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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6PW5 | 20499 | 2024-03-19 | 2019-07-22 | 3.45 | 3.53 | — | 3.5 | 0.013 | 1.39 | 0.0 | 0.07 | 14.62 | 0.01 | 2.327 | 4.42 | 1.61 | 11.6 | 87.6 | 0.8 | -6.95 | 0.76 | 0.85 | 3.30 | 3.5 | 0.005 | 0.78 | 0.0 | 0.04 | 16.71 | 0.00 | 2.125 | 10.03 | 3.63 | 10.1 | 89.6 | 0.4 | -1.49 | 1.16 | 0.76 | 0.87 | 2.23 | 24740 | 3032 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 6RoW | 4975 | 2024-03-24 | 2019-05-13 | 4.5 | 4.52 | 4.16 | 4.2 | 0.016 | 1.50 | 0.0 | 0.07 | 14.46 | 0.01 | 1.848 | 49.61 | 0.00 | 30.3 | 68.7 | 1.0 | -6.95 | 0.81 | 0.74 | — | 4.2 | 0.004 | 0.68 | 0.0 | 0.04 | 13.65 | 0.00 | 1.945 | 13.20 | 0.05 | 14.3 | 85.5 | 0.1 | -2.60 | 1.48 | 0.82 | 0.73 | — | 43049 | 3129 | 7 | 0 | 0 | 0 | 20156 | logfile |
✔ | 6PW4 | 20498 | 2024-03-18 | 2019-07-22 | 3.53 | 3.64 | — | 3.6 | 0.008 | 1.14 | 0.0 | 0.05 | 17.52 | 0.01 | 2.302 | 5.63 | 0.38 | 10.7 | 89.3 | 0.1 | -6.92 | 0.71 | 0.80 | 1.68 | 3.6 | 0.005 | 0.80 | 0.0 | 0.04 | 17.93 | 0.00 | 2.060 | 13.57 | 3.12 | 10.8 | 89.2 | 0.0 | -2.14 | 0.52 | 0.72 | 0.80 | 1.38 | 22348 | 2742 | 8 | 0 | 10 | 0 | 0 | logfile |
✔ | 6GGS | 4399 | 2024-03-11 | 2018-05-03 | 3.94 | 3.85 | — | 3.8 | 0.006 | 1.15 | 0.0 | 0.07 | 14.10 | 0.00 | 2.060 | 14.46 | 1.27 | 4.8 | 95.2 | 0.0 | -6.91 | 0.49 | 0.77 | 1.98 | 3.8 | 0.003 | 1.01 | 0.0 | 0.04 | 17.23 | 0.00 | 2.120 | 22.62 | 5.95 | 2.4 | 97.6 | 0.0 | -3.34 | 3.52 | 0.50 | 0.76 | 1.59 | 6880 | 860 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 8GA0 | 29883 | 2024-03-11 | 2023-02-22 | 3.5 | 3.76 | 3.70 | 3.7 | 0.004 | 0.84 | 0.0 | 0.05 | 14.18 | 0.01 | 2.274 | 4.15 | 0.00 | 4.8 | 95.2 | 0.0 | -6.86 | 0.65 | 0.78 | 1.71 | 3.7 | 0.003 | 0.66 | 0.0 | 0.04 | 15.76 | 0.00 | 2.187 | 8.75 | 2.72 | 3.2 | 96.8 | 0.0 | -2.25 | 0.46 | 0.63 | 0.77 | 1.19 | 6598 | 882 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PVN | 20494 | 2024-03-18 | 2019-07-21 | 4.07 | 4.15 | — | 4.1 | 0.006 | 1.33 | 0.0 | 0.06 | 12.87 | 0.01 | 2.256 | 4.31 | 1.23 | 14.2 | 85.3 | 0.5 | -6.84 | 0.68 | 0.80 | — | 4.1 | 0.003 | 0.84 | 0.0 | 0.04 | 13.93 | 0.00 | 2.201 | 10.12 | 0.00 | 13.3 | 86.6 | 0.2 | -2.00 | 0.97 | 0.69 | 0.80 | — | 20874 | 2576 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 7XQ1 | 33388 | 2024-03-10 | 2022-05-06 | 3.4 | 3.32 | 3.36 | 3.5 | 0.010 | 1.05 | 1.0 | 0.06 | 13.48 | 0.01 | 2.320 | 6.82 | 0.58 | 2.8 | 97.2 | 