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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6oCE | 20017 | 2023-02-20 | 2019-03-23 | 4.9 | 4.11 | — | 4.0 | 0.006 | 0.73 | 0.0 | 0.04 | 8.07 | 0.01 | 1.868 | 8.56 | 0.00 | 9.9 | 90.1 | 0.0 | -4.37 | 0.45 | 0.60 | — | 4.0 | 0.003 | 0.72 | 0.0 | 0.04 | 12.78 | 0.01 | 2.268 | 10.55 | 0.00 | 12.4 | 87.6 | 0.0 | -2.55 | 1.79 | 0.46 | 0.62 | — | 11228 | 1378 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6HRB | 14918 | 2023-02-19 | 2018-09-26 | 4.0 | 3.61 | 3.93 | 3.9 | 0.008 | 0.96 | 0.0 | 0.05 | 9.28 | 0.01 | 2.186 | 6.75 | 0.26 | 7.2 | 92.8 | 0.0 | -4.97 | 0.56 | 0.61 | — | 3.9 | 0.003 | 0.78 | 0.0 | 0.04 | 15.13 | 0.00 | 2.048 | 13.78 | 0.71 | 3.8 | 96.2 | 0.0 | -0.26 | 1.47 | 0.64 | 0.74 | — | 10787 | 1447 | 5 | 0 | 1 | 0 | 0 | logfile |
✘ | 6SJE | 10215 | 2023-02-24 | 2019-08-13 | 4.1 | 4.27 | — | 4.1 | 0.003 | 0.59 | 0.0 | 0.04 | 13.69 | 0.01 | 2.264 | 4.35 | 3.06 | 2.1 | 97.9 | 0.0 | -3.60 | 0.82 | 0.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24115 | 2847 | 4 | 68 | 0 | 0 | 0 | logfile |
✘ | 6NQ2 | 0479 | 2023-02-19 | 2019-01-18 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10140 | 1242 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 8E97 | 27958 | 2023-02-23 | 2022-08-26 | 4.19 | 3.55 | 4.21 | 3.4 | 0.007 | 1.05 | 6.0 | 0.07 | 13.37 | 0.01 | 1.822 | 12.49 | 1.35 | 13.4 | 85.9 | 0.7 | -5.58 | 0.60 | 0.57 | — | 3.3 | 0.003 | 0.72 | 0.0 | 0.04 | 12.02 | 0.00 | 2.083 | 7.37 | 0.00 | 8.7 | 91.2 | 0.1 | -1.50 | 0.66 | 0.70 | 0.79 | — | 20374 | 3074 | 10 | 0 | 15 | 0 | 0 | logfile |
✘ | 7W9T | 32372 | 2023-02-21 | 2021-12-10 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14841 | 1709 | 8 | 0 | 39 | 0 | 0 | logfile |
✔ | 3J5R | 5777 | 2023-02-22 | 2013-10-28 | 4.2 | 4.88 | — | 7.2 | 0.011 | 1.57 | 0.0 | 0.09 | 20.25 | 0.01 | 1.204 | 84.36 | 28.64 | 7.8 | 91.0 | 1.2 | -0.91 | 0.58 | 0.45 | — | 7.3 | 0.004 | 0.91 | 0.0 | 0.04 | 13.17 | 0.00 | 2.141 | 20.76 | 0.00 | 6.8 | 92.9 | 0.4 | 0.29 | 1.77 | 0.67 | 0.53 | — | 17564 | 2324 | 4 | 0 | 44 | 0 | 0 | logfile |
✔ | 7KVC | 23046 | 2023-02-24 | 2020-11-27 | 4.7 | 4.90 | — | 4.8 | 0.005 | 0.84 | 0.0 | 0.05 | 13.91 | 0.00 | 2.224 | 33.61 | 0.00 | 10.7 | 89.3 | 0.0 | -2.46 | 0.82 | 0.81 | — | 4.8 | 0.004 | 0.76 | 0.0 | 0.04 | 14.05 | 0.01 | 2.222 | 24.53 | 0.00 | 5.6 | 94.4 | 0.0 | -0.15 | 0.55 | 0.81 | 0.79 | — | 21920 | 2660 | 10 | 0 | 0 | 0 | 0 | logfile |
