Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6U6i	20666	2023-02-28	2019-08-29	3.12	3.43	—	3.4	0.006	0.45	0.0	0.07	11.24	0.00	2.029	6.12	0.00	7.6	92.4	0.0	-3.59	0.80	0.80	4.39	3.3	0.003	0.47	0.0	0.04	13.04	0.00	2.092	5.94	0.09	5.0	95.0	0.0	-0.18	0.51	0.81	0.83	4.16	21701	1496	9	0	11	0	10337	logfile
✔	7WE9	32443	2023-02-28	2021-12-23	3.6	3.89	—	3.8	0.004	0.65	1.0	0.05	14.22	0.00	2.118	12.27	0.17	8.2	91.7	0.1	-2.16	0.76	0.73	1.62	3.7	0.005	0.68	0.0	0.05	15.81	0.00	2.066	13.55	0.41	9.0	90.9	0.1	-2.16	1.14	0.77	0.74	1.01	32043	3987	32	0	72	0	0	logfile
✔	7YQY	34039	2023-02-28	2022-08-08	3.74	4.03	3.84	3.9	0.003	0.60	0.0	0.06	14.10	0.01	1.925	10.62	0.18	9.0	90.9	0.1	-2.25	0.80	0.81	1.73	3.9	0.006	0.71	0.0	0.05	15.58	0.00	2.091	13.72	0.41	11.0	88.9	0.0	-2.00	1.16	0.81	0.82	1.54	31983	3984	25	0	75	0	0	logfile
✔	7PTR	13634	2023-02-28	2021-09-27	3.46	4.28	3.39	3.8	0.002	0.45	0.0	0.04	9.81	0.00	2.195	6.90	0.00	3.0	97.0	0.0	-0.08	0.75	0.80	1.24	3.8	0.005	0.60	0.0	0.04	12.93	0.00	2.094	12.89	0.25	5.7	94.3	0.0	-1.30	0.49	0.76	0.83	1.19	31704	4350	12	0	36	0	0	logfile
✔	6MHo	9115	2023-02-28	2018-09-18	3.4	3.50	3.41	3.5	0.005	0.72	0.0	0.04	7.36	0.00	2.108	2.84	0.00	2.7	97.3	0.0	-2.41	0.66	0.76	3.45	3.4	0.003	0.55	0.0	0.03	12.70	0.00	2.003	6.04	0.14	4.5	95.5	0.0	0.98	2.46	0.68	0.81	3.70	32224	2404	4	0	0	0	15184	logfile
✔	7UAP	26429	2023-02-28	2022-03-13	2.8	2.98	2.85	3.0	0.007	1.25	12.0	0.07	13.61	0.01	2.041	19.84	0.29	7.1	92.4	0.6	-2.28	0.64	0.65	1.45	3.0	0.004	0.79	0.0	0.05	16.11	0.00	2.097	13.13	3.25	7.4	92.4	0.2	-1.50	1.91	0.67	0.77	1.92	31657	3957	27	0	59	0	0	logfile
✔	6oUL	20203	2023-02-28	2019-05-04	3.4	3.56	—	3.6	0.015	1.19	0.0	0.06	14.87	0.01	2.011	34.20	0.31	12.2	87.6	0.3	-4.17	0.68	0.79	2.67	3.6	0.003	0.65	0.0	0.04	17.69	0.00	2.092	10.70	0.37	6.0	93.9	0.1	-0.55	1.97	0.68	0.83	1.24	31927	3751	12	117	6	0	0	logfile
✘	8DDV	27343	2023-02-28	2022-06-19	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32230	3872	12	0	82	0	0	logfile
✘	8DDT	27341	2023-02-28	2022-06-18	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32229	3872	12	0	81	0	0	logfile
✘	5Y88	6817	2023-02-28	2017-08-20	3.46	3.56	—	3.5	0.011	1.45	25.0	0.11	15.50	0.01	1.112	25.55	5.35	6.2	92.6	1.2	-2.93	0.54	0.64	1.91	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72347	9113	50	337	14	0	0	logfile
✘	7LX0	23563	2023-02-28	2021-03-02	2.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72462	6699	60	0	447	0	0	logfile
