Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7BoF	12241	2022-07-06	2021-01-25	2.92	3.17	2.92	2.9	0.008	0.60	0.0	0.04	14.40	0.00	1.228	9.81	0.00	3.6	96.4	0.0	-2.50	0.84	0.87	3.08	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32814	1238	13	1070	129	0	0	logfile
✘	7NYX	12657	2022-07-04	2021-03-23	4.6	7.95	4.57	3.3	0.003	0.60	0.0	0.04	17.25	0.00	1.228	11.25	0.00	3.4	96.6	0.0	1.74	0.88	0.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	70784	4186	18	104	6	0	34688	logfile
✘	7BoG	12242	2022-07-06	2021-01-25	2.75	3.15	2.81	2.9	0.006	0.56	0.0	0.04	13.85	0.00	1.228	5.94	0.00	3.0	97.0	0.0	-1.93	0.87	0.91	3.29	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	33589	1336	16	1071	105	0	0	logfile
✘	7NYW	12656	2022-07-08	2021-03-23	3.1	3.76	3.13	3.2	0.003	0.49	0.0	0.04	18.03	0.00	1.229	6.13	0.00	3.7	96.3	0.0	1.43	0.83	0.79	1.86	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	48568	2795	18	104	6	0	23780	logfile
✘	7MTQ	23994	2022-07-03	2021-05-13	3.65	2.61	—	2.2	0.011	0.84	1.0	0.05	13.55	0.01	1.257	8.45	0.56	3.2	96.8	0.0	0.26	0.70	0.73	2.03	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10388	1486	4	0	4	0	0	logfile
✘	7RH6	24456	2022-07-06	2021-07-16	3.5	3.79	—	3.7	0.011	2.22	9.0	0.06	17.00	0.01	1.060	16.16	1.14	7.5	92.2	0.3	-0.59	0.66	0.72	2.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	89469	5901	42	0	64	0	41917	logfile
✘	7AFi	11766	2022-07-06	2020-09-19	3.53	4.65	3.55	2.4	0.010	0.95	8.0	0.06	16.63	0.00	1.216	33.84	0.00	9.0	91.0	0.0	-2.95	0.91	0.89	0.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	33803	1387	14	1066	46	0	0	logfile
✘	7P1H	13159	2022-07-04	2021-07-01	3.9	4.12	—	3.9	0.005	1.01	0.0	0.05	14.14	0.01	2.016	12.45	0.00	5.7	94.3	0.0	-1.60	0.81	0.60	0.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13957	898	4	0	2	0	6917	logfile
✘	6XLH	22244	2022-07-04	2020-06-28	2.83	2.93	—	2.9	0.001	0.39	0.0	0.04	7.54	0.00	2.093	5.99	0.13	1.5	98.5	0.0	-3.84	0.73	0.80	3.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13608	1675	6	0	6	0	0	logfile
✘	7DH5	30678	2022-07-03	2020-11-12	3.16	3.27	3.08	3.3	0.008	0.77	0.0	0.05	13.89	0.00	1.186	10.70	0.00	5.6	94.4	0.0	-3.78	0.66	0.81	3.17	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7850	1027	5	0	1	0	0	logfile
✘	7oJJ	12953	2022-07-04	2021-05-16	3.5	4.03	3.58	3.5	0.006	0.66	2.0	0.06	13.63	0.00	2.009	9.58	0.12	11.4	88.6	0.0	-3.69	0.92	0.87	2.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14330	1785	1	0	2	0	0	logfile
✘	7oJH	12951	2022-07-03	2021-05-15	3.1	2.57	4.80	20.0	0.011	0.90	0.0	0.05	11.01	0.00	2.239	2.98	0.52	2.9	97.1	0.0	0.37	0.00	0.00	-0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8999	1138	4	0	5	0	0	logfile
✘	7AFN	11771	2022-07-04	2020-09-19	3.86	5.27	3.89	3.0	0.008	1.02	3.0	0.07	17.77	0.01	1.755	23.16	0.00	6.9	93.1	0.0	-1.93	0.90	0.83	0.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18520	1108	11	456	12	0	0	logfile
✘	7AFK	11768	2022-07-04	2020-09-19	4.9	5.45	4.73	3.0	0.007	0.89	1.0	0.05	18.26	0.00	1.519	42.50	0.00	8.4	91.6	0.0	-2.88	0.87	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18521	1108	11	456	13	0	0	logfile
✘	7E0J	30934	2022-07-03	2021-01-28	3.13	2.94	—	3.1	0.006	1.29	0.0	0.06	17.85	0.02	1.214	7.02	0.97	5.0	95.0	0.0	-2.78	0.59	0.82	2.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8140	672	6	0	56	0	0	logfile
✘	7KX7	23061	2022-07-03	2020-12-03	3.8	3.89	3.70	3.8	0.007	0.78	0.0	0.05	13.23	0.00	1.953	14.05	0.17	9.4	90.6	0.0	-2.63	0.83	0.83	2.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5828	729	3	7	2	0	0	logfile
✘	7EU8	31309	2022-07-04	2021-05-16	4.07	4.11	—	3.6	0.002	0.40	0.0	0.04	7.49	0.00	1.231	3.16	3.51	2.0	97.9	0.1	1.10	0.75	0.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18670	3010	8	0	8	0	0	logfile
✘	7AFD	11761	2022-07-04	2020-09-19	3.44	4.47	3.35	2.4	0.009	0.89	3.0	0.05	16.60	0.00	1.850	30.02	0.00	6.2	93.8	0.0	-2.70	0.89	0.85	0.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18531	1108	12	456	23	0	0	logfile
✘	7N0D	24104	2022-07-05	2021-05-25	2.5	3.26	—	3.2	0.005	0.84	0.0	0.05	13.20	0.01	1.396	4.36	0.00	1.1	98.9	0.0	-2.65	0.72	0.78	4.49	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21846	2572	26	76	28	4	0	logfile
✘	7RH7	24457	2022-07-06	2021-07-16	3.0	3.06	—	3.2	0.010	2.04	0.0	0.05	16.57	0.01	1.182	16.48	0.00	7.7	92.1	0.2	-0.61	0.55	0.70	2.84	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	93330	6072	44	0	68	0	44390	logfile

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