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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 7W0M | 32244 | 2024-03-15 | 2021-11-18 | 3.71 | 2.51 | 3.74 | 2.2 | 0.004 | 0.76 | 0.0 | 0.05 | 14.11 | 0.00 | 2.230 | 11.46 | 0.00 | 5.6 | 94.4 | 0.0 | -1.90 | 0.73 | 0.74 | 2.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8929 | 1134 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 7V7N | 31775 | 2024-03-19 | 2021-08-21 | 2.9 | 3.77 | — | 3.2 | 0.005 | 0.62 | 0.0 | 0.05 | 13.98 | 0.00 | 2.171 | 6.62 | 0.00 | 5.4 | 94.4 | 0.1 | 0.11 | 0.89 | 0.87 | 2.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25430 | 3101 | 42 | 0 | 85 | 0 | 0 | logfile |
✘ | 6CSX | 7609 | 2024-03-19 | 2018-03-21 | 3.0 | 3.08 | — | 3.1 | 0.009 | 1.21 | 3.0 | 0.06 | 13.61 | 0.01 | 1.815 | 9.08 | 2.42 | 5.8 | 93.7 | 0.5 | -5.28 | 0.68 | 0.86 | 3.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23232 | 2999 | 6 | 0 | 19 | 0 | 0 | logfile |
✘ | 8F68 | 28877 | 2024-03-14 | 2022-11-16 | 3.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9666 | 1198 | 6 | 0 | 6 | 0 | 0 | logfile |
✘ | 7VFU | 31959 | 2024-03-18 | 2021-09-13 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19946 | 2409 | 9 | 0 | 41 | 0 | 0 | logfile |
✘ | 7UB5 | 26435 | 2024-03-19 | 2022-03-14 | 3.35 | 3.64 | 3.34 | 3.5 | 0.004 | 0.67 | 0.0 | 0.05 | 13.35 | 0.01 | 2.287 | 3.61 | 0.00 | 3.5 | 96.5 | 0.0 | -0.85 | 0.85 | 0.87 | 3.11 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24923 | 3104 | 16 | 0 | 47 | 0 | 0 | logfile |
✘ | 7Z18 | 14444 | 2024-03-23 | 2022-02-24 | 1.98 | 2.40 | 2.04 | 2.3 | 0.008 | 0.94 | 0.0 | 0.06 | 15.45 | 0.01 | 1.726 | 3.36 | 1.19 | 1.9 | 98.1 | 0.0 | 1.45 | 0.79 | 0.82 | 5.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37659 | 2432 | 18 | 0 | 10 | 2 | 18660 | logfile |
✘ | 7UL4 | 26591 | 2024-03-10 | 2022-04-03 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 2524 | 351 | 3 | 0 | 1 | 4 | 0 | logfile |
✘ | 6U0N | 20608 | 2024-03-18 | 2019-08-14 | 3.5 | 3.79 | — | 3.6 | 0.008 | 0.91 | 0.0 | 0.06 | 15.22 | 0.01 | 2.242 | 6.72 | 0.56 | 9.6 | 90.3 | 0.1 | -5.29 | 0.79 | 0.83 | 2.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19322 | 2489 | 23 | 0 | 43 | 0 | 0 | logfile |
✘ | 8DJK | 27460 | 2024-03-11 | 2022-06-30 | 3.33 | 3.77 | 3.32 | 3.7 | 0.029 | 1.52 | 1.0 | 1.03 | 32.03 | 0.01 | 1.327 | 7.25 | 0.82 | 5.0 | 95.0 | 0.0 | -1.84 | 0.48 | 0.73 | 2.65 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7091 | 870 | 7 | 0 | 8 | 0 | 0 | logfile |
✘ | 7M5Y | 23685 | 2024-03-17 | 2021-03-25 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15447 | 1000 | 1 | 0 | 24 | 8 | 7534 | logfile |
✘ | 8Hii | 34817 | 2024-03-11 | 2022-11-20 | 3.57 | 2.49 | 3.54 | 3.0 | 0.004 | 0.80 | 0.0 | 0.05 | 9.45 | 0.01 | 2.260 | 3.48 | 0.00 | 5.4 | 94.6 | 0.0 | -3.43 | 0.72 | 0.70 | 2.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8212 | 1055 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 6JPA | 9868 | 2024-03-18 | 2019-03-26 | 2.6 | 2.76 | — | 2.8 | 0.013 | 1.51 | 3.0 | 0.12 | 19.06 | 0.01 | 1.921 | 38.35 | 11.40 | 8.8 | 89.5 | 1.7 | -3.83 | 0.54 | 0.61 | 1.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22232 | 2694 | 14 | 0 | 42 | 0 | 0 | logfile |
✘ | 7BYL | 30244 | 2024-03-17 | 2020-04-23 | 2.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16332 | 2000 | 16 | 0 | 8 | 12 | 0 | logfile |
✘ | 7UK4 | 26574 | 2024-03-16 | 2022-03-31 | 1.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14487 | 1856 | 6 | 0 | 2 | 390 | 0 | logfile |
✘ | 6i7T | 4428 | 2024-03-23 | 2018-11-17 | 4.61 | 4.75 | 4.92 | 4.6 | 0.006 | 1.17 | 6.0 | 0.07 | 13.63 | 0.01 | 2.245 | 7.08 | 2.54 | 12.0 | 87.5 | 0.4 | -4.32 | 0.74 | 0.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37004 | 4682 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 6JPB | 9869 | 2024-03-18 | 2019-03-26 | 2.9 | 3.09 | — | 3.1 | 0.015 | 1.48 | 3.0 | 0.12 | 16.40 | 0.01 | 1.739 | 21.16 | 4.38 | 8.5 | 91.1 | 0.4 | -4.25 | 0.61 | 0.77 | 2.33 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21989 | 2694 | 14 | 0 | 35 | 0 | 0 | logfile |
✘ | 7Z17 | 14443 | 2024-03-23 | 2022-02-24 | 2.57 | 2.96 | 2.68 | 2.9 | 0.005 | 0.53 | 0.0 | 0.04 | 10.98 | 0.00 | 1.726 | 6.80 | 0.84 | 2.9 | 97.1 | 0.0 | 1.01 | 0.72 | 0.77 | 3.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37592 | 2432 | 14 | 0 | 5 | 0 | 18669 | logfile |
✘ | 8GRX | 34216 | 2024-03-11 | 2022-09-02 | 3.0 | 3.20 | 2.99 | 3.2 | 0.007 | 1.26 | 0.0 | 0.05 | 12.30 | 0.00 | 2.373 | 6.41 | 0.22 | 3.5 | 96.2 | 0.4 | -0.43 | 0.72 | 0.81 | 3.45 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8328 | 1056 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 8F6E | 28881 | 2024-03-15 | 2022-11-16 | 3.8 | 4.02 | 3.70 | 4.0 | 0.003 | 0.55 | 0.0 | 0.04 | 13.52 | 0.00 | 2.060 | 5.75 | 0.00 | 5.4 | 94.2 | 0.4 | -0.77 | 0.72 | 0.75 | 2.20 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10478 | 1366 | 8 | 0 | 8 | 0 | 0 | logfile |