✔	7N8Y	24249	2023-02-28	2021-06-16	3.65	3.83	—	3.8	0.005	0.98	0.0	0.06	14.98	0.01	2.293	8.21	0.69	8.9	90.9	0.3	-5.05	0.70	0.73	1.55	3.8	0.003	0.67	0.0	0.04	16.22	0.00	1.997	11.09	0.46	9.4	90.6	0.0	-2.57	0.60	0.70	0.75	1.16	16162	2074	4	0	0	0	0	logfile
✔	7RW2	24708	2023-02-28	2021-08-19	3.5	3.76	3.53	3.8	0.005	0.95	9.0	0.07	13.38	0.01	2.254	6.35	0.03	3.6	96.4	0.0	-1.51	0.71	0.70	1.71	3.7	0.004	0.68	0.0	0.05	15.60	0.00	2.171	11.41	0.41	5.0	95.0	0.0	-1.12	1.29	0.74	0.76	1.70	31614	3951	18	0	60	0	0	logfile
✔	7UPL	26669	2023-02-28	2022-04-15	4.1	4.41	4.14	4.2	0.004	0.65	0.0	0.05	13.58	0.00	2.086	7.13	0.00	6.4	93.6	0.0	-1.29	0.78	0.72	—	4.2	0.004	0.62	0.0	0.05	13.64	0.00	2.091	7.62	0.00	6.3	93.7	0.0	-1.19	0.56	0.82	0.81	—	32145	4031	23	0	54	0	0	logfile
✔	6PoF	20414	2023-02-28	2019-07-03	4.3	4.41	—	4.3	0.006	0.95	0.0	0.06	14.30	0.01	2.196	6.57	0.39	6.6	93.3	0.1	-4.95	0.76	0.67	—	4.3	0.003	0.71	0.0	0.05	13.70	0.00	2.075	13.73	0.36	6.6	93.3	0.1	-1.85	0.73	0.76	0.68	—	31624	4084	4	0	0	0	0	logfile
✔	7VVU	32148	2023-02-28	2021-11-09	3.4	4.41	—	3.4	0.006	0.75	0.0	0.05	24.83	0.00	2.216	8.78	0.31	1.5	98.5	0.0	1.82	0.88	0.80	1.79	3.4	0.004	0.61	0.0	0.03	25.68	0.00	2.152	11.55	0.08	2.4	97.6	0.0	2.33	1.29	0.90	0.84	1.55	19374	1466	16	359	1	0	0	logfile
✔	6U9o	20701	2023-02-28	2019-09-09	3.36	3.10	3.35	3.8	0.018	1.66	0.0	0.07	17.19	0.01	2.177	7.30	8.31	7.3	92.7	0.0	-4.12	0.59	0.79	2.41	3.7	0.004	0.80	0.0	0.05	17.59	0.00	2.159	17.84	0.98	7.5	92.5	0.0	-1.10	0.71	0.60	0.80	1.61	31792	4016	24	0	40	0	0	logfile
✔	6UA4	20705	2023-02-28	2019-09-10	3.65	3.84	3.40	3.8	0.017	1.57	0.0	0.07	15.56	0.01	2.226	7.04	2.60	7.8	92.2	0.0	-4.26	0.62	0.82	2.42	3.8	0.004	0.87	0.0	0.05	17.14	0.00	2.098	18.51	0.89	6.9	93.1	0.0	-1.88	1.64	0.62	0.81	1.55	31726	4016	24	0	38	0	0	logfile
✔	7TMP	25998	2023-02-28	2022-01-19	3.3	3.47	—	3.4	0.004	0.54	0.0	0.04	12.38	0.00	1.989	8.91	0.38	3.5	96.5	0.1	1.23	0.78	0.84	3.41	3.4	0.003	0.54	0.0	0.04	14.07	0.00	1.940	8.56	0.29	2.9	97.1	0.0	1.21	0.28	0.79	0.86	2.88	32105	4805	16	0	2	0	0	logfile
✔	7TMQ	25999	2023-02-28	2022-01-19	3.3	3.42	—	3.4	0.004	0.57	2.0	0.04	12.67	0.00	2.026	9.95	0.38	2.7	97.3	0.0	1.28	0.77	0.83	3.33	3.4	0.004	0.54	0.0	0.04	13.96	0.00	1.947	9.19	0.38	2.9	97.1	0.0	1.25	0.27	0.79	0.86	2.79	31642	4736	16	0	2	0	0	logfile

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