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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7V2L | 31655 | 2023-02-21 | 2021-08-09 | 3.3 | 3.14 | 3.24 | 3.1 | 0.008 | 1.07 | 1.0 | 0.10 | 16.30 | 0.00 | 2.214 | 5.68 | 0.09 | 6.7 | 93.1 | 0.2 | -0.61 | 0.78 | 0.87 | 2.42 | 3.1 | 0.003 | 0.56 | 0.0 | 0.03 | 16.73 | 0.00 | 2.080 | 8.24 | 0.32 | 7.0 | 92.9 | 0.1 | -0.28 | 0.24 | 0.79 | 0.88 | 2.06 | 53410 | 2621 | 24 | 1507 | 2 | 0 | 0 | logfile |
✔ | 5XYi | 6788 | 2023-02-24 | 2017-07-08 | 3.35 | 3.41 | — | 3.4 | 0.007 | 1.11 | 5.0 | 0.09 | 18.00 | 0.00 | 1.113 | 14.15 | 5.14 | 8.3 | 89.0 | 2.7 | -3.65 | 0.63 | 0.70 | 1.75 | 3.4 | 0.011 | 0.93 | 0.0 | 0.05 | 17.63 | 0.01 | 2.004 | 13.02 | 1.71 | 9.1 | 90.0 | 1.0 | -1.65 | 1.55 | 0.79 | 0.85 | 1.45 | 65924 | 4368 | 34 | 1490 | 0 | 0 | 0 | logfile |
✔ | 7V2o | 31658 | 2023-02-21 | 2021-08-09 | 3.5 | 3.22 | 3.31 | 3.0 | 0.008 | 1.12 | 2.0 | 0.10 | 16.74 | 0.00 | 2.203 | 6.79 | 0.18 | 5.3 | 94.5 | 0.2 | -0.53 | 0.81 | 0.84 | 2.00 | 3.0 | 0.006 | 0.68 | 0.0 | 0.04 | 17.20 | 0.01 | 2.071 | 11.50 | 0.41 | 6.4 | 93.5 | 0.1 | -0.38 | 0.37 | 0.80 | 0.83 | 1.99 | 53005 | 2624 | 24 | 1487 | 2 | 0 | 0 | logfile |
✔ | 7V2M | 31656 | 2023-02-22 | 2021-08-09 | 3.4 | 3.28 | 3.35 | 3.1 | 0.008 | 1.15 | 3.0 | 0.11 | 16.39 | 0.00 | 2.232 | 6.24 | 0.33 | 6.5 | 93.2 | 0.3 | -0.70 | 0.80 | 0.86 | 2.18 | 3.1 | 0.005 | 0.65 | 0.0 | 0.04 | 16.95 | 0.00 | 2.055 | 11.12 | 0.49 | 6.9 | 93.0 | 0.0 | -0.33 | 0.32 | 0.80 | 0.87 | 2.02 | 55229 | 2909 | 25 | 1486 | 2 | 0 | 0 | logfile |
✔ | 6TMF | 10519 | 2023-02-24 | 2019-12-04 | 2.8 | 2.90 | — | 2.8 | 0.017 | 1.11 | 2.0 | 0.07 | 15.95 | 0.01 | 1.750 | 4.72 | 0.73 | 9.5 | 90.0 | 0.5 | -3.66 | 0.85 | 0.85 | 3.51 | 2.8 | 0.005 | 0.68 | 0.0 | 0.04 | 16.94 | 0.01 | 1.856 | 9.84 | 3.28 | 7.5 | 92.4 | 0.1 | -0.65 | 2.23 | 0.88 | 0.89 | 2.84 | 65449 | 4172 | 35 | 1485 | 37 | 0 | 0 | logfile |
✔ | 5MMJ | 3532 | 2023-02-22 | 2016-12-10 | 3.6 | 3.88 | — | 3.6 | 0.008 | 1.15 | 0.0 | 0.05 | 16.66 | 0.01 | 1.774 | 10.61 | 7.28 | 4.9 | 94.8 | 0.3 | -3.46 | 0.92 | 0.86 | 1.28 | 3.6 | 0.005 | 0.71 | 0.0 | 0.04 | 16.28 | 0.01 | 1.334 | 19.31 | 1.26 | 5.4 | 94.4 | 0.1 | -0.53 | 1.60 | 0.91 | 0.85 | 1.05 | 55315 | 2806 | 31 | 1484 | 359 | 0 | 0 | logfile |
