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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7CKB | 30384 | 2023-08-12 | 2020-07-16 | 3.24 | 3.29 | — | 3.2 | 0.008 | 0.88 | 0.0 | 0.05 | 16.33 | 0.01 | 2.160 | 6.96 | 1.05 | 4.0 | 96.0 | 0.0 | -0.87 | 0.85 | 0.88 | 2.17 | 3.2 | 0.006 | 0.72 | 0.0 | 0.05 | 17.10 | 0.00 | 2.145 | 7.26 | 1.43 | 2.5 | 97.5 | 0.0 | -0.14 | 0.28 | 0.85 | 0.90 | 2.74 | 114840 | 15840 | 180 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UJL | 26566 | 2023-08-21 | 2022-03-31 | 3.3 | 3.53 | 3.27 | 3.4 | 0.015 | 2.11 | 120.0 | 0.14 | 20.03 | 0.02 | 1.760 | 6.20 | 0.00 | 5.1 | 94.9 | 0.0 | -1.45 | 0.58 | 0.70 | 1.54 | 3.4 | 0.005 | 0.68 | 0.0 | 0.04 | 20.75 | 0.00 | 2.168 | 6.61 | 0.50 | 3.2 | 96.8 | 0.0 | 0.28 | 1.05 | 0.68 | 0.92 | 3.63 | 86820 | 9660 | 180 | 480 | 0 | 0 | 0 | logfile |
✔ | 6RRS | 4989 | 2023-08-23 | 2019-05-20 | 3.9 | 4.30 | 4.41 | 3.8 | 0.013 | 2.10 | 0.0 | 0.00 | 2.04 | 0.01 | 2.364 | 0.79 | 0.00 | 3.9 | 95.3 | 0.8 | -0.85 | 0.56 | 0.64 | — | 3.8 | 0.004 | 0.84 | 0.0 | 0.00 | 7.15 | 0.00 | 2.195 | 1.79 | 0.00 | 15.0 | 85.0 | 0.0 | -1.14 | 2.03 | 0.80 | 0.71 | — | 93060 | 23220 | 180 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JAU | 6366 | 2023-08-12 | 2015-06-24 | 4.8 | 4.76 | — | 6.0 | 0.027 | 2.66 | 660.0 | 0.16 | 14.74 | 0.02 | 1.686 | 10.72 | 1.90 | 4.6 | 94.1 | 1.3 | -2.16 | 0.21 | 0.38 | — | 5.4 | 0.003 | 0.70 | 0.0 | 0.04 | 13.62 | 0.00 | 2.034 | 12.63 | 0.00 | 4.6 | 95.0 | 0.4 | -1.07 | 1.45 | 0.24 | 0.57 | — | 114900 | 14700 | 180 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VEA | 31944 | 2023-08-11 | 2021-09-08 | 3.7 | 3.55 | — | 3.5 | 0.009 | 1.13 | 0.0 | 0.04 | 13.48 | 0.00 | 2.098 | 6.48 | 0.58 | 1.5 | 98.4 | 0.0 | 2.51 | 0.65 | 0.78 | 1.44 | 3.5 | 0.004 | 0.77 | 0.0 | 0.04 | 16.55 | 0.00 | 2.063 | 15.67 | 0.57 | 2.2 | 97.7 | 0.0 | 2.25 | 1.43 | 0.69 | 0.77 | 1.04 | 111542 | 15594 | 165 | 0 | 84 | 0 | 0 | logfile |
✔ | 7SC9 | 25030 | 2023-08-13 | 2021-09-27 | 2.6 | 3.71 | 2.70 | 3.0 | 0.005 | 0.63 | 0.0 | 0.04 | 13.52 | 0.01 | 2.039 | 38.58 | 0.01 | 2.7 | 97.2 | 0.0 | 2.39 | 0.80 | 0.82 | 1.56 | 3.0 | 0.004 | 0.81 | 0.0 | 0.04 | 16.15 | 0.00 | 2.009 | 19.29 | 1.89 | 2.8 | 97.1 | 0.1 | 1.36 | 0.60 | 0.80 | 0.84 | 1.23 | 117262 | 14948 | 164 | 0 | 76 | 0 | 0 | logfile |
✔ | 7SC7 | 25028 | 2023-08-09 | 2021-09-27 | 2.8 | 3.66 | — | 3.3 | 0.007 | 1.08 | 1.0 | 0.06 | 14.67 | 0.01 | 2.240 | 6.50 | 1.49 | 2.4 | 97.6 | 0.0 | -1.25 | 0.73 | 0.87 | 1.85 | 3.2 | 0.005 | 0.99 | 1.0 | 0.05 | 16.95 | 0.01 | 1.998 | 23.67 | 2.66 | 3.2 | 96.8 | 0.0 | 0.75 | 0.70 | 0.72 | 0.88 | 1.52 | 107930 | 13756 | 156 | 0 | 72 | 0 | 0 | logfile |
✔ | 5LEG | 4042 | 2023-08-25 | 2016-06-29 | 3.6 | 3.32 | — | 3.8 | 0.012 | 1.21 | 0.0 | 0.04 | 17.49 | 0.00 | 2.383 | 44.75 | 0.00 | 8.2 | 91.8 | 0.0 | -5.72 | 0.71 | 0.75 | 3.30 | 3.3 | 0.003 | 0.75 | 0.0 | 0.04 | 16.03 | 0.00 | 2.162 | 11.32 | 0.55 | 4.5 | 95.5 | 0.0 | -1.18 | 1.55 | 0.71 | 0.83 | 1.94 | 41355 | 5040 | 155 | 0 | 75 | 0 | 0 | logfile |
