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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6KMX | 0727 | 2023-12-09 | 2019-08-01 | 2.41 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65112 | 5919 | 72 | 0 | 363 | 636 | 0 | logfile |
✘ | 6KMW | 0726 | 2023-12-09 | 2019-08-01 | 2.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64083 | 5739 | 63 | 0 | 366 | 627 | 0 | logfile |
✔ | 8oiD | 16889 | 2023-12-10 | 2023-03-22 | 2.3 | 2.37 | 2.20 | 2.3 | 0.004 | 0.61 | 0.0 | 0.04 | 13.01 | 0.00 | 1.840 | 4.07 | 0.96 | 3.8 | 96.2 | 0.0 | -0.64 | 0.73 | 0.87 | 5.49 | 2.3 | 0.003 | 0.62 | 0.0 | 0.04 | 15.89 | 0.00 | 1.865 | 4.80 | 0.38 | 1.6 | 98.4 | 0.0 | 1.56 | 1.08 | 0.74 | 0.90 | 5.04 | 15206 | 1850 | 15 | 0 | 10 | 616 | 0 | logfile |
✔ | 7UUR | 26801 | 2023-12-10 | 2022-04-28 | 1.67 | 1.76 | 1.67 | 1.8 | 0.061 | 2.45 | 3.0 | 0.98 | 14.57 | 0.01 | 1.674 | 7.19 | 0.44 | 2.5 | 97.2 | 0.2 | -0.89 | 0.76 | 0.87 | 7.87 | 1.8 | 0.007 | 2.49 | 0.0 | 0.07 | 14.70 | 0.01 | 1.611 | 10.87 | 0.29 | 2.1 | 97.9 | 0.0 | 0.19 | 0.27 | 0.77 | 0.88 | 7.79 | 13683 | 1668 | 12 | 0 | 18 | 603 | 0 | logfile |
✔ | 7SS5 | 25404 | 2023-12-08 | 2021-11-09 | 2.7 | 3.48 | 2.63 | 3.2 | 0.003 | 0.63 | 2.0 | 0.05 | 19.81 | 0.00 | 2.179 | 8.80 | 0.00 | 3.1 | 96.9 | 0.0 | 0.76 | 0.51 | 0.75 | 3.88 | 3.2 | 0.004 | 0.63 | 0.0 | 0.04 | 21.81 | 0.00 | 2.086 | 8.56 | 1.95 | 3.3 | 96.7 | 0.0 | 1.92 | 3.21 | 0.51 | 0.88 | 3.26 | 6927 | 676 | 10 | 48 | 6 | 593 | 0 | logfile |
✔ | 8A2S | 15105 | 2023-12-10 | 2022-06-06 | 2.22 | 2.37 | 2.18 | 2.3 | 0.009 | 0.68 | 0.0 | 0.05 | 14.10 | 0.01 | 1.758 | 3.33 | 0.64 | 1.9 | 98.1 | 0.0 | -1.13 | 0.71 | 0.87 | 6.45 | 2.3 | 0.003 | 0.60 | 0.0 | 0.05 | 16.41 | 0.00 | 1.907 | 4.99 | 0.84 | 1.4 | 98.6 | 0.0 | 0.79 | 0.82 | 0.72 | 0.89 | 5.97 | 15141 | 1835 | 15 | 0 | 15 | 591 | 0 | logfile |
✔ | 8oi8 | 16888 | 2023-12-10 | 2023-03-22 | 2.28 | 2.38 | 2.21 | 2.3 | 0.004 | 0.58 | 0.0 | 0.04 | 12.07 | 0.00 | 1.798 | 3.42 | 0.65 | 1.4 | 98.6 | 0.0 | -1.50 | 0.72 | 0.87 | 5.56 | 2.3 | 0.005 | 0.66 | 0.0 | 0.05 | 15.05 | 0.00 | 1.739 | 4.06 | 1.05 | 0.7 | 99.3 | 0.0 | 1.29 | 2.13 | 0.74 | 0.91 | 5.56 | 14895 | 1815 | 15 | 0 | 10 | 585 | 0 | logfile |
