Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6NQ2	0479	2022-07-03	2019-01-18	3.4	3.50	—	3.5	0.009	0.94	0.0	0.06	14.40	0.01	1.185	3.85	0.36	5.1	94.9	0.0	-5.59	0.58	0.83	2.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10140	1242	4	0	2	0	0	logfile
✘	3J5Q	5776	2022-07-04	2013-10-28	3.8	4.64	—	7.1	0.010	1.45	0.0	0.09	20.92	0.01	0.275	105.06	29.72	6.4	93.1	0.5	-0.53	0.58	0.44	-0.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18264	2324	8	0	168	0	0	logfile
✘	6J8J	9782	2022-07-03	2019-01-19	3.2	3.36	—	3.3	0.010	1.50	0.0	0.10	21.93	0.01	1.349	71.09	28.80	2.5	96.2	1.3	2.79	0.59	0.76	1.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11764	1433	6	0	12	0	0	logfile
✘	6NQ0	0477	2022-07-03	2019-01-18	3.7	3.84	—	3.8	0.005	0.83	0.0	0.05	14.50	0.01	1.184	3.70	0.54	4.4	95.6	0.0	-6.31	0.59	0.84	2.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10140	1242	4	0	2	0	0	logfile
✘	3J5R	5777	2022-07-04	2013-10-28	4.2	4.88	—	7.2	0.011	1.57	0.0	0.09	20.25	0.01	1.204	84.60	28.64	7.8	91.0	1.2	-0.91	0.58	0.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17564	2324	4	0	44	0	0	logfile
✘	6PQo	20449	2022-07-04	2019-07-09	2.88	3.25	2.81	3.2	0.011	1.26	0.0	0.08	15.20	0.01	1.196	7.75	0.58	3.5	96.5	0.0	-2.93	0.57	0.72	3.08	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20312	2448	8	0	36	0	0	logfile
✘	6JND	9848	2022-07-03	2019-03-14	3.9	3.92	—	3.9	0.006	0.82	0.0	0.05	15.64	0.01	2.316	4.09	11.73	5.8	94.2	0.0	-5.73	0.43	0.77	1.85	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3294	419	1	0	1	0	0	logfile
✘	6DZW	8941	2022-07-03	2018-07-05	4.3	4.31	5.22	4.9	0.003	0.84	0.0	0.09	13.51	0.01	1.365	3.87	0.36	3.2	96.8	0.0	-4.99	0.45	0.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7829	988	5	0	4	0	0	logfile
✘	5NJT	3656	2022-07-06	2017-03-29	3.8	4.18	4.07	4.1	0.008	1.18	0.0	0.06	17.85	0.01	1.178	8.97	1.58	14.2	85.2	0.6	-5.34	0.76	0.78	1.08	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	133097	5596	51	4579	0	0	0	logfile
✘	6TY8	20581	2022-07-04	2019-08-08	3.0	3.11	—	3.1	0.007	0.94	1.0	0.06	9.57	0.01	1.184	5.02	0.75	3.0	96.9	0.1	-3.24	0.57	0.86	3.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13607	1694	3	0	1	0	0	logfile
✘	6oST	20188	2022-07-08	2019-05-02	4.2	5.81	—	3.3	0.009	0.98	3.0	0.05	16.39	0.01	1.170	18.93	0.37	6.9	93.0	0.1	-3.80	0.92	0.87	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	146620	5996	61	4642	13	0	0	logfile
✘	6NT4	0501	2022-07-03	2019-01-28	3.5	4.11	3.77	4.0	0.006	1.07	1.0	0.13	16.47	0.00	1.319	12.94	0.64	12.9	86.7	0.4	-4.72	0.51	0.76	1.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11924	1406	4	0	20	0	0	logfile
✘	6HiN	0225	2022-07-04	2018-08-30	4.1	4.24	—	4.2	0.009	1.15	0.0	0.07	11.82	0.01	1.347	6.61	0.32	1.5	98.5	0.0	-4.98	0.81	0.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14220	1675	10	0	30	0	0	logfile
✘	6NR3	0488	2022-07-05	2019-01-22	3.4	3.65	3.39	3.6	0.009	1.06	0.0	0.06	9.97	0.01	1.184	6.63	0.54	4.1	95.9	0.0	-2.09	0.66	0.75	3.10	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25180	3232	8	0	196	0	0	logfile
✘	3JCA	6441	2022-07-03	2015-11-24	4.8	4.59	—	4.5	0.012	1.49	0.0	0.07	18.62	0.01	2.370	3.54	0.00	7.2	92.8	0.0	-1.87	0.75	0.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11466	1226	16	80	4	0	0	logfile
✘	6oo5	20146	2022-07-04	2019-04-22	4.2	4.30	4.10	4.2	0.012	1.05	0.0	0.06	9.23	0.01	2.246	3.36	0.00	4.5	95.5	0.0	-2.74	0.65	0.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17548	2440	8	0	4	0	0	logfile
✘	6NR2	0487	2022-07-05	2019-01-22	4.0	4.24	3.95	4.1	0.007	0.98	0.0	0.05	9.78	0.01	1.185	5.92	0.17	4.1	95.9	0.0	-2.86	0.68	0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25788	3256	8	0	188	0	0	logfile
✘	6C9A	7435	2022-07-03	2018-01-25	3.2	3.34	—	3.3	0.009	1.04	0.0	0.06	10.18	0.01	1.176	2.82	0.00	5.0	95.0	0.0	-4.37	0.59	0.82	3.10	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12182	1446	4	0	8	0	0	logfile
✘	6oUL	20203	2022-07-06	2019-05-04	3.4	3.56	—	3.6	0.014	1.18	0.0	0.06	14.85	0.01	1.353	34.23	0.31	12.2	87.6	0.3	-4.17	0.68	0.79	2.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	31927	3751	12	117	6	0	0	logfile
✘	6N58	0349	2022-07-06	2018-11-21	3.78	3.90	—	3.9	0.012	1.19	0.0	0.06	10.58	0.01	1.355	38.66	0.37	14.7	84.9	0.4	-4.74	0.73	0.82	2.09	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30189	3833	11	0	8	0	0	logfile

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