Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7V2L	31655	2023-02-21	2021-08-09	3.3	3.14	3.24	3.1	0.008	1.07	1.0	0.10	16.30	0.00	2.214	5.68	0.09	6.7	93.1	0.2	-0.61	0.78	0.87	2.42	3.1	0.003	0.56	0.0	0.03	16.73	0.00	2.080	8.24	0.32	7.0	92.9	0.1	-0.28	0.24	0.79	0.88	2.06	53410	2621	24	1507	2	0	0	logfile
✔	5XYi	6788	2023-02-24	2017-07-08	3.35	3.41	—	3.4	0.007	1.11	5.0	0.09	18.00	0.00	1.113	14.15	5.14	8.3	89.0	2.7	-3.65	0.63	0.70	1.75	3.4	0.011	0.93	0.0	0.05	17.63	0.01	2.004	13.02	1.71	9.1	90.0	1.0	-1.65	1.55	0.79	0.85	1.45	65924	4368	34	1490	0	0	0	logfile
✔	7V2o	31658	2023-02-21	2021-08-09	3.5	3.22	3.31	3.0	0.008	1.12	2.0	0.10	16.74	0.00	2.203	6.79	0.18	5.3	94.5	0.2	-0.53	0.81	0.84	2.00	3.0	0.006	0.68	0.0	0.04	17.20	0.01	2.071	11.50	0.41	6.4	93.5	0.1	-0.38	0.37	0.80	0.83	1.99	53005	2624	24	1487	2	0	0	logfile
✔	7V2M	31656	2023-02-22	2021-08-09	3.4	3.28	3.35	3.1	0.008	1.15	3.0	0.11	16.39	0.00	2.232	6.24	0.33	6.5	93.2	0.3	-0.70	0.80	0.86	2.18	3.1	0.005	0.65	0.0	0.04	16.95	0.00	2.055	11.12	0.49	6.9	93.0	0.0	-0.33	0.32	0.80	0.87	2.02	55229	2909	25	1486	2	0	0	logfile
✔	6TMF	10519	2023-02-24	2019-12-04	2.8	2.90	—	2.8	0.017	1.11	2.0	0.07	15.95	0.01	1.750	4.72	0.73	9.5	90.0	0.5	-3.66	0.85	0.85	3.51	2.8	0.005	0.68	0.0	0.04	16.94	0.01	1.856	9.84	3.28	7.5	92.4	0.1	-0.65	2.23	0.88	0.89	2.84	65449	4172	35	1485	37	0	0	logfile
✔	5MMJ	3532	2023-02-22	2016-12-10	3.6	3.88	—	3.6	0.008	1.15	0.0	0.05	16.66	0.01	1.774	10.61	7.28	4.9	94.8	0.3	-3.46	0.92	0.86	1.28	3.6	0.005	0.71	0.0	0.04	16.28	0.01	1.334	19.31	1.26	5.4	94.4	0.1	-0.53	1.60	0.91	0.85	1.05	55315	2806	31	1484	359	0	0	logfile
✔	7WTS	32799	2023-02-23	2022-02-05	3.2	3.07	—	3.0	0.005	0.85	0.0	0.05	16.37	0.01	2.076	5.07	0.09	3.8	96.2	0.0	-1.00	0.75	0.75	2.70	3.0	0.007	0.76	0.0	0.04	16.96	0.01	2.057	9.88	0.46	4.5	95.5	0.0	0.08	0.38	0.77	0.77	2.58	61945	3777	23	1481	0	0	0	logfile
✔	5X8R	6710	2023-02-22	2017-03-03	3.7	3.88	—	3.8	0.012	1.32	8.0	0.06	14.80	0.01	1.255	12.16	1.03	12.1	86.8	1.1	-4.16	0.77	0.74	1.22	3.7	0.004	0.76	0.0	0.04	16.05	0.01	2.013	19.81	1.14	12.4	87.2	0.4	-2.36	1.33	0.81	0.83	0.98	55412	2969	26	1480	0	0	0	logfile
✘	4CE4	2490	2023-02-24	2013-11-08	4.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	65473	3572	40	1437	984	0	0	logfile
✔	8C00	16347	2023-02-23	2022-12-15	2.9	3.49	—	2.8	0.007	0.82	0.0	0.06	14.52	0.01	2.091	3.28	0.84	3.4	96.3	0.3	-0.72	0.88	0.89	3.72	2.8	0.003	0.63	0.0	0.04	14.64	0.00	2.140	6.41	1.31	3.1	96.8	0.1	0.49	1.10	0.88	0.89	2.77	63117	4186	26	1425	0	0	0	logfile
