Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6oCE	20017	2023-02-20	2019-03-23	4.9	4.11	—	4.0	0.006	0.73	0.0	0.04	8.07	0.01	1.868	8.56	0.00	9.9	90.1	0.0	-4.37	0.45	0.60	—	4.0	0.003	0.72	0.0	0.04	12.78	0.01	2.268	10.55	0.00	12.4	87.6	0.0	-2.55	1.79	0.46	0.62	—	11228	1378	2	0	0	0	0	logfile
✔	6HRB	14918	2023-02-19	2018-09-26	4.0	3.61	3.93	3.9	0.008	0.96	0.0	0.05	9.28	0.01	2.186	6.75	0.26	7.2	92.8	0.0	-4.97	0.56	0.61	—	3.9	0.003	0.78	0.0	0.04	15.13	0.00	2.048	13.78	0.71	3.8	96.2	0.0	-0.26	1.47	0.64	0.74	—	10787	1447	5	0	1	0	0	logfile
✘	6SJE	10215	2023-02-24	2019-08-13	4.1	4.27	—	4.1	0.003	0.59	0.0	0.04	13.69	0.01	2.264	4.35	3.06	2.1	97.9	0.0	-3.60	0.82	0.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24115	2847	4	68	0	0	0	logfile
✘	6NQ2	0479	2023-02-19	2019-01-18	3.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10140	1242	4	0	2	0	0	logfile
✔	8E97	27958	2023-02-23	2022-08-26	4.19	3.55	4.21	3.4	0.007	1.05	6.0	0.07	13.37	0.01	1.822	12.49	1.35	13.4	85.9	0.7	-5.58	0.60	0.57	—	3.3	0.003	0.72	0.0	0.04	12.02	0.00	2.083	7.37	0.00	8.7	91.2	0.1	-1.50	0.66	0.70	0.79	—	20374	3074	10	0	15	0	0	logfile
✘	7W9T	32372	2023-02-21	2021-12-10	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14841	1709	8	0	39	0	0	logfile
✔	3J5R	5777	2023-02-22	2013-10-28	4.2	4.88	—	7.2	0.011	1.57	0.0	0.09	20.25	0.01	1.204	84.36	28.64	7.8	91.0	1.2	-0.91	0.58	0.45	—	7.3	0.004	0.91	0.0	0.04	13.17	0.00	2.141	20.76	0.00	6.8	92.9	0.4	0.29	1.77	0.67	0.53	—	17564	2324	4	0	44	0	0	logfile
✔	7KVC	23046	2023-02-24	2020-11-27	4.7	4.90	—	4.8	0.005	0.84	0.0	0.05	13.91	0.00	2.224	33.61	0.00	10.7	89.3	0.0	-2.46	0.82	0.81	—	4.8	0.004	0.76	0.0	0.04	14.05	0.01	2.222	24.53	0.00	5.6	94.4	0.0	-0.15	0.55	0.81	0.79	—	21920	2660	10	0	0	0	0	logfile
✘	6TU7	10590	2023-02-24	2020-01-03	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	logfile
✔	6V3G	21036	2023-02-26	2019-11-25	4.0	4.39	—	4.1	0.008	1.05	0.0	0.07	10.57	0.01	2.211	13.47	2.66	5.6	94.4	0.0	-2.76	0.72	0.77	—	4.1	0.003	0.77	0.0	0.04	12.72	0.00	2.157	14.36	0.19	3.5	96.5	0.0	-0.65	0.88	0.72	0.83	—	28520	3580	4	0	0	0	0	logfile
✔	6Q2J	20572	2023-02-21	2019-08-08	4.1	4.32	—	4.1	0.006	0.96	0.0	0.06	8.65	0.01	1.677	4.24	0.13	5.0	94.8	0.1	-3.22	0.52	0.28	—	4.2	0.005	0.90	0.0	0.05	11.83	0.01	2.089	16.74	0.00	7.3	92.7	0.1	-1.90	2.31	0.68	0.60	—	13796	1738	8	0	22	0	0	logfile
✔	6iRA	9714	2023-02-24	2018-11-12	4.5	5.18	—	5.1	0.009	1.42	13.0	0.07	8.45	0.01	1.413	20.24	0.12	10.0	89.1	0.9	-3.53	0.60	0.69	—	5.1	0.004	0.81	0.0	0.05	12.47	0.00	2.118	21.30	0.08	8.8	90.9	0.3	-1.42	2.19	0.61	0.73	—	23932	3080	4	0	0	0	0	logfile
✘	7BKD	12210	2023-02-25	2021-01-15	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24799	3177	18	0	26	0	0	logfile
✔	7ZoA	14845	2023-02-18	2022-04-24	4.0	4.31	4.04	4.2	0.004	0.82	1.0	0.07	13.97	0.00	2.176	9.69	0.11	3.3	96.4	0.4	0.93	0.64	0.75	—	4.2	0.003	0.71	0.0	0.04	17.04	0.00	2.122	11.67	0.53	4.2	95.5	0.3	1.41	0.82	0.69	0.80	—	9042	1140	3	0	18	0	0	logfile
✘	6oZC	20224	2023-02-25	2019-05-15	3.79	4.35	—	4.2	0.022	1.83	0.0	0.11	10.38	0.01	2.303	1.05	0.00	3.1	96.2	0.7	0.38	0.79	0.82	2.11	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25821	3027	54	0	186	0	0	logfile
✘	6NQ0	0477	2023-02-19	2019-01-18	3.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10140	1242	4	0	2	0	0	logfile
✘	7W9M	32370	2023-02-21	2021-12-10	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14219	1710	7	0	18	0	0	logfile
✔	6K4M	9915	2023-02-27	2019-05-24	4.5	7.82	—	7.8	0.006	1.01	0.0	0.05	17.74	0.00	2.258	13.35	0.54	1.8	98.2	0.0	-4.61	0.68	0.84	—	7.8	0.004	0.90	0.0	0.04	15.28	0.00	2.080	24.55	0.15	2.6	97.4	0.0	-0.40	1.59	0.70	0.86	—	31508	3790	48	0	36	0	0	logfile
✘	6o0Y	0584	2023-02-20	2019-02-17	3.37	4.01	—	3.7	0.005	0.74	0.0	0.05	16.71	0.01	2.272	2.52	0.37	5.5	94.5	0.0	-4.11	0.85	0.88	2.93	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11828	1146	5	150	0	0	0	logfile
✔	7S9D	24933	2023-02-19	2021-09-20	4.6	4.40	—	4.1	0.006	0.89	0.0	0.05	11.27	0.00	2.095	23.20	0.35	10.7	89.0	0.3	-0.95	0.61	0.80	—	4.1	0.002	0.64	0.0	0.04	11.89	0.00	2.233	10.40	0.00	7.4	92.3	0.3	-0.77	0.46	0.59	0.77	—	10462	1354	2	0	0	0	0	logfile

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