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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6JT1 | 9884 | 2023-07-04 | 2019-04-08 | 3.9 | 4.00 | — | 3.9 | 0.004 | 0.77 | 0.0 | 0.04 | 12.20 | 0.00 | 2.212 | 10.33 | 4.62 | 5.8 | 93.8 | 0.4 | -2.92 | 0.77 | 0.81 | 2.21 | 3.9 | 0.003 | 0.76 | 0.0 | 0.04 | 14.37 | 0.00 | 2.123 | 11.28 | 0.33 | 4.3 | 95.6 | 0.1 | 0.34 | 1.25 | 0.81 | 0.82 | 2.01 | 8602 | 1118 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 6JT0 | 9883 | 2023-07-04 | 2019-04-08 | 4.0 | 4.28 | — | 4.0 | 0.004 | 0.71 | 0.0 | 0.04 | 12.21 | 0.00 | 2.212 | 11.03 | 4.73 | 5.7 | 93.9 | 0.4 | -2.84 | 0.85 | 0.82 | — | 4.0 | 0.003 | 0.86 | 0.0 | 0.05 | 13.73 | 0.00 | 2.209 | 12.74 | 0.22 | 5.1 | 94.9 | 0.0 | 0.23 | 1.67 | 0.86 | 0.82 | — | 8602 | 1118 | 2 | 0 | 1 | 0 | 0 | logfile |
✘ | 6JSi | 9882 | 2023-07-06 | 2019-04-08 | 4.7 | 4.70 | — | 4.6 | 0.007 | 1.48 | 0.0 | 0.06 | 15.33 | 0.01 | 2.231 | 10.68 | 2.42 | 23.2 | 72.3 | 4.5 | -6.05 | 0.64 | 0.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62820 | 5844 | 9 | 0 | 4044 | 0 | 0 | logfile |
✘ | 6JRS | 9880 | 2023-07-05 | 2019-04-05 | 3.7 | 3.86 | — | 3.7 | 0.010 | 1.08 | 0.0 | 0.06 | 16.39 | 0.01 | 2.225 | 8.77 | 0.90 | 12.4 | 87.2 | 0.3 | -5.87 | 0.74 | 0.80 | 1.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 112168 | 14652 | 20 | 0 | 24 | 0 | 0 | logfile |
✘ | 6JRR | 9879 | 2023-07-04 | 2019-04-05 | 3.9 | 4.09 | — | 3.9 | 0.010 | 1.14 | 4.0 | 0.06 | 15.90 | 0.01 | 1.827 | 8.44 | 0.80 | 10.2 | 89.5 | 0.2 | -5.20 | 0.76 | 0.81 | 1.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 109132 | 14268 | 12 | 0 | 16 | 0 | 0 | logfile |
✔ | 6JQM | 9874 | 2023-07-14 | 2019-03-31 | 3.3 | 3.54 | — | 3.5 | 0.005 | 0.83 | 0.0 | 0.05 | 10.76 | 0.01 | 2.304 | 5.76 | 0.06 | 5.8 | 94.2 | 0.0 | -4.47 | 0.76 | 0.84 | 3.78 | 3.5 | 0.003 | 0.61 | 0.0 | 0.04 | 14.51 | 0.00 | 2.188 | 10.16 | 0.09 | 4.7 | 95.3 | 0.0 | -1.23 | 2.69 | 0.78 | 0.87 | 2.95 | 30936 | 4068 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 6JQ0 | 9872 | 2023-07-12 | 2019-03-28 | 3.54 | 4.12 | — | 4.0 | 0.007 | 1.21 | 0.0 | 0.06 | 16.27 | 0.01 | 2.235 | 4.90 | 0.63 | 13.0 | 86.5 | 0.5 | -5.59 | 0.69 | 0.85 | 1.20 | 4.0 | 0.004 | 0.84 | 0.0 | 0.05 | 17.30 | 0.01 | 2.062 | 9.76 | 0.43 | 13.0 | 86.7 | 0.3 | -2.20 | 0.54 | 0.66 | 0.83 | 0.99 | 26917 | 3323 | 13 | 0 | 20 | 0 | 0 | logfile |
✔ | 6JPU | 9871 | 2023-07-14 | 2019-03-28 | 4.27 | 5.69 | — | 6.0 | 0.007 | 1.03 | 0.0 | 0.06 | 17.27 | 0.01 | 1.984 | 70.08 | 9.58 | 9.8 | 90.1 | 0.2 | -3.97 | 0.80 | 0.76 | — | 5.2 | 0.003 | 0.67 | 0.0 | 0.04 | 13.41 | 0.00 | 1.861 | 100.50 | 0.00 | 10.5 | 89.5 | 0.0 | -1.47 | 1.12 | 0.80 | 0.78 | — | 30378 | 3462 | 6 | 0 | 0 | 0 | 2610 | logfile |
✔ | 6JPQ | 9870 | 2023-07-13 | 2019-03-27 | 4.44 | 5.93 | — | 7.2 | 0.006 | 1.13 | 0.0 | 0.06 | 12.18 | 0.01 | 2.195 | 10.45 | 0.57 | 9.1 | 90.9 | 0.0 | -5.01 | 0.81 | 0.77 | — | 6.0 | 0.004 | 0.82 | 0.0 | 0.05 | 12.94 | 0.01 | 2.056 | 29.36 | 0.00 | 9.2 | 90.8 | 0.0 | -2.14 | 1.80 | 0.83 | 0.81 | — | 27768 | 3462 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 6JPB | 9869 | 2023-07-10 | 2019-03-26 | 2.9 | 3.09 | — | 3.1 | 0.015 | 1.48 | 3.0 | 0.12 | 13.70 | 0.01 | 1.739 | 21.16 | 4.38 | 8.5 | 91.1 | 0.4 | -4.25 | 0.61 | 0.77 | 2.33 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21989 | 2694 | 14 | 0 | 35 | 0 | 0 | logfile |
