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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6JGZ | 9824 | 2023-12-08 | 2019-02-16 | 4.6 | 4.96 | — | 4.6 | 0.007 | 1.13 | 0.0 | 0.06 | 11.54 | 0.01 | 2.171 | 11.98 | 0.73 | 11.3 | 88.3 | 0.4 | -4.06 | 0.78 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 109824 | 14368 | 12 | 0 | 4 | 0 | 0 | logfile |
✔ | 6JD1 | 9801 | 2023-12-09 | 2019-01-30 | 3.38 | 4.55 | — | 3.9 | 0.013 | 1.00 | 0.0 | 0.05 | 16.01 | 0.00 | 2.005 | 6.39 | 0.00 | 7.3 | 92.7 | 0.0 | -4.95 | 0.85 | 0.70 | 1.18 | 4.0 | 0.004 | 0.63 | 0.0 | 0.04 | 15.82 | 0.00 | 1.803 | 15.66 | 0.19 | 6.7 | 93.3 | 0.0 | -2.07 | 0.98 | 0.88 | 0.84 | 1.82 | 63427 | 3953 | 36 | 0 | 60 | 192 | 31469 | logfile |
✔ | 6JCZ | 9800 | 2023-12-09 | 2019-01-30 | 3.35 | 4.22 | — | 3.7 | 0.006 | 0.81 | 0.0 | 0.04 | 15.49 | 0.00 | 1.670 | 3.80 | 0.00 | 6.8 | 93.2 | 0.0 | -5.41 | 0.85 | 0.74 | 2.43 | 3.8 | 0.003 | 0.63 | 0.0 | 0.04 | 16.55 | 0.00 | 1.842 | 9.23 | 0.12 | 5.6 | 94.4 | 0.0 | -2.47 | 2.63 | 0.86 | 0.84 | 2.57 | 63476 | 3959 | 36 | 0 | 48 | 99 | 31525 | logfile |
✔ | 6JC3 | 9793 | 2023-12-08 | 2019-01-28 | 4.8 | 4.87 | — | 4.8 | 0.010 | 1.35 | 2.0 | 0.07 | 15.57 | 0.01 | 1.512 | 30.30 | 3.10 | 10.1 | 89.1 | 0.8 | -4.39 | 0.42 | 0.78 | — | 4.7 | 0.004 | 0.77 | 0.0 | 0.04 | 13.92 | 0.00 | 2.100 | 14.75 | 0.00 | 6.5 | 93.5 | 0.0 | 0.86 | 4.22 | 0.43 | 0.81 | — | 3154 | 391 | 2 | 6 | 0 | 0 | 0 | logfile |
✔ | 6JBJ | 9791 | 2023-12-08 | 2019-01-25 | 3.6 | 3.75 | — | 3.7 | 0.008 | 1.04 | 0.0 | 0.06 | 16.77 | 0.01 | 2.206 | 10.64 | 0.00 | 9.1 | 90.9 | 0.0 | -6.19 | 0.65 | 0.83 | 2.03 | 3.7 | 0.004 | 0.78 | 0.0 | 0.04 | 18.21 | 0.00 | 2.044 | 18.62 | 0.79 | 8.6 | 91.4 | 0.0 | -2.08 | 0.63 | 0.65 | 0.82 | 1.11 | 9166 | 1130 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 6JBH | 9790 | 2023-12-08 | 2019-01-25 | 3.94 | 4.06 | — | 4.0 | 0.007 | 1.23 | 0.0 | 0.07 | 12.50 | 0.03 | 2.260 | 6.09 | 0.53 | 14.3 | 85.5 | 0.2 | -5.84 | 0.68 | 0.81 | 2.48 | 4.0 | 0.004 | 0.96 | 0.0 | 0.05 | 16.03 | 0.00 | 2.205 | 14.25 | 0.85 | 15.5 | 84.5 | 0.0 | -2.08 | 0.98 | 0.68 | 0.81 | 2.06 | 8592 | 1062 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6J8J | 9782 | 2023-12-09 | 2019-01-19 | 3.2 | 3.36 | — | 3.3 | 0.010 | 1.51 | 0.0 | 0.16 | 21.90 | 0.01 | 1.829 | 71.00 | 28.80 | 2.5 | 96.2 | 1.3 | 2.79 | 0.59 | 0.76 | 1.66 | 3.4 | 0.004 | 0.80 | 0.0 | 0.06 | 17.84 | 