Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8GWN	34317	2023-02-24	2022-09-17	3.38	3.97	3.47	3.7	0.015	1.23	0.0	0.06	18.41	0.01	1.979	38.61	14.07	23.5	75.0	1.5	-6.16	0.86	0.83	1.87	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21860	2655	12	52	9	0	0	logfile
✔	8GWi	34313	2023-02-24	2022-09-17	3.18	3.41	3.21	3.4	0.009	0.94	5.0	0.06	17.82	0.01	2.045	13.54	5.14	8.4	91.2	0.4	-1.94	0.59	0.52	0.32	3.4	0.003	0.69	0.0	0.04	16.81	0.00	2.116	11.53	0.22	7.9	92.0	0.1	-1.47	1.69	0.77	0.86	2.06	21955	2668	13	52	9	1	0	logfile
✔	8GWG	34312	2023-02-24	2022-09-17	3.37	3.96	3.48	7.9	0.009	0.94	5.0	0.06	17.82	0.01	2.045	13.54	5.14	8.4	91.2	0.4	-1.94	0.59	0.16	-0.05	3.5	0.004	0.85	0.0	0.04	17.35	0.01	2.073	20.42	0.70	8.6	91.2	0.2	-2.15	1.82	0.77	0.63	0.57	21955	2668	13	52	9	1	0	logfile
✔	8GWF	34311	2023-02-24	2022-09-17	3.39	3.99	3.49	3.6	0.009	0.94	5.0	0.06	17.82	0.01	2.045	13.54	5.14	8.4	91.2	0.4	-1.94	0.84	0.76	1.55	3.6	0.003	0.66	0.0	0.04	17.00	0.00	2.124	13.47	0.31	7.9	91.9	0.2	-1.35	1.46	0.86	0.83	1.64	21955	2668	13	52	9	1	0	logfile
✔	8GWE	34310	2023-02-24	2022-09-16	2.66	3.19	2.77	16.0	0.009	0.97	5.0	0.06	17.61	0.01	1.065	13.66	5.00	8.4	91.2	0.3	-1.93	0.39	0.09	0.45	10.1	0.003	0.74	0.0	0.04	17.58	0.00	1.950	15.87	3.34	8.5	91.3	0.2	-1.91	1.11	0.44	0.22	0.12	22040	2668	15	56	10	1	0	logfile
✔	8GWB	34308	2023-02-24	2022-09-16	2.75	2.95	2.85	25.0	0.009	1.07	1.0	0.05	16.02	0.01	1.556	16.84	2.25	7.5	92.3	0.2	-2.40	0.29	0.01	0.23	25.0	0.003	0.74	0.0	0.04	16.77	0.00	2.117	17.29	2.69	7.5	92.4	0.1	-1.54	1.60	0.34	0.15	0.46	21879	2655	16	54	10	7	0	logfile
✔	8GVK	32099	2023-02-17	2022-09-15	2.2	2.06	2.20	2.2	0.006	1.29	0.0	0.06	15.35	0.00	2.057	5.53	4.07	3.4	94.0	2.6	-1.54	0.65	0.80	5.76	2.1	0.003	0.77	0.0	0.04	15.42	0.00	2.211	9.90	2.62	4.3	94.9	0.9	-0.94	0.88	0.74	0.85	6.36	3567	476	8	0	0	19	0	logfile
✔	8GUY	34281	2023-02-21	2022-09-14	4.18	4.57	4.26	4.3	0.005	1.00	0.0	0.06	14.55	0.01	2.249	6.07	0.12	10.0	90.0	0.0	-4.23	0.83	0.80	—	4.3	0.003	0.69	0.0	0.04	13.80	0.00	1.983	12.29	0.25	9.3	90.7	0.0	-2.48	1.64	0.83	0.79	—	14222	1762	6	0	0	0	0	logfile
✔	8GUB	34272	2023-02-19	2022-09-11	2.73	2.94	2.83	3.0	0.008	0.62	0.0	0.04	14.24	0.00	1.994	34.40	0.17	4.8	95.2	0.0	-0.28	0.51	0.65	3.44	3.0	0.003	0.58	0.0	0.04	17.15	0.00	2.200	8.26	2.52	3.7	96.3	0.0	0.17	1.20	0.66	0.79	3.21	10358	1253	3	0	1	0	0	logfile
✔	8GU6	34270	2023-02-21	2022-09-10	3.1	3.33	3.14	3.4	0.002	0.53	0.0	0.04	17.38	0.00	2.091	13.05	0.14	5.6	94.4	0.0	-0.34	0.70	0.79	2.37	3.3	0.003	0.54	0.0	0.04	17.28	0.00	2.132	12.19	0.36	6.0	94.0	0.0	-0.12	0.29	0.69	0.79	2.29	15261	1870	5	50	4	0	0	logfile
