Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UTH	26770	2023-11-22	2022-04-26	3.9	4.02	—	4.0	0.006	0.98	1.0	0.05	18.37	0.01	2.095	4.45	0.72	5.3	94.5	0.2	-0.70	0.46	0.67	0.95	4.0	0.003	0.57	1.0	0.03	18.50	0.00	2.002	11.40	0.53	4.7	95.1	0.1	0.87	1.74	0.51	0.71	0.79	36590	2242	2	0	0	0	18572	logfile
✔	7C2L	30276	2023-11-22	2020-05-08	3.1	3.25	—	3.1	0.011	1.24	0.0	0.09	16.64	0.01	1.905	38.60	6.37	13.2	82.4	4.4	-4.85	0.67	0.78	2.05	3.1	0.004	0.80	0.0	0.05	16.75	0.00	2.069	10.04	0.41	9.3	90.2	0.5	-1.95	2.04	0.71	0.85	1.80	35988	4479	41	0	89	0	0	logfile
✘	7SCB	25032	2023-11-22	2021-09-27	2.5	3.49	2.56	3.0	0.007	1.51	3.0	0.08	17.27	0.02	2.465	3.44	2.69	3.6	96.2	0.2	-4.74	0.88	0.84	1.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	37229	4743	54	0	25	0	0	logfile
✔	6WJ5	21688	2023-11-22	2020-04-11	3.6	3.81	—	3.8	0.012	1.84	4.0	0.10	13.33	0.01	2.369	0.28	0.05	3.8	95.7	0.5	-2.50	0.51	0.70	3.53	3.8	0.004	0.60	0.0	0.04	16.24	0.00	2.011	6.97	0.26	3.5	96.5	0.0	0.84	1.46	0.59	0.78	2.62	36320	2248	8	0	4	0	18268	logfile
✔	6X2N	22012	2023-11-22	2020-05-20	3.9	4.07	—	3.9	0.009	1.21	1.0	0.07	17.28	0.01	2.024	10.33	0.28	8.2	91.6	0.3	-2.89	0.76	0.77	0.56	3.9	0.003	0.71	0.0	0.04	18.25	0.00	2.007	15.35	0.30	7.0	93.0	0.0	-1.11	1.89	0.76	0.77	0.40	36079	4316	11	113	4	0	0	logfile
✔	7UBN	26439	2023-11-22	2022-03-15	3.36	3.58	3.49	3.4	0.006	0.86	0.0	0.05	18.75	0.01	2.088	7.39	5.70	5.2	94.8	0.0	-3.81	0.88	0.86	1.96	3.4	0.005	0.66	0.0	0.04	18.60	0.00	1.907	12.84	0.20	4.9	95.1	0.0	-0.44	1.14	0.89	0.87	1.53	35069	4165	13	116	4	0	0	logfile
✔	7ZR7	14885	2023-11-22	2022-05-03	3.7	4.34	3.77	3.8	0.004	0.54	0.0	0.05	9.86	0.00	2.034	6.13	0.75	3.7	96.3	0.0	-0.63	0.85	0.79	1.17	3.8	0.003	0.60	0.0	0.04	12.86	0.00	2.020	11.35	0.12	3.2	96.7	0.0	0.34	0.77	0.86	0.82	1.14	30764	3878	24	0	54	0	0	logfile
✔	6X4Y	22044	2023-11-22	2020-05-24	3.6	3.82	—	3.7	0.006	0.96	0.0	0.06	16.62	0.01	1.919	9.59	0.28	8.1	91.6	0.3	-2.60	0.77	0.82	1.64	3.7	0.004	0.66	0.0	0.04	17.85	0.00	1.931	13.42	0.55	7.5	92.4	0.1	-1.25	0.39	0.77	0.83	1.27	36088	4316	11	113	5	0	0	logfile
✔	7FER	31561	2023-11-22	2021-07-21	3.4	3.82	—	4.1	0.015	1.25	0.0	0.07	14.27	0.01	2.088	12.13	2.03	8.6	90.3	1.0	-5.31	0.67	0.80	2.34	3.9	0.003	0.78	1.0	0.09	16.14	0.00	2.042	10.96	0.31	7.8	92.0	0.2	-1.41	1.51	0.70	0.85	1.50	36736	2436	28	0	14	0	18142	logfile
