Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6JT1	9884	2023-07-04	2019-04-08	3.9	4.00	—	3.9	0.004	0.77	0.0	0.04	12.20	0.00	2.212	10.33	4.62	5.8	93.8	0.4	-2.92	0.77	0.81	2.21	3.9	0.003	0.76	0.0	0.04	14.37	0.00	2.123	11.28	0.33	4.3	95.6	0.1	0.34	1.25	0.81	0.82	2.01	8602	1118	2	0	1	0	0	logfile
✔	6JT0	9883	2023-07-04	2019-04-08	4.0	4.28	—	4.0	0.004	0.71	0.0	0.04	12.21	0.00	2.212	11.03	4.73	5.7	93.9	0.4	-2.84	0.85	0.82	—	4.0	0.003	0.86	0.0	0.05	13.73	0.00	2.209	12.74	0.22	5.1	94.9	0.0	0.23	1.67	0.86	0.82	—	8602	1118	2	0	1	0	0	logfile
✘	6JSi	9882	2023-07-06	2019-04-08	4.7	4.70	—	4.6	0.007	1.48	0.0	0.06	15.33	0.01	2.231	10.68	2.42	23.2	72.3	4.5	-6.05	0.64	0.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	62820	5844	9	0	4044	0	0	logfile
✘	6JRS	9880	2023-07-05	2019-04-05	3.7	3.86	—	3.7	0.010	1.08	0.0	0.06	16.39	0.01	2.225	8.77	0.90	12.4	87.2	0.3	-5.87	0.74	0.80	1.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	112168	14652	20	0	24	0	0	logfile
✘	6JRR	9879	2023-07-04	2019-04-05	3.9	4.09	—	3.9	0.010	1.14	4.0	0.06	15.90	0.01	1.827	8.44	0.80	10.2	89.5	0.2	-5.20	0.76	0.81	1.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	109132	14268	12	0	16	0	0	logfile
✔	6JQM	9874	2023-07-14	2019-03-31	3.3	3.54	—	3.5	0.005	0.83	0.0	0.05	10.76	0.01	2.304	5.76	0.06	5.8	94.2	0.0	-4.47	0.76	0.84	3.78	3.5	0.003	0.61	0.0	0.04	14.51	0.00	2.188	10.16	0.09	4.7	95.3	0.0	-1.23	2.69	0.78	0.87	2.95	30936	4068	12	0	6	0	0	logfile
✔	6JQ0	9872	2023-07-12	2019-03-28	3.54	4.12	—	4.0	0.007	1.21	0.0	0.06	16.27	0.01	2.235	4.90	0.63	13.0	86.5	0.5	-5.59	0.69	0.85	1.20	4.0	0.004	0.84	0.0	0.05	17.30	0.01	2.062	9.76	0.43	13.0	86.7	0.3	-2.20	0.54	0.66	0.83	0.99	26917	3323	13	0	20	0	0	logfile
✔	6JPU	9871	2023-07-14	2019-03-28	4.27	5.69	—	6.0	0.007	1.03	0.0	0.06	17.27	0.01	1.984	70.08	9.58	9.8	90.1	0.2	-3.97	0.80	0.76	—	5.2	0.003	0.67	0.0	0.04	13.41	0.00	1.861	100.50	0.00	10.5	89.5	0.0	-1.47	1.12	0.80	0.78	—	30378	3462	6	0	0	0	2610	logfile
✔	6JPQ	9870	2023-07-13	2019-03-27	4.44	5.93	—	7.2	0.006	1.13	0.0	0.06	12.18	0.01	2.195	10.45	0.57	9.1	90.9	0.0	-5.01	0.81	0.77	—	6.0	0.004	0.82	0.0	0.05	12.94	0.01	2.056	29.36	0.00	9.2	90.8	0.0	-2.14	1.80	0.83	0.81	—	27768	3462	6	0	0	0	0	logfile
✘	6JPB	9869	2023-07-10	2019-03-26	2.9	3.09	—	3.1	0.015	1.48	3.0	0.12	13.70	0.01	1.739	21.16	4.38	8.5	91.1	0.4	-4.25	0.61	0.77	2.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21989	2694	14	0	35	0	0	logfile