✔ | 7WTS | 32799 | 2023-02-23 | 2022-02-05 | 3.2 | 3.07 | — | 3.0 | 0.005 | 0.85 | 0.0 | 0.05 | 16.37 | 0.01 | 2.076 | 5.07 | 0.09 | 3.8 | 96.2 | 0.0 | -1.00 | 0.75 | 0.75 | 2.70 | 3.0 | 0.007 | 0.76 | 0.0 | 0.04 | 16.96 | 0.01 | 2.057 | 9.88 | 0.46 | 4.5 | 95.5 | 0.0 | 0.08 | 0.38 | 0.77 | 0.77 | 2.58 | 61945 | 3777 | 23 | 1481 | 0 | 0 | 0 | logfile |
✔ | 5X8R | 6710 | 2023-02-22 | 2017-03-03 | 3.7 | 3.88 | — | 3.8 | 0.012 | 1.32 | 8.0 | 0.06 | 14.80 | 0.01 | 1.255 | 12.16 | 1.03 | 12.1 | 86.8 | 1.1 | -4.16 | 0.77 | 0.74 | 1.22 | 3.7 | 0.004 | 0.76 | 0.0 | 0.04 | 16.05 | 0.01 | 2.013 | 19.81 | 1.14 | 12.4 | 87.2 | 0.4 | -2.36 | 1.33 | 0.81 | 0.83 | 0.98 | 55412 | 2969 | 26 | 1480 | 0 | 0 | 0 | logfile |
✘ | 4CE4 | 2490 | 2023-02-24 | 2013-11-08 | 4.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65473 | 3572 | 40 | 1437 | 984 | 0 | 0 | logfile |
✔ | 8C00 | 16347 | 2023-02-23 | 2022-12-15 | 2.9 | 3.49 | — | 2.8 | 0.007 | 0.82 | 0.0 | 0.06 | 14.52 | 0.01 | 2.091 | 3.28 | 0.84 | 3.4 | 96.3 | 0.3 | -0.72 | 0.88 | 0.89 | 3.72 | 2.8 | 0.003 | 0.63 | 0.0 | 0.04 | 14.64 | 0.00 | 2.140 | 6.41 | 1.31 | 3.1 | 96.8 | 0.1 | 0.49 | 1.10 | 0.88 | 0.89 | 2.77 | 63117 | 4186 | 26 | 1425 | 0 | 0 | 0 | logfile |
✔ | 7V2Q | 31660 | 2023-02-21 | 2021-08-09 | 3.24 | 3.12 | 3.13 | 3.0 | 0.008 | 1.14 | 2.0 | 0.10 | 15.54 | 0.00 | 2.189 | 6.75 | 0.16 | 6.4 | 93.6 | 0.1 | -1.01 | 0.82 | 0.86 | 1.80 | 2.9 | 0.006 | 0.70 | 0.0 | 0.04 | 16.49 | 0.01 | 2.111 | 10.94 | 0.62 | 6.6 | 93.3 | 0.0 | -0.43 | 1.48 | 0.82 | 0.88 | 2.05 | 52904 | 2875 | 25 | 1391 | 2 | 0 | 0 | logfile |
✔ | 7PWF | 13680 | 2023-02-23 | 2021-10-06 | 2.85 | 2.33 | — | 2.5 | 0.007 | 0.98 | 0.0 | 0.07 | 17.37 | 0.03 | 1.748 | 7.23 | 0.09 | 5.3 | 94.5 | 0.2 | -2.09 | 0.68 | 0.81 | 3.26 | 2.5 | 0.003 | 0.81 | 0.0 | 0.04 | 17.75 | 0.01 | 1.947 | 6.48 | 2.80 | 4.9 | 95.0 | 0.1 | -1.17 | 0.92 | 0.68 | 0.81 | 2.89 | 60466 | 3965 | 45 | 1355 | 303 | 0 | 0 | logfile |
✔ | 7WTR | 32796 | 2023-02-21 | 2022-02-05 | 3.5 | 3.44 | — | 3.3 | 0.006 | 0.88 | 0.0 | 0.05 | 16.48 | 0.01 | 2.080 | 6.30 | 0.00 | 7.2 | 92.7 | 0.1 | -3.07 | 0.84 | 0.83 | 2.34 | 3.3 | 0.003 | 0.61 | 0.0 | 0.04 | 16.83 | 0.00 | 2.087 | 10.88 | 0.25 | 7.4 | 92.6 | 0.0 | -0.98 | 1.13 | 0.83 | 0.83 | 1.82 | 53512 | 3259 | 20 | 1298 | 1 | 0 | 0 | logfile |