✔ | 7XY9 | 33514 | 2023-12-09 | 2022-06-01 | 2.12 | 2.29 | 2.22 | 2.3 | 0.002 | 0.54 | 0.0 | 0.05 | 17.43 | 0.00 | 1.988 | 4.59 | 1.67 | 4.0 | 96.0 | 0.0 | 0.43 | 0.78 | 0.88 | 5.01 | 2.3 | 0.004 | 0.67 | 0.0 | 0.05 | 17.41 | 0.01 | 1.873 | 5.07 | 1.95 | 4.2 | 95.8 | 0.0 | -0.09 | 0.16 | 0.75 | 0.87 | 5.58 | 10962 | 1376 | 12 | 0 | 12 | 574 | 0 | logfile |
✔ | 8A2Z | 15109 | 2023-12-10 | 2022-06-06 | 2.15 | 2.27 | 2.11 | 2.2 | 0.004 | 0.58 | 0.0 | 0.04 | 11.91 | 0.00 | 2.190 | 1.81 | 0.00 | 2.1 | 97.7 | 0.3 | -1.13 | 0.74 | 0.87 | 6.56 | 2.2 | 0.003 | 0.59 | 0.0 | 0.04 | 15.50 | 0.00 | 2.041 | 4.24 | 0.52 | 1.7 | 98.3 | 0.0 | 1.11 | 1.46 | 0.74 | 0.89 | 5.98 | 15060 | 1830 | 15 | 0 | 10 | 570 | 0 | logfile |
✔ | 8A2T | 15106 | 2023-12-10 | 2022-06-06 | 2.24 | 2.35 | 2.17 | 2.3 | 0.004 | 0.56 | 0.0 | 0.04 | 13.20 | 0.00 | 1.880 | 2.50 | 0.32 | 1.9 | 98.1 | 0.0 | -1.62 | 0.71 | 0.87 | 5.89 | 2.3 | 0.003 | 0.61 | 0.0 | 0.04 | 16.32 | 0.00 | 1.898 | 3.79 | 0.52 | 1.1 | 98.9 | 0.0 | 1.10 | 0.81 | 0.74 | 0.90 | 5.29 | 15046 | 1830 | 15 | 0 | 10 | 556 | 0 | logfile |
✔ | 8A2Y | 15108 | 2023-12-10 | 2022-06-06 | 2.15 | 2.21 | 2.10 | 2.2 | 0.005 | 0.61 | 0.0 | 0.05 | 13.42 | 0.00 | 2.177 | 2.39 | 0.64 | 1.9 | 98.1 | 0.0 | -1.01 | 0.72 | 0.87 | 6.39 | 2.2 | 0.003 | 0.62 | 0.0 | 0.05 | 15.79 | 0.00 | 2.140 | 4.05 | 0.58 | 1.1 | 98.9 | 0.0 | 0.97 | 0.83 | 0.72 | 0.89 | 6.11 | 15078 | 1835 | 15 | 0 | 15 | 528 | 0 | logfile |
✔ | 7o0X | 12682 | 2023-12-08 | 2021-03-28 | 2.44 | 2.39 | — | 2.3 | 0.018 | 4.34 | 0.0 | 0.06 | 22.65 | 0.01 | 2.099 | 1.65 | 0.23 | 1.4 | 98.6 | 0.0 | 1.33 | 0.82 | 0.86 | 5.55 | 2.3 | 0.005 | 1.75 | 0.0 | 0.04 | 19.50 | 0.00 | 2.068 | 6.89 | 1.23 | 1.0 | 99.0 | 0.0 | 3.67 | 0.49 | 0.83 | 0.88 | 4.37 | 56446 | 5072 | 237 | 0 | 316 | 521 | 0 | logfile |
✔ | 8A2U | 15107 | 2023-12-10 | 2022-06-06 | 2.21 | 2.31 | 2.16 | 2.3 | 0.004 | 0.63 | 0.0 | 0.04 | 13.27 | 0.00 | 2.173 | 2.75 | 0.65 | 2.5 | 97.5 | 0.0 | -1.41 | 0.72 | 0.86 | 6.31 | 2.3 | 0.002 | 0.59 | 0.0 | 0.04 | 16.64 | 0.00 | 2.155 | 3.93 | 0.52 | 1.3 | 98.7 | 0.0 | 1.13 | 1.06 | 0.73 | 0.88 | 6.00 | 15022 | 1830 | 15 | 0 | 15 | 512 | 0 | logfile |
✔ | 7PCH | 13320 | 2023-12-09 | 2021-08-03 | 2.89 | 3.82 | 2.93 | 3.4 | 0.012 | 1.54 | 0.0 | 0.10 | 13.62 | 0.01 | 2.343 | 0.97 | 0.55 | 3.7 | 96.3 | 0.0 | 1.22 | 0.89 | 0.83 | 3.70 | 3.4 | 0.004 | 0.64 | 0.0 | 0.04 | 14.40 | 0.00 | 2.170 | 6.27 | 0.55 | 0.8 | 99.2 | 0.0 | 2.33 | 1.58 | 0.91 | 0.89 | 3.66 | 10798 | 1254 | 16 | 0 | 4 | 510 | 0 | logfile |
