Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6WNW	21858	2023-07-24	2020-04-23	3.2	3.94	3.40	3.2	0.007	0.96	0.0	0.08	13.69	0.01	1.975	10.35	0.77	11.5	86.6	2.0	-4.63	0.88	0.82	2.15	3.2	0.005	0.68	0.0	0.04	15.62	0.00	2.025	19.42	0.91	10.1	89.6	0.2	-2.10	1.06	0.91	0.90	1.61	149080	6089	57	4733	0	0	0	logfile
✔	8A3L	15116	2023-07-22	2022-06-08	3.42	3.28	3.30	3.3	0.008	0.76	2.0	0.05	15.62	0.02	1.607	10.99	2.12	7.5	91.9	0.6	-0.87	0.78	0.80	2.45	3.3	0.003	0.66	0.0	0.04	15.97	0.01	1.744	10.84	0.35	5.0	94.9	0.1	-0.71	1.06	0.84	0.85	2.10	147640	5876	65	4722	316	0	0	logfile
✔	7QGH	13955	2023-07-23	2021-12-08	4.48	9.26	—	4.8	0.016	1.62	58.0	0.11	15.10	0.01	0.197	5.44	1.41	8.8	90.2	1.0	-4.05	0.66	0.38	—	4.5	0.006	0.93	1.0	0.05	18.29	0.01	1.254	59.68	0.04	11.4	88.5	0.1	-2.68	2.11	0.85	0.78	—	147973	6046	58	4716	3	9	0	logfile
✔	5U4i	8505	2023-07-25	2016-12-04	3.5	3.09	3.83	3.7	0.007	1.17	41.0	0.10	18.54	0.02	1.386	8.56	8.19	6.4	92.7	0.8	-1.32	0.60	0.74	0.22	3.0	0.005	0.80	0.0	0.04	18.66	0.01	1.670	32.60	1.29	7.3	92.6	0.1	-1.91	1.50	0.63	0.74	0.31	149495	6159	61	4715	125	0	0	logfile
✔	3JCD	6549	2023-07-22	2015-12-01	3.7	5.07	—	19.0	0.006	0.83	0.0	0.04	14.69	0.00	1.289	14.63	0.02	9.6	85.8	4.5	-2.43	0.34	0.04	0.30	3.4	0.005	1.16	0.0	0.06	20.49	0.01	1.400	48.65	0.88	15.2	83.4	1.3	-4.28	2.51	0.71	0.42	0.16	147815	5982	57	4715	0	0	0	logfile
✔	5JU8	8176	2023-07-19	2016-05-10	3.6	3.15	—	3.2	0.015	1.74	0.0	0.07	12.18	0.01	1.433	6.13	0.00	7.3	90.0	2.7	-1.92	0.64	0.62	0.69	3.1	0.004	0.75	0.0	0.04	15.79	0.01	1.938	15.92	0.74	8.8	90.5	0.7	-2.09	1.83	0.69	0.74	1.19	145158	5624	57	4712	1	0	0	logfile
✔	5UQ8	8597	2023-07-24	2017-02-07	3.2	3.24	—	3.2	0.009	0.76	0.0	0.04	15.80	0.02	1.881	46.69	0.00	7.6	92.3	0.1	-3.58	0.63	0.71	2.81	3.2	0.009	0.80	0.0	0.04	17.27	0.01	1.637	53.30	1.57	9.4	90.6	0.1	-1.75	0.67	0.72	0.85	2.39	148590	6027	63	4708	7	0	4	logfile
✔	5UQ7	8596	2023-07-23	2017-02-07	3.5	3.86	—	3.7	0.009	0.76	0.0	0.04	16.06	0.02	1.914	50.87	0.04	7.7	92.2	0.1	-3.59	0.80	0.81	2.02	3.7	0.010	0.77	0.0	0.04	17.34	0.01	1.642	72.07	1.74	8.6	91.4	0.0	-1.09	2.10	0.82	0.86	1.77	148590	6027	63	4708	7	0	4	logfile
✔	5L3P	4001	2023-07-25	2016-05-24	3.7	4.66	—	16.0	0.006	0.60	0.0	0.19	12.34	0.02	2.115	7.18	0.00	8.2	89.4	2.4	-1.95	0.44	0.11	0.16	3.9	0.007	1.28	4.0	0.06	18.96	0.01	1.742	61.81	1.02	12.1	87.1	0.8	-2.95	2.41	0.68	0.46	-0.03	149606	6419	58	4704	76	0	0	logfile
✔	7P7T	13244	2023-07-24	2021-07-20	2.9	3.42	2.91	2.2	0.005	0.40	0.0	0.04	14.00	0.01	1.679	4.44	0.66	2.6	97.4	0.0	0.93	0.89	0.91	3.72	2.1	0.007	0.66	0.0	0.04	14.83	0.00	1.738	10.38	2.10	3.3	96.7	0.0	0.46	0.41	0.89	0.92	3.36	149080	6097	68	4697	307	1	0	logfile