0.00 | 2.132 | 9.59 | 0.93 | 4.2 | 95.7 | 0.1 | 0.68 | 1.44 | 0.60 | 0.83 | 1.75 | 11764 | 1433 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 6J8i | 9782 | 2023-12-09 | 2019-01-19 | 3.2 | 3.36 | — | 3.3 | 0.010 | 1.51 | 0.0 | 0.16 | 21.89 | 0.01 | 1.829 | 71.34 | 28.73 | 2.5 | 96.2 | 1.3 | 2.78 | 0.59 | 0.76 | 1.66 | 3.4 | 0.005 | 0.82 | 0.0 | 0.07 | 17.86 | 0.00 | 2.121 | 10.31 | 1.16 | 4.3 | 95.5 | 0.2 | 0.48 | 1.43 | 0.59 | 0.82 | 1.86 | 11764 | 1433 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 6J8G | 9781 | 2023-12-09 | 2019-01-19 | 3.2 | 3.35 | — | 3.3 | 0.010 | 1.54 | 1.0 | 0.10 | 21.73 | 0.01 | 1.886 | 58.56 | 27.17 | 2.0 | 96.6 | 1.3 | 2.85 | 0.60 | 0.78 | 1.54 | 3.3 | 0.003 | 0.71 | 0.0 | 0.04 | 18.18 | 0.00 | 2.168 | 8.07 | 0.39 | 4.2 | 95.5 | 0.3 | 0.69 | 0.80 | 0.60 | 0.84 | 1.85 | 11763 | 1433 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 6J8H | 9781 | 2023-12-09 | 2019-01-19 | 3.2 | 3.35 | — | 3.3 | 0.010 | 1.54 | 1.0 | 0.10 | 21.72 | 0.01 | 1.886 | 58.60 | 27.17 | 2.0 | 96.6 | 1.3 | 2.87 | 0.60 | 0.78 | 1.53 | 3.3 | 0.003 | 0.72 | 0.0 | 0.04 | 18.11 | 0.00 | 2.186 | 7.65 | 0.31 | 3.7 | 96.1 | 0.3 | 0.70 | 0.80 | 0.60 | 0.84 | 1.81 | 11763 | 1433 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 6J8E | 9780 | 2023-12-09 | 2019-01-18 | 3.0 | 3.18 | — | 3.2 | 0.008 | 1.43 | 4.0 | 0.08 | 13.95 | 0.01 | 1.927 | 13.58 | 5.14 | 6.4 | 92.6 | 1.0 | -5.60 | 0.61 | 0.77 | 3.02 | 3.2 | 0.003 | 0.77 | 0.0 | 0.04 | 15.93 | 0.00 | 2.219 | 7.93 | 2.53 | 5.1 | 94.5 | 0.4 | 0.73 | 0.85 | 0.61 | 0.85 | 2.13 | 10482 | 1277 | 7 | 0 | 10 | 0 | 0 | logfile |
✔ | 6J30 | 9773 | 2023-12-07 | 2019-01-03 | 4.5 | 4.74 | — | 4.6 | 0.002 | 0.44 | 0.0 | 0.04 | 7.35 | 0.00 | 2.093 | 8.60 | 0.07 | 6.4 | 93.4 | 0.3 | -3.38 | 0.86 | 0.72 | — | 4.5 | 0.004 | 0.76 | 0.0 | 0.04 | 12.18 | 0.00 | 1.918 | 21.54 | 0.01 | 5.4 | 94.4 | 0.2 | -0.88 | 1.91 | 0.89 | 0.77 | — | 106227 | 13504 | 47 | 0 | 0 | 0 | 0 | logfile |
✔ | 6J2X | 9772 | 2023-12-07 | 2019-01-03 | 3.8 | 3.99 | — | 3.9 | 0.002 | 0.40 | 0.0 | 0.04 | 7.12 | 0.00 | 2.220 | 6.65 | 0.00 | 5.8 | 94.1 | 0.1 | -3.52 | 0.80 | 0.70 | 0.49 | 3.9 | 0.004 | 0.78 | 1.0 | 0.04 | 15.31 | 0.00 | 2.050 | 18.52 | 0.40 | 4.7 | 95.2 | 0.1 | -0.69 | 1.88 | 0.84 | 0.78 | 0.88 | 106176 | 13501 | 47 | 0 | 0 | 0 | 0 | logfile |