✔	6V8Z	21112	2023-11-22	2019-12-12	2.9	2.91	—	3.0	0.009	1.33	9.0	0.07	10.05	0.01	2.185	3.67	0.70	7.5	91.9	0.6	-3.63	0.62	0.63	2.19	2.9	0.004	0.84	0.0	0.05	16.16	0.01	1.989	13.83	3.78	9.3	90.5	0.3	-2.33	1.41	0.66	0.70	1.98	35877	4416	60	0	120	0	0	logfile
✔	6X2F	22006	2023-11-22	2020-05-20	4.0	4.17	—	4.0	0.008	1.20	0.0	0.06	16.78	0.01	2.054	12.29	0.25	7.8	91.9	0.4	-2.72	0.75	0.73	—	4.0	0.004	0.71	0.0	0.04	18.05	0.00	1.968	20.18	0.55	7.2	92.8	0.0	-1.25	1.40	0.75	0.75	—	36054	4316	11	113	4	0	0	logfile
✘	7Z18	14444	2023-11-22	2022-02-24	1.98	2.40	2.04	2.3	0.008	0.94	0.0	0.06	15.02	0.01	1.726	3.36	1.19	1.9	98.1	0.0	1.45	0.79	0.82	5.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	37659	2432	18	0	10	2	18660	logfile
✔	6RR7	4986	2023-11-22	2019-05-17	3.01	3.03	—	3.0	0.010	0.85	0.0	0.05	15.06	0.01	1.252	3.20	0.00	5.1	94.9	0.0	-3.62	0.77	0.81	3.57	3.0	0.002	0.51	0.0	0.04	16.28	0.00	2.014	4.88	0.05	3.9	96.1	0.0	-0.44	3.32	0.77	0.83	3.08	36290	2197	6	30	1	0	18001	logfile
✘	7Z17	14443	2023-11-22	2022-02-24	2.57	2.96	2.68	2.9	0.005	0.53	0.0	0.04	10.98	0.00	1.726	6.80	0.84	2.9	97.1	0.0	1.01	0.72	0.77	3.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	37592	2432	14	0	5	0	18669	logfile
✔	7TUB	26131	2023-11-22	2022-02-02	3.6	3.87	—	3.7	0.005	0.70	2.0	0.04	16.00	0.00	1.797	5.45	0.49	4.0	95.9	0.1	-0.97	0.66	0.86	2.16	3.7	0.004	0.63	0.0	0.04	16.37	0.00	1.615	6.19	0.13	4.0	96.0	0.0	0.47	0.33	0.65	0.85	1.53	35877	4650	25	0	24	8	0	logfile
✘	7oo3	13004	2023-11-22	2021-05-26	2.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	-1.32	—	—	4.02	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	95846	6020	26	92	44	0	46456	logfile
✔	7oiK	12931	2023-11-22	2021-05-11	3.5	4.50	3.60	3.1	0.006	1.31	11.0	0.07	12.06	0.01	2.148	5.35	0.02	8.9	90.9	0.2	-3.74	0.88	0.78	0.84	3.1	0.003	0.75	0.0	0.04	13.72	0.00	1.946	12.54	0.15	7.4	92.6	0.0	-0.10	1.60	0.88	0.78	0.78	36779	4579	3	0	4	0	0	logfile
✘	8BE0	15996	2023-11-22	2022-10-20	2.34	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	36361	2179	14	44	3	95	17924	logfile
✘	6WNR	21855	2023-11-22	2020-04-23	3.3	3.61	—	3.4	0.005	0.96	1.0	0.06	14.34	0.01	1.869	2.24	1.44	2.8	97.2	0.0	-1.29	0.77	0.85	2.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	36934	4851	28	0	12	0	0	logfile
✘	6oQT	20169	2023-11-22	2019-04-29	3.1	3.48	—	3.3	0.008	0.86	1.0	0.05	14.36	0.00	1.781	3.86	1.96	2.9	97.1	0.0	-2.11	0.78	0.88	3.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	36971	4851	28	0	12	0	0	logfile

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