✘ | 6JPA | 9868 | 2023-07-10 | 2019-03-26 | 2.6 | 2.76 | — | 2.8 | 0.013 | 1.51 | 3.0 | 0.12 | 17.16 | 0.01 | 1.921 | 38.35 | 11.40 | 8.8 | 89.5 | 1.7 | -3.83 | 0.54 | 0.61 | 1.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22232 | 2694 | 14 | 0 | 42 | 0 | 0 | logfile |
✘ | 6JP8 | 9867 | 2023-07-10 | 2019-03-26 | 2.7 | 2.51 | — | 2.6 | 0.013 | 1.48 | 8.0 | 0.12 | 14.01 | 0.01 | 1.877 | 25.96 | 6.07 | 7.2 | 92.3 | 0.5 | -4.05 | 0.38 | 0.52 | 1.99 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21801 | 2694 | 14 | 0 | 29 | 0 | 0 | logfile |
✘ | 6JP5 | 9866 | 2023-07-10 | 2019-03-25 | 2.9 | 3.03 | — | 3.1 | 0.016 | 1.54 | 4.0 | 0.13 | 14.11 | 0.01 | 1.921 | 28.83 | 6.11 | 7.7 | 91.7 | 0.6 | -3.65 | 0.56 | 0.62 | 2.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22068 | 2694 | 14 | 0 | 39 | 0 | 0 | logfile |
✘ | 6Jo6 | 9854 | 2023-07-19 | 2019-03-20 | 2.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 45099 | 3899 | 36 | 0 | 285 | 0 | 0 | logfile |
✘ | 6Jo5 | 9853 | 2023-07-19 | 2019-03-20 | 2.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 48476 | 4170 | 40 | 0 | 313 | 0 | 0 | logfile |
✔ | 6JNX | 9852 | 2023-07-15 | 2019-03-18 | 4.08 | 4.16 | — | 4.1 | 0.012 | 1.23 | 0.0 | 0.06 | 16.11 | 0.01 | 1.858 | 11.37 | 0.90 | 7.7 | 92.0 | 0.3 | -3.99 | 0.61 | 0.68 | — | 4.1 | 0.005 | 0.79 | 0.0 | 0.05 | 16.88 | 0.00 | 1.902 | 12.21 | 0.03 | 7.8 | 92.1 | 0.1 | -1.21 | 1.62 | 0.71 | 0.80 | — | 32639 | 3771 | 12 | 144 | 3 | 0 | 0 | logfile |
✔ | 6JNF | 9851 | 2023-07-04 | 2019-03-14 | 3.81 | 3.96 | 3.73 | 4.0 | 0.009 | 1.23 | 0.0 | 0.06 | 17.14 | 0.01 | 2.304 | 5.24 | 1.02 | 16.7 | 83.3 | 0.0 | -6.16 | 0.64 | 0.82 | 1.38 | 4.0 | 0.003 | 0.91 | 0.0 | 0.05 | 17.91 | 0.00 | 2.133 | 11.24 | 0.64 | 10.5 | 89.5 | 0.0 | -2.83 | 1.47 | 0.67 | 0.82 | 1.30 | 7271 | 924 | 11 | 0 | 1 | 0 | 0 | logfile |
✔ | 6JMR | 9850 | 2023-07-05 | 2019-03-13 | 4.1 | 4.26 | 4.05 | 4.1 | 0.007 | 1.06 | 0.0 | 0.06 | 14.05 | 0.01 | 2.239 | 7.77 | 0.56 | 7.1 | 92.8 | 0.1 | -4.07 | 0.83 | 0.78 | — | 4.1 | 0.005 | 0.78 | 0.0 | 0.05 | 13.20 | 0.01 | 2.050 | 16.89 | 0.00 | 8.5 | 91.5 | 0.0 | -2.29 | 0.77 | 0.84 | 0.79 | — | 9809 | 1223 | 7 | 0 | 69 | 0 | 0 | logfile |
✔ | 6JMQ | 9849 | 2023-07-05 | 2019-03-13 | 3.31 | 3.52 | 3.25 | 3.5 | 0.005 | 0.96 | 0.0 | 0.05 | 13.84 | 0.01 | 2.293 | 3.84 | 0.29 | 4.3 | 95.6 | 0.1 | -5.09 | 0.71 | 0.79 | 2.84 | 3.5 | 0.004 | 0.72 | 0.0 | 0.04 | 15.38 | 0.00 | 2.137 | 8.85 | 0.77 | 4.8 | 95.2 | 0.0 | -1.38 | 1.45 | 0.74 | 0.83 | 2.58 | 9950 | 1223 | 7 | 0 | 74 | 0 | 0 | logfile |
✔ | 6JND | 9848 | 2023-07-03 | 2019-03-14 | 3.9 | 3.92 | — | 3.9 | 0.006 | 0.82 | 0.0 | 0.05 | 15.64 | 0.01 | 2.316 | 3.79 | 11.73 | 5.8 | 94.2 | 0.0 | -5.73 | 0.43 | 0.77 | 1.85 | 3.9 | 0.004 | 0.65 | 0.0 | 0.05 | 15.55 | 0.00 | 2.233 | 8.48 | 0.29 | 4.3 | 95.7 | 0.0 | -0.90 | 1.27 | 0.48 | 0.87 | 2.03 | 3294 | 419 | 1 | 0 | 1 | 0 | 0 | logfile |