.89	3.7	0.003	0.62	0.0	0.04	13.49	0.00	1.880	56.27	0.36	20.2	79.8	0.0	-5.27	2.68	0.77	0.86	2.92	20301	2511	3	0	0	0	212	logfile
✔	6S8N	10125	2023-02-18	2019-07-10	3.1	3.26	—	3.3	0.012	1.73	0.0	0.06	16.50	0.01	1.791	6.47	0.12	8.7	91.1	0.2	-6.61	0.69	0.82	1.71	3.3	0.005	0.80	0.0	0.04	17.11	0.00	1.958	9.20	0.85	6.7	93.2	0.1	-1.62	0.65	0.69	0.85	1.68	7831	970	8	0	7	0	0	logfile
✔	3LoS	5137	2023-02-24	2010-02-04	4.3	2.98	—	3.0	0.008	2.44	224.0	0.19	19.87	0.01	2.259	87.93	23.89	17.4	68.9	13.8	-6.57	0.57	0.49	—	3.2	0.004	1.16	0.0	0.05	15.91	0.01	2.171	27.07	0.03	20.2	75.7	4.1	-4.25	1.37	0.62	0.54	—	63712	8512	16	0	0	0	0	logfile
✔	6YKP	10829	2023-02-19	2020-04-06	2.98	3.28	3.05	3.3	0.014	1.23	0.0	0.07	10.75	0.01	2.350	2.72	0.09	3.0	97.0	0.1	-6.56	0.59	0.85	4.85	3.3	0.003	0.74	0.0	0.04	15.75	0.00	2.236	7.04	1.85	2.4	97.5	0.1	0.81	1.11	0.60	0.86	3.06	10190	1326	9	0	0	7	0	logfile
✔	6JCW	9799	2023-02-27	2019-01-30	3.04	3.78	—	3.4	0.007	0.88	0.0	0.05	15.38	0.01	2.168	1.88	0.35	6.1	93.9	0.0	-6.55	0.88	0.88	4.46	3.5	0.004	0.68	0.0	0.04	16.33	0.00	2.162	4.95	0.03	3.5	96.5	0.0	-0.07	1.31	0.86	0.89	3.75	30888	3912	36	0	24	100	0	logfile
✔	7L1K	23110	2023-02-18	2020-12-14	3.16	3.38	3.16	3.4	0.011	1.35	5.0	0.27	15.11	0.01	2.317	5.55	0.75	9.8	89.9	0.3	-6.55	0.73	0.88	3.48	3.4	0.003	0.67	0.0	0.04	16.17	0.00	2.218	7.57	0.38	7.8	92.2	0.0	-1.95	0.95	0.75	0.89	2.69	7217	883	6	0	2	0	0	logfile
✔	7V4C	31707	2023-02-16	2021-08-12	3.3	2.93	—	3.4	0.008	0.75	0.0	0.06	12.47	0.00	2.305	12.50	0.00	20.0	80.0	0.0	-6.54	0.40	0.83	2.37	3.4	0.002	0.61	0.0	0.05	17.20	0.00	2.152	4.55	1.52	6.1	93.9	0.0	-4.30	2.19	0.40	0.82	3.23	1287	186	3	0	0	0	0	logfile
✔	6o6R	0636	2023-02-26	2019-03-07	3.2	3.33	—	3.3	0.010	1.01	0.0	0.06	15.85	0.01	2.114	7.37	0.00	7.6	92.4	0.0	-6.54	0.61	0.79	2.48	3.3	0.003	0.66	0.0	0.04	16.63	0.00	2.224	11.10	0.13	8.0	92.0	0.0	-0.90	0.55	0.61	0.81	2.15	27744	3332	8	0	28	0	0	logfile
✔	6GCT	4386	2023-02-19	2018-04-19	3.85	3.94	3.80	3.9	0.012	1.40	0.0	0.07	14.50	0.01	2.330	6.80	5.57	5.8	93.9	0.2	-6.53	0.67	0.83	1.60	3.9	0.006	1.07	0.0	0.05	15.31	0.00	2.130	16.47	0.98	5.8	94.2	0.0	-2.26	0.72	0.65	0.84	1.77	9672	1299	6	0	0	0	0	logfile

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