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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6U6i | 20666 | 2023-02-28 | 2019-08-29 | 3.12 | 3.43 | — | 3.4 | 0.006 | 0.45 | 0.0 | 0.07 | 11.24 | 0.00 | 2.029 | 6.12 | 0.00 | 7.6 | 92.4 | 0.0 | -3.59 | 0.80 | 0.80 | 4.39 | 3.3 | 0.003 | 0.47 | 0.0 | 0.04 | 13.04 | 0.00 | 2.092 | 5.94 | 0.09 | 5.0 | 95.0 | 0.0 | -0.18 | 0.51 | 0.81 | 0.83 | 4.16 | 21701 | 1496 | 9 | 0 | 11 | 0 | 10337 | logfile |
✔ | 7WE9 | 32443 | 2023-02-28 | 2021-12-23 | 3.6 | 3.89 | — | 3.8 | 0.004 | 0.65 | 1.0 | 0.05 | 14.22 | 0.00 | 2.118 | 12.27 | 0.17 | 8.2 | 91.7 | 0.1 | -2.16 | 0.76 | 0.73 | 1.62 | 3.7 | 0.005 | 0.68 | 0.0 | 0.05 | 15.81 | 0.00 | 2.066 | 13.55 | 0.41 | 9.0 | 90.9 | 0.1 | -2.16 | 1.14 | 0.77 | 0.74 | 1.01 | 32043 | 3987 | 32 | 0 | 72 | 0 | 0 | logfile |
✔ | 7YQY | 34039 | 2023-02-28 | 2022-08-08 | 3.74 | 4.03 | 3.84 | 3.9 | 0.003 | 0.60 | 0.0 | 0.06 | 14.10 | 0.01 | 1.925 | 10.62 | 0.18 | 9.0 | 90.9 | 0.1 | -2.25 | 0.80 | 0.81 | 1.73 | 3.9 | 0.006 | 0.71 | 0.0 | 0.05 | 15.58 | 0.00 | 2.091 | 13.72 | 0.41 | 11.0 | 88.9 | 0.0 | -2.00 | 1.16 | 0.81 | 0.82 | 1.54 | 31983 | 3984 | 25 | 0 | 75 | 0 | 0 | logfile |
✔ | 7PTR | 13634 | 2023-02-28 | 2021-09-27 | 3.46 | 4.28 | 3.39 | 3.8 | 0.002 | 0.45 | 0.0 | 0.04 | 9.81 | 0.00 | 2.195 | 6.90 | 0.00 | 3.0 | 97.0 | 0.0 | -0.08 | 0.75 | 0.80 | 1.24 | 3.8 | 0.005 | 0.60 | 0.0 | 0.04 | 12.93 | 0.00 | 2.094 | 12.89 | 0.25 | 5.7 | 94.3 | 0.0 | -1.30 | 0.49 | 0.76 | 0.83 | 1.19 | 31704 | 4350 | 12 | 0 | 36 | 0 | 0 | logfile |
✔ | 6MHo | 9115 | 2023-02-28 | 2018-09-18 | 3.4 | 3.50 | 3.41 | 3.5 | 0.005 | 0.72 | 0.0 | 0.04 | 7.36 | 0.00 | 2.108 | 2.84 | 0.00 | 2.7 | 97.3 | 0.0 | -2.41 | 0.66 | 0.76 | 3.45 | 3.4 | 0.003 | 0.55 | 0.0 | 0.03 | 12.70 | 0.00 | 2.003 | 6.04 | 0.14 | 4.5 | 95.5 | 0.0 | 0.98 | 2.46 | 0.68 | 0.81 | 3.70 | 32224 | 2404 | 4 | 0 | 0 | 0 | 15184 | logfile |
✔ | 7UAP | 26429 | 2023-02-28 | 2022-03-13 | 2.8 | 2.98 | 2.85 | 3.0 | 0.007 | 1.25 | 12.0 | 0.07 | 13.61 | 0.01 | 2.041 | 19.84 | 0.29 | 7.1 | 92.4 | 0.6 | -2.28 | 0.64 | 0.65 | 1.45 | 3.0 | 0.004 | 0.79 | 0.0 | 0.05 | 16.11 | 0.00 | 2.097 | 13.13 | 3.25 | 7.4 | 92.4 | 0.2 | -1.50 | 1.91 | 0.67 | 0.77 | 1.92 | 31657 | 3957 | 27 | 0 | 59 | 0 | 0 | logfile |
