Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7MR2	23954	2022-07-04	2021-05-07	4.3	4.72	—	4.5	0.003	0.75	0.0	0.05	14.96	0.01	2.257	5.86	0.00	5.1	94.9	0.0	-1.32	0.90	0.84	—	4.5	0.002	0.57	0.0	0.04	14.89	0.00	2.164	9.94	0.00	4.6	95.4	0.0	0.12	0.29	0.90	0.84	—	16671	2075	3	0	0	0	0	logfile
✔	7N65	24195	2022-07-05	2021-06-07	4.15	4.35	—	4.2	0.011	1.18	0.0	0.06	14.11	0.01	1.935	36.16	4.29	15.2	84.6	0.2	-4.44	0.78	0.77	—	4.1	0.005	0.88	0.0	0.05	12.94	0.01	2.068	24.22	0.00	13.1	86.9	0.0	-3.04	1.51	0.77	0.76	—	21525	2454	72	0	189	0	0	logfile
✔	7N62	24192	2022-07-03	2021-06-07	4.0	3.42	—	3.9	0.006	0.81	0.0	0.05	13.91	0.01	2.203	21.29	0.00	14.9	85.1	0.0	-2.74	0.73	0.81	—	3.9	0.004	0.85	0.0	0.05	16.12	0.01	2.120	19.03	0.65	11.3	88.7	0.0	-2.24	0.50	0.71	0.79	—	5613	712	4	0	5	0	0	logfile
✔	7LZi	23607	2022-07-03	2021-03-09	4.39	3.64	—	3.5	0.005	0.93	0.0	0.06	11.35	0.01	2.234	4.41	0.32	5.5	94.5	0.0	-4.68	0.74	0.74	—	3.5	0.005	0.78	0.0	0.05	13.45	0.00	2.101	18.06	0.00	6.3	93.7	0.0	-1.29	2.32	0.75	0.77	—	11782	1484	12	0	8	0	0	logfile
✔	7KBB	22788	2022-07-03	2020-10-01	4.02	2.37	4.07	2.0	0.006	1.16	0.0	0.06	14.88	0.01	2.073	15.05	1.58	5.4	94.1	0.5	-1.59	0.57	0.58	—	1.6	0.008	1.17	0.0	0.05	14.56	0.01	2.104	16.16	0.00	6.4	93.6	0.0	-0.45	1.23	0.59	0.59	—	6422	812	7	0	0	0	0	logfile
✔	7oKY	12973	2022-07-07	2021-05-18	4.14	3.86	—	3.5	0.004	0.76	0.0	0.05	16.00	0.01	2.093	6.13	0.02	2.7	97.3	0.0	-1.32	0.76	0.73	—	3.5	0.003	0.60	0.0	0.04	15.40	0.00	2.032	11.46	0.05	3.0	97.0	0.0	0.39	1.68	0.82	0.83	—	38341	4596	26	79	10	0	0	logfile
✔	7L8U	23237	2022-07-04	2021-01-01	4.5	4.63	4.35	4.5	0.021	1.74	2.0	0.14	10.91	0.02	2.199	2.75	0.00	2.9	97.1	0.0	0.24	0.73	0.78	—	4.5	0.003	0.67	0.0	0.04	12.81	0.00	2.098	12.15	0.00	3.7	96.3	0.0	-0.55	1.40	0.73	0.80	—	15475	1675	25	0	300	0	0	logfile
✔	7L8G	23233	2022-07-04	2020-12-31	4.3	4.35	4.01	4.1	0.021	1.72	0.0	0.15	10.08	0.02	2.354	1.55	0.00	1.2	98.8	0.0	0.64	0.79	0.81	—	4.1	0.004	0.66	0.0	0.05	12.23	0.00	2.111	10.27	0.07	3.0	97.0	0.0	-0.28	1.71	0.79	0.82	—	15802	1695	39	0	307	0	0	logfile
✔	7M9C	23723	2022-07-06	2021-03-30	4.2	4.61	3.85	4.2	0.003	0.64	4.0	0.04	14.79	0.00	1.350	9.52	0.10	2.6	97.3	0.1	0.09	0.78	0.67	—	4.3	0.003	0.75	0.0	0.04	15.32	0.00	2.133	16.54	0.00	2.5	97.4	0.2	0.85	6.10	0.83	0.83	—	30517	3598	26	66	10	0	0	logfile
✔	7L8D	23230	2022-07-04	2020-12-31	4.6	4.71	4.48	4.5	0.021	1.72	1.0	0.14	9.94	0.02	2.339	2.68	0.00	1.9	98.1	0.0	0.57	0.72	0.77	—	4.5	0.003	0.66	0.0	0.05	12.17	0.00	2.200	12.71	0.00	3.4	96.6	0.0	-0.67	1.41	0.73	0.80	—	15564	1662	49	0	309	0	0	logfile
