Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6JQo	9876	2023-02-27	2019-03-31	3.1	3.28	—	3.3	0.025	1.01	0.0	0.26	11.11	0.01	2.337	3.22	0.13	5.3	94.7	0.0	-3.99	0.79	0.87	4.25	3.3	0.005	0.85	0.0	0.05	13.81	0.01	1.981	8.05	0.03	5.5	94.5	0.0	-3.52	1.19	0.77	0.88	4.08	31254	4068	12	0	12	0	0	logfile
✔	6JQN	9875	2023-02-27	2019-03-31	3.1	3.22	—	3.2	0.010	1.01	0.0	0.06	11.56	0.01	2.274	5.69	0.00	6.0	94.0	0.0	-4.15	0.77	0.84	3.79	3.2	0.003	0.61	0.0	0.04	15.10	0.00	2.051	11.42	0.16	4.4	95.6	0.0	-1.13	0.69	0.79	0.87	2.75	31278	4068	12	0	12	0	0	logfile
✔	6JQM	9874	2023-02-27	2019-03-31	3.3	3.54	—	3.5	0.005	0.83	0.0	0.05	10.76	0.01	2.304	5.76	0.06	5.8	94.2	0.0	-4.47	0.76	0.84	3.78	3.5	0.003	0.61	0.0	0.04	14.51	0.00	2.188	10.13	0.09	4.7	95.3	0.0	-1.23	2.69	0.78	0.87	2.95	30936	4068	12	0	6	0	0	logfile
✔	6JQL	9873	2023-02-27	2019-03-31	2.9	3.07	—	3.1	0.004	0.81	0.0	0.05	10.10	0.01	2.305	6.74	0.16	4.8	95.2	0.0	-4.01	0.77	0.84	3.95	3.0	0.006	0.74	0.0	0.05	15.70	0.00	2.135	10.82	1.73	4.0	96.0	0.0	-0.80	1.68	0.77	0.87	3.34	30648	4068	6	0	0	0	0	logfile
✔	6JQ0	9872	2023-02-26	2019-03-28	3.54	4.12	—	4.0	0.007	1.21	0.0	0.06	16.27	0.01	2.235	4.90	0.63	13.0	86.5	0.5	-5.59	0.69	0.85	1.20	4.0	0.005	0.87	0.0	0.05	17.37	0.01	2.042	11.00	0.70	13.4	86.3	0.3	-2.28	0.53	0.65	0.82	1.11	26917	3323	13	0	20	0	0	logfile
✔	6JPU	9871	2023-02-27	2019-03-28	4.27	5.69	—	6.0	0.007	1.03	0.0	0.06	17.27	0.01	1.984	70.08	9.58	9.8	90.1	0.2	-3.97	0.80	0.76	—	5.2	0.003	0.64	0.0	0.04	13.45	0.00	1.873	91.46	0.00	9.2	90.8	0.0	-1.29	1.07	0.79	0.78	—	30378	3462	6	0	0	0	2610	logfile
✔	6JPQ	9870	2023-02-26	2019-03-27	4.44	5.93	—	7.2	0.006	1.13	0.0	0.06	12.18	0.01	2.195	10.45	0.57	9.1	90.9	0.0	-5.01	0.81	0.77	—	6.0	0.003	0.82	0.0	0.05	12.81	0.01	2.088	22.73	0.00	8.6	91.4	0.0	-2.15	1.79	0.82	0.80	—	27768	3462	6	0	0	0	0	logfile
✘	6JPB	9869	2023-02-24	2019-03-26	2.9	3.09	—	3.1	0.015	1.47	3.0	0.12	14.12	0.01	1.739	21.16	4.38	8.5	91.1	0.4	-4.25	0.61	0.77	2.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21989	2694	14	0	35	0	0	logfile
✘	6JPA	9868	2023-02-24	2019-03-26	2.6	2.76	—	2.8	0.013	1.50	3.0	0.12	17.43	0.01	1.921	38.35	11.40	8.8	89.5	1.7	-3.83	0.54	0.61	1.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22232	2694	14	0	42	0	0	logfile
✘	6JP8	9867	2023-02-24	2019-03-26	2.7	2.51	—	2.6	0.013	1.46	8.0	0.12	14.43	0.01	1.877	25.96	6.07	7.2	92.3	0.5	-4.05	0.38	0.52	1.99	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21801	2694	14	0	29	0	0	logfile