✔ | 6oUL | 20203 | 2023-02-28 | 2019-05-04 | 3.4 | 3.56 | — | 3.6 | 0.015 | 1.19 | 0.0 | 0.06 | 14.87 | 0.01 | 2.011 | 34.20 | 0.31 | 12.2 | 87.6 | 0.3 | -4.17 | 0.68 | 0.79 | 2.67 | 3.6 | 0.003 | 0.65 | 0.0 | 0.04 | 17.69 | 0.00 | 2.092 | 10.70 | 0.37 | 6.0 | 93.9 | 0.1 | -0.55 | 1.97 | 0.68 | 0.83 | 1.24 | 31927 | 3751 | 12 | 117 | 6 | 0 | 0 | logfile |
✘ | 8DDV | 27343 | 2023-02-28 | 2022-06-19 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32230 | 3872 | 12 | 0 | 82 | 0 | 0 | logfile |
✘ | 8DDT | 27341 | 2023-02-28 | 2022-06-18 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32229 | 3872 | 12 | 0 | 81 | 0 | 0 | logfile |
✘ | 5Y88 | 6817 | 2023-02-28 | 2017-08-20 | 3.46 | 3.56 | — | 3.5 | 0.011 | 1.45 | 25.0 | 0.11 | 15.50 | 0.01 | 1.112 | 25.55 | 5.35 | 6.2 | 92.6 | 1.2 | -2.93 | 0.54 | 0.64 | 1.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72347 | 9113 | 50 | 337 | 14 | 0 | 0 | logfile |
✘ | 7LX0 | 23563 | 2023-02-28 | 2021-03-02 | 2.96 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72462 | 6699 | 60 | 0 | 447 | 0 | 0 | logfile |
✔ | 7N8Y | 24249 | 2023-02-28 | 2021-06-16 | 3.65 | 3.83 | — | 3.8 | 0.005 | 0.98 | 0.0 | 0.06 | 14.98 | 0.01 | 2.293 | 8.21 | 0.69 | 8.9 | 90.9 | 0.3 | -5.05 | 0.70 | 0.73 | 1.55 | 3.8 | 0.003 | 0.67 | 0.0 | 0.04 | 16.22 | 0.00 | 1.997 | 11.09 | 0.46 | 9.4 | 90.6 | 0.0 | -2.57 | 0.60 | 0.70 | 0.75 | 1.16 | 16162 | 2074 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RW2 | 24708 | 2023-02-28 | 2021-08-19 | 3.5 | 3.76 | 3.53 | 3.8 | 0.005 | 0.95 | 9.0 | 0.07 | 13.38 | 0.01 | 2.254 | 6.35 | 0.03 | 3.6 | 96.4 | 0.0 | -1.51 | 0.71 | 0.70 | 1.71 | 3.7 | 0.004 | 0.68 | 0.0 | 0.05 | 15.60 | 0.00 | 2.171 | 11.41 | 0.41 | 5.0 | 95.0 | 0.0 | -1.12 | 1.29 | 0.74 | 0.76 | 1.70 | 31614 | 3951 | 18 | 0 | 60 | 0 | 0 | logfile |
✔ | 7UPL | 26669 | 2023-02-28 | 2022-04-15 | 4.1 | 4.41 | 4.14 | 4.2 | 0.004 | 0.65 | 0.0 | 0.05 | 13.58 | 0.00 | 2.086 | 7.13 | 0.00 | 6.4 | 93.6 | 0.0 | -1.29 | 0.78 | 0.72 | — | 4.2 | 0.004 | 0.62 | 0.0 | 0.05 | 13.64 | 0.00 | 2.091 | 7.62 | 0.00 | 6.3 | 93.7 | 0.0 | -1.19 | 0.56 | 0.82 | 0.81 | — | 32145 | 4031 | 23 | 0 | 54 | 0 | 0 | logfile |
