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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7R4G | 14307 | 2023-12-09 | 2022-02-08 | 2.5 | 2.48 | — | 2.5 | 0.008 | 0.81 | 0.0 | 0.86 | 16.79 | 0.01 | 1.869 | 4.23 | 0.03 | 3.2 | 96.8 | 0.0 | -0.01 | 0.70 | 0.89 | 5.55 | 2.5 | 0.007 | 1.33 | 0.0 | 0.26 | 16.69 | 0.00 | 2.155 | 5.04 | 0.79 | 2.0 | 97.9 | 0.0 | 1.35 | 0.79 | 0.70 | 0.90 | 4.67 | 65153 | 7802 | 111 | 0 | 47 | 851 | 0 | logfile |
✘ | 7D1T | 30547 | 2023-12-07 | 2020-09-15 | 1.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 52994 | 5312 | 108 | 0 | 196 | 2432 | 0 | logfile |
✘ | 5GUP | 9539 | 2023-12-08 | 2016-08-30 | 4.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 109982 | 13895 | 107 | 0 | 77 | 0 | 0 | logfile |
✔ | 7PWG | 13681 | 2023-12-08 | 2021-10-06 | 2.75 | 2.35 | — | 2.5 | 0.010 | 1.07 | 0.0 | 0.06 | 23.36 | 0.02 | 1.376 | 3.78 | 6.08 | 4.4 | 95.6 | 0.0 | -2.19 | 0.76 | 0.88 | 4.64 | 2.6 | 0.004 | 0.77 | 0.0 | 0.04 | 23.32 | 0.01 | 1.775 | 4.37 | 3.62 | 3.2 | 96.8 | 0.0 | -0.24 | 0.30 | 0.76 | 0.87 | 3.92 | 109151 | 5769 | 105 | 2722 | 294 | 4397 | 0 | logfile |
✔ | 6WKX | 21812 | 2023-12-10 | 2020-04-17 | 4.2 | 4.31 | — | 4.2 | 0.006 | 0.59 | 0.0 | 0.04 | 15.11 | 0.00 | 2.298 | 2.52 | 0.00 | 0.0 | 100.0 | 0.0 | -3.67 | 0.77 | 0.90 | — | 4.2 | 0.003 | 0.66 | 0.0 | 0.04 | 16.29 | 0.00 | 2.237 | 9.35 | 0.00 | 0.1 | 99.9 | 0.0 | 4.37 | 1.00 | 0.77 | 0.89 | — | 12915 | 1575 | 105 | 0 | 0 | 0 | 0 | logfile |
✘ | 7DGR | 30674 | 2023-12-07 | 2020-11-12 | 4.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 107305 | 13811 | 102 | 0 | 37 | 0 | 0 | logfile |
✔ | 7XM1 | 33289 | 2023-12-08 | 2022-04-24 | 3.96 | 3.41 | 3.91 | 4.0 | 0.002 | 0.43 | 0.0 | 0.04 | 15.16 | 0.00 | 2.503 | 2.22 | 0.00 | 3.3 | 96.7 | 0.0 | 2.33 | 0.73 | 0.81 | 1.85 | 3.9 | 0.003 | 0.56 | 0.0 | 0.04 | 18.87 | 0.00 | 2.214 | 4.30 | 0.31 | 3.3 | 96.7 | 0.0 | 2.60 | 0.65 | 0.74 | 0.83 | 1.49 | 60240 | 7380 | 101 | 0 | 60 | 0 | 0 | logfile |
✔ | 7LQi | 23487 | 2023-12-08 | 2021-02-13 | 3.5 | 3.92 | — | 3.9 | 0.016 | 1.40 | 0.0 | 0.03 | 20.42 | 0.00 | 2.242 | 22.86 | 5.00 | 0.0 | 100.0 | 0.0 | -3.42 | 0.62 | 0.78 | 4.80 | 3.9 | 0.051 | 2.84 | 5.0 | 0.14 | 22.95 | 0.01 | 1.918 | 120.77 | 3.33 | 46.5 | 53.5 | 0.0 | -7.05 | 1.54 | 0.65 | 0.83 | 2.52 | 8400 | 800 | 100 | 0 | 0 | 0 | 0 | logfile |
✘ | 2XEA | 1730 | 2023-12-09 | 2010-05-12 | 4.6 | 4.10 | — | 4.2 | 0.012 | 2.12 | 0.0 | 0.12 | 20.75 | 0.02 | 1.226 | 2.63 | 3.68 | 8.6 | 90.1 | 1.3 | -3.51 | 0.39 | 0.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62671 | 7546 | 98 | 147 | 0 | 0 | 0 | logfile |
✔ | 7Q2S | 13782 | 2023-12-09 | 2021-10-26 | 3.7 | 3.23 | — | 3.3 | 0.010 | 1.40 | 0.0 | 0.08 | 12.76 | 0.01 | 1.217 | 18.46 | 0.00 | 8.6 | 90.7 | 0.7 | -4.24 | 0.45 | 0.63 | 1.80 | 3.2 | 0.005 | 0.90 | 0.0 | 0.04 | 18.34 | 0.00 | 1.969 | 19.51 | 1.06 | 6.9 | 93.1 | 0.0 | -2.70 | 1.12 | 0.52 | 0.69 | 2.13 | 62377 | 7497 | 98 | 147 | 0 | 0 | 0 | logfile |
