Table showing results for November 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XU2	33456	2022-11-29	2022-05-18	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	53175	3321	18	0	66	0	26205	logfile
✔	7XU1	33455	2022-11-29	2022-05-18	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	53077	3309	19	0	69	0	26160	logfile
✔	6MRT	9212	2022-11-29	2018-10-15	2.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	26868	3420	12	0	0	0	0	logfile
✔	6WiK	21684	2022-11-29	2020-04-10	3.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6077	859	3	0	0	0	0	logfile
✔	7D1T	30547	2022-11-29	2020-09-15	1.95	1.88	1.89	1.9	0.020	1.91	31.0	0.10	18.53	0.02	1.200	3.45	2.40	1.9	97.9	0.2	-0.93	0.77	0.85	6.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	52994	5312	108	0	196	2432	0	logfile
✔	3KTT	5148	2022-11-29	2009-11-25	4.0	2.33	—	4.5	0.020	2.86	20.0	0.20	15.20	0.01	1.652	180.45	7.82	6.3	89.4	4.3	-0.59	0.27	0.28	—	2.0	0.004	1.18	0.0	0.05	17.18	0.01	2.023	26.84	0.49	9.4	89.6	1.0	-2.22	1.72	0.31	0.41	—	3855	513	1	0	0	0	0	logfile
✔	7QWL	14188	2022-11-29	2022-01-25	3.47	3.11	2.99	3.5	0.012	2.27	14.0	0.13	13.78	0.01	2.501	4.15	1.06	11.3	88.2	0.5	-3.35	0.45	0.81	5.36	3.4	0.007	0.84	0.0	0.05	15.70	0.00	2.069	12.44	1.06	14.3	85.7	0.0	-3.21	2.77	0.40	0.83	4.61	3258	405	3	0	0	0	0	logfile
✔	7DA5	30623	2022-11-29	2020-10-14	3.3	3.66	—	3.8	0.008	1.21	10.0	0.09	16.47	0.01	1.673	16.17	10.06	9.1	90.6	0.3	-3.63	0.43	0.58	1.81	3.7	0.003	0.78	0.0	0.04	16.02	0.00	2.247	8.68	0.61	4.6	95.4	0.0	0.21	1.48	0.49	0.72	2.29	4013	591	2	0	0	0	0	logfile
✔	7QVC	14174	2022-11-29	2022-01-21	2.64	2.62	2.62	2.6	0.012	2.09	10.0	0.12	15.49	0.01	2.525	0.00	0.53	5.8	94.2	0.0	-2.45	0.43	0.86	7.41	2.6	0.005	0.75	0.0	0.06	17.90	0.00	2.135	8.46	3.70	5.3	94.7	0.0	-2.31	2.44	0.42	0.89	6.07	3255	405	3	0	0	0	0	logfile
✔	7CKo	30389	2022-11-29	2020-07-18	2.95	3.28	—	3.3	0.012	1.32	10.0	0.13	16.64	0.01	1.964	12.09	12.88	9.1	90.8	0.2	-2.69	0.47	0.62	2.15	3.3	0.003	0.82	0.0	0.04	16.33	0.01	2.244	8.81	3.99	4.1	95.9	0.0	-0.27	2.25	0.47	0.70	2.65	4029	591	3	0	1	0	0	logfile
✔	6VPS	21316	2022-11-29	2020-02-04	2.6	2.62	2.52	2.7	0.011	1.14	10.0	0.13	20.44	0.01	2.501	19.04	0.00	6.9	93.1	0.0	-3.61	0.49	0.90	6.11	2.7	0.004	0.53	0.0	0.03	20.06	0.00	2.403	4.27	0.98	6.9	93.1	0.0	-3.78	1.19	0.48	0.88	6.47	2736	279	9	0	0	0	0	logfile
