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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6NQ2 | 0479 | 2022-07-03 | 2019-01-18 | 3.4 | 3.50 | — | 3.5 | 0.009 | 0.94 | 0.0 | 0.06 | 14.40 | 0.01 | 1.185 | 3.85 | 0.36 | 5.1 | 94.9 | 0.0 | -5.59 | 0.58 | 0.83 | 2.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10140 | 1242 | 4 | 0 | 2 | 0 | 0 | logfile |
✘ | 3J5Q | 5776 | 2022-07-04 | 2013-10-28 | 3.8 | 4.64 | — | 7.1 | 0.010 | 1.45 | 0.0 | 0.09 | 20.92 | 0.01 | 0.275 | 105.06 | 29.72 | 6.4 | 93.1 | 0.5 | -0.53 | 0.58 | 0.44 | -0.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18264 | 2324 | 8 | 0 | 168 | 0 | 0 | logfile |
✘ | 6J8J | 9782 | 2022-07-03 | 2019-01-19 | 3.2 | 3.36 | — | 3.3 | 0.010 | 1.50 | 0.0 | 0.10 | 21.93 | 0.01 | 1.349 | 71.09 | 28.80 | 2.5 | 96.2 | 1.3 | 2.79 | 0.59 | 0.76 | 1.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11764 | 1433 | 6 | 0 | 12 | 0 | 0 | logfile |
✘ | 6NQ0 | 0477 | 2022-07-03 | 2019-01-18 | 3.7 | 3.84 | — | 3.8 | 0.005 | 0.83 | 0.0 | 0.05 | 14.50 | 0.01 | 1.184 | 3.70 | 0.54 | 4.4 | 95.6 | 0.0 | -6.31 | 0.59 | 0.84 | 2.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10140 | 1242 | 4 | 0 | 2 | 0 | 0 | logfile |
✘ | 3J5R | 5777 | 2022-07-04 | 2013-10-28 | 4.2 | 4.88 | — | 7.2 | 0.011 | 1.57 | 0.0 | 0.09 | 20.25 | 0.01 | 1.204 | 84.60 | 28.64 | 7.8 | 91.0 | 1.2 | -0.91 | 0.58 | 0.45 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17564 | 2324 | 4 | 0 | 44 | 0 | 0 | logfile |
✘ | 6PQo | 20449 | 2022-07-04 | 2019-07-09 | 2.88 | 3.25 | 2.81 | 3.2 | 0.011 | 1.26 | 0.0 | 0.08 | 15.20 | 0.01 | 1.196 | 7.75 | 0.58 | 3.5 | 96.5 | 0.0 | -2.93 | 0.57 | 0.72 | 3.08 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20312 | 2448 | 8 | 0 | 36 | 0 | 0 | logfile |
✘ | 6JND | 9848 | 2022-07-03 | 2019-03-14 | 3.9 | 3.92 | — | 3.9 | 0.006 | 0.82 | 0.0 | 0.05 | 15.64 | 0.01 | 2.316 | 4.09 | 11.73 | 5.8 | 94.2 | 0.0 | -5.73 | 0.43 | 0.77 | 1.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3294 | 419 | 1 | 0 | 1 | 0 | 0 | logfile |
✘ | 6DZW | 8941 | 2022-07-03 | 2018-07-05 | 4.3 | 4.31 | 5.22 | 4.9 | 0.003 | 0.84 | 0.0 | 0.09 | 13.51 | 0.01 | 1.365 | 3.87 | 0.36 | 3.2 | 96.8 | 0.0 | -4.99 | 0.45 | 0.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7829 | 988 | 5 | 0 | 4 | 0 | 0 | logfile |
✘ | 5NJT | 3656 | 2022-07-06 | 2017-03-29 | 3.8 | 4.18 | 4.07 | 4.1 | 0.008 | 1.18 | 0.0 | 0.06 | 17.85 | 0.01 | 1.178 | 8.97 | 1.58 | 14.2 | 85.2 | 0.6 | -5.34 | 0.76 | 0.78 | 1.08 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 133097 | 5596 | 51 | 4579 | 0 | 0 | 0 | logfile |
✘ | 6TY8 | 20581 | 2022-07-04 | 2019-08-08 | 3.0 | 3.11 | — | 3.1 | 0.007 | 0.94 | 1.0 | 0.06 | 9.57 | 0.01 | 1.184 | 5.02 | 0.75 | 3.0 | 96.9 | 0.1 | -3.24 | 0.57 | 0.86 | 3.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13607 | 1694 | 3 | 0 | 1 | 0 | 0 | logfile |
