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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7UTH | 26770 | 2023-11-22 | 2022-04-26 | 3.9 | 4.02 | — | 4.0 | 0.006 | 0.98 | 1.0 | 0.05 | 18.37 | 0.01 | 2.095 | 4.45 | 0.72 | 5.3 | 94.5 | 0.2 | -0.70 | 0.46 | 0.67 | 0.95 | 4.0 | 0.003 | 0.57 | 1.0 | 0.03 | 18.50 | 0.00 | 2.002 | 11.40 | 0.53 | 4.7 | 95.1 | 0.1 | 0.87 | 1.74 | 0.51 | 0.71 | 0.79 | 36590 | 2242 | 2 | 0 | 0 | 0 | 18572 | logfile |
✔ | 7C2L | 30276 | 2023-11-22 | 2020-05-08 | 3.1 | 3.25 | — | 3.1 | 0.011 | 1.24 | 0.0 | 0.09 | 16.64 | 0.01 | 1.905 | 38.60 | 6.37 | 13.2 | 82.4 | 4.4 | -4.85 | 0.67 | 0.78 | 2.05 | 3.1 | 0.004 | 0.80 | 0.0 | 0.05 | 16.75 | 0.00 | 2.069 | 10.04 | 0.41 | 9.3 | 90.2 | 0.5 | -1.95 | 2.04 | 0.71 | 0.85 | 1.80 | 35988 | 4479 | 41 | 0 | 89 | 0 | 0 | logfile |
✘ | 7SCB | 25032 | 2023-11-22 | 2021-09-27 | 2.5 | 3.49 | 2.56 | 3.0 | 0.007 | 1.51 | 3.0 | 0.08 | 17.27 | 0.02 | 2.465 | 3.44 | 2.69 | 3.6 | 96.2 | 0.2 | -4.74 | 0.88 | 0.84 | 1.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37229 | 4743 | 54 | 0 | 25 | 0 | 0 | logfile |
✔ | 6WJ5 | 21688 | 2023-11-22 | 2020-04-11 | 3.6 | 3.81 | — | 3.8 | 0.012 | 1.84 | 4.0 | 0.10 | 13.33 | 0.01 | 2.369 | 0.28 | 0.05 | 3.8 | 95.7 | 0.5 | -2.50 | 0.51 | 0.70 | 3.53 | 3.8 | 0.004 | 0.60 | 0.0 | 0.04 | 16.24 | 0.00 | 2.011 | 6.97 | 0.26 | 3.5 | 96.5 | 0.0 | 0.84 | 1.46 | 0.59 | 0.78 | 2.62 | 36320 | 2248 | 8 | 0 | 4 | 0 | 18268 | logfile |
✔ | 6X2N | 22012 | 2023-11-22 | 2020-05-20 | 3.9 | 4.07 | — | 3.9 | 0.009 | 1.21 | 1.0 | 0.07 | 17.28 | 0.01 | 2.024 | 10.33 | 0.28 | 8.2 | 91.6 | 0.3 | -2.89 | 0.76 | 0.77 | 0.56 | 3.9 | 0.003 | 0.71 | 0.0 | 0.04 | 18.25 | 0.00 | 2.007 | 15.35 | 0.30 | 7.0 | 93.0 | 0.0 | -1.11 | 1.89 | 0.76 | 0.77 | 0.40 | 36079 | 4316 | 11 | 113 | 4 | 0 | 0 | logfile |
✔ | 7UBN | 26439 | 2023-11-22 | 2022-03-15 | 3.36 | 3.58 | 3.49 | 3.4 | 0.006 | 0.86 | 0.0 | 0.05 | 18.75 | 0.01 | 2.088 | 7.39 | 5.70 | 5.2 | 94.8 | 0.0 | -3.81 | 0.88 | 0.86 | 1.96 | 3.4 | 0.005 | 0.66 | 0.0 | 0.04 | 18.60 | 0.00 | 1.907 | 12.84 | 0.20 | 4.9 | 95.1 | 0.0 | -0.44 | 1.14 | 0.89 | 0.87 | 1.53 | 35069 | 4165 | 13 | 116 | 4 | 0 | 0 | logfile |
