Table showing results for November 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XU0	33454	2022-11-29	2022-05-18	2.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	53028	3300	20	0	72	0	26135	logfile
✔	7QTQ	14145	2022-11-29	2022-01-15	3.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	55234	3577	8	0	24	0	27101	logfile
✔	8DT3	27690	2022-11-29	2022-07-25	3.3	3.99	3.55	3.7	0.004	0.64	0.0	0.04	14.39	0.00	2.125	10.81	0.00	8.2	91.8	0.0	-0.65	0.78	0.83	2.90	3.7	0.004	0.64	0.0	0.04	16.10	0.00	2.103	12.68	0.00	8.0	92.0	0.0	-0.55	0.40	0.79	0.85	2.81	3821	485	4	0	3	0	0	logfile
✔	8DM0	27522	2022-11-29	2022-07-08	3.21	3.62	3.12	3.5	0.006	1.00	0.0	0.06	12.66	0.01	2.288	0.83	0.00	3.5	96.5	0.0	-1.78	0.59	0.80	3.29	3.6	0.004	0.67	0.0	0.05	15.20	0.00	2.120	9.92	0.37	5.2	94.8	0.0	-0.99	0.47	0.61	0.82	2.44	2480	314	3	0	1	0	0	logfile
✔	8DLY	27520	2022-11-29	2022-07-08	3.0	3.63	2.92	3.6	0.005	0.93	0.0	0.06	12.34	0.01	2.317	1.86	0.37	3.5	96.5	0.0	-1.46	0.63	0.81	3.36	3.6	0.005	0.76	0.0	0.05	16.13	0.00	2.288	13.83	3.00	4.5	95.5	0.0	-1.21	1.26	0.63	0.82	3.47	2483	314	3	0	1	0	0	logfile
✔	8DLS	27514	2022-11-29	2022-07-08	2.66	3.23	2.64	3.1	0.006	0.90	0.0	0.06	12.27	0.01	2.288	4.45	0.00	4.8	95.2	0.0	-0.59	0.70	0.83	4.60	3.1	0.004	0.66	0.0	0.05	14.72	0.00	2.194	9.53	2.30	3.7	96.3	0.0	0.27	0.45	0.70	0.83	4.34	4017	495	5	0	7	0	0	logfile
✔	8DLR	27512	2022-11-29	2022-07-08	2.51	3.02	2.49	2.9	0.006	0.79	0.0	0.06	12.52	0.01	2.291	3.79	0.00	2.6	97.4	0.0	-0.80	0.72	0.84	5.48	2.9	0.003	0.58	0.0	0.04	14.89	0.00	2.200	7.20	1.15	3.2	96.8	0.0	-0.07	1.06	0.72	0.85	5.18	4027	505	4	0	6	0	0	logfile
✔	8Di5	27439	2022-11-29	2022-06-28	3.04	3.55	3.03	3.5	0.006	0.95	0.0	0.06	12.34	0.01	2.300	4.17	0.38	3.3	96.7	0.0	-2.40	0.65	0.80	4.29	3.5	0.003	0.60	0.0	0.04	15.70	0.00	2.313	11.48	0.00	3.6	96.4	0.0	-1.34	0.54	0.65	0.81	3.80	2467	311	3	0	1	0	0	logfile
✔	8DAD	27270	2022-11-29	2022-06-13	3.85	4.05	3.91	4.0	0.004	0.81	1.0	0.05	16.30	0.01	2.238	16.32	0.63	5.0	95.0	0.0	-0.96	0.65	0.73	1.59	4.0	0.003	0.74	0.0	0.05	16.55	0.01	2.233	13.12	1.27	5.0	95.0	0.0	-0.92	0.46	0.65	0.74	1.80	3255	424	5	0	4	0	0	logfile
✔	8CZi	27098	2022-11-29	2022-05-24	2.22	2.26	2.61	2.0	0.004	0.33	0.0	0.03	14.48	0.00	2.382	6.62	0.00	0.0	100.0	0.0	2.90	0.78	0.80	1.97	2.0	0.004	0.40	0.0	0.03	15.24	0.00	2.167	6.23	0.00	0.0	100.0	0.0	5.34	0.86	0.83	0.83	1.97	2550	339	6	0	0	0	0	logfile
