Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7U9Z	26410	2023-08-23	2022-03-11	3.29	3.51	—	1.9	0.003	0.76	4.0	0.04	15.16	0.01	1.938	11.72	1.19	4.6	95.3	0.1	0.57	0.86	0.79	2.26	1.9	0.003	0.64	0.0	0.04	15.69	0.00	2.140	11.14	0.11	4.5	95.4	0.1	0.89	1.01	0.87	0.85	2.84	138688	17332	12	0	20	0	0	logfile
✔	7UA1	26412	2023-08-23	2022-03-11	2.99	3.02	—	1.9	0.003	0.62	0.0	0.04	14.11	0.00	1.785	8.77	0.29	3.3	96.6	0.1	1.20	0.85	0.80	2.97	1.9	0.003	0.67	0.0	0.04	15.27	0.00	2.125	9.07	0.44	4.0	96.0	0.1	1.12	0.44	0.87	0.84	3.34	138680	17324	12	0	16	0	0	logfile
✔	7UA9	26416	2023-08-22	2022-03-11	3.59	3.94	—	2.0	0.010	0.88	4.0	0.04	14.73	0.01	1.935	14.89	1.82	3.1	96.8	0.1	0.41	0.85	0.79	2.17	1.9	0.010	0.66	0.0	0.04	15.06	0.00	1.895	12.06	0.09	2.9	97.0	0.0	1.15	0.98	0.86	0.81	2.32	138656	17324	12	0	20	0	0	logfile
✔	7U9Q	26405	2023-08-22	2022-03-11	3.11	3.51	—	1.9	0.003	0.85	0.0	0.04	14.10	0.01	2.065	12.40	0.66	3.4	96.5	0.1	-1.28	0.86	0.79	2.19	1.9	0.004	0.70	0.0	0.04	14.75	0.00	2.069	11.77	0.15	3.6	96.3	0.1	0.82	0.46	0.88	0.86	2.50	138608	17324	12	0	12	0	0	logfile
✔	7U9X	26409	2023-08-22	2022-03-11	2.58	2.84	—	1.7	0.003	0.61	0.0	0.04	14.15	0.00	2.080	9.25	0.11	2.3	97.7	0.0	1.30	0.87	0.83	3.55	1.7	0.003	0.64	0.0	0.04	15.20	0.00	2.114	8.19	0.25	2.9	97.1	0.0	1.66	0.41	0.88	0.87	3.93	138588	17324	12	0	12	0	0	logfile
✔	7UA5	26415	2023-08-22	2022-03-11	2.83	3.22	—	1.8	0.003	0.78	0.0	0.04	14.59	0.01	1.909	11.04	1.41	3.1	96.8	0.1	0.85	0.86	0.82	2.90	1.8	0.005	0.72	0.0	0.04	15.22	0.00	2.055	10.64	0.43	3.4	96.5	0.1	1.11	0.45	0.87	0.86	3.22	138608	17324	12	0	12	0	0	logfile
✔	7U9R	26407	2023-08-22	2022-03-11	3.69	3.91	—	2.1	0.003	0.85	8.0	0.04	15.09	0.01	1.708	13.03	2.45	2.4	97.5	0.1	1.06	0.80	0.69	1.99	2.0	0.006	0.65	0.0	0.04	15.16	0.00	2.100	11.51	0.05	3.3	96.6	0.1	1.33	0.51	0.82	0.80	2.64	138656	17324	12	0	20	0	0	logfile
✔	8CWM	27026	2023-08-19	2022-05-19	3.4	3.68	3.41	3.5	0.003	0.56	0.0	0.04	12.14	0.00	2.102	9.06	0.01	6.4	93.6	0.0	-3.89	0.65	0.84	3.75	3.5	0.003	0.66	0.0	0.05	14.30	0.00	2.005	10.55	0.32	5.6	94.4	0.0	-0.34	1.60	0.65	0.85	3.36	130980	17220	60	0	0	0	0	logfile
✔	7SZZ	25573	2023-08-25	2021-11-29	3.9	4.01	—	4.0	0.007	0.62	0.0	0.03	14.38	0.00	2.505	10.59	0.00	6.5	93.5	0.0	-4.42	0.72	0.86	2.41	4.0	0.004	0.96	0.0	0.04	17.55	0.00	2.108	12.03	0.46	2.0	98.0	0.0	-0.24	0.74	0.72	0.83	0.73	143112	17085	804	0	0	0	0	logfile
✔	7JU4	22481	2023-08-19	2020-08-19	3.4	3.50	—	3.7	0.004	0.70	3.0	0.05	15.00	0.00	1.923	14.97	0.04	5.8	94.2	0.0	-0.77	0.58	0.71	1.64	3.7	0.003	0.65	0.0	0.04	16.56	0.00	1.890	12.89	0.33	4.4	95.6	0.0	0.07	0.41	0.60	0.78	1.22	133504	16960	90	14	101	0	0	logfile
