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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8GNJ | 34166 | 2023-02-17 | 2022-08-24 | 3.78 | 3.60 | 3.67 | 3.6 | 0.012 | 1.34 | 0.0 | 0.07 | 15.38 | 0.01 | 1.811 | 12.03 | 0.00 | 4.6 | 95.4 | 0.0 | -3.73 | 0.66 | 0.81 | 1.40 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5832 | 746 | 4 | 0 | 1 | 0 | 0 | logfile |
✘ | 7DH0 | 30677 | 2023-02-23 | 2020-11-12 | 4.2 | 4.70 | — | 4.5 | 0.007 | 1.27 | 0.0 | 0.06 | 11.24 | 0.01 | 1.514 | 6.99 | 0.60 | 16.3 | 83.1 | 0.6 | -5.67 | 0.84 | 0.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 60091 | 7904 | 57 | 0 | 17 | 0 | 0 | logfile |
✘ | 6JZo | 9898 | 2023-02-23 | 2019-05-03 | 3.28 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21405 | 2657 | 8 | 0 | 12 | 0 | 0 | logfile |
✘ | 6D6R | 7809 | 2023-02-28 | 2018-04-22 | 3.45 | 2.80 | — | 3.3 | 0.008 | 0.68 | 0.0 | 0.04 | 10.12 | 0.00 | 1.816 | 9.28 | 0.03 | 10.0 | 90.0 | 0.0 | -4.48 | 0.83 | 0.79 | 2.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31639 | 3889 | 17 | 61 | 3 | 0 | 0 | logfile |
✘ | 6LBH | 0869 | 2023-02-19 | 2019-11-14 | 3.7 | 3.79 | — | 3.8 | 0.006 | 0.82 | 0.0 | 0.05 | 13.62 | 0.00 | 2.079 | 18.56 | 0.20 | 7.7 | 92.2 | 0.2 | -2.87 | 0.75 | 0.83 | 2.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9219 | 1236 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 6BWD | 7297 | 2023-02-24 | 2017-12-14 | 3.7 | 3.83 | — | 3.8 | 0.011 | 1.65 | 8.0 | 0.09 | 13.73 | 0.01 | 1.254 | 13.17 | 0.57 | 12.5 | 86.3 | 1.2 | -5.69 | 0.64 | 0.76 | 1.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23187 | 2600 | 12 | 0 | 509 | 30 | 0 | logfile |
✘ | 6iGM | 9668 | 2023-02-24 | 2018-09-25 | 4.0 | 4.14 | — | 4.1 | 0.004 | 0.88 | 0.0 | 0.05 | 10.13 | 0.01 | 1.054 | 20.76 | 2.70 | 7.3 | 91.6 | 1.1 | -4.30 | 0.70 | 0.62 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24257 | 3054 | 9 | 0 | 62 | 0 | 0 | logfile |
✘ | 6AEi | 9615 | 2023-02-23 | 2018-08-05 | 2.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21142 | 2568 | 8 | 0 | 13 | 0 | 0 | logfile |
✘ | 6i53 | 4411 | 2023-02-21 | 2018-11-12 | 3.2 | 3.37 | 3.20 | 3.3 | 0.006 | 0.88 | 0.0 | 0.05 | 9.04 | 0.01 | 2.264 | 3.96 | 0.00 | 3.7 | 96.3 | 0.0 | -4.72 | 0.52 | 0.70 | 4.33 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15362 | 1821 | 16 | 0 | 34 | 0 | 0 | logfile |
✘ | 7WTC | 32778 | 2023-02-26 | 2022-02-04 | 4.0 | 4.61 | — | 3.1 | 0.008 | 0.82 | 0.0 | 0.05 | 13.69 | 0.01 | 2.060 | 22.27 | 0.10 | 8.0 | 92.0 | 0.1 | -0.78 | 0.86 | 0.65 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28418 | 3661 | 8 | 0 | 6 | 0 | 0 | logfile |
✘ | 6Hio | 0226 | 2023-02-21 | 2018-08-30 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16085 | 1925 | 20 | 0 | 30 | 0 | 0 | logfile |
✘ | 7YET | 33777 | 2023-02-20 | 2022-07-06 | 3.3 | 3.55 | — | 3.5 | 0.004 | 0.61 | 0.0 | 0.04 | 14.41 | 0.01 | 2.204 | 7.29 | 0.23 | 5.9 | 93.7 | 0.4 | 1.31 | 0.70 | 0.81 | 2.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11862 | 1493 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 6DG7 | 7882 | 2023-02-22 | 2018-05-17 | 3.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16720 | 1955 | 29 | 0 | 40 | 5 | 0 | logfile |
✘ | 7X76 | 33033 | 2023-02-24 | 2022-03-09 | 3.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64334 | 3793 | 18 | 168 | 15 | 0 | 31436 | logfile |
✘ | 6RoH | 4972 | 2023-02-20 | 2019-05-13 | 2.8 | 2.94 | 2.83 | 2.9 | 0.006 | 0.88 | 0.0 | 0.05 | 13.67 | 0.01 | 1.709 | 4.00 | 0.23 | 3.4 | 96.6 | 0.0 | -4.73 | 0.68 | 0.79 | 3.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11758 | 1449 | 7 | 0 | 9 | 2 | 0 | logfile |
✘ | 6HiQ | 0227 | 2023-02-21 | 2018-08-30 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16110 | 1925 | 20 | 0 | 30 | 0 | 0 | logfile |
✘ | 6PM5 | 20388 | 2023-02-21 | 2019-07-01 | 3.1 | 3.38 | — | 3.4 | 0.001 | 0.42 | 0.0 | 0.06 | 6.80 | 0.00 | 2.275 | 4.99 | 0.00 | 2.4 | 97.6 | 0.0 | -4.42 | 0.52 | 0.78 | 3.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13975 | 1735 | 15 | 0 | 15 | 0 | 0 | logfile |
✘ | 7DEG | 30657 | 2023-02-20 | 2020-11-04 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12852 | 1520 | 12 | 0 | 18 | 0 | 0 | logfile |
✘ | 7DGZ | 30676 | 2023-02-23 | 2020-11-12 | 3.8 | 4.12 | — | 4.0 | 0.008 | 1.42 | 3.0 | 0.07 | 12.24 | 0.01 | 1.238 | 9.03 | 1.31 | 17.6 | 80.9 | 1.5 | -6.15 | 0.80 | 0.71 | 1.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 60921 | 7992 | 61 | 0 | 21 | 0 | 0 | logfile |
✘ | 7ZUB | 14971 | 2023-02-26 | 2022-05-12 | 2.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28082 | 1722 | 7 | 0 | 7 | 0 | 14035 | logfile |