✔	7QGN	13956	2023-07-24	2021-12-09	3.37	5.04	—	3.4	0.016	1.62	61.0	0.11	15.09	0.01	0.771	4.90	1.61	8.6	90.4	1.0	-3.93	0.63	0.45	0.27	3.4	0.003	0.64	0.0	0.03	16.26	0.00	1.989	19.37	0.31	8.3	91.6	0.1	-1.84	2.76	0.78	0.77	0.42	147306	5975	59	4695	3	9	0	logfile
✔	7QG8	13952	2023-07-24	2021-12-07	3.97	7.71	—	4.0	0.016	1.62	61.0	0.11	15.09	0.01	0.770	4.86	1.61	8.6	90.4	1.0	-3.97	0.64	0.40	0.16	4.0	0.004	0.81	0.0	0.04	18.76	0.01	1.898	43.62	0.83	11.4	88.4	0.1	-2.67	4.35	0.84	0.77	0.00	147108	5936	58	4695	3	9	0	logfile
✔	6ENJ	3899	2023-07-21	2017-10-05	3.7	3.76	—	3.7	0.003	0.61	0.0	0.03	14.08	0.01	1.234	4.06	0.06	8.4	91.3	0.3	-4.96	0.77	0.77	1.43	3.7	0.007	0.84	0.0	0.04	16.60	0.01	2.028	18.23	1.34	12.8	86.9	0.3	-3.13	1.77	0.80	0.81	1.43	147111	5950	56	4693	0	0	0	logfile
✔	5NP6	3618	2023-07-21	2017-04-13	3.6	4.23	3.52	3.6	0.004	0.66	0.0	0.06	15.49	0.02	0.612	13.59	0.00	14.9	84.5	0.6	-4.69	0.90	0.87	2.11	3.6	0.004	0.74	0.0	0.04	16.14	0.01	1.947	16.57	0.72	9.0	90.5	0.5	-1.53	1.66	0.92	0.90	1.66	146883	5995	57	4667	0	0	0	logfile
✘	6oFX	20048	2023-07-18	2019-04-01	3.3	4.60	—	2.8	0.008	1.07	0.0	0.09	14.39	0.01	2.098	16.59	0.43	9.3	90.1	0.6	-4.73	0.91	0.82	1.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	144986	5753	55	4659	0	0	0	logfile
✔	6oG7	20052	2023-07-22	2019-04-01	3.3	4.37	—	3.1	0.006	0.90	0.0	0.08	13.50	0.01	2.140	16.95	0.74	11.4	87.1	1.4	-4.43	0.91	0.84	0.96	3.1	0.005	0.69	0.0	0.04	16.09	0.00	1.948	24.36	0.72	10.7	89.2	0.1	-2.13	1.53	0.92	0.89	0.82	147794	6113	55	4657	0	0	0	logfile
✔	6WD1	21620	2023-07-21	2020-03-31	3.3	3.61	3.63	3.4	0.006	0.94	0.0	0.08	13.39	0.01	2.219	11.79	0.55	10.6	87.9	1.5	-5.05	0.82	0.83	1.64	3.4	0.005	0.68	0.0	0.04	15.58	0.00	2.015	18.97	0.77	9.9	89.9	0.1	-2.20	0.68	0.83	0.85	1.26	146942	6023	56	4657	0	0	0	logfile
✔	7QGU	13959	2023-07-13	2021-12-10	4.75	7.20	—	5.6	0.010	1.50	1.0	0.04	15.78	0.02	1.064	11.45	0.26	6.6	91.0	2.3	-1.82	0.70	0.57	—	5.5	0.009	1.09	0.0	0.05	20.48	0.01	1.102	77.49	0.00	10.9	88.3	0.8	-1.78	2.90	0.82	0.84	—	135606	5791	54	4656	0	0	0	logfile
✔	7JSZ	22464	2023-07-22	2020-08-16	3.7	4.30	3.93	4.0	0.005	0.96	2.0	0.08	13.65	0.01	2.227	11.91	0.88	11.0	87.0	2.0	-5.09	0.86	0.85	1.01	4.0	0.005	0.73	0.0	0.04	16.13	0.01	1.953	26.42	1.22	10.5	89.3	0.2	-2.66	1.11	0.87	0.86	0.70	147860	6144	57	4655	0	0	0	logfile
✔	6oGG	20057	2023-07-22	2019-04-02	4.2	5.09	—	3.4	0.006	0.85	0.0	0.07	13.94	0.01	2.108	14.59	0.56	10.6	89.3	0.1	-4.88	0.87	0.76	—	3.4	0.004	0.72	0.0	0.04	17.77	0.01	1.791	35.74	0.06	12.4	87.5	0.1	-3.21	1.77	0.88	0.82	—	147733	6113	55	4655	0	0	0	logfile

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