✔ | 7ZR7 | 14885 | 2023-11-22 | 2022-05-03 | 3.7 | 4.34 | 3.77 | 3.8 | 0.004 | 0.54 | 0.0 | 0.05 | 9.86 | 0.00 | 2.034 | 6.13 | 0.75 | 3.7 | 96.3 | 0.0 | -0.63 | 0.85 | 0.79 | 1.17 | 3.8 | 0.003 | 0.60 | 0.0 | 0.04 | 12.86 | 0.00 | 2.020 | 11.35 | 0.12 | 3.2 | 96.7 | 0.0 | 0.34 | 0.77 | 0.86 | 0.82 | 1.14 | 30764 | 3878 | 24 | 0 | 54 | 0 | 0 | logfile |
✔ | 6X4Y | 22044 | 2023-11-22 | 2020-05-24 | 3.6 | 3.82 | — | 3.7 | 0.006 | 0.96 | 0.0 | 0.06 | 16.62 | 0.01 | 1.919 | 9.59 | 0.28 | 8.1 | 91.6 | 0.3 | -2.60 | 0.77 | 0.82 | 1.64 | 3.7 | 0.004 | 0.66 | 0.0 | 0.04 | 17.85 | 0.00 | 1.931 | 13.42 | 0.55 | 7.5 | 92.4 | 0.1 | -1.25 | 0.39 | 0.77 | 0.83 | 1.27 | 36088 | 4316 | 11 | 113 | 5 | 0 | 0 | logfile |
✔ | 7FER | 31561 | 2023-11-22 | 2021-07-21 | 3.4 | 3.82 | — | 4.1 | 0.015 | 1.25 | 0.0 | 0.07 | 14.27 | 0.01 | 2.088 | 12.13 | 2.03 | 8.6 | 90.3 | 1.0 | -5.31 | 0.67 | 0.80 | 2.34 | 3.9 | 0.003 | 0.78 | 1.0 | 0.09 | 16.14 | 0.00 | 2.042 | 10.96 | 0.31 | 7.8 | 92.0 | 0.2 | -1.41 | 1.51 | 0.70 | 0.85 | 1.50 | 36736 | 2436 | 28 | 0 | 14 | 0 | 18142 | logfile |
✔ | 6V8Z | 21112 | 2023-11-22 | 2019-12-12 | 2.9 | 2.91 | — | 3.0 | 0.009 | 1.33 | 9.0 | 0.07 | 10.05 | 0.01 | 2.185 | 3.67 | 0.70 | 7.5 | 91.9 | 0.6 | -3.63 | 0.62 | 0.63 | 2.19 | 2.9 | 0.004 | 0.84 | 0.0 | 0.05 | 16.16 | 0.01 | 1.989 | 13.83 | 3.78 | 9.3 | 90.5 | 0.3 | -2.33 | 1.41 | 0.66 | 0.70 | 1.98 | 35877 | 4416 | 60 | 0 | 120 | 0 | 0 | logfile |
✔ | 6X2F | 22006 | 2023-11-22 | 2020-05-20 | 4.0 | 4.17 | — | 4.0 | 0.008 | 1.20 | 0.0 | 0.06 | 16.78 | 0.01 | 2.054 | 12.29 | 0.25 | 7.8 | 91.9 | 0.4 | -2.72 | 0.75 | 0.73 | — | 4.0 | 0.004 | 0.71 | 0.0 | 0.04 | 18.05 | 0.00 | 1.968 | 20.18 | 0.55 | 7.2 | 92.8 | 0.0 | -1.25 | 1.40 | 0.75 | 0.75 | — | 36054 | 4316 | 11 | 113 | 4 | 0 | 0 | logfile |
✘ | 7Z18 | 14444 | 2023-11-22 | 2022-02-24 | 1.98 | 2.40 | 2.04 | 2.3 | 0.008 | 0.94 | 0.0 | 0.06 | 15.02 | 0.01 | 1.726 | 3.36 | 1.19 | 1.9 | 98.1 | 0.0 | 1.45 | 0.79 | 0.82 | 5.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37659 | 2432 | 18 | 0 | 10 | 2 | 18660 | logfile |
