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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6PP5 | 20419 | 2023-08-21 | 2019-07-05 | 3.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32118 | 2063 | 13 | 0 | 18 | 0 | 16112 | logfile |
✘ | 7RGM | 24452 | 2023-08-11 | 2021-07-15 | 2.8 | 2.86 | — | 2.9 | 0.014 | 1.70 | 0.0 | 0.08 | 15.75 | 0.01 | 2.328 | 1.94 | 3.63 | 5.2 | 94.6 | 0.3 | -1.77 | 0.62 | 0.86 | 3.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 59928 | 3872 | 16 | 0 | 32 | 0 | 29736 | logfile |
✘ | 6H4N | 0137 | 2023-08-30 | 2018-07-22 | 3.0 | 3.20 | — | 3.1 | 0.007 | 0.96 | 4.0 | 0.05 | 14.51 | 0.01 | 0.418 | 5.99 | 0.74 | 10.1 | 89.4 | 0.5 | -4.18 | 0.86 | 0.87 | 3.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 147282 | 6188 | 57 | 4636 | 0 | 0 | 0 | logfile |
✘ | 6SGA | 10177 | 2023-08-22 | 2019-08-03 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 137038 | 15423 | 77 | 463 | 790 | 0 | 0 | logfile |
✘ | 7D5i | 30582 | 2023-08-09 | 2020-09-26 | 2.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6232 | 793 | 3 | 0 | 3 | 0 | 0 | logfile |
✘ | 8DDW | 27344 | 2023-08-18 | 2022-06-19 | 4.7 | 4.19 | 4.62 | 4.0 | 0.003 | 0.53 | 0.0 | 0.04 | 14.47 | 0.00 | 2.179 | 11.42 | 8.35 | 5.4 | 94.5 | 0.1 | 0.15 | 0.72 | 0.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25869 | 3198 | 10 | 0 | 68 | 0 | 0 | logfile |
✘ | 5NUG | 3698 | 2023-08-26 | 2017-04-30 | 3.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -0.41 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 46232 | 5840 | 4 | 0 | 10 | 0 | 0 | logfile |
✘ | 7EDX | 31075 | 2023-08-20 | 2021-03-17 | 4.5 | 4.87 | — | 4.1 | 0.008 | 1.09 | 34.0 | 0.07 | 16.62 | 0.01 | 1.497 | 20.97 | 3.31 | 6.1 | 93.4 | 0.5 | -3.70 | 0.67 | 0.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 81790 | 9837 | 46 | 154 | 10 | 0 | 0 | logfile |
✘ | 6R93 | 4767 | 2023-08-17 | 2019-04-02 | 4.0 | 4.29 | — | 4.1 | 0.010 | 1.48 | 2.0 | 0.10 | 28.72 | 0.01 | 1.600 | 2.04 | 0.00 | 2.5 | 97.0 | 0.5 | 0.30 | 0.78 | 0.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22961 | 775 | 10 | 290 | 0 | 0 | 10123 | logfile |
✘ | 7DW9 | 30877 | 2023-08-11 | 2021-01-15 | 2.6 | 3.41 | — | 3.1 | 0.006 | 0.77 | 0.0 | 0.10 | 12.06 | 0.01 | 2.306 | 1.39 | 0.09 | 2.4 | 97.6 | 0.0 | -0.01 | 0.73 | 0.87 | 4.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10105 | 1283 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 6Q6i | 4468 | 2023-08-10 | 2018-12-11 | 3.7 | 3.77 | — | 3.8 | 0.009 | 1.22 | 0.0 | 0.06 | 17.03 | 0.01 | 2.244 | 8.63 | 1.89 | 16.7 | 83.0 | 0.3 | -5.81 | 0.70 | 0.74 | 2.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 57200 | 7490 | 10 | 0 | 10 | 0 | 0 | logfile |
✘ | 5o2R | 3730 | 2023-08-31 | 2017-05-22 | 3.4 | 3.45 | — | 3.4 | 0.011 | 1.26 | 7.0 | 0.06 | 15.47 | 0.01 | 0.776 | 7.13 | 1.03 | 11.6 | 87.9 | 0.5 | -5.11 | 0.77 | 0.80 | 2.61 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 147985 | 6205 | 58 | 4643 | 0 | 0 | 0 | logfile |
✘ | 6G53 | 4351 | 2023-08-27 | 2018-03-28 | 4.5 | 4.86 | — | 4.3 | 0.007 | 1.44 | 21.0 | 0.10 | 21.32 | 0.00 | 1.260 | 2.52 | 0.00 | 7.1 | 92.2 | 0.7 | -2.88 | 0.67 | 0.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 49052 | 5912 | 37 | 1659 | 0 | 0 | 0 | logfile |
✘ | 7E0J | 30934 | 2023-08-10 | 2021-01-28 | 3.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8140 | 672 | 6 | 0 | 56 | 0 | 0 | logfile |
✘ | 6MHZ | 9124 | 2023-08-10 | 2018-09-18 | 4.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7112 | 908 | 6 | 0 | 2 | 0 | 0 | logfile |
✘ | 7DR2 | 30823 | 2023-08-22 | 2020-12-25 | 3.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 89952 | 8588 | 76 | 0 | 438 | 0 | 0 | logfile |
✘ | 3JAF | 6346 | 2023-08-13 | 2015-06-08 | 3.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13865 | 1710 | 15 | 0 | 15 | 0 | 0 | logfile |
✘ | 6RW6 | 10033 | 2023-08-24 | 2019-06-04 | 2.75 | 2.81 | — | 2.7 | 0.011 | 0.96 | 0.0 | 0.06 | 9.75 | 0.01 | 2.148 | 4.16 | 0.00 | 2.2 | 97.8 | 0.0 | -3.68 | 0.85 | 0.87 | 4.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 98645 | 12425 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 7oWG | 13097 | 2023-08-12 | 2021-06-18 | 4.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 114114 | 7078 | 8 | 0 | 110 | 0 | 57040 | logfile |
✘ | 6NT5 | 0502 | 2023-08-09 | 2019-01-28 | 4.1 | 4.28 | — | 4.1 | 0.006 | 0.93 | 0.0 | 0.05 | 10.32 | 0.01 | 2.300 | 3.59 | 0.41 | 4.7 | 95.3 | 0.0 | -2.40 | 0.73 | 0.82 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4586 | 584 | 2 | 0 | 0 | 0 | 0 | logfile |