✔ | 6WL7 | 21816 | 2023-08-22 | 2020-04-18 | 3.8 | 4.18 | — | 3.9 | 0.006 | 0.58 | 0.0 | 0.04 | 14.93 | 0.00 | 2.204 | 8.50 | 0.00 | 1.2 | 98.8 | 0.0 | 3.28 | 0.79 | 0.87 | 2.36 | 3.9 | 0.005 | 0.97 | 0.0 | 0.04 | 17.47 | 0.00 | 2.173 | 14.78 | 2.10 | 0.0 | 100.0 | 0.0 | 4.93 | 1.01 | 0.79 | 0.86 | 1.94 | 34350 | 4350 | 150 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LQH | 23486 | 2023-08-12 | 2021-02-13 | 3.4 | 3.12 | — | 3.4 | 0.016 | 1.42 | 0.0 | 0.04 | 20.72 | 0.00 | 2.098 | 31.15 | 14.58 | 0.0 | 100.0 | 0.0 | -5.94 | 0.59 | 0.80 | 5.83 | 3.2 | 0.111 | 4.25 | 190.0 | 0.31 | 24.04 | 0.02 | 1.610 | 112.99 | 4.28 | 40.1 | 59.5 | 0.3 | -8.01 | 3.50 | 0.66 | 0.87 | 3.32 | 12096 | 1152 | 144 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LQG | 23485 | 2023-08-12 | 2021-02-13 | 3.4 | 3.13 | — | 3.3 | 0.016 | 1.42 | 0.0 | 0.04 | 20.72 | 0.00 | 1.842 | 31.02 | 14.58 | 0.0 | 100.0 | 0.0 | -5.94 | 0.61 | 0.81 | 5.57 | 3.1 | 0.110 | 4.37 | 186.0 | 0.30 | 23.67 | 0.02 | 1.819 | 120.04 | 3.70 | 35.6 | 64.4 | 0.0 | -8.04 | 1.65 | 0.66 | 0.86 | 3.86 | 12096 | 1152 | 144 | 0 | 0 | 0 | 0 | logfile |
✘ | 7VD5 | 31905 | 2023-08-25 | 2021-09-06 | 2.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 100884 | 9450 | 143 | 0 | 670 | 52 | 0 | logfile |
✔ | 8CUE | 26999 | 2023-08-24 | 2022-05-17 | 3.2 | 3.57 | 3.25 | 3.7 | 0.010 | 1.82 | 0.0 | 0.04 | 21.60 | 0.00 | 2.541 | 2.88 | 0.00 | 1.5 | 98.5 | 0.0 | 0.78 | 0.73 | 0.83 | 2.63 | 3.6 | 0.004 | 0.49 | 0.0 | 0.03 | 15.91 | 0.00 | 2.304 | 6.89 | 0.21 | 0.3 | 99.7 | 0.0 | 2.13 | 0.62 | 0.69 | 0.84 | 2.47 | 37240 | 4900 | 140 | 0 | 70 | 0 | 0 | logfile |
✘ | 5XNL | 6741 | 2023-08-24 | 2017-05-23 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 98986 | 9364 | 136 | 0 | 490 | 1076 | 0 | logfile |
✘ | 7Pi0 | 13429 | 2023-08-19 | 2021-08-19 | 2.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 77465 | 7442 | 133 | 0 | 354 | 1724 | 0 | logfile |
✔ | 8Bi4 | 16076 | 2023-08-28 | 2022-11-01 | 4.3 | 4.52 | 4.39 | 4.5 | 0.004 | 0.97 | 0.0 | 0.05 | 11.50 | 0.01 | 0.452 | 10.80 | 0.14 | 4.0 | 95.6 | 0.3 | -0.49 | 0.64 | 0.81 | — | 4.5 | 0.006 | 0.86 | 0.0 | 0.05 | 13.52 | 0.01 | 2.057 | 10.58 | 0.04 | 5.4 | 94.6 | 0.0 | -0.63 | 1.65 | 0.65 | 0.84 | — | 145200 | 19404 | 132 | 0 | 0 | 0 | 0 | logfile |
✘ | 6KAC | 9955 | 2023-08-19 | 2019-06-21 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 77947 | 7858 | 126 | 0 | 318 | 595 | 0 | logfile |
✔ | 7VA9 | 31835 | 2023-08-25 | 2021-08-27 | 3.08 | 2.58 | — | 2.9 | 0.020 | 2.12 | 0.0 | 0.05 | 18.34 | 0.05 | 1.992 | 15.64 | 2.83 | 2.3 | 97.7 | 0.0 | 1.34 | 0.60 | 0.79 | 3.23 | 2.8 | 0.006 | 0.85 | 0.0 | 0.04 | 17.68 | 0.01 | 1.729 | 8.54 | 0.33 | 2.1 | 97.9 | 0.0 | 1.97 | 0.54 | 0.64 | 0.84 | 3.34 | 42176 | 4350 | 124 | 0 | 131 | 0 | 0 | logfile |
✘ | 7UMH | 26601 | 2023-08-24 | 2022-04-07 | 2.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 140516 | 12747 | 124 | 0 | 798 | 461 | 0 | logfile |
✘ | 7Pi5 | 13430 | 2023-08-18 | 2021-08-19 | 2.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 76287 | 7455 | 123 | 0 | 343 | 718 | 0 | logfile |