Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PTY	13643	2023-08-13	2021-09-27	4.63	5.10	—	4.5	0.003	0.68	0.0	0.04	13.76	0.00	2.199	25.20	0.00	10.9	89.1	0.0	-1.41	0.88	0.76	—	4.5	0.002	0.63	0.0	0.04	13.82	0.00	2.163	16.37	0.00	7.9	92.1	0.0	-0.80	0.39	0.89	0.77	—	13433	1715	2	0	0	0	0	logfile
✔	7SZ4	25560	2023-08-26	2021-11-25	4.8	7.97	4.67	3.9	0.003	0.79	0.0	0.05	14.41	0.01	2.097	25.58	0.02	18.8	80.5	0.7	-3.20	0.89	0.78	—	3.9	0.009	0.82	0.0	0.05	14.68	0.01	1.934	31.94	0.00	20.0	79.3	0.7	-3.11	0.49	0.88	0.76	—	48242	5973	12	0	0	0	0	logfile
✔	7KPW	22990	2023-08-09	2020-11-12	4.9	5.04	4.74	4.9	0.009	1.54	4.0	0.10	1.89	0.01	2.279	3.61	0.00	3.9	94.9	1.2	4.09	0.75	0.67	—	4.9	0.003	0.73	0.0	0.04	5.85	0.00	2.148	2.79	0.00	11.5	87.9	0.6	-0.50	2.04	0.82	0.82	—	4313	865	1	0	0	0	0	logfile
✔	7DTW	30856	2023-08-11	2021-01-06	4.5	4.74	—	3.6	0.008	1.01	0.0	0.06	13.74	0.01	2.267	9.20	0.00	10.3	89.7	0.0	-4.26	0.71	0.78	—	3.7	0.002	0.59	0.0	0.05	12.54	0.00	2.233	7.27	0.00	8.1	91.9	0.0	-1.09	0.58	0.71	0.79	—	10250	1556	8	0	14	0	0	logfile
✔	7V27	31638	2023-08-09	2021-08-07	4.18	4.43	—	4.2	0.002	0.54	0.0	0.04	11.66	0.00	2.229	9.54	0.00	9.2	90.8	0.0	-4.40	0.85	0.80	—	4.2	0.004	0.76	0.0	0.05	12.07	0.01	2.188	19.72	0.28	11.6	88.4	0.0	-2.83	0.81	0.86	0.82	—	3252	421	4	0	1	0	0	logfile
✘	7B05	11957	2023-08-16	2020-11-18	3.8	3.93	—	3.8	0.009	0.82	0.0	0.04	15.44	0.00	2.267	8.97	0.00	8.1	91.9	0.0	-0.12	0.81	0.85	2.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21056	2580	8	0	12	0	0	logfile
✘	6VDK	21151	2023-08-12	2019-12-27	4.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12309	1274	14	104	6	0	0	logfile
✔	7DTU	30854	2023-08-12	2021-01-06	4.4	4.54	—	3.7	0.006	0.90	0.0	0.06	14.57	0.01	2.277	6.85	0.00	9.4	90.6	0.0	-3.95	0.68	0.79	—	3.7	0.003	0.62	0.0	0.04	13.14	0.00	2.169	11.99	0.00	6.5	93.5	0.0	-0.70	1.10	0.68	0.80	—	10846	1558	8	0	14	0	0	logfile
✔	6BF8	7092	2023-08-14	2017-10-26	4.2	4.69	4.96	7.4	0.007	1.21	0.0	0.06	11.02	0.01	2.252	7.53	0.00	3.8	96.2	0.0	-4.13	0.80	0.71	—	4.0	0.006	0.94	0.0	0.05	12.91	0.01	2.020	39.14	0.00	10.8	89.2	0.0	-2.19	2.36	0.82	0.75	—	15412	1888	2	0	0	0	0	logfile
✔	8A64	15205	2023-08-10	2022-06-16	4.6	7.63	4.66	4.6	0.008	0.86	0.0	0.06	5.84	0.01	2.112	20.40	0.00	5.8	94.2	0.0	-1.55	0.91	0.78	—	4.6	0.003	0.69	0.0	0.04	4.67	0.00	2.031	18.34	0.00	9.2	90.8	0.0	-1.08	1.83	0.91	0.78	—	6737	1354	4	0	3	0	0	logfile