✘	7Uii	26546	2023-08-18	2022-03-29	2.6	2.91	2.65	2.9	0.003	0.61	0.0	0.05	13.58	0.00	2.234	5.76	0.00	5.1	94.9	0.0	-0.77	0.60	0.87	4.85	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	130944	16926	93	0	186	186	0	logfile
✔	6RC8	4803	2023-08-18	2019-04-11	3.8	3.96	—	3.8	0.002	0.66	0.0	0.05	12.12	0.01	2.282	6.80	0.79	12.4	87.6	0.0	-5.76	0.68	0.86	2.14	3.8	0.004	0.80	0.0	0.05	14.18	0.00	2.033	10.01	0.47	10.4	89.6	0.0	-2.88	0.62	0.69	0.87	1.59	130152	16872	48	0	0	0	0	logfile
✔	6X8T	22095	2023-08-19	2020-06-01	2.9	2.95	2.71	2.9	0.007	0.68	0.0	0.05	12.90	0.01	1.483	6.41	0.41	5.4	94.6	0.0	-0.76	0.86	0.88	4.43	2.9	0.002	0.50	0.0	0.04	15.63	0.00	2.225	4.94	0.70	5.0	95.0	0.0	0.24	3.98	0.86	0.89	4.12	133440	16800	60	0	0	0	0	logfile
✔	8C6J	16452	2023-08-11	2023-01-12	2.8	3.35	2.78	2.6	0.003	0.52	1.0	0.04	13.30	0.00	1.589	7.77	0.06	2.6	97.4	0.0	1.31	0.69	0.71	3.35	2.6	0.007	0.63	0.0	0.05	14.22	0.00	1.853	9.45	1.19	3.9	96.1	0.0	1.77	0.36	0.75	0.82	3.22	111233	16794	69	460	18	0	0	logfile
✔	8DVE	27736	2023-08-12	2022-07-28	3.84	4.26	4.00	4.0	0.003	0.63	0.0	0.04	12.07	0.00	2.196	9.27	0.63	1.7	98.3	0.0	1.70	0.81	0.78	1.20	4.0	0.004	0.61	0.0	0.04	14.02	0.00	2.102	10.17	0.39	2.8	97.2	0.0	1.64	0.42	0.84	0.83	1.29	114229	16751	16	0	16	0	0	logfile
✔	3J9G	2699	2023-08-19	2015-01-16	3.5	2.75	—	3.5	0.011	1.34	0.0	0.06	10.86	0.01	2.365	1.99	0.00	3.6	95.7	0.7	-0.80	0.40	0.65	0.79	3.2	0.003	0.68	0.0	0.04	16.30	0.01	2.097	10.44	0.71	2.4	97.5	0.1	0.84	1.17	0.42	0.80	1.74	132930	16710	60	0	0	0	0	logfile
✔	7WPS	32690	2023-08-18	2022-01-24	4.32	4.69	—	4.2	0.007	0.92	0.0	0.06	10.45	0.01	1.790	3.99	0.35	10.0	89.8	0.2	-4.55	0.72	0.47	—	4.1	0.003	0.72	0.0	0.04	11.70	0.00	2.104	14.22	0.12	7.5	92.5	0.0	-1.91	2.69	0.91	0.80	—	127624	16646	56	0	98	0	0	logfile
✔	6GJC	0011	2023-08-16	2018-05-16	3.3	3.78	3.65	3.6	0.008	1.07	6.0	0.06	10.27	0.01	2.247	5.47	1.03	7.5	92.5	0.0	-4.03	0.86	0.84	2.14	3.6	0.003	0.69	0.0	0.04	13.17	0.00	2.106	10.45	0.30	6.0	94.0	0.0	-0.63	0.66	0.87	0.86	1.70	124992	16620	12	0	6	0	0	logfile
✔	7SN9	25215	2023-08-14	2021-10-27	3.5	4.01	—	3.8	0.002	0.52	0.0	0.04	13.55	0.00	2.135	9.66	0.20	5.5	94.5	0.0	2.56	0.59	0.85	2.04	3.8	0.004	0.59	0.0	0.04	15.06	0.00	2.108	10.71	0.42	7.6	92.4	0.0	1.99	0.40	0.60	0.87	1.95	119154	16548	42	0	0	0	0	logfile
✔	8DUJ	27721	2023-08-09	2022-07-27	3.7	3.96	3.84	3.8	0.003	0.57	0.0	0.04	14.31	0.00	2.200	8.18	1.25	1.5	98.5	0.0	2.77	0.78	0.71	0.63	3.8	0.003	0.59	0.0	0.04	14.28	0.00	2.058	9.72	0.33	2.2	97.8	0.0	2.48	0.46	0.81	0.78	1.07	106156	16523	17	0	16	0	0	logfile

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