✔	7V2Q	31660	2023-02-21	2021-08-09	3.24	3.12	3.13	3.0	0.008	1.14	2.0	0.10	15.54	0.00	2.189	6.75	0.16	6.4	93.6	0.1	-1.01	0.82	0.86	1.80	2.9	0.006	0.70	0.0	0.04	16.49	0.01	2.111	10.94	0.62	6.6	93.3	0.0	-0.43	1.48	0.82	0.88	2.05	52904	2875	25	1391	2	0	0	logfile
✔	7PWF	13680	2023-02-23	2021-10-06	2.85	2.33	—	2.5	0.007	0.98	0.0	0.07	17.37	0.03	1.748	7.23	0.09	5.3	94.5	0.2	-2.09	0.68	0.81	3.26	2.5	0.003	0.81	0.0	0.04	17.75	0.01	1.947	6.48	2.80	4.9	95.0	0.1	-1.17	0.92	0.68	0.81	2.89	60466	3965	45	1355	303	0	0	logfile
✔	7WTR	32796	2023-02-21	2022-02-05	3.5	3.44	—	3.3	0.006	0.88	0.0	0.05	16.48	0.01	2.080	6.30	0.00	7.2	92.7	0.1	-3.07	0.84	0.83	2.34	3.3	0.003	0.61	0.0	0.04	16.83	0.00	2.087	10.88	0.25	7.4	92.6	0.0	-0.98	1.13	0.83	0.83	1.82	53512	3259	20	1298	1	0	0	logfile
✔	7WTP	32794	2023-02-21	2022-02-05	3.8	3.62	—	3.4	0.007	0.96	0.0	0.05	16.68	0.01	2.103	8.20	0.04	8.7	91.1	0.1	-2.27	0.83	0.82	1.74	3.4	0.007	0.79	0.0	0.04	17.20	0.01	2.000	15.90	0.60	9.7	90.2	0.1	-1.46	0.37	0.83	0.82	1.42	52944	3296	20	1255	1	0	0	logfile
✔	5AJ3	2913	2023-02-25	2015-02-20	3.6	3.73	—	3.7	0.018	1.28	0.0	0.05	18.85	0.07	1.844	24.00	10.71	3.9	96.0	0.1	-3.65	0.86	0.86	2.03	3.6	0.004	1.41	0.0	0.04	19.14	0.02	1.819	16.05	0.59	4.7	95.3	0.0	0.16	1.64	0.84	0.82	1.63	66363	4665	44	1102	1006	118	0	logfile
✔	7oi0	12916	2023-02-26	2021-05-11	2.76	2.96	2.85	2.8	0.014	1.08	0.0	0.06	17.05	0.01	1.912	23.66	0.23	10.2	89.8	0.0	-2.50	0.80	0.75	2.74	2.8	0.005	0.68	0.0	0.04	16.25	0.01	2.023	15.90	1.86	8.5	91.5	0.0	-0.83	0.38	0.83	0.79	2.20	29255	1037	17	963	0	374	0	logfile
✔	6NF8	9362	2023-02-24	2018-12-19	3.48	3.99	—	3.6	0.001	0.39	0.0	0.03	12.76	0.00	1.916	3.07	0.58	10.4	88.3	1.3	-2.53	0.76	0.60	1.16	3.5	0.004	0.69	0.0	0.04	15.87	0.00	2.020	14.69	0.52	6.3	93.7	0.0	-0.36	2.60	0.84	0.80	1.20	65776	5509	32	952	147	0	0	logfile
✔	6NEQ	9358	2023-02-24	2018-12-18	3.32	3.85	—	3.5	0.001	0.37	0.0	0.03	12.81	0.00	1.949	3.28	0.35	10.3	88.1	1.6	-2.42	0.69	0.51	0.07	3.5	0.003	0.66	0.0	0.04	16.27	0.00	2.100	12.83	0.23	5.4	94.6	0.1	-0.31	1.98	0.85	0.85	1.31	65776	5509	32	952	147	0	0	logfile
✔	8CST	26970	2023-02-25	2022-05-13	2.85	2.57	2.87	2.7	0.005	0.67	0.0	0.39	15.75	0.01	1.938	2.58	0.00	1.4	98.6	0.0	1.18	0.69	0.78	3.45	2.7	0.004	0.79	0.0	0.12	16.70	0.00	1.931	6.57	1.46	1.8	98.2	0.0	1.48	1.56	0.70	0.81	3.06	66351	5810	39	889	41	0	0	logfile
✔	8CSU	26971	2023-02-27	2022-05-13	3.03	2.74	3.02	2.9	0.004	0.64	1.0	0.39	15.54	0.00	1.964	2.56	0.02	1.5	98.5	0.0	1.16	0.69	0.77	2.72	2.8	0.005	0.80	0.0	0.12	16.42	0.00	1.905	6.72	0.17	2.3	97.7	0.0	1.33	0.42	0.70	0.80	2.45	68661	6119	40	882	38	0	0	logfile

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