Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6PVN	20494	2023-08-16	2019-07-21	4.07	4.15	—	4.1	0.006	1.33	0.0	0.06	12.87	0.01	2.256	4.31	1.23	14.2	85.3	0.5	-6.84	0.68	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20874	2576	6	0	2	0	0	logfile
✔	7XQ1	33388	2023-08-09	2022-05-06	3.4	3.32	3.36	3.5	0.012	1.53	1.0	0.06	13.52	0.01	2.320	6.82	0.58	2.8	97.2	0.0	-6.81	0.47	0.78	3.56	3.5	0.003	0.62	0.0	0.04	15.87	0.00	2.120	8.80	0.00	2.3	97.7	0.0	0.66	1.19	0.50	0.81	1.80	3302	400	1	0	2	0	0	logfile
✔	6X3F	22021	2023-08-11	2020-05-21	3.03	3.23	—	3.3	0.006	0.93	0.0	0.06	14.72	0.01	2.351	3.78	0.00	5.0	95.0	0.0	-6.78	0.58	0.85	3.24	3.3	0.003	0.61	0.0	0.04	15.78	0.00	2.282	6.67	0.10	3.6	96.4	0.0	-0.25	0.95	0.53	0.84	2.06	9366	1227	6	0	3	0	0	logfile
✔	7XPZ	33386	2023-08-09	2022-05-06	3.4	3.31	3.34	3.6	0.005	0.73	0.0	0.05	12.26	0.01	2.311	6.57	0.58	5.5	94.5	0.0	-6.77	0.49	0.79	3.43	3.6	0.004	0.68	0.0	0.04	14.09	0.00	2.156	8.10	0.58	5.0	95.0	0.0	-0.80	1.17	0.43	0.76	2.59	3227	402	1	0	0	0	0	logfile
✔	6KiQ	9997	2023-08-13	2019-07-19	3.62	3.66	—	3.8	0.035	3.74	145.0	0.27	19.81	0.04	2.201	12.20	14.75	18.6	70.7	10.7	-6.77	0.58	0.71	1.68	3.5	0.004	0.79	0.0	0.04	17.23	0.01	2.014	12.73	0.24	12.6	86.8	0.6	-2.74	1.16	0.62	0.75	1.20	15093	968	3	0	0	0	7444	logfile
✔	8GMP	40229	2023-08-13	2023-03-27	2.8	3.00	2.80	3.0	0.006	1.09	0.0	0.05	16.74	0.01	2.357	12.47	2.96	4.8	95.2	0.0	-6.76	0.65	0.82	2.44	3.0	0.003	0.66	0.0	0.04	17.77	0.01	2.447	4.15	2.14	4.7	95.3	0.0	0.17	0.54	0.61	0.82	2.52	13656	1728	16	0	8	0	0	logfile
✔	6oFH	20046	2023-08-12	2019-03-29	3.7	3.79	—	3.8	0.008	0.75	0.0	0.05	7.71	0.01	2.097	3.74	0.00	5.3	94.7	0.0	-6.76	0.59	0.83	1.69	3.8	0.004	0.69	0.0	0.04	17.12	0.00	2.115	10.05	0.40	3.5	96.5	0.0	1.97	0.84	0.60	0.84	0.81	11628	1482	19	0	0	0	0	logfile
✔	7K4A	22662	2023-08-16	2020-09-15	3.26	3.68	—	3.7	0.013	1.44	0.0	0.06	14.78	0.01	2.263	3.83	0.52	10.5	89.4	0.2	-6.74	0.52	0.81	4.18	3.7	0.003	0.72	0.0	0.04	15.32	0.00	2.180	8.02	0.38	9.7	90.3	0.0	-2.20	1.34	0.62	0.86	2.52	20825	2420	8	0	65	0	0	logfile
✔	7XQ0	33387	2023-08-09	2022-05-06	3.0	2.77	3.09	3.2	0.018	1.35	0.0	0.05	13.28	0.01	2.232	7.04	0.86	1.5	98.5	0.0	-6.72	0.49	0.79	4.03	3.2	0.004	1.01	0.0	0.04	14.73	0.00	2.177	8.39	2.02	1.5	98.5	0.0	0.86	1.49	0.44	0.77	2.86	3320	402	1	0	2	0	0	logfile
✔	7D10	30542	2023-08-09	2020-09-12	3.52	3.70	—	3.7	0.007	1.05	0.0	0.06	10.87	0.01	2.249	4.93	0.00	8.9	90.6	0.5	-6.70	0.65	0.83	3.73	3.7	0.003	0.64	0.0	0.04	13.88	0.00	2.238	7.52	0.34	6.4	93.6	0.0	-1.75	1.20	0.63	0.83	2.64	6424	892	4	0	4	0	0	logfile