✔	7N64	24193	2022-07-03	2021-06-07	4.2	3.94	—	3.9	0.009	1.04	0.0	0.06	15.15	0.01	2.157	36.93	1.78	20.8	78.9	0.3	-3.80	0.65	0.71	—	3.9	0.004	0.82	0.0	0.05	13.98	0.01	2.012	20.56	0.00	12.3	87.6	0.1	-2.80	0.99	0.63	0.69	—	7189	906	7	0	7	0	0	logfile
✔	7R7S	24302	2022-07-06	2021-06-25	4.23	4.48	—	4.3	0.004	0.96	0.0	0.06	15.64	0.01	2.294	6.47	0.03	9.3	90.6	0.1	-3.16	0.77	0.68	—	4.3	0.003	0.75	0.0	0.05	14.87	0.01	2.071	18.94	0.03	9.3	90.7	0.0	-1.68	2.21	0.81	0.77	—	33239	4207	14	0	12	0	0	logfile
✔	7BZY	30263	2022-07-03	2020-04-29	3.7	5.07	3.67	2.9	0.005	1.03	0.0	0.05	7.60	0.00	2.175	11.89	0.00	15.0	84.6	0.3	-5.26	0.62	0.47	—	3.4	0.003	0.80	0.0	0.05	5.52	0.00	2.116	12.77	0.00	14.4	85.6	0.0	-2.69	1.26	0.85	0.74	—	6169	1260	3	0	0	0	0	logfile
✔	7MR4	23956	2022-07-04	2021-05-07	4.5	4.68	—	4.5	0.004	0.86	0.0	0.05	16.97	0.01	2.014	7.27	0.00	5.4	94.6	0.0	-1.71	0.82	0.81	—	4.5	0.003	0.65	0.0	0.04	16.77	0.00	2.024	15.27	0.06	6.7	93.3	0.0	-0.39	0.53	0.82	0.83	—	17203	2057	5	33	0	0	0	logfile
✔	7L8W	23238	2022-07-04	2021-01-01	4.1	4.21	3.98	4.1	0.020	1.68	0.0	0.13	9.89	0.02	2.347	1.38	0.00	1.7	98.3	0.0	1.14	0.72	0.82	—	4.1	0.007	0.95	0.0	0.05	13.37	0.01	1.558	14.30	0.00	2.9	97.0	0.1	-0.08	1.38	0.73	0.83	—	15803	1714	22	0	298	0	0	logfile
✘	7oZ3	13119	2022-07-03	2021-06-25	4.46	4.17	4.34	4.0	0.008	1.24	2.0	0.08	23.05	0.00	1.315	8.45	0.29	4.3	95.7	0.0	0.64	0.85	0.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8209	804	8	88	2	0	0	logfile
✔	7P5J	13200	2022-07-03	2021-07-14	4.0	3.72	3.98	4.0	0.004	0.71	0.0	0.04	15.91	0.01	2.264	8.81	0.60	2.5	97.5	0.0	2.65	0.51	0.76	—	4.0	0.009	1.38	0.0	0.04	18.13	0.01	2.184	12.06	0.15	2.2	97.8	0.0	3.19	0.47	0.54	0.77	—	6250	798	6	0	8	0	0	logfile
✘	7D5K	30583	2022-07-04	2020-09-26	3.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17667	2181	9	0	12	0	0	logfile
✔	7oTQ	13065	2022-07-06	2021-06-10	4.8	5.78	4.82	5.0	0.004	0.76	0.0	0.05	24.91	0.01	2.055	6.93	1.26	4.1	95.5	0.4	-1.44	0.84	0.78	—	5.0	0.004	0.66	0.0	0.04	24.93	0.00	1.986	14.31	0.00	3.3	96.5	0.2	0.47	1.50	0.85	0.78	—	29140	1214	11	298	0	0	13365	logfile
✔	7RSi	24672	2022-07-03	2021-08-11	4.9	7.04	5.29	7.8	0.015	1.51	0.0	0.07	12.44	0.01	2.015	6.36	0.00	4.5	94.6	0.9	-0.32	0.82	0.69	—	7.7	0.003	0.60	0.0	0.04	13.12	0.00	1.828	17.23	0.00	6.6	93.4	0.0	-0.40	1.22	0.83	0.70	—	10886	686	2	0	2	0	5400	logfile

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