✔	7QWG	14187	2022-11-29	2022-01-25	3.38	3.26	2.98	3.3	0.012	2.34	10.0	0.15	14.89	0.01	2.525	0.77	0.26	10.0	90.0	0.0	-3.26	0.41	0.82	4.16	3.3	0.005	0.78	0.0	0.05	17.03	0.00	2.189	10.29	0.79	12.8	87.2	0.0	-3.71	2.40	0.38	0.84	3.82	3258	405	3	0	0	0	0	logfile
✔	7QK2	14029	2022-11-29	2021-12-17	2.61	2.61	2.37	2.7	0.011	1.86	10.0	0.11	10.81	0.01	2.499	0.76	0.00	4.1	95.9	0.0	-1.51	0.37	0.86	6.04	2.7	0.003	0.65	0.0	0.05	17.08	0.00	2.113	4.99	2.96	2.7	97.3	0.0	-1.83	1.72	0.37	0.87	5.30	3246	426	6	0	0	0	0	logfile
✔	6LZ0	30020	2022-11-29	2020-02-16	3.3	4.24	—	4.2	0.008	1.17	10.0	0.09	15.05	0.01	2.126	17.56	5.25	11.1	88.7	0.2	-4.02	0.46	0.61	1.68	4.2	0.003	0.79	0.0	0.04	16.17	0.01	2.163	9.24	0.31	6.2	93.8	0.0	-0.24	1.27	0.41	0.67	1.61	4006	591	3	0	1	0	0	logfile
✔	6LYY	30019	2022-11-29	2020-02-16	3.2	3.40	—	3.9	0.010	1.16	9.0	0.10	13.41	0.01	2.152	14.72	0.90	8.3	91.7	0.0	-3.75	0.38	0.51	1.45	3.8	0.003	0.73	0.0	0.04	15.49	0.00	2.267	9.94	0.60	4.6	95.4	0.0	0.46	1.24	0.46	0.66	2.02	4104	597	3	0	1	0	0	logfile
✔	7QKZ	14058	2022-11-29	2021-12-19	2.65	2.79	2.28	3.2	0.013	2.86	9.0	0.34	18.75	0.02	2.498	0.59	0.00	9.9	90.1	0.0	-1.61	0.34	0.61	7.02	2.7	0.006	1.50	0.0	0.38	19.57	0.01	2.238	12.41	0.00	1.2	98.8	0.0	-0.68	5.09	0.34	0.64	6.83	1701	99	9	0	0	0	891	logfile
✘	7CKR	30391	2022-11-29	2020-07-18	3.0	3.32	—	3.4	0.009	1.22	9.0	0.09	17.22	0.01	1.896	18.48	11.04	8.0	91.9	0.2	-2.89	0.45	0.60	2.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4094	597	3	0	1	0	0	logfile
✔	7QL3	14062	2022-11-29	2021-12-19	3.32	3.47	3.01	3.5	0.011	2.01	8.0	0.11	12.27	0.01	2.489	0.00	0.00	7.7	92.3	0.0	-3.47	0.46	0.82	4.29	3.5	0.005	0.84	0.0	0.05	13.70	0.01	2.098	6.50	0.00	4.3	95.7	0.0	-2.94	1.15	0.43	0.84	4.76	3246	426	6	0	0	0	0	logfile
✔	5Lii	4053	2022-11-29	2016-07-14	3.8	2.99	—	3.9	0.015	2.41	6.0	0.14	12.69	0.01	1.855	43.00	1.41	16.9	81.9	1.2	-6.10	0.55	0.70	3.46	4.0	0.003	0.91	0.0	0.04	15.81	0.01	2.277	10.79	1.41	12.8	86.5	0.7	-3.88	0.95	0.55	0.65	1.14	3098	433	1	0	0	0	0	logfile
✔	7M7B	23709	2022-11-29	2021-03-27	2.95	3.73	2.93	3.1	0.012	1.87	5.0	0.11	13.09	0.02	2.512	0.31	0.00	3.5	96.5	0.0	-0.73	0.62	0.86	4.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4898	635	4	0	2	0	0	logfile

• ← previous
• Page 3 of 23
• next →