✔	6TUQ	10594	2023-08-14	2020-01-08	3.9	4.52	—	4.0	0.009	1.01	0.0	0.05	11.22	0.00	2.191	8.45	3.12	0.0	100.0	0.0	-6.69	0.68	0.88	0.54	4.0	0.003	0.70	0.0	0.04	12.36	0.00	2.317	11.19	0.12	0.3	99.7	0.0	-0.42	1.65	0.69	0.88	0.65	16100	2300	50	0	0	0	0	logfile
✘	6HYD	0308	2023-08-12	2018-10-19	3.9	4.01	—	4.0	0.004	0.85	0.0	0.05	9.33	0.01	2.319	2.63	0.24	5.7	94.0	0.3	-6.69	0.74	0.77	2.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12168	1543	1	0	31	0	0	logfile
✔	6S8G	10121	2023-08-12	2019-07-10	3.5	3.70	—	3.7	0.010	1.32	0.0	0.06	17.19	0.01	2.294	5.75	3.86	14.7	85.2	0.1	-6.67	0.67	0.82	1.81	3.7	0.006	0.86	0.0	0.05	18.00	0.00	2.138	11.17	0.50	14.0	85.9	0.1	-3.20	0.72	0.68	0.84	1.72	7530	957	7	0	3	0	0	logfile
✔	5o3L	3741	2023-08-12	2017-05-24	3.4	3.71	3.34	3.7	0.012	1.03	0.0	0.06	8.97	0.01	2.111	9.60	0.00	22.4	77.6	0.0	-6.67	0.60	0.69	2.44	3.6	0.004	0.78	0.0	0.05	15.54	0.01	1.937	16.37	0.78	13.9	86.1	0.0	-5.24	2.68	0.57	0.75	2.67	11360	730	10	0	0	0	5790	logfile
✔	6QM5	4588	2023-08-12	2019-02-01	3.6	3.74	3.61	3.7	0.007	0.83	0.0	0.05	15.76	0.01	2.311	4.02	0.00	4.1	95.9	0.0	-6.65	0.70	0.85	2.84	3.7	0.005	0.68	0.0	0.04	16.89	0.00	2.118	7.80	0.26	3.5	96.5	0.0	-0.81	0.50	0.70	0.85	2.00	10874	1346	4	0	4	0	0	logfile
✔	6PWE	20506	2023-08-12	2019-07-22	3.95	4.04	—	4.0	0.010	0.93	0.0	0.05	27.27	0.01	2.264	5.38	0.00	7.4	92.3	0.3	-6.65	0.70	0.80	2.98	4.0	0.004	0.65	0.0	0.03	28.43	0.00	2.085	11.70	0.65	4.3	95.6	0.1	-1.43	1.44	0.70	0.80	1.58	11923	744	10	294	0	0	0	logfile
✔	6S8N	10125	2023-08-10	2019-07-10	3.1	3.26	—	3.3	0.012	1.73	0.0	0.06	16.48	0.01	1.791	6.47	0.12	8.7	91.1	0.2	-6.61	0.69	0.82	1.71	3.3	0.005	0.79	0.0	0.04	17.29	0.00	1.956	9.39	1.10	6.6	93.3	0.1	-1.70	0.64	0.67	0.84	1.66	7831	970	8	0	7	0	0	logfile
✔	7DV5	30870	2023-08-11	2021-01-12	3.7	3.37	—	3.7	0.011	1.46	6.0	0.08	13.90	0.01	1.936	9.61	2.23	11.7	88.2	0.1	-6.60	0.63	0.79	2.16	3.7	0.002	0.66	0.0	0.04	16.09	0.00	2.213	9.45	0.30	6.7	93.3	0.0	-3.47	1.63	0.63	0.78	0.87	9319	1189	1	0	2	0	0	logfile
✔	7YKS	33896	2023-08-15	2022-07-23	3.0	3.20	3.06	4.7	0.008	1.00	0.0	0.06	10.27	0.01	2.291	4.01	0.00	6.7	93.1	0.2	-6.58	0.17	0.11	-0.18	3.2	0.003	0.77	0.0	0.04	16.58	0.00	2.059	8.61	1.28	4.7	95.3	0.0	-0.45	2.19	0.59	0.80	1.54	18984	2364	4	0	0	0	0	logfile
✔	3LoS	5137	2023-08-12	2010-02-04	4.3	2.98	—	3.0	0.008	2.44	224.0	0.19	19.87	0.01	2.259	87.93	23.89	17.4	68.9	13.8	-6.57	0.57	0.49	—	3.2	0.004	1.16	0.0	0.05	15.91	0.01	2.171	27.07	0.03	20.2	75.7	4.1	-4.25	1.37	0.62	0.54	—	63712	8512	16	0	0	0	0	logfile

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