✘	7K10	22619	2023-08-11	2020-09-06	3.3	3.44	—	3.4	0.006	0.98	0.0	0.05	15.43	0.01	2.300	4.19	0.37	10.6	89.3	0.1	-5.28	0.72	0.77	2.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10037	1259	1	0	0	0	0	logfile
✘	7K5B	22679	2023-08-14	2020-09-16	4.5	4.62	—	3.9	0.018	1.93	50.0	0.10	12.72	0.01	0.384	37.45	2.43	4.6	94.6	0.8	-0.04	0.66	0.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	119573	15602	21	0	18	0	156	logfile
✘	6QEL	4537	2023-08-12	2019-01-08	3.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64816	4092	24	0	24	0	32302	logfile
✔	7UD5	26454	2023-08-17	2022-03-18	4.25	4.38	4.20	4.2	0.003	0.59	0.0	0.04	21.93	0.00	2.144	12.64	1.50	7.6	92.4	0.0	-2.04	0.72	0.60	—	4.2	0.004	0.66	0.0	0.04	22.23	0.00	2.133	18.09	0.06	9.0	91.0	0.0	-2.12	0.53	0.76	0.66	—	22713	2106	18	292	1	0	0	logfile
✔	7NXD	12637	2023-08-12	2021-03-18	4.6	8.22	6.02	6.0	0.013	1.51	0.0	0.11	9.25	0.03	1.831	64.77	1.03	4.0	96.0	0.1	-1.02	0.80	0.44	—	6.0	0.005	0.89	0.0	0.05	11.12	0.01	1.813	36.75	0.00	7.8	92.2	0.0	-1.51	1.55	0.90	0.73	—	12805	1595	18	0	48	0	0	logfile
✔	8HGH	34739	2023-08-18	2022-11-14	4.16	3.79	4.05	3.7	0.003	0.62	2.0	0.05	12.05	0.01	2.298	3.92	5.83	3.4	96.6	0.0	-1.78	0.76	0.69	—	3.7	0.003	0.64	0.0	0.04	12.54	0.00	2.120	11.31	0.00	3.5	96.5	0.0	-0.79	0.95	0.78	0.72	—	25512	3266	6	0	2	0	0	logfile
✔	6RQC	4980	2023-08-26	2019-05-15	4.4	4.57	4.38	4.4	0.012	1.28	1.0	0.07	18.21	0.01	1.965	9.13	0.54	10.4	89.5	0.1	-5.03	0.79	0.67	—	4.4	0.005	0.75	0.0	0.04	17.12	0.01	1.824	19.87	0.00	12.6	87.4	0.0	-2.74	3.23	0.80	0.70	—	105223	6174	23	176	15	0	51978	logfile
✔	7WG7	32479	2023-08-19	2021-12-28	4.0	4.39	—	4.2	0.005	0.88	0.0	0.06	14.25	0.01	2.237	6.84	0.07	7.8	92.2	0.0	-2.10	0.86	0.78	—	4.2	0.002	0.64	0.0	0.05	15.70	0.00	2.121	12.40	0.14	7.6	92.4	0.0	-1.24	1.13	0.87	0.78	—	27041	3313	25	0	73	0	0	logfile
✔	6S1N	10081	2023-08-16	2019-06-19	4.86	4.98	—	4.8	0.009	1.13	2.0	0.06	17.87	0.01	1.929	9.59	0.83	6.3	93.4	0.4	-3.47	0.73	0.53	—	4.8	0.003	0.76	0.0	0.04	16.36	0.00	2.138	16.34	0.00	4.6	95.3	0.0	-0.83	3.65	0.83	0.73	—	19726	2399	11	50	3	0	0	logfile
✔	7PXD	13698	2023-08-16	2021-10-08	4.0	2.58	—	2.8	0.006	0.93	0.0	0.05	14.08	0.01	2.068	8.55	3.29	4.0	95.9	0.1	-1.07	0.68	0.67	—	2.8	0.004	0.63	0.0	0.04	15.45	0.00	1.905	7.76	0.31	3.2	96.8	0.0	1.58	0.81	0.71	0.71	—	68900	9015	42	0	12	0	0	logfile

• ← previous
• Page 3 of 542
• next →