0.0 | -6.81 | 0.47 | 0.78 | 3.56 | 3.5 | 0.002 | 0.57 | 0.0 | 0.04 | 14.06 | 0.00 | 2.195 | 7.28 | 1.16 | 2.3 | 97.7 | 0.0 | 1.08 | 1.54 | 0.48 | 0.80 | 2.07 | 3302 | 400 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 6X3F | 22021 | 2024-03-14 | 2020-05-21 | 3.03 | 3.23 | — | 3.3 | 0.006 | 0.93 | 0.0 | 0.06 | 14.72 | 0.01 | 2.351 | 3.78 | 0.00 | 5.0 | 95.0 | 0.0 | -6.78 | 0.58 | 0.85 | 3.24 | 3.3 | 0.002 | 0.60 | 0.0 | 0.04 | 15.63 | 0.00 | 2.286 | 6.26 | 0.87 | 3.5 | 96.5 | 0.0 | -0.22 | 0.95 | 0.54 | 0.85 | 2.02 | 9366 | 1227 | 6 | 0 | 3 | 0 | 0 | logfile |
✔ | 6KiQ | 9997 | 2024-03-16 | 2019-07-19 | 3.62 | 3.66 | — | 3.8 | 0.035 | 3.74 | 145.0 | 0.27 | 19.81 | 0.04 | 2.201 | 12.20 | 14.75 | 18.6 | 70.7 | 10.7 | -6.77 | 0.58 | 0.71 | 1.68 | 3.5 | 0.004 | 0.80 | 0.0 | 0.04 | 17.66 | 0.01 | 1.970 | 12.46 | 4.68 | 12.1 | 87.3 | 0.6 | -2.78 | 1.14 | 0.63 | 0.75 | 1.04 | 15093 | 968 | 3 | 0 | 0 | 0 | 7444 | logfile |
✔ | 7XPZ | 33386 | 2024-03-10 | 2022-05-06 | 3.4 | 3.31 | 3.34 | 3.6 | 0.005 | 0.73 | 0.0 | 0.05 | 12.26 | 0.01 | 2.311 | 6.57 | 0.58 | 5.5 | 94.5 | 0.0 | -6.77 | 0.49 | 0.79 | 3.43 | 3.6 | 0.003 | 0.64 | 0.0 | 0.04 | 14.24 | 0.00 | 2.187 | 7.80 | 2.88 | 4.0 | 96.0 | 0.0 | -0.85 | 1.15 | 0.45 | 0.78 | 2.16 | 3227 | 402 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oFH | 20046 | 2024-03-15 | 2019-03-29 | 3.7 | 3.79 | — | 3.8 | 0.008 | 0.75 | 0.0 | 0.05 | 7.71 | 0.01 | 2.097 | 3.74 | 0.00 | 5.3 | 94.7 | 0.0 | -6.76 | 0.59 | 0.83 | 1.69 | 3.7 | 0.005 | 0.89 | 1.0 | 0.04 | 16.65 | 0.00 | 2.065 | 12.01 | 3.67 | 5.1 | 94.9 | 0.0 | 2.18 | 1.86 | 0.61 | 0.85 | 0.80 | 11628 | 1482 | 19 | 0 | 0 | 0 | 0 | logfile |
✔ | 8GMP | 40229 | 2024-03-16 | 2023-03-27 | 2.8 | 3.00 | 2.80 | 3.0 | 0.006 | 1.09 | 0.0 | 0.05 | 17.18 | 0.01 | 2.357 | 12.47 | 2.96 | 4.8 | 95.2 | 0.0 | -6.76 | 0.65 | 0.82 | 2.44 | 3.0 | 0.004 | 0.70 | 0.0 | 0.04 | 18.20 | 0.01 | 2.551 | 3.31 | 3.77 | 5.7 | 94.3 | 0.0 | -0.53 | 0.53 | 0.59 | 0.81 | 2.85 | 13656 | 1728 | 16 | 0 | 8 | 0 | 0 | logfile |
✔ | 7K4A | 22662 | 2024-03-18 | 2020-09-15 | 3.26 | 3.68 | — | 3.7 | 0.013 | 1.44 | 0.0 | 0.06 | 15.27 | 0.01 | 2.263 | 3.83 | 0.52 | 10.5 | 89.4 | 0.2 | -6.74 | 0.52 | 0.81 | 4.18 | 3.7 | 0.005 | 0.76 | 0.0 | 0.04 | 15.21 | 0.00 | 2.147 | 8.21 | 2.85 | 10.6 | 89.4 | 0.0 | -2.31 | 1.33 | 0.63 | 0.87 | 2.91 | 20825 | 2420 | 8 | 0 | 65 | 0 | 0 | logfile |