✘	6JPA	9868	2023-07-10	2019-03-26	2.6	2.76	—	2.8	0.013	1.51	3.0	0.12	17.16	0.01	1.921	38.35	11.40	8.8	89.5	1.7	-3.83	0.54	0.61	1.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22232	2694	14	0	42	0	0	logfile
✘	6JP8	9867	2023-07-10	2019-03-26	2.7	2.51	—	2.6	0.013	1.48	8.0	0.12	14.01	0.01	1.877	25.96	6.07	7.2	92.3	0.5	-4.05	0.38	0.52	1.99	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21801	2694	14	0	29	0	0	logfile
✘	6JP5	9866	2023-07-10	2019-03-25	2.9	3.03	—	3.1	0.016	1.54	4.0	0.13	14.11	0.01	1.921	28.83	6.11	7.7	91.7	0.6	-3.65	0.56	0.62	2.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22068	2694	14	0	39	0	0	logfile
✘	6Jo6	9854	2023-07-19	2019-03-20	2.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	45099	3899	36	0	285	0	0	logfile
✘	6Jo5	9853	2023-07-19	2019-03-20	2.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	48476	4170	40	0	313	0	0	logfile
✔	6JNX	9852	2023-07-15	2019-03-18	4.08	4.16	—	4.1	0.012	1.23	0.0	0.06	16.11	0.01	1.858	11.37	0.90	7.7	92.0	0.3	-3.99	0.61	0.68	—	4.1	0.005	0.79	0.0	0.05	16.88	0.00	1.902	12.21	0.03	7.8	92.1	0.1	-1.21	1.62	0.71	0.80	—	32639	3771	12	144	3	0	0	logfile
✔	6JNF	9851	2023-07-04	2019-03-14	3.81	3.96	3.73	4.0	0.009	1.23	0.0	0.06	17.14	0.01	2.304	5.24	1.02	16.7	83.3	0.0	-6.16	0.64	0.82	1.38	4.0	0.003	0.91	0.0	0.05	17.91	0.00	2.133	11.24	0.64	10.5	89.5	0.0	-2.83	1.47	0.67	0.82	1.30	7271	924	11	0	1	0	0	logfile
✔	6JMR	9850	2023-07-05	2019-03-13	4.1	4.26	4.05	4.1	0.007	1.06	0.0	0.06	14.05	0.01	2.239	7.77	0.56	7.1	92.8	0.1	-4.07	0.83	0.78	—	4.1	0.005	0.78	0.0	0.05	13.20	0.01	2.050	16.89	0.00	8.5	91.5	0.0	-2.29	0.77	0.84	0.79	—	9809	1223	7	0	69	0	0	logfile
✔	6JMQ	9849	2023-07-05	2019-03-13	3.31	3.52	3.25	3.5	0.005	0.96	0.0	0.05	13.84	0.01	2.293	3.84	0.29	4.3	95.6	0.1	-5.09	0.71	0.79	2.84	3.5	0.004	0.72	0.0	0.04	15.38	0.00	2.137	8.85	0.77	4.8	95.2	0.0	-1.38	1.45	0.74	0.83	2.58	9950	1223	7	0	74	0	0	logfile
✔	6JND	9848	2023-07-03	2019-03-14	3.9	3.92	—	3.9	0.006	0.82	0.0	0.05	15.64	0.01	2.316	3.79	11.73	5.8	94.2	0.0	-5.73	0.43	0.77	1.85	3.9	0.004	0.65	0.0	0.05	15.55	0.00	2.233	8.48	0.29	4.3	95.7	0.0	-0.90	1.27	0.48	0.87	2.03	3294	419	1	0	1	0	0	logfile

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