✔ | 6RR7 | 4986 | 2023-11-22 | 2019-05-17 | 3.01 | 3.03 | — | 3.0 | 0.010 | 0.85 | 0.0 | 0.05 | 15.06 | 0.01 | 1.252 | 3.20 | 0.00 | 5.1 | 94.9 | 0.0 | -3.62 | 0.77 | 0.81 | 3.57 | 3.0 | 0.002 | 0.51 | 0.0 | 0.04 | 16.28 | 0.00 | 2.014 | 4.88 | 0.05 | 3.9 | 96.1 | 0.0 | -0.44 | 3.32 | 0.77 | 0.83 | 3.08 | 36290 | 2197 | 6 | 30 | 1 | 0 | 18001 | logfile |
✘ | 7Z17 | 14443 | 2023-11-22 | 2022-02-24 | 2.57 | 2.96 | 2.68 | 2.9 | 0.005 | 0.53 | 0.0 | 0.04 | 10.98 | 0.00 | 1.726 | 6.80 | 0.84 | 2.9 | 97.1 | 0.0 | 1.01 | 0.72 | 0.77 | 3.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37592 | 2432 | 14 | 0 | 5 | 0 | 18669 | logfile |
✔ | 7TUB | 26131 | 2023-11-22 | 2022-02-02 | 3.6 | 3.87 | — | 3.7 | 0.005 | 0.70 | 2.0 | 0.04 | 16.00 | 0.00 | 1.797 | 5.45 | 0.49 | 4.0 | 95.9 | 0.1 | -0.97 | 0.66 | 0.86 | 2.16 | 3.7 | 0.004 | 0.63 | 0.0 | 0.04 | 16.37 | 0.00 | 1.615 | 6.19 | 0.13 | 4.0 | 96.0 | 0.0 | 0.47 | 0.33 | 0.65 | 0.85 | 1.53 | 35877 | 4650 | 25 | 0 | 24 | 8 | 0 | logfile |
✘ | 7oo3 | 13004 | 2023-11-22 | 2021-05-26 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -1.32 | — | — | 4.02 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 95846 | 6020 | 26 | 92 | 44 | 0 | 46456 | logfile |
✔ | 7oiK | 12931 | 2023-11-22 | 2021-05-11 | 3.5 | 4.50 | 3.60 | 3.1 | 0.006 | 1.31 | 11.0 | 0.07 | 12.06 | 0.01 | 2.148 | 5.35 | 0.02 | 8.9 | 90.9 | 0.2 | -3.74 | 0.88 | 0.78 | 0.84 | 3.1 | 0.003 | 0.75 | 0.0 | 0.04 | 13.72 | 0.00 | 1.946 | 12.54 | 0.15 | 7.4 | 92.6 | 0.0 | -0.10 | 1.60 | 0.88 | 0.78 | 0.78 | 36779 | 4579 | 3 | 0 | 4 | 0 | 0 | logfile |
✘ | 8BE0 | 15996 | 2023-11-22 | 2022-10-20 | 2.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36361 | 2179 | 14 | 44 | 3 | 95 | 17924 | logfile |
✘ | 6WNR | 21855 | 2023-11-22 | 2020-04-23 | 3.3 | 3.61 | — | 3.4 | 0.005 | 0.96 | 1.0 | 0.06 | 14.34 | 0.01 | 1.869 | 2.24 | 1.44 | 2.8 | 97.2 | 0.0 | -1.29 | 0.77 | 0.85 | 2.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36934 | 4851 | 28 | 0 | 12 | 0 | 0 | logfile |
✘ | 6oQT | 20169 | 2023-11-22 | 2019-04-29 | 3.1 | 3.48 | — | 3.3 | 0.008 | 0.86 | 1.0 | 0.05 | 14.36 | 0.00 | 1.781 | 3.86 | 1.96 | 2.9 | 97.1 | 0.0 | -2.11 | 0.78 | 0.88 | 3.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36971 | 4851 | 28 | 0 | 12 | 0 | 0 | logfile |