✔ | 6J2Q | 9771 | 2023-12-07 | 2019-01-02 | 3.8 | 3.95 | — | 3.9 | 0.002 | 0.40 | 0.0 | 0.04 | 7.17 | 0.00 | 2.202 | 6.58 | 0.00 | 5.5 | 94.4 | 0.1 | -3.50 | 0.77 | 0.68 | 0.88 | 3.9 | 0.003 | 0.74 | 0.0 | 0.04 | 15.50 | 0.00 | 2.058 | 15.76 | 0.38 | 4.1 | 95.8 | 0.1 | -0.48 | 2.27 | 0.82 | 0.76 | 1.06 | 106311 | 13518 | 47 | 0 | 0 | 0 | 0 | logfile |
✔ | 6J0M | 9764 | 2023-12-09 | 2018-12-24 | 3.9 | 3.79 | — | 3.8 | 0.007 | 0.98 | 0.0 | 0.06 | 15.91 | 0.01 | 2.282 | 6.73 | 0.87 | 5.2 | 94.8 | 0.0 | -4.05 | 0.52 | 0.82 | 1.83 | 3.8 | 0.003 | 0.66 | 0.0 | 0.05 | 17.65 | 0.00 | 2.174 | 12.35 | 0.22 | 5.9 | 94.1 | 0.0 | -1.95 | 1.29 | 0.52 | 0.82 | 1.43 | 12585 | 1605 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6iZV | 9758 | 2023-12-07 | 2018-12-20 | 4.2 | 4.27 | — | 4.2 | 0.005 | 0.90 | 0.0 | 0.05 | 10.55 | 0.01 | 2.170 | 5.77 | 0.00 | 4.9 | 95.1 | 0.0 | -3.60 | 0.68 | 0.81 | — | 4.1 | 0.004 | 0.73 | 0.0 | 0.05 | 12.56 | 0.00 | 1.962 | 14.21 | 0.00 | 6.6 | 93.4 | 0.0 | -0.84 | 1.01 | 0.70 | 0.82 | — | 5624 | 698 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 6iYC | 9751 | 2023-12-09 | 2018-12-14 | 2.6 | 2.84 | — | 2.9 | 0.011 | 1.20 | 0.0 | 0.07 | 12.98 | 0.01 | 2.053 | 3.52 | 0.88 | 7.5 | 92.3 | 0.2 | -3.74 | 0.71 | 0.85 | 3.81 | 2.8 | 0.003 | 0.69 | 0.0 | 0.04 | 15.25 | 0.00 | 2.124 | 7.36 | 2.72 | 5.4 | 94.6 | 0.1 | 0.35 | 1.29 | 0.71 | 0.87 | 2.65 | 11037 | 1355 | 14 | 0 | 26 | 0 | 0 | logfile |
✔ | 6iWW | 9743 | 2023-12-09 | 2018-12-08 | 3.9 | 3.82 | — | 3.8 | 0.008 | 1.09 | 0.0 | 0.06 | 13.48 | 0.01 | 2.301 | 5.79 | 0.00 | 4.2 | 95.8 | 0.0 | -4.19 | 0.63 | 0.81 | 2.15 | 3.8 | 0.004 | 0.74 | 0.0 | 0.04 | 15.37 | 0.01 | 2.100 | 15.58 | 0.48 | 3.9 | 96.1 | 0.0 | 0.13 | 1.51 | 0.64 | 0.82 | 1.26 | 10227 | 1386 | 9 | 0 | 3 | 0 | 0 | logfile |
✔ | 6iV6 | 9742 | 2023-12-09 | 2018-12-02 | 3.6 | 3.59 | — | 3.6 | 0.005 | 1.04 | 0.0 | 0.05 | 17.33 | 0.01 | 2.261 | 4.91 | 0.61 | 6.7 | 93.3 | 0.1 | -5.17 | 0.64 | 0.75 | 2.10 | 3.6 | 0.003 | 0.69 | 0.0 | 0.04 | 18.79 | 0.00 | 2.167 | 9.12 | 0.20 | 8.5 | 91.5 | 0.0 | -2.49 | 0.92 | 0.68 | 0.75 | 2.06 | 10158 | 1209 | 2 | 26 | 0 | 0 | 0 | logfile |
✔ | 6iTC | 9731 | 2023-12-10 | 2018-11-21 | 3.45 | 3.58 | — | 3.5 | 0.016 | 1.48 | 5.0 | 0.08 | 13.87 | 0.01 | 1.574 | 8.12 | 1.02 | 9.0 | 90.9 | 0.1 | -4.35 | 0.69 | 0.77 | 1.77 | 3.5 | 0.003 | 0.74 | 0.0 | 0.04 | 15.97 | 0.00 | 2.055 | 12.22 | 0.54 | 6.7 | 93.3 | 0.0 | -0.83 | 1.46 | 0.72 | 0.83 | 1.54 | 13844 | 1738 | 9 | 0 | 6 | 0 | 0 | logfile |