✔ | 7o0U | 12679 | 2023-12-08 | 2021-03-27 | 2.35 | 2.42 | — | 2.3 | 0.018 | 4.37 | 0.0 | 0.06 | 22.61 | 0.01 | 2.121 | 1.73 | 0.41 | 1.2 | 98.8 | 0.0 | 1.39 | 0.83 | 0.86 | 5.52 | 2.3 | 0.004 | 1.70 | 0.0 | 0.04 | 19.36 | 0.00 | 1.811 | 7.40 | 1.28 | 0.9 | 99.1 | 0.0 | 3.70 | 0.50 | 0.84 | 0.90 | 4.35 | 55758 | 4972 | 236 | 0 | 320 | 491 | 0 | logfile |
✔ | 7o0V | 12680 | 2023-12-08 | 2021-03-27 | 2.5 | 2.50 | — | 2.4 | 0.018 | 4.38 | 0.0 | 0.06 | 22.57 | 0.01 | 2.117 | 1.81 | 0.31 | 1.2 | 98.8 | 0.0 | 1.63 | 0.82 | 0.86 | 5.41 | 2.4 | 0.009 | 1.88 | 0.0 | 0.05 | 20.36 | 0.01 | 2.029 | 8.72 | 1.46 | 1.1 | 98.9 | 0.0 | 3.10 | 1.12 | 0.84 | 0.89 | 4.49 | 55475 | 4947 | 238 | 0 | 317 | 489 | 0 | logfile |
✔ | 8A2R | 15104 | 2023-12-10 | 2022-06-06 | 2.17 | 2.31 | 2.13 | 2.2 | 0.005 | 0.67 | 0.0 | 0.04 | 13.67 | 0.00 | 1.880 | 2.75 | 0.65 | 2.5 | 97.5 | 0.0 | -1.52 | 0.72 | 0.86 | 5.94 | 2.2 | 0.002 | 0.57 | 0.0 | 0.04 | 16.82 | 0.00 | 1.938 | 3.48 | 0.90 | 1.4 | 98.6 | 0.0 | 1.29 | 1.70 | 0.73 | 0.90 | 5.61 | 14990 | 1830 | 15 | 0 | 15 | 480 | 0 | logfile |
✔ | 8BGW | 16041 | 2023-12-10 | 2022-10-28 | 2.2 | 1.96 | 2.24 | 2.2 | 0.016 | 2.06 | 2.0 | 0.09 | 19.30 | 0.02 | 1.923 | 16.69 | 3.84 | 6.1 | 93.4 | 0.5 | -3.60 | 0.68 | 0.80 | 5.25 | 2.2 | 0.005 | 0.84 | 0.0 | 0.04 | 16.48 | 0.01 | 1.855 | 19.01 | 0.43 | 3.9 | 96.1 | 0.0 | 0.86 | 0.41 | 0.77 | 0.84 | 4.62 | 12927 | 1500 | 6 | 0 | 25 | 449 | 0 | logfile |
✔ | 8D13 | 27114 | 2023-12-08 | 2022-05-26 | 2.43 | 3.23 | 2.44 | 2.8 | 0.003 | 0.60 | 0.0 | 0.05 | 13.77 | 0.00 | 2.067 | 4.19 | 0.64 | 0.8 | 99.2 | 0.0 | 1.47 | 0.69 | 0.86 | 4.45 | 2.8 | 0.003 | 0.55 | 0.0 | 0.04 | 14.58 | 0.00 | 1.865 | 3.90 | 0.43 | 1.7 | 98.3 | 0.0 | 1.47 | 1.49 | 0.70 | 0.92 | 4.43 | 9216 | 1113 | 9 | 0 | 6 | 432 | 0 | logfile |
✔ | 8D14 | 27115 | 2023-12-08 | 2022-05-26 | 2.51 | 2.45 | 2.49 | 2.6 | 0.004 | 0.57 | 0.0 | 0.05 | 13.46 | 0.00 | 2.064 | 5.73 | 0.32 | 1.1 | 98.9 | 0.0 | 1.45 | 0.66 | 0.87 | 4.65 | 2.5 | 0.003 | 0.59 | 0.0 | 0.04 | 15.95 | 0.00 | 1.892 | 4.58 | 0.85 | 0.9 | 99.1 | 0.0 | 1.26 | 0.36 | 0.65 | 0.88 | 4.98 | 9225 | 1113 | 9 | 0 | 9 | 426 | 0 | logfile |