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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8AJL | 15482 | 2024-03-26 | 2022-07-28 | 2.77 | 3.00 | 2.84 | 3.0 | 0.006 | 0.73 | 0.0 | 0.05 | 12.92 | 0.01 | 1.956 | 1.79 | 0.03 | 4.7 | 95.3 | 0.0 | -0.64 | 0.47 | 0.65 | 4.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 51875 | 3327 | 15 | 0 | 63 | 0 | 25130 | logfile |
✘ | 8iPD | 35639 | 2024-03-26 | 2023-03-14 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 149878 | 8564 | 53 | 3756 | 2 | 0 | 0 | logfile |
✔ | 6WDB | 21630 | 2024-03-26 | 2020-03-31 | 4.0 | 4.30 | 5.11 | 4.1 | 0.006 | 0.99 | 0.0 | 0.08 | 21.96 | 0.01 | 2.211 | 11.44 | 0.77 | 11.9 | 86.2 | 1.9 | -4.97 | 0.78 | 0.72 | — | 4.1 | 0.004 | 0.81 | 0.0 | 0.04 | 24.35 | 0.01 | 2.000 | 33.03 | 5.89 | 12.2 | 87.7 | 0.2 | -3.28 | 0.91 | 0.81 | 0.77 | — | 150149 | 6024 | 59 | 4807 | 0 | 0 | 0 | logfile |
✔ | 8BH7 | 16049 | 2024-03-26 | 2022-10-30 | 4.23 | 9.20 | — | 4.5 | 0.005 | 0.83 | 0.0 | 0.07 | 25.73 | 0.01 | 2.136 | 63.21 | 0.43 | 7.8 | 92.2 | 0.0 | -3.39 | 0.91 | 0.80 | — | 4.5 | 0.004 | 0.80 | 0.0 | 0.04 | 25.35 | 0.01 | 1.941 | 58.93 | 0.05 | 11.7 | 88.3 | 0.0 | -2.72 | 1.32 | 0.92 | 0.82 | — | 52615 | 2464 | 21 | 1541 | 0 | 0 | 0 | logfile |
✔ | 8Q6o | 18191 | 2024-03-26 | 2023-08-14 | 3.14 | 3.54 | 3.31 | 3.5 | 0.003 | 0.49 | 0.0 | 0.04 | 13.86 | 0.00 | 2.232 | 4.96 | 0.03 | 2.4 | 97.6 | 0.0 | 0.77 | 0.66 | 0.81 | 2.60 | 3.5 | 0.003 | 0.58 | 0.0 | 0.04 | 15.97 | 0.00 | 2.121 | 6.63 | 1.31 | 3.1 | 96.9 | 0.0 | 1.07 | 0.78 | 0.70 | 0.85 | 2.44 | 51983 | 6454 | 34 | 0 | 10 | 0 | 0 | logfile |
✔ | 6GSi | 0056 | 2024-03-26 | 2018-06-14 | 3.75 | 4.09 | — | 4.0 | 0.011 | 0.92 | 0.0 | 0.06 | 9.92 | 0.01 | 1.076 | 9.23 | 0.71 | 15.3 | 84.5 | 0.2 | -5.00 | 0.55 | 0.81 | 2.93 | 4.0 | 0.003 | 0.64 | 0.0 | 0.04 | 13.34 | 0.00 | 1.865 | 11.53 | 1.50 | 9.4 | 90.5 | 0.1 | -2.58 | 0.94 | 0.57 | 0.84 | 2.80 | 150378 | 9831 | 48 | 0 | 12 | 0 | 74247 | logfile |
✔ | 6WDM | 21641 | 2024-03-26 | 2020-03-31 | 3.6 | 3.93 | 3.85 | 3.8 | 0.006 | 0.96 | 0.0 | 0.08 | 21.96 | 0.01 | 1.315 | 8.41 | 0.61 | 10.3 | 88.0 | 1.7 | -4.77 | 0.82 | 0.83 | 1.11 | 3.8 | 0.007 | 0.88 | 4.0 | 0.04 | 23.52 | 0.01 | 1.820 | 27.88 | 7.82 | 11.8 | 88.0 | 0.2 | -2.57 | 0.68 | 0.84 | 0.85 | 1.08 | 150220 | 6025 | 58 | 4810 | 0 | 0 | 0 | logfile |
