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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6Roi | 4973 | 2023-02-20 | 2019-05-13 | 3.7 | 3.83 | 3.74 | 3.8 | 0.008 | 1.12 | 0.0 | 0.06 | 16.54 | 0.01 | 1.709 | 5.05 | 0.23 | 5.0 | 95.0 | 0.0 | -5.18 | 0.69 | 0.80 | 1.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | -1.75 | — | — | — | 1.80 | 11775 | 1447 | 7 | 0 | 9 | 2 | 0 | logfile |
✘ | 6BWF | 7298 | 2023-02-24 | 2017-12-14 | 4.1 | 4.19 | — | 4.2 | 0.008 | 1.49 | 2.0 | 0.07 | 12.82 | 0.01 | 2.204 | 12.32 | 0.59 | 12.1 | 86.6 | 1.3 | -5.34 | 0.62 | 0.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22174 | 2584 | 4 | 0 | 480 | 0 | 0 | logfile |
✘ | 6JZo | 9898 | 2023-02-23 | 2019-05-03 | 3.28 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21405 | 2657 | 8 | 0 | 12 | 0 | 0 | logfile |
✘ | 7WTC | 32778 | 2023-02-26 | 2022-02-04 | 4.0 | 4.61 | — | 3.1 | 0.008 | 0.82 | 0.0 | 0.05 | 13.69 | 0.01 | 2.060 | 22.27 | 0.10 | 8.0 | 92.0 | 0.1 | -0.78 | 0.86 | 0.65 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28418 | 3661 | 8 | 0 | 6 | 0 | 0 | logfile |
✘ | 6oES | 20036 | 2023-02-22 | 2019-03-27 | 3.06 | 3.17 | — | 3.1 | 0.005 | 0.77 | 2.0 | 0.05 | 19.56 | 0.01 | 2.226 | 4.56 | 2.87 | 3.4 | 96.4 | 0.2 | -3.12 | 0.81 | 0.83 | 3.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16829 | 1784 | 14 | 128 | 4 | 2 | 0 | logfile |
✘ | 7D44 | 30569 | 2023-02-26 | 2020-09-22 | 4.0 | 4.14 | — | 4.0 | 0.006 | 0.86 | 0.0 | 0.05 | 14.78 | 0.00 | 2.049 | 20.50 | 0.28 | 16.3 | 83.6 | 0.1 | -5.25 | 0.80 | 0.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28391 | 3825 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 3JC6 | 6534 | 2023-02-24 | 2015-11-24 | 3.7 | 4.01 | — | 3.9 | 0.009 | 1.53 | 0.0 | 0.06 | 12.91 | 0.01 | 1.203 | 39.69 | 0.87 | 9.8 | 89.0 | 1.1 | -3.87 | 0.79 | 0.76 | 1.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23732 | 2953 | 12 | 0 | 1 | 0 | 0 | logfile |
✘ | 6AEi | 9615 | 2023-02-23 | 2018-08-05 | 2.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21142 | 2568 | 8 | 0 | 13 | 0 | 0 | logfile |
✘ | 8GNJ | 34166 | 2023-02-17 | 2022-08-24 | 3.78 | 3.60 | 3.67 | 3.6 | 0.012 | 1.34 | 0.0 | 0.07 | 15.38 | 0.01 | 1.811 | 12.03 | 0.00 | 4.6 | 95.4 | 0.0 | -3.73 | 0.66 | 0.81 | 1.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5832 | 746 | 4 | 0 | 1 | 0 | 0 | logfile |
✘ | 7X76 | 33033 | 2023-02-24 | 2022-03-09 | 3.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64334 | 3793 | 18 | 168 | 15 | 0 | 31436 | logfile |
✘ | 7DEG | 30657 | 2023-02-20 | 2020-11-04 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12852 | 1520 | 12 | 0 | 18 | 0 | 0 | logfile |
✘ | 6BWD | 7297 | 2023-02-24 | 2017-12-14 | 3.7 | 3.83 | — | 3.8 | 0.011 | 1.65 | 8.0 | 0.09 | 13.73 | 0.01 | 1.254 | 13.17 | 0.57 | 12.5 | 86.3 | 1.2 | -5.69 | 0.64 | 0.76 | 1.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23187 | 2600 | 12 | 0 | 509 | 30 | 0 | logfile |
✘ | 5MLV | 3527 | 2023-02-22 | 2016-12-07 | 4.5 | 4.47 | — | 4.4 | 0.010 | 1.21 | 0.0 | 0.06 | 17.43 | 0.01 | 2.060 | 8.31 | 0.20 | 9.0 | 91.0 | 0.0 | -4.85 | 0.67 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 56928 | 7218 | 36 | 6 | 24 | 0 | 0 | logfile |
✘ | 6DJN | 7937 | 2023-02-20 | 2018-05-25 | 3.1 | 3.26 | — | 3.2 | 0.011 | 0.95 | 0.0 | 0.06 | 10.67 | 0.01 | 2.106 | 5.53 | 0.00 | 5.4 | 94.6 | 0.0 | -4.61 | 0.69 | 0.86 | 4.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11768 | 1488 | 8 | 0 | 12 | 0 | 0 | logfile |
✘ | 6RoH | 4972 | 2023-02-20 | 2019-05-13 | 2.8 | 2.94 | 2.83 | 2.9 | 0.006 | 0.88 | 0.0 | 0.05 | 13.67 | 0.01 | 1.709 | 4.00 | 0.23 | 3.4 | 96.6 | 0.0 | -4.73 | 0.68 | 0.79 | 3.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11758 | 1449 | 7 | 0 | 9 | 2 | 0 | logfile |
✘ | 6HiQ | 0227 | 2023-02-21 | 2018-08-30 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16110 | 1925 | 20 | 0 | 30 | 0 | 0 | logfile |
✘ | 7E0i | 30933 | 2023-02-18 | 2021-01-28 | 3.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8033 | 677 | 6 | 0 | 58 | 0 | 0 | logfile |
✘ | 6PPL | 20442 | 2023-02-18 | 2019-07-08 | 3.02 | 3.14 | — | 3.1 | 0.010 | 0.99 | 0.0 | 0.25 | 14.17 | 0.01 | 1.917 | 3.20 | 0.23 | 2.7 | 97.3 | 0.0 | -6.00 | 0.74 | 0.86 | 4.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8155 | 980 | 6 | 0 | 4 | 0 | 0 | logfile |
✘ | 7DGZ | 30676 | 2023-02-23 | 2020-11-12 | 3.8 | 4.12 | — | 4.0 | 0.008 | 1.42 | 3.0 | 0.07 | 12.24 | 0.01 | 1.238 | 9.03 | 1.31 | 17.6 | 80.9 | 1.5 | -6.15 | 0.80 | 0.71 | 1.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 60921 | 7992 | 61 | 0 | 21 | 0 | 0 | logfile |
✘ | 7ZUB | 14971 | 2023-02-26 | 2022-05-12 | 2.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28082 | 1722 | 7 | 0 | 7 | 0 | 14035 | logfile |