Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DVD	27735	2023-02-23	2022-07-28	4.12	4.71	4.34	4.3	0.004	0.56	0.0	0.05	13.05	0.00	1.932	5.05	0.69	8.0	91.9	0.1	-0.76	0.79	0.74	—	4.3	0.004	0.72	0.0	0.05	12.95	0.00	2.086	12.07	0.00	8.1	91.8	0.1	-1.20	1.74	0.84	0.80	—	20804	2137	83	0	302	0	0	logfile
✔	7JSV	22460	2023-02-24	2020-08-16	3.9	3.98	—	4.0	0.020	2.10	0.0	0.10	13.46	0.01	2.348	6.75	0.00	0.0	100.0	0.0	1.16	0.61	0.80	2.43	4.0	0.003	0.79	0.0	0.04	16.05	0.00	2.148	12.36	0.19	1.0	99.0	0.0	-0.77	0.91	0.64	0.83	2.60	22140	2706	82	0	41	0	0	logfile
✘	7F4V	31455	2023-02-26	2021-06-21	2.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	67641	6336	78	0	453	402	0	logfile
✘	6YP7	10865	2023-02-28	2020-04-15	3.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	71784	7002	77	0	325	0	0	logfile
✔	7VRJ	32100	2023-02-25	2021-10-23	2.81	2.48	—	2.7	0.020	1.87	0.0	0.06	18.07	0.02	2.064	9.39	1.43	2.9	97.1	0.0	1.42	0.68	0.84	3.65	2.7	0.004	0.76	0.0	0.04	18.57	0.00	1.926	6.96	3.18	2.6	97.4	0.0	1.32	0.33	0.68	0.87	3.05	26309	2604	77	0	114	48	0	logfile
✔	6TH3	10502	2023-02-23	2019-11-18	4.0	4.17	4.09	4.0	0.007	1.10	0.0	0.05	10.47	0.01	2.268	4.52	0.00	16.5	83.5	0.0	-5.42	0.64	0.56	—	4.0	0.004	0.85	0.0	0.05	15.42	0.01	2.181	11.71	0.66	13.5	86.5	0.0	-1.92	1.67	0.74	0.78	—	60600	7800	75	0	0	0	0	logfile
✘	7PNK	13548	2023-02-23	2021-09-07	3.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	60673	6142	74	0	250	0	0	logfile
✔	7X9W	33084	2023-02-23	2022-03-16	2.78	2.90	2.88	2.9	0.008	0.84	12.0	0.06	15.86	0.01	2.241	6.77	6.86	3.8	96.2	0.0	-2.46	0.78	0.83	3.91	2.9	0.004	0.64	0.0	0.05	17.40	0.00	2.071	7.91	3.56	2.1	97.9	0.0	-0.73	0.46	0.77	0.84	4.17	59640	7368	72	0	24	48	0	logfile
✔	6M3X	30073	2023-02-23	2020-03-04	2.24	2.31	—	2.3	0.006	0.81	0.0	0.05	13.95	0.01	2.222	3.45	0.37	3.2	96.8	0.0	-2.65	0.78	0.90	7.35	2.3	0.003	0.61	0.0	0.05	16.91	0.00	2.259	5.96	0.73	2.9	97.1	0.0	0.36	0.42	0.78	0.91	6.73	62387	7440	72	0	24	2243	0	logfile
✘	6Z5R	11080	2023-02-25	2020-05-27	2.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25048	2336	72	0	105	3	0	logfile
✔	7LQE	23483	2023-02-17	2021-02-13	3.4	3.06	—	3.4	0.016	1.42	0.0	0.04	20.72	0.00	2.423	23.27	14.58	0.0	100.0	0.0	-5.94	0.57	0.80	5.06	3.2	0.151	5.20	240.0	0.38	25.46	0.02	1.745	134.94	4.40	60.8	38.2	1.0	-8.67	1.67	0.65	0.89	2.25	6048	576	72	0	0	0	0	logfile
✔	6UDJ	20739	2023-02-25	2019-09-19	2.5	2.60	2.46	2.6	0.010	1.02	0.0	0.06	13.38	0.01	2.252	3.09	0.41	4.1	95.8	0.1	-1.93	0.71	0.85	4.78	2.6	0.004	0.64	0.0	0.04	15.38	0.00	2.003	6.52	2.40	3.4	96.6	0.0	-0.05	0.43	0.71	0.86	4.44	26592	3090	72	0	177	45	0	logfile
✔	7C9R	30314	2023-02-27	2020-06-07	2.82	2.97	—	3.0	0.021	3.34	29.0	0.13	21.92	0.02	1.938	7.80	0.43	3.9	96.0	0.1	-0.57	0.76	0.94	4.41	3.0	0.004	1.54	0.0	0.04	20.44	0.00	1.981	5.50	1.05	2.5	97.5	0.0	2.12	0.94	0.72	0.91	3.18	29228	3009	72	0	124	0	0	logfile
✘	6KMX	0727	2023-02-24	2019-08-01	2.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	65112	5919	72	0	363	636	0	logfile
✔	7N65	24195	2023-02-23	2021-06-07	4.15	4.35	—	4.2	0.011	1.18	0.0	0.06	14.11	0.01	1.935	35.99	4.29	15.2	84.6	0.2	-4.44	0.78	0.77	—	4.2	0.005	0.85	0.0	0.05	12.89	0.00	2.103	22.87	0.05	12.1	87.9	0.0	-3.06	0.72	0.77	0.76	—	21525	2454	72	0	189	0	0	logfile
✘	6L4U	0835	2023-02-23	2019-10-21	2.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	62199	5075	72	0	557	156	0	logfile
✔	6MPH	9189	2023-02-28	2018-10-06	3.8	4.28	—	3.9	0.006	0.79	0.0	0.05	12.56	0.01	2.286	6.11	6.01	5.3	94.6	0.2	-3.46	0.84	0.85	2.34	3.9	0.003	0.71	0.0	0.04	14.13	0.00	2.014	14.18	0.15	5.4	94.6	0.0	-1.14	0.75	0.84	0.86	1.98	32092	3843	72	0	155	0	0	logfile
✘	7VoY	32062	2023-02-24	2021-10-15	4.2	3.14	—	3.1	0.009	0.97	0.0	0.10	14.41	0.01	2.056	16.15	1.25	4.6	95.4	0.0	0.99	0.45	0.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22119	2479	71	0	44	0	0	logfile
✔	7V31	31649	2023-02-26	2021-08-10	2.9	2.99	—	3.0	0.007	0.90	11.0	0.05	15.74	0.01	1.681	10.59	0.36	3.4	96.5	0.1	0.59	0.79	0.87	3.49	3.0	0.003	0.57	0.0	0.04	16.83	0.00	2.081	7.16	1.41	3.7	96.3	0.0	0.96	0.37	0.78	0.88	3.06	68204	8269	71	0	47	0	0	logfile
✔	6ZKD	11245	2023-02-26	2020-06-30	2.7	2.83	—	2.7	0.008	1.02	0.0	1.03	11.89	0.01	2.196	5.23	0.06	3.4	96.6	0.0	-2.68	0.77	0.87	4.54	2.7	0.009	1.59	0.0	0.31	15.81	0.00	1.476	10.67	1.60	3.1	96.9	0.0	0.70	1.61	0.78	0.89	3.76	67450	8160	71	0	46	0	0	logfile

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