✔ | 3J06 | 5185 | 2023-12-09 | 2011-04-26 | 3.3 | 2.88 | — | 3.5 | 0.011 | 2.34 | 441.0 | 0.15 | 21.41 | 0.01 | 1.607 | 79.64 | 14.71 | 21.1 | 65.4 | 13.5 | -7.24 | 0.56 | 0.80 | 1.90 | 3.0 | 0.004 | 0.92 | 0.0 | 0.04 | 20.79 | 0.01 | 2.088 | 17.33 | 1.28 | 8.8 | 89.8 | 1.5 | -2.84 | 1.27 | 0.55 | 0.79 | 2.18 | 62916 | 7595 | 98 | 147 | 0 | 0 | 0 | logfile |
✔ | 7Q2Q | 13780 | 2023-12-09 | 2021-10-26 | 4.3 | 3.37 | — | 3.6 | 0.010 | 1.40 | 0.0 | 0.08 | 12.77 | 0.01 | 1.166 | 18.08 | 0.00 | 8.5 | 90.7 | 0.8 | -4.23 | 0.58 | 0.71 | — | 3.3 | 0.005 | 0.75 | 0.0 | 0.04 | 15.30 | 0.01 | 2.021 | 14.01 | 0.21 | 5.4 | 94.6 | 0.0 | -1.58 | 1.52 | 0.60 | 0.75 | — | 62377 | 7497 | 98 | 147 | 0 | 0 | 0 | logfile |
✔ | 7UUQ | 26800 | 2023-12-07 | 2022-04-28 | 3.1 | 3.45 | 2.98 | 3.3 | 0.018 | 1.82 | 0.0 | 0.06 | 18.29 | 0.01 | 1.865 | 20.35 | 0.00 | 0.0 | 100.0 | 0.0 | -9.31 | 0.68 | 0.85 | 2.95 | 3.3 | 0.118 | 4.56 | 11.0 | 0.23 | 30.56 | 0.02 | 1.630 | 55.02 | 2.47 | 64.9 | 32.1 | 3.0 | -10.63 | 0.67 | 0.73 | 0.90 | 3.19 | 4760 | 364 | 98 | 0 | 98 | 0 | 0 | logfile |
✔ | 6YJ4 | 10815 | 2023-12-10 | 2020-04-02 | 2.7 | 2.35 | 2.73 | 2.6 | 0.011 | 1.10 | 0.0 | 0.65 | 17.24 | 0.01 | 2.031 | 2.88 | 0.03 | 4.1 | 95.8 | 0.0 | -2.17 | 0.58 | 0.79 | 4.22 | 2.5 | 0.005 | 1.04 | 0.0 | 0.18 | 17.23 | 0.00 | 1.396 | 7.05 | 1.62 | 3.4 | 96.6 | 0.0 | 0.71 | 0.58 | 0.63 | 0.84 | 3.74 | 66311 | 8126 | 94 | 0 | 50 | 275 | 0 | logfile |
✔ | 6Q16 | 20556 | 2023-12-10 | 2019-08-02 | 4.1 | 4.11 | — | 4.1 | 0.007 | 1.05 | 0.0 | 0.06 | 14.24 | 0.01 | 2.214 | 3.99 | 0.67 | 3.6 | 96.4 | 0.0 | -5.13 | 0.85 | 0.83 | — | 4.1 | 0.003 | 0.69 | 0.0 | 0.04 | 13.91 | 0.00 | 2.101 | 9.20 | 0.01 | 3.7 | 96.3 | 0.0 | -0.13 | 0.76 | 0.86 | 0.84 | — | 118198 | 14787 | 93 | 0 | 0 | 0 | 0 | logfile |
✘ | 7WG5 | 32477 | 2023-12-08 | 2021-12-28 | 3.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 112687 | 11759 | 92 | 0 | 545 | 0 | 0 | logfile |
✔ | 7JJJ | 22354 | 2023-12-08 | 2020-07-26 | 4.5 | 4.63 | 4.47 | 4.5 | 0.020 | 1.79 | 0.0 | 0.13 | 9.67 | 0.01 | 2.377 | 0.90 | 0.07 | 2.0 | 98.0 | 0.0 | 0.68 | 0.79 | 0.80 | — | 4.5 | 0.003 | 0.65 | 0.0 | 0.05 | 11.50 | 0.00 | 2.146 | 10.10 | 0.00 | 3.5 | 96.5 | 0.0 | 0.13 | 1.43 | 0.79 | 0.82 | — | 54614 | 6674 | 92 | 0 | 182 | 0 | 0 | logfile |
✔ | 6RD4 | 4805 | 2023-12-07 | 2019-04-12 | 2.9 | 2.95 | — | 2.9 | 0.014 | 1.11 | 0.0 | 0.07 | 14.33 | 0.01 | 0.776 | 6.62 | 0.69 | 4.7 | 95.0 | 0.2 | -5.13 | 0.74 | 0.83 | 3.17 | 2.9 | 0.003 | 0.67 | 0.0 | 0.04 | 16.46 | 0.00 | 1.908 | 10.07 | 1.91 | 3.4 | 96.5 | 0.1 | 0.82 | 0.65 | 0.77 | 0.87 | 2.72 | 107552 | 14206 | 82 | 0 | 22 | 56 | 0 | logfile |
✘ | 7F9o | 31498 | 2023-12-10 | 2021-07-04 | 4.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 106329 | 11553 | 82 | 0 | 461 | 0 | 0 | logfile |
✘ | 8oiT | 16899 | 2023-12-09 | 2023-03-23 | 2.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 113095 | 9412 | 79 | 1704 | 265 | 0 | 0 | logfile |