✔ | 7XQ0 | 33387 | 2024-03-10 | 2022-05-06 | 3.0 | 2.77 | 3.09 | 3.2 | 0.014 | 1.26 | 0.0 | 0.06 | 13.01 | 0.01 | 2.232 | 7.04 | 0.86 | 1.5 | 98.5 | 0.0 | -6.72 | 0.49 | 0.79 | 4.03 | 3.2 | 0.004 | 0.64 | 0.0 | 0.04 | 14.07 | 0.00 | 2.172 | 8.09 | 1.73 | 1.8 | 98.2 | 0.0 | 0.86 | 1.09 | 0.43 | 0.77 | 3.24 | 3320 | 402 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7D10 | 30542 | 2024-03-11 | 2020-09-12 | 3.52 | 3.70 | — | 3.7 | 0.007 | 1.05 | 0.0 | 0.06 | 10.87 | 0.01 | 2.249 | 4.93 | 0.00 | 8.9 | 90.6 | 0.5 | -6.70 | 0.65 | 0.83 | 3.73 | 3.7 | 0.003 | 0.63 | 0.0 | 0.04 | 14.05 | 0.00 | 2.190 | 8.38 | 3.87 | 7.0 | 93.0 | 0.0 | -1.70 | 1.20 | 0.63 | 0.83 | 2.68 | 6424 | 892 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 7V2W | 31669 | 2024-03-18 | 2021-08-10 | 3.2 | 3.43 | — | 3.4 | 0.006 | 1.08 | 0.0 | 0.05 | 15.89 | 0.01 | 2.276 | 2.96 | 0.24 | 7.1 | 92.9 | 0.1 | -6.70 | 0.74 | 0.82 | 2.09 | 3.4 | 0.004 | 0.66 | 0.0 | 0.04 | 17.24 | 0.00 | 2.141 | 6.20 | 2.07 | 6.9 | 93.1 | 0.0 | -1.65 | 0.63 | 0.75 | 0.83 | 1.44 | 21619 | 2655 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TUQ | 10594 | 2024-03-16 | 2020-01-08 | 3.9 | 4.52 | — | 4.0 | 0.009 | 1.01 | 0.0 | 0.05 | 11.22 | 0.00 | 2.191 | 8.45 | 3.12 | 0.0 | 100.0 | 0.0 | -6.69 | 0.68 | 0.88 | 0.54 | 4.0 | 0.002 | 0.69 | 0.0 | 0.04 | 12.51 | 0.00 | 2.355 | 10.50 | 0.56 | 0.1 | 99.9 | 0.0 | -0.40 | 1.66 | 0.69 | 0.88 | 0.84 | 16100 | 2300 | 50 | 0 | 0 | 0 | 0 | logfile |
✔ | 6HYD | 0308 | 2024-03-15 | 2018-10-19 | 3.9 | 4.01 | — | 4.0 | 0.004 | 0.85 | 0.0 | 0.05 | 9.33 | 0.01 | 2.319 | 2.63 | 0.24 | 5.7 | 94.0 | 0.3 | -6.69 | 0.74 | 0.77 | 2.59 | 3.9 | 0.004 | 0.69 | 0.0 | 0.04 | 14.74 | 0.00 | 2.155 | 5.43 | 3.61 | 6.4 | 93.4 | 0.2 | -1.27 | 1.74 | 0.76 | 0.79 | 1.67 | 12168 | 1543 | 1 | 0 | 31 | 0 | 0 | logfile |
✔ | 6S8G | 10121 | 2024-03-15 | 2019-07-10 | 3.5 | 3.70 | — | 3.7 | 0.010 | 1.32 | 0.0 | 0.06 | 18.45 | 0.01 | 2.294 | 5.75 | 3.86 | 14.7 | 85.2 | 0.1 | -6.67 | 0.67 | 0.82 | 1.81 | 3.7 | 0.003 | 0.76 | 0.0 | 0.04 | 17.79 | 0.00 | 2.148 | 9.28 | 2.62 | 10.9 | 89.1 | 0.0 | -2.70 | 1.22 | 0.65 | 0.81 | 1.59 | 7530 | 957 | 7 | 0 | 3 | 0 | 0 | logfile |
✔ | 5o3L | 3741 | 2024-03-15 | 2017-05-24 | 3.4 | 3.71 | 3.34 | 3.7 | 0.012 | 1.03 | 0.0 | 0.06 | 8.97 | 0.01 | 2.111 | 9.60 | 0.00 | 22.4 | 77.6 | 0.0 | -6.67 | 0.60 | 0.69 | 2.44 | 3.6 | 0.003 | 0.75 | 0.0 | 0.05 | 15.36 | 0.01 | 1.918 | 13.91 | 4.69 | 12.5 | 87.5 | 0.0 | -5.16 | 2.67 | 0.57 | 0.75 | 2.40 | 11360 | 730 | 10 | 0 | 0 | 0 | 5790 | logfile |