✔ | 7WTP | 32794 | 2023-02-21 | 2022-02-05 | 3.8 | 3.62 | — | 3.4 | 0.007 | 0.96 | 0.0 | 0.05 | 16.68 | 0.01 | 2.103 | 8.20 | 0.04 | 8.7 | 91.1 | 0.1 | -2.27 | 0.83 | 0.82 | 1.74 | 3.4 | 0.007 | 0.79 | 0.0 | 0.04 | 17.20 | 0.01 | 2.000 | 15.90 | 0.60 | 9.7 | 90.2 | 0.1 | -1.46 | 0.37 | 0.83 | 0.82 | 1.42 | 52944 | 3296 | 20 | 1255 | 1 | 0 | 0 | logfile |
✔ | 5AJ3 | 2913 | 2023-02-25 | 2015-02-20 | 3.6 | 3.73 | — | 3.7 | 0.018 | 1.28 | 0.0 | 0.05 | 18.85 | 0.07 | 1.844 | 24.00 | 10.71 | 3.9 | 96.0 | 0.1 | -3.65 | 0.86 | 0.86 | 2.03 | 3.6 | 0.004 | 1.41 | 0.0 | 0.04 | 19.14 | 0.02 | 1.819 | 16.05 | 0.59 | 4.7 | 95.3 | 0.0 | 0.16 | 1.64 | 0.84 | 0.82 | 1.63 | 66363 | 4665 | 44 | 1102 | 1006 | 118 | 0 | logfile |
✔ | 7oi0 | 12916 | 2023-02-26 | 2021-05-11 | 2.76 | 2.96 | 2.85 | 2.8 | 0.014 | 1.08 | 0.0 | 0.06 | 17.05 | 0.01 | 1.912 | 23.66 | 0.23 | 10.2 | 89.8 | 0.0 | -2.50 | 0.80 | 0.75 | 2.74 | 2.8 | 0.005 | 0.68 | 0.0 | 0.04 | 16.25 | 0.01 | 2.023 | 15.90 | 1.86 | 8.5 | 91.5 | 0.0 | -0.83 | 0.38 | 0.83 | 0.79 | 2.20 | 29255 | 1037 | 17 | 963 | 0 | 374 | 0 | logfile |
✔ | 6NF8 | 9362 | 2023-02-24 | 2018-12-19 | 3.48 | 3.99 | — | 3.6 | 0.001 | 0.39 | 0.0 | 0.03 | 12.76 | 0.00 | 1.916 | 3.07 | 0.58 | 10.4 | 88.3 | 1.3 | -2.53 | 0.76 | 0.60 | 1.16 | 3.5 | 0.004 | 0.69 | 0.0 | 0.04 | 15.87 | 0.00 | 2.020 | 14.69 | 0.52 | 6.3 | 93.7 | 0.0 | -0.36 | 2.60 | 0.84 | 0.80 | 1.20 | 65776 | 5509 | 32 | 952 | 147 | 0 | 0 | logfile |
✔ | 6NEQ | 9358 | 2023-02-24 | 2018-12-18 | 3.32 | 3.85 | — | 3.5 | 0.001 | 0.37 | 0.0 | 0.03 | 12.81 | 0.00 | 1.949 | 3.28 | 0.35 | 10.3 | 88.1 | 1.6 | -2.42 | 0.69 | 0.51 | 0.07 | 3.5 | 0.003 | 0.66 | 0.0 | 0.04 | 16.27 | 0.00 | 2.100 | 12.83 | 0.23 | 5.4 | 94.6 | 0.1 | -0.31 | 1.98 | 0.85 | 0.85 | 1.31 | 65776 | 5509 | 32 | 952 | 147 | 0 | 0 | logfile |
✔ | 8CST | 26970 | 2023-02-25 | 2022-05-13 | 2.85 | 2.57 | 2.87 | 2.7 | 0.005 | 0.67 | 0.0 | 0.39 | 15.75 | 0.01 | 1.938 | 2.58 | 0.00 | 1.4 | 98.6 | 0.0 | 1.18 | 0.69 | 0.78 | 3.45 | 2.7 | 0.004 | 0.79 | 0.0 | 0.12 | 16.70 | 0.00 | 1.931 | 6.57 | 1.46 | 1.8 | 98.2 | 0.0 | 1.48 | 1.56 | 0.70 | 0.81 | 3.06 | 66351 | 5810 | 39 | 889 | 41 | 0 | 0 | logfile |
✔ | 8CSU | 26971 | 2023-02-27 | 2022-05-13 | 3.03 | 2.74 | 3.02 | 2.9 | 0.004 | 0.64 | 1.0 | 0.39 | 15.54 | 0.00 | 1.964 | 2.56 | 0.02 | 1.5 | 98.5 | 0.0 | 1.16 | 0.69 | 0.77 | 2.72 | 2.8 | 0.005 | 0.80 | 0.0 | 0.12 | 16.42 | 0.00 | 1.905 | 6.72 | 0.17 | 2.3 | 97.7 | 0.0 | 1.33 | 0.42 | 0.70 | 0.80 | 2.45 | 68661 | 6119 | 40 | 882 | 38 | 0 | 0 | logfile |