✔ | 8FL7 | 29269 | 2024-03-26 | 2022-12-21 | 2.55 | 2.80 | 2.68 | 2.9 | 0.007 | 0.74 | 0.0 | 0.04 | 21.70 | 0.03 | 1.958 | 2.09 | 0.01 | 1.3 | 98.7 | 0.0 | 0.88 | 0.86 | 0.86 | 4.06 | 2.9 | 0.003 | 0.71 | 1.0 | 0.04 | 22.17 | 0.01 | 1.837 | 5.88 | 1.94 | 1.9 | 98.1 | 0.0 | 1.13 | 0.43 | 0.85 | 0.87 | 3.66 | 149506 | 8711 | 69 | 3684 | 95 | 0 | 0 | logfile |
✔ | 7SS9 | 25405 | 2024-03-26 | 2021-11-10 | 3.9 | 4.09 | 4.66 | 4.0 | 0.010 | 1.07 | 0.0 | 0.09 | 23.53 | 0.01 | 2.130 | 12.90 | 1.63 | 11.7 | 87.8 | 0.5 | -4.79 | 0.76 | 0.73 | 0.63 | 4.0 | 0.006 | 0.89 | 0.0 | 0.04 | 24.41 | 0.01 | 1.947 | 31.09 | 6.57 | 13.5 | 86.3 | 0.3 | -3.18 | 0.65 | 0.77 | 0.73 | 0.59 | 149808 | 6171 | 57 | 4736 | 0 | 0 | 0 | logfile |
✔ | 7UNW | 26635 | 2024-03-26 | 2022-04-11 | 2.6 | 3.21 | 2.65 | 3.0 | 0.006 | 0.68 | 0.0 | 0.04 | 22.87 | 0.02 | 1.876 | 6.31 | 0.02 | 6.8 | 92.8 | 0.3 | -1.25 | 0.90 | 0.88 | 3.37 | 3.0 | 0.004 | 0.69 | 0.0 | 0.04 | 22.83 | 0.01 | 1.742 | 8.13 | 2.91 | 6.6 | 93.1 | 0.3 | -0.51 | 0.91 | 0.88 | 0.93 | 2.91 | 149945 | 6534 | 85 | 4605 | 799 | 352 | 0 | logfile |
✔ | 7UNV | 26634 | 2024-03-26 | 2022-04-11 | 2.7 | 3.21 | 2.68 | 3.0 | 0.005 | 0.62 | 0.0 | 0.04 | 22.91 | 0.02 | 1.751 | 6.95 | 0.16 | 6.6 | 93.0 | 0.4 | -1.44 | 0.90 | 0.89 | 3.23 | 3.0 | 0.003 | 0.69 | 0.0 | 0.04 | 22.89 | 0.01 | 1.799 | 8.30 | 2.72 | 6.8 | 92.9 | 0.3 | -0.70 | 0.37 | 0.87 | 0.92 | 2.84 | 149599 | 6534 | 85 | 4605 | 598 | 295 | 0 | logfile |
✘ | 8iR1 | 35672 | 2024-03-26 | 2023-03-17 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 150033 | 8866 | 54 | 3644 | 2 | 0 | 0 | logfile |
✔ | 8VK3 | 43299 | 2024-03-26 | 2024-01-08 | 3.21 | 3.09 | — | 3.0 | 0.003 | 0.72 | 0.0 | 0.04 | 14.00 | 0.00 | 1.591 | 6.88 | 0.05 | 2.2 | 97.8 | 0.0 | 1.48 | 0.87 | 0.86 | 3.39 | 3.0 | 0.005 | 0.67 | 0.0 | 0.04 | 15.59 | 0.00 | 2.072 | 8.57 | 1.16 | 2.5 | 97.5 | 0.0 | 1.46 | 0.96 | 0.90 | 0.90 | 3.32 | 148852 | 18672 | 20 | 0 | 12 | 0 | 0 | logfile |
✔ | 6WDC | 21631 | 2024-03-26 | 2020-03-31 | 4.2 | 4.07 | 4.55 | 3.9 | 0.006 | 1.01 | 0.0 | 0.08 | 22.00 | 0.01 | 2.262 | 11.85 | 1.14 | 13.3 | 84.6 | 2.1 | -5.10 | 0.77 | 0.73 | — | 3.9 | 0.005 | 0.83 | 0.0 | 0.04 | 23.70 | 0.01 | 1.973 | 31.36 | 0.08 | 13.4 | 86.5 | 0.1 | -3.35 | 1.58 | 0.80 | 0.77 | — | 150149 | 6024 | 59 | 4807 | 0 | 0 | 0 | logfile |