✘ | 6oST | 20188 | 2022-07-08 | 2019-05-02 | 4.2 | 5.81 | — | 3.3 | 0.009 | 0.98 | 3.0 | 0.05 | 16.39 | 0.01 | 1.170 | 18.93 | 0.37 | 6.9 | 93.0 | 0.1 | -3.80 | 0.92 | 0.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 146620 | 5996 | 61 | 4642 | 13 | 0 | 0 | logfile |
✘ | 6NT4 | 0501 | 2022-07-03 | 2019-01-28 | 3.5 | 4.11 | 3.77 | 4.0 | 0.006 | 1.07 | 1.0 | 0.13 | 16.47 | 0.00 | 1.319 | 12.94 | 0.64 | 12.9 | 86.7 | 0.4 | -4.72 | 0.51 | 0.76 | 1.58 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11924 | 1406 | 4 | 0 | 20 | 0 | 0 | logfile |
✘ | 6HiN | 0225 | 2022-07-04 | 2018-08-30 | 4.1 | 4.24 | — | 4.2 | 0.009 | 1.15 | 0.0 | 0.07 | 11.82 | 0.01 | 1.347 | 6.61 | 0.32 | 1.5 | 98.5 | 0.0 | -4.98 | 0.81 | 0.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14220 | 1675 | 10 | 0 | 30 | 0 | 0 | logfile |
✘ | 6NR3 | 0488 | 2022-07-05 | 2019-01-22 | 3.4 | 3.65 | 3.39 | 3.6 | 0.009 | 1.06 | 0.0 | 0.06 | 9.97 | 0.01 | 1.184 | 6.63 | 0.54 | 4.1 | 95.9 | 0.0 | -2.09 | 0.66 | 0.75 | 3.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25180 | 3232 | 8 | 0 | 196 | 0 | 0 | logfile |
✘ | 3JCA | 6441 | 2022-07-03 | 2015-11-24 | 4.8 | 4.59 | — | 4.5 | 0.012 | 1.49 | 0.0 | 0.07 | 18.62 | 0.01 | 2.370 | 3.54 | 0.00 | 7.2 | 92.8 | 0.0 | -1.87 | 0.75 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11466 | 1226 | 16 | 80 | 4 | 0 | 0 | logfile |
✘ | 6oo5 | 20146 | 2022-07-04 | 2019-04-22 | 4.2 | 4.30 | 4.10 | 4.2 | 0.012 | 1.05 | 0.0 | 0.06 | 9.23 | 0.01 | 2.246 | 3.36 | 0.00 | 4.5 | 95.5 | 0.0 | -2.74 | 0.65 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17548 | 2440 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 6NR2 | 0487 | 2022-07-05 | 2019-01-22 | 4.0 | 4.24 | 3.95 | 4.1 | 0.007 | 0.98 | 0.0 | 0.05 | 9.78 | 0.01 | 1.185 | 5.92 | 0.17 | 4.1 | 95.9 | 0.0 | -2.86 | 0.68 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25788 | 3256 | 8 | 0 | 188 | 0 | 0 | logfile |
✘ | 6C9A | 7435 | 2022-07-03 | 2018-01-25 | 3.2 | 3.34 | — | 3.3 | 0.009 | 1.04 | 0.0 | 0.06 | 10.18 | 0.01 | 1.176 | 2.82 | 0.00 | 5.0 | 95.0 | 0.0 | -4.37 | 0.59 | 0.82 | 3.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12182 | 1446 | 4 | 0 | 8 | 0 | 0 | logfile |
✘ | 6oUL | 20203 | 2022-07-06 | 2019-05-04 | 3.4 | 3.56 | — | 3.6 | 0.014 | 1.18 | 0.0 | 0.06 | 14.85 | 0.01 | 1.353 | 34.23 | 0.31 | 12.2 | 87.6 | 0.3 | -4.17 | 0.68 | 0.79 | 2.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31927 | 3751 | 12 | 117 | 6 | 0 | 0 | logfile |
✘ | 6N58 | 0349 | 2022-07-06 | 2018-11-21 | 3.78 | 3.90 | — | 3.9 | 0.012 | 1.19 | 0.0 | 0.06 | 10.58 | 0.01 | 1.355 | 38.66 | 0.37 | 14.7 | 84.9 | 0.4 | -4.74 | 0.73 | 0.82 | 2.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30189 | 3833 | 11 | 0 | 8 | 0 | 0 | logfile |