✔ | 6PoF | 20414 | 2023-02-28 | 2019-07-03 | 4.3 | 4.41 | — | 4.3 | 0.006 | 0.95 | 0.0 | 0.06 | 14.30 | 0.01 | 2.196 | 6.57 | 0.39 | 6.6 | 93.3 | 0.1 | -4.95 | 0.76 | 0.67 | — | 4.3 | 0.003 | 0.71 | 0.0 | 0.05 | 13.70 | 0.00 | 2.075 | 13.73 | 0.36 | 6.6 | 93.3 | 0.1 | -1.85 | 0.73 | 0.76 | 0.68 | — | 31624 | 4084 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VVU | 32148 | 2023-02-28 | 2021-11-09 | 3.4 | 4.41 | — | 3.4 | 0.006 | 0.75 | 0.0 | 0.05 | 24.83 | 0.00 | 2.216 | 8.78 | 0.31 | 1.5 | 98.5 | 0.0 | 1.82 | 0.88 | 0.80 | 1.79 | 3.4 | 0.004 | 0.61 | 0.0 | 0.03 | 25.68 | 0.00 | 2.152 | 11.55 | 0.08 | 2.4 | 97.6 | 0.0 | 2.33 | 1.29 | 0.90 | 0.84 | 1.55 | 19374 | 1466 | 16 | 359 | 1 | 0 | 0 | logfile |
✔ | 6U9o | 20701 | 2023-02-28 | 2019-09-09 | 3.36 | 3.10 | 3.35 | 3.8 | 0.018 | 1.66 | 0.0 | 0.07 | 17.19 | 0.01 | 2.177 | 7.30 | 8.31 | 7.3 | 92.7 | 0.0 | -4.12 | 0.59 | 0.79 | 2.41 | 3.7 | 0.004 | 0.80 | 0.0 | 0.05 | 17.59 | 0.00 | 2.159 | 17.84 | 0.98 | 7.5 | 92.5 | 0.0 | -1.10 | 0.71 | 0.60 | 0.80 | 1.61 | 31792 | 4016 | 24 | 0 | 40 | 0 | 0 | logfile |
✔ | 6UA4 | 20705 | 2023-02-28 | 2019-09-10 | 3.65 | 3.84 | 3.40 | 3.8 | 0.017 | 1.57 | 0.0 | 0.07 | 15.56 | 0.01 | 2.226 | 7.04 | 2.60 | 7.8 | 92.2 | 0.0 | -4.26 | 0.62 | 0.82 | 2.42 | 3.8 | 0.004 | 0.87 | 0.0 | 0.05 | 17.14 | 0.00 | 2.098 | 18.51 | 0.89 | 6.9 | 93.1 | 0.0 | -1.88 | 1.64 | 0.62 | 0.81 | 1.55 | 31726 | 4016 | 24 | 0 | 38 | 0 | 0 | logfile |
✔ | 7TMP | 25998 | 2023-02-28 | 2022-01-19 | 3.3 | 3.47 | — | 3.4 | 0.004 | 0.54 | 0.0 | 0.04 | 12.38 | 0.00 | 1.989 | 8.91 | 0.38 | 3.5 | 96.5 | 0.1 | 1.23 | 0.78 | 0.84 | 3.41 | 3.4 | 0.003 | 0.54 | 0.0 | 0.04 | 14.07 | 0.00 | 1.940 | 8.56 | 0.29 | 2.9 | 97.1 | 0.0 | 1.21 | 0.28 | 0.79 | 0.86 | 2.88 | 32105 | 4805 | 16 | 0 | 2 | 0 | 0 | logfile |
✔ | 7TMQ | 25999 | 2023-02-28 | 2022-01-19 | 3.3 | 3.42 | — | 3.4 | 0.004 | 0.57 | 2.0 | 0.04 | 12.67 | 0.00 | 2.026 | 9.95 | 0.38 | 2.7 | 97.3 | 0.0 | 1.28 | 0.77 | 0.83 | 3.33 | 3.4 | 0.004 | 0.54 | 0.0 | 0.04 | 13.96 | 0.00 | 1.947 | 9.19 | 0.38 | 2.9 | 97.1 | 0.0 | 1.25 | 0.27 | 0.79 | 0.86 | 2.79 | 31642 | 4736 | 16 | 0 | 2 | 0 | 0 | logfile |