✔ | 7K50 | 22669 | 2024-03-26 | 2020-09-16 | 3.4 | 3.90 | — | 3.3 | 0.010 | 1.13 | 0.0 | 0.09 | 22.61 | 0.01 | 2.194 | 19.55 | 1.75 | 13.3 | 85.0 | 1.7 | -4.02 | 0.85 | 0.84 | 1.47 | 3.3 | 0.004 | 0.67 | 1.0 | 0.04 | 23.34 | 0.00 | 1.969 | 16.91 | 5.99 | 12.3 | 87.5 | 0.3 | -2.35 | 1.17 | 0.86 | 0.86 | 0.94 | 149700 | 5945 | 60 | 4811 | 0 | 0 | 0 | logfile |
✔ | 6WDK | 21639 | 2024-03-26 | 2020-03-31 | 3.6 | 3.94 | 3.93 | 3.8 | 0.006 | 0.95 | 0.0 | 0.08 | 21.91 | 0.01 | 1.311 | 8.08 | 0.51 | 11.0 | 87.2 | 1.8 | -4.81 | 0.82 | 0.82 | 1.17 | 3.8 | 0.004 | 0.70 | 0.0 | 0.04 | 23.36 | 0.01 | 2.024 | 20.66 | 6.19 | 10.1 | 89.7 | 0.2 | -2.42 | 1.52 | 0.83 | 0.83 | 1.02 | 150222 | 6025 | 60 | 4810 | 0 | 0 | 0 | logfile |
✔ | 8H7G | 34520 | 2024-03-26 | 2022-10-20 | 3.7 | 3.18 | 3.58 | 3.3 | 0.002 | 0.57 | 0.0 | 0.04 | 12.37 | 0.00 | 2.182 | 5.83 | 0.00 | 5.3 | 94.6 | 0.0 | -1.27 | 0.60 | 0.60 | 0.67 | 3.3 | 0.003 | 0.64 | 0.0 | 0.04 | 15.37 | 0.00 | 2.096 | 8.12 | 1.48 | 6.6 | 93.4 | 0.0 | -0.26 | 1.44 | 0.63 | 0.67 | 0.73 | 52609 | 6574 | 14 | 0 | 19 | 0 | 0 | logfile |
✔ | 6WDJ | 21638 | 2024-03-26 | 2020-03-31 | 3.7 | 4.11 | 4.20 | 4.0 | 0.006 | 0.96 | 0.0 | 0.08 | 21.93 | 0.01 | 2.162 | 8.59 | 0.41 | 11.0 | 87.3 | 1.7 | -4.77 | 0.81 | 0.81 | 1.03 | 4.0 | 0.004 | 0.69 | 0.0 | 0.04 | 23.43 | 0.01 | 2.045 | 22.79 | 6.81 | 10.1 | 89.8 | 0.1 | -2.48 | 1.51 | 0.83 | 0.83 | 0.62 | 150211 | 6024 | 59 | 4810 | 0 | 0 | 0 | logfile |
✔ | 6WDD | 21632 | 2024-03-26 | 2020-03-31 | 3.2 | 3.43 | 3.52 | 3.3 | 0.006 | 0.92 | 0.0 | 0.08 | 22.16 | 0.01 | 1.327 | 10.51 | 0.49 | 10.6 | 87.7 | 1.7 | -4.87 | 0.79 | 0.82 | 1.59 | 3.3 | 0.005 | 0.70 | 0.0 | 0.04 | 23.19 | 0.01 | 2.032 | 17.22 | 5.89 | 9.7 | 90.1 | 0.2 | -2.32 | 0.59 | 0.81 | 0.85 | 1.23 | 150222 | 6025 | 60 | 4810 | 0 | 0 | 0 | logfile |
✔ | 7XU6 | 33460 | 2024-03-26 | 2022-05-18 | 2.9 | 3.40 | 2.92 | 3.2 | 0.012 | 0.96 | 0.0 | 0.05 | 14.18 | 0.01 | 2.069 | 3.27 | 0.74 | 6.7 | 93.3 | 0.0 | -1.74 | 0.80 | 0.78 | 2.99 | 3.2 | 0.003 | 0.55 | 0.0 | 0.04 | 13.85 | 0.00 | 1.936 | 8.27 | 0.67 | 5.1 | 94.9 | 0.0 | -0.79 | 0.45 | 0.82 | 0.81 | 3.06 | 51464 | 3267 | 18 | 0 | 66 | 0 | 24902 | logfile |