✔	8GT6	34245	2023-02-17	2022-09-07	3.47	3.69	3.52	3.6	0.010	1.53	0.0	0.06	17.48	0.01	2.322	9.92	0.77	5.1	94.9	0.0	-4.60	0.63	0.82	2.34	3.6	0.003	0.82	0.0	0.04	17.65	0.00	2.269	7.77	0.58	4.2	95.8	0.0	-0.06	0.70	0.63	0.82	1.54	4922	618	3	0	1	0	0	logfile
✔	8GSZ	34244	2023-02-17	2022-09-07	3.65	3.14	3.68	3.8	0.006	0.86	0.0	0.05	15.61	0.01	2.241	12.76	0.39	2.7	97.3	0.0	-5.38	0.62	0.76	1.72	3.8	0.003	0.69	0.0	0.04	17.49	0.00	2.123	9.67	0.39	4.0	96.0	0.0	-0.70	0.76	0.62	0.76	0.90	4870	620	2	0	0	0	0	logfile
✔	8GSE	34233	2023-02-18	2022-09-06	3.7	3.78	3.73	3.8	0.005	0.68	0.0	0.05	13.93	0.01	2.246	5.81	0.00	5.9	94.1	0.0	-1.94	0.43	0.85	2.71	3.8	0.002	0.54	0.0	0.04	15.70	0.00	2.192	5.60	0.48	3.8	96.2	0.0	-1.18	1.41	0.41	0.83	2.23	7474	952	5	0	0	0	0	logfile
✔	8GS6	34221	2023-02-25	2022-09-05	2.86	3.44	2.87	3.3	0.004	0.59	0.0	0.05	14.61	0.00	2.140	6.25	0.00	4.4	95.6	0.0	-0.45	0.83	0.84	2.81	3.3	0.002	0.56	0.0	0.05	15.89	0.00	2.163	5.75	1.12	4.1	95.9	0.0	-0.01	0.34	0.83	0.85	2.66	24538	3058	11	0	41	0	0	logfile
✔	8GS2	34218	2023-02-22	2022-09-04	2.84	3.09	2.94	3.1	0.002	0.42	0.0	0.04	10.20	0.00	1.579	4.49	0.30	1.2	98.8	0.0	1.18	0.74	0.89	4.67	3.1	0.002	0.48	0.0	0.04	15.09	0.00	2.185	6.70	1.56	1.7	98.3	0.0	1.43	1.32	0.74	0.90	4.14	16935	1916	7	64	4	0	0	logfile
✔	8GQY	34203	2023-02-19	2022-08-31	3.4	2.82	3.40	3.6	0.005	0.66	0.0	0.04	12.58	0.00	2.117	7.22	5.67	3.6	96.4	0.0	-7.14	0.69	0.86	3.37	3.6	0.003	0.65	0.0	0.04	15.11	0.00	2.171	7.06	0.70	1.8	98.2	0.0	-0.57	1.39	0.66	0.86	2.19	9515	1265	5	0	0	0	0	logfile
✘	8GNJ	34166	2023-02-17	2022-08-24	3.78	3.60	3.67	3.6	0.012	1.34	0.0	0.07	15.38	0.01	1.811	12.03	0.00	4.6	95.4	0.0	-3.73	0.66	0.81	1.40	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5832	746	4	0	1	0	0	logfile
✔	8GNi	34165	2023-02-17	2022-08-24	3.74	3.26	3.54	3.5	0.007	1.04	0.0	0.06	14.15	0.01	1.977	10.24	0.00	5.7	94.3	0.0	-3.32	0.66	0.75	1.56	3.4	0.003	0.74	0.0	0.04	16.60	0.00	2.204	13.74	0.48	4.2	95.8	0.0	-0.53	0.68	0.66	0.75	1.55	5832	746	4	0	1	0	0	logfile
✔	8GNA	34158	2023-02-19	2022-08-23	2.8	3.23	2.81	3.2	0.003	0.58	0.0	0.05	15.03	0.00	2.125	13.00	0.00	6.8	93.2	0.0	-0.88	0.70	0.77	3.38	3.2	0.005	0.63	0.0	0.05	17.18	0.00	2.146	16.56	2.38	7.4	92.6	0.0	-0.66	0.36	0.69	0.78	3.31	10257	1188	4	49	4	0	0	logfile
✔	8GMU	34154	2023-02-17	2022-08-22	2.78	2.51	2.71	2.7	0.003	0.55	0.0	0.04	19.27	0.00	1.941	8.36	1.73	1.8	98.0	0.3	1.01	0.46	0.82	2.96	2.8	0.006	0.64	0.0	0.05	19.37	0.00	1.821	8.12	2.67	2.0	97.9	0.1	0.76	1.22	0.46	0.83	3.40	6214	797	6	6	4	0	0	logfile

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