Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6RRS	4989	2022-05-16	2019-05-20	3.9	4.30	4.41	3.8	0.013	2.10	0.0	0.00	2.04	0.01	2.364	0.79	0.00	3.9	95.3	0.8	-0.85	0.56	0.64	—	3.8	0.004	0.88	0.0	0.00	7.55	0.00	2.175	1.89	0.00	14.6	85.4	0.0	-1.44	2.05	0.80	0.71	—	93060	23220	180	0	0	0	0	logfile
✔	6ZQN	11369	2022-05-15	2020-07-10	4.0	3.59	—	3.5	0.008	0.85	0.0	0.05	15.11	0.00	1.537	13.59	0.02	8.6	91.4	0.0	-1.45	0.69	0.77	—	3.5	0.004	0.57	0.0	0.04	15.65	0.00	1.742	10.00	0.14	5.4	94.6	0.0	-0.06	0.37	0.69	0.77	—	80631	5165	42	0	16	17	40551	logfile
✔	6Uo9	20823	2022-05-13	2019-10-14	4.8	5.30	—	4.9	0.006	1.36	1.0	0.07	13.42	0.01	2.227	6.52	1.07	8.0	92.0	0.0	-3.80	0.81	0.80	—	4.8	0.003	0.74	0.0	0.05	13.06	0.00	2.210	11.31	0.00	6.5	93.5	0.0	-0.29	0.62	0.81	0.81	—	9915	1365	9	0	14	0	0	logfile
✘	7JMG	22393	2022-05-14	2020-07-31	4.5	7.15	—	4.3	0.005	0.93	0.0	0.05	9.82	0.01	1.373	7.47	0.27	10.3	89.6	0.1	-4.77	0.57	0.34	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	120756	13500	12	0	3608	0	0	logfile
✔	6VFK	21185	2022-05-17	2020-01-05	4.25	4.39	4.20	4.3	0.021	1.41	0.0	0.09	10.30	0.01	2.389	0.89	0.00	1.3	98.7	0.0	2.59	0.84	0.81	—	4.2	0.003	0.57	0.0	0.04	13.24	0.00	2.187	9.56	0.00	1.8	98.0	0.2	3.96	1.03	0.84	0.84	—	37032	4764	24	0	0	0	0	logfile
✘	6KNG	0731	2022-05-12	2019-08-05	2.85	3.15	—	3.1	0.005	0.65	0.0	0.05	14.34	0.00	2.093	5.36	3.68	0.9	99.1	0.0	-2.31	0.83	0.91	4.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7749	1002	6	0	6	0	0	logfile
✔	6VQ7	21318	2022-05-13	2020-02-04	4.0	4.63	—	4.2	0.009	0.98	2.0	0.06	10.86	0.01	2.219	3.92	0.61	2.5	97.3	0.2	0.65	0.79	0.72	—	4.2	0.004	0.86	0.0	0.05	14.28	0.00	1.949	21.56	0.46	4.3	95.7	0.0	0.70	1.47	0.82	0.81	—	62325	8454	35	0	2	0	0	logfile
✘	6KPJ	0748	2022-05-13	2019-08-15	2.56	3.82	—	3.3	0.014	0.91	0.0	0.06	13.08	0.00	1.218	8.38	0.00	6.7	93.3	0.0	-4.33	0.85	0.86	3.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	62845	3936	24	0	48	0	31225	logfile
✔	7JJJ	22354	2022-05-12	2020-07-26	4.5	4.63	4.47	4.5	0.020	1.77	0.0	0.13	9.94	0.01	2.377	1.07	0.07	2.0	98.0	0.0	0.68	0.79	0.80	—	4.5	0.006	0.78	0.0	0.05	12.27	0.00	2.113	15.12	0.00	6.0	94.0	0.0	-0.66	1.45	0.80	0.84	—	54614	6674	92	0	182	0	0	logfile
✔	7JMJ	22396	2022-05-14	2020-07-31	4.5	5.51	—	4.3	0.007	1.08	0.0	0.05	10.58	0.01	1.373	10.02	0.62	11.3	88.5	0.3	-4.67	0.56	0.31	—	4.3	0.004	0.97	4.0	0.05	11.79	0.01	2.058	21.05	0.00	11.7	88.1	0.2	-3.79	0.81	0.78	0.63	—	120756	13500	12	0	3608	0	0	logfile