✘ | 6TU7 | 10590 | 2023-02-24 | 2020-01-03 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✔ | 6V3G | 21036 | 2023-02-26 | 2019-11-25 | 4.0 | 4.39 | — | 4.1 | 0.008 | 1.05 | 0.0 | 0.07 | 10.57 | 0.01 | 2.211 | 13.47 | 2.66 | 5.6 | 94.4 | 0.0 | -2.76 | 0.72 | 0.77 | — | 4.1 | 0.003 | 0.77 | 0.0 | 0.04 | 12.72 | 0.00 | 2.157 | 14.36 | 0.19 | 3.5 | 96.5 | 0.0 | -0.65 | 0.88 | 0.72 | 0.83 | — | 28520 | 3580 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Q2J | 20572 | 2023-02-21 | 2019-08-08 | 4.1 | 4.32 | — | 4.1 | 0.006 | 0.96 | 0.0 | 0.06 | 8.65 | 0.01 | 1.677 | 4.24 | 0.13 | 5.0 | 94.8 | 0.1 | -3.22 | 0.52 | 0.28 | — | 4.2 | 0.005 | 0.90 | 0.0 | 0.05 | 11.83 | 0.01 | 2.089 | 16.74 | 0.00 | 7.3 | 92.7 | 0.1 | -1.90 | 2.31 | 0.68 | 0.60 | — | 13796 | 1738 | 8 | 0 | 22 | 0 | 0 | logfile |
✔ | 6iRA | 9714 | 2023-02-24 | 2018-11-12 | 4.5 | 5.18 | — | 5.1 | 0.009 | 1.42 | 13.0 | 0.07 | 8.45 | 0.01 | 1.413 | 20.24 | 0.12 | 10.0 | 89.1 | 0.9 | -3.53 | 0.60 | 0.69 | — | 5.1 | 0.004 | 0.81 | 0.0 | 0.05 | 12.47 | 0.00 | 2.118 | 21.30 | 0.08 | 8.8 | 90.9 | 0.3 | -1.42 | 2.19 | 0.61 | 0.73 | — | 23932 | 3080 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 7BKD | 12210 | 2023-02-25 | 2021-01-15 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24799 | 3177 | 18 | 0 | 26 | 0 | 0 | logfile |
✔ | 7ZoA | 14845 | 2023-02-18 | 2022-04-24 | 4.0 | 4.31 | 4.04 | 4.2 | 0.004 | 0.82 | 1.0 | 0.07 | 13.97 | 0.00 | 2.176 | 9.69 | 0.11 | 3.3 | 96.4 | 0.4 | 0.93 | 0.64 | 0.75 | — | 4.2 | 0.003 | 0.71 | 0.0 | 0.04 | 17.04 | 0.00 | 2.122 | 11.67 | 0.53 | 4.2 | 95.5 | 0.3 | 1.41 | 0.82 | 0.69 | 0.80 | — | 9042 | 1140 | 3 | 0 | 18 | 0 | 0 | logfile |
✘ | 6oZC | 20224 | 2023-02-25 | 2019-05-15 | 3.79 | 4.35 | — | 4.2 | 0.022 | 1.83 | 0.0 | 0.11 | 10.38 | 0.01 | 2.303 | 1.05 | 0.00 | 3.1 | 96.2 | 0.7 | 0.38 | 0.79 | 0.82 | 2.11 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25821 | 3027 | 54 | 0 | 186 | 0 | 0 | logfile |
✘ | 6NQ0 | 0477 | 2023-02-19 | 2019-01-18 | 3.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10140 | 1242 | 4 | 0 | 2 | 0 | 0 | logfile |
✘ | 7W9M | 32370 | 2023-02-21 | 2021-12-10 | 3.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14219 | 1710 | 7 | 0 | 18 | 0 | 0 | logfile |
✔ | 6K4M | 9915 | 2023-02-27 | 2019-05-24 | 4.5 | 7.82 | — | 7.8 | 0.006 | 1.01 | 0.0 | 0.05 | 17.74 | 0.00 | 2.258 | 13.35 | 0.54 | 1.8 | 98.2 | 0.0 | -4.61 | 0.68 | 0.84 | — | 7.8 | 0.004 | 0.90 | 0.0 | 0.04 | 15.28 | 0.00 | 2.080 | 24.55 | 0.15 | 2.6 | 97.4 | 0.0 | -0.40 | 1.59 | 0.70 | 0.86 | — | 31508 | 3790 | 48 | 0 | 36 | 0 | 0 | logfile |
✘ | 6o0Y | 0584 | 2023-02-20 | 2019-02-17 | 3.37 | 4.01 | — | 3.7 | 0.005 | 0.74 | 0.0 | 0.05 | 16.71 | 0.01 | 2.272 | 2.52 | 0.37 | 5.5 | 94.5 | 0.0 | -4.11 | 0.85 | 0.88 | 2.93 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11828 | 1146 | 5 | 150 | 0 | 0 | 0 | logfile |
✔ | 7S9D | 24933 | 2023-02-19 | 2021-09-20 | 4.6 | 4.40 | — | 4.1 | 0.006 | 0.89 | 0.0 | 0.05 | 11.27 | 0.00 | 2.095 | 23.20 | 0.35 | 10.7 | 89.0 | 0.3 | -0.95 | 0.61 | 0.80 | — | 4.1 | 0.002 | 0.64 | 0.0 | 0.04 | 11.89 | 0.00 | 2.233 | 10.40 | 0.00 | 7.4 | 92.3 | 0.3 