✔	8CXo	27062	2022-11-29	2022-05-22	3.7	4.10	3.65	4.1	0.003	0.58	0.0	0.04	10.02	0.00	2.329	2.39	0.00	2.7	96.9	0.4	1.90	0.60	0.77	1.79	4.1	0.003	0.75	0.0	0.04	15.76	0.00	2.158	15.14	0.43	4.2	95.8	0.0	1.18	2.09	0.62	0.80	0.81	4392	551	1	0	1	0	0	logfile
✘	8CTK	26993	2022-11-29	2022-05-15	3.52	3.87	3.55	3.9	0.003	0.69	0.0	0.05	14.37	0.00	2.347	4.53	0.00	3.8	96.2	0.0	-1.07	0.54	0.70	0.86	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3042	376	2	0	0	0	0	logfile
✔	8CTJ	26992	2022-11-29	2022-05-15	4.74	4.27	4.78	5.3	0.005	0.92	0.0	0.05	13.47	0.01	2.233	6.13	0.00	4.6	95.4	0.0	-0.72	0.43	0.48	—	4.2	0.003	0.72	0.0	0.04	13.77	0.00	2.179	12.25	0.00	4.8	95.2	0.0	0.49	1.73	0.49	0.57	—	3312	401	1	0	1	0	0	logfile
✔	8CSV	26972	2022-11-29	2022-05-13	2.7	2.53	2.72	2.6	0.002	0.47	0.0	0.04	11.85	0.00	2.246	3.83	1.03	2.7	97.1	0.2	0.82	0.53	0.85	5.33	2.6	0.003	0.52	0.0	0.04	15.83	0.00	2.176	6.42	0.26	2.7	97.1	0.2	2.09	0.60	0.58	0.88	4.74	3712	483	3	0	0	48	0	logfile
✔	8A8M	15233	2022-11-29	2022-06-23	4.0	5.84	4.31	4.3	0.004	0.89	0.0	0.05	17.75	0.00	2.218	29.38	1.56	8.5	91.4	0.2	-2.63	0.78	0.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5244	647	4	0	6	0	0	logfile
✘	7ZR8	14886	2022-11-29	2022-05-03	3.7	3.81	3.43	3.8	0.003	0.46	0.0	0.04	8.45	0.00	2.181	7.02	0.74	3.9	96.1	0.0	-0.94	0.72	0.82	2.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3693	471	4	0	1	0	0	logfile
✔	7Z4Z	14511	2022-11-29	2022-03-06	4.0	3.29	3.87	3.9	0.003	0.75	1.0	0.05	14.17	0.01	2.305	11.39	0.00	2.1	97.3	0.6	-4.82	0.61	0.72	—	3.9	0.003	0.84	0.0	0.05	16.82	0.00	2.218	11.94	0.22	13.8	85.9	0.3	-1.64	0.79	0.58	0.73	—	4817	673	4	0	0	0	0	logfile
✔	7Y14	33556	2022-11-29	2022-06-06	3.2	3.29	3.09	3.3	0.004	0.66	1.0	0.04	13.60	0.01	2.312	8.75	0.00	4.2	95.8	0.0	2.46	0.51	0.76	2.28	3.3	0.003	0.56	1.0	0.04	15.41	0.00	2.281	8.75	0.00	5.0	95.0	0.0	2.69	1.20	0.52	0.78	1.95	2145	265	1	0	4	0	0	logfile
✔	7Y13	33555	2022-11-29	2022-06-06	3.1	3.20	3.10	3.2	0.005	0.68	0.0	0.04	13.19	0.01	2.195	8.46	0.00	6.1	93.9	0.0	1.88	0.59	0.80	3.01	3.2	0.004	0.58	0.0	0.04	15.64	0.01	2.188	8.24	0.86	5.3	94.7	0.0	2.59	0.26	0.58	0.82	2.60	2199	264	1	0	7	2	0	logfile
✔	7XLT	33286	2022-11-29	2022-04-22	4.4	4.55	4.45	4.3	0.004	0.89	0.0	0.05	16.27	0.01	2.288	8.02	0.79	6.8	93.2	0.0	-2.19	0.68	0.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4985	431	4	80	0	0	0	logfile

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