✔	6ZPo	11342	2022-05-15	2020-07-09	4.0	3.38	—	3.3	0.007	0.81	0.0	0.04	15.51	0.00	1.497	10.49	0.00	6.0	94.0	0.0	-0.81	0.67	0.76	—	3.3	0.003	0.55	0.0	0.04	16.14	0.00	1.755	8.02	0.17	3.9	96.1	0.0	0.41	1.12	0.67	0.75	—	80353	5150	42	0	16	17	40405	logfile
✔	6ZJL	11235	2022-05-17	2020-06-29	4.3	4.31	—	4.3	0.021	2.33	37.0	1.41	15.36	0.02	2.162	1.06	2.43	9.6	87.6	2.9	-4.76	0.55	0.77	—	4.3	0.014	2.36	3.0	0.44	14.44	0.01	1.559	17.68	0.03	5.6	94.1	0.2	-0.81	2.04	0.56	0.79	—	36057	4646	20	0	10	0	0	logfile
✔	6X0V	21985	2022-05-12	2020-05-17	4.5	4.37	—	4.4	0.003	0.62	1.0	0.04	11.58	0.00	2.285	15.16	4.48	3.5	96.0	0.5	-2.45	0.40	0.74	—	4.4	0.002	0.46	0.0	0.04	13.09	0.00	2.230	19.17	0.00	6.0	94.0	0.0	2.59	1.22	0.40	0.75	—	1384	211	4	0	0	0	62	logfile
✘	6YXR	10995	2022-05-13	2020-05-03	3.4	3.53	3.43	3.5	0.019	2.23	2.0	0.13	19.52	0.02	1.197	27.04	0.44	4.1	95.7	0.3	-3.53	0.67	0.76	2.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	31910	2783	20	0	194	0	0	logfile
✔	6VoH	21264	2022-05-17	2020-01-30	4.16	3.96	—	4.0	0.005	0.99	0.0	0.05	15.53	0.01	2.172	14.17	0.49	7.7	92.0	0.3	-3.96	0.70	0.74	—	3.9	0.006	0.87	0.0	0.05	15.25	0.01	2.108	19.11	0.02	8.2	91.7	0.2	-1.55	0.67	0.69	0.72	—	39159	5193	31	0	5	0	0	logfile
✔	6W4o	21535	2022-05-16	2020-03-11	4.8	5.05	4.72	4.7	0.004	0.77	1.0	0.05	10.85	0.00	0.834	16.31	0.91	3.0	96.7	0.2	-1.53	0.83	0.70	—	4.7	0.005	0.80	0.0	0.05	12.92	0.01	2.115	26.69	0.00	2.7	97.1	0.2	0.29	1.37	0.89	0.83	—	14475	1789	13	0	0	0	0	logfile
✔	6XJV	22215	2022-05-16	2020-06-24	4.17	4.32	—	4.1	0.006	1.01	0.0	0.06	10.81	0.01	2.238	4.38	0.27	5.0	94.9	0.2	-3.26	0.71	0.75	—	4.1	0.003	0.69	0.0	0.04	13.09	0.00	2.150	13.16	0.00	4.7	95.3	0.1	0.32	1.32	0.72	0.79	—	29921	3649	20	0	0	0	0	logfile
✘	6VXK	21442	2022-05-14	2020-02-22	3.1	3.57	—	3.2	0.011	0.83	0.0	0.05	14.64	0.00	2.122	15.48	8.05	10.5	89.5	0.0	-3.69	0.86	0.88	3.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17418	2254	8	0	18	0	0	logfile
✔	6XKU	22225	2022-05-13	2020-06-27	4.2	4.32	—	4.2	0.009	1.00	1.0	0.07	13.77	0.01	1.987	25.70	0.16	16.5	83.2	0.4	-4.29	0.75	0.73	—	4.2	0.004	0.81	0.0	0.04	13.63	0.01	2.083	13.13	0.00	10.7	89.1	0.1	-0.84	2.21	0.79	0.81	—	13079	1678	12	0	8	0	0	logfile
✘	7AML	11822	2022-05-16	2020-10-09	3.5	3.67	3.38	3.6	0.005	0.82	1.0	0.06	13.09	0.00	1.789	11.35	0.84	5.8	94.2	0.0	-3.64	0.67	0.58	0.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	31304	1996	10	0	24	0	15286	logfile

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