✘	6JP5	9866	2023-02-24	2019-03-25	2.9	3.03	—	3.1	0.016	1.53	4.0	0.12	14.51	0.01	1.921	28.81	6.11	7.7	91.7	0.6	-3.65	0.56	0.62	2.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22068	2694	14	0	39	0	0	logfile
✔	6JNF	9851	2023-02-18	2019-03-14	3.81	3.96	3.73	4.0	0.009	1.23	0.0	0.06	17.14	0.01	2.304	5.10	1.02	16.7	83.3	0.0	-6.16	0.64	0.82	1.38	4.0	0.003	0.91	0.0	0.05	17.91	0.00	2.133	11.10	0.64	10.5	89.5	0.0	-2.83	1.47	0.67	0.82	1.30	7271	924	11	0	1	0	0	logfile
✔	6JMR	9850	2023-02-19	2019-03-13	4.1	4.26	4.05	4.1	0.006	1.05	0.0	0.06	14.01	0.01	2.239	7.77	0.56	7.1	92.8	0.1	-4.07	0.83	0.78	—	4.1	0.005	0.75	0.0	0.05	13.32	0.01	2.065	16.68	0.00	7.5	92.5	0.0	-2.07	0.78	0.84	0.79	—	9809	1223	7	0	69	0	0	logfile
✔	6JMQ	9849	2023-02-19	2019-03-13	3.31	3.52	3.25	3.5	0.005	0.95	0.0	0.05	14.01	0.01	2.293	3.84	0.29	4.3	95.6	0.1	-5.09	0.71	0.79	2.84	3.5	0.004	0.71	0.0	0.04	15.56	0.00	2.049	8.75	0.29	4.5	95.5	0.0	-1.48	1.46	0.74	0.83	2.73	9950	1223	7	0	74	0	0	logfile
✔	6Ji1	9832	2023-02-21	2019-02-19	4.1	4.20	—	4.1	0.010	1.26	0.0	0.06	11.77	0.01	2.250	7.50	0.57	11.2	83.5	5.3	-4.78	0.61	0.71	—	4.1	0.004	0.82	0.0	0.04	12.95	0.01	2.136	13.76	0.00	9.5	89.9	0.7	-1.24	0.85	0.58	0.72	—	13992	1848	4	0	0	0	0	logfile
✔	6JD1	9801	2023-02-24	2019-01-30	3.38	4.55	—	3.9	0.013	1.00	0.0	0.05	14.90	0.00	2.005	6.39	0.00	7.3	92.7	0.0	-4.95	0.85	0.70	1.18	4.0	0.005	0.66	0.0	0.04	15.75	0.00	1.770	17.72	0.50	8.6	91.4	0.0	-2.50	1.31	0.88	0.85	1.75	63427	3953	36	0	60	192	31469	logfile
✔	6JCZ	9800	2023-02-24	2019-01-30	3.35	4.22	—	3.7	0.006	0.81	0.0	0.04	15.49	0.00	1.670	3.80	0.00	6.8	93.2	0.0	-5.41	0.85	0.74	2.43	3.8	0.005	0.68	0.0	0.04	16.54	0.00	1.764	10.95	0.06	6.9	93.1	0.0	-2.78	2.63	0.87	0.85	2.58	63476	3959	36	0	48	99	31525	logfile
✔	6JCW	9799	2023-02-27	2019-01-30	3.04	3.78	—	3.4	0.007	0.88	0.0	0.05	15.38	0.01	2.168	1.88	0.35	6.1	93.9	0.0	-6.55	0.88	0.88	4.46	3.5	0.004	0.68	0.0	0.04	16.33	0.00	2.162	4.95	0.03	3.5	96.5	0.0	-0.07	1.31	0.86	0.89	3.75	30888	3912	36	0	24	100	0	logfile
✘	6JCV	9798	2023-02-27	2019-01-30	2.92	4.05	—	3.7	0.007	0.90	0.0	0.06	13.94	0.01	2.341	4.98	0.00	5.2	94.8	0.0	-5.68	0.87	0.86	3.38	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30876	3912	31	0	24	96	0	logfile
✔	6JC3	9793	2023-02-17	2019-01-28	4.8	4.87	—	4.8	0.010	1.35	2.0	0.07	15.57	0.01	1.512	30.30	3.10	10.1	89.1	0.8	-4.39	0.42	0.78	—	4.7	0.004	0.77	0.0	0.04	13.92	0.00	2.100	14.75	0.00	6.5	93.5	0.0	0.86	4.22	0.43	0.81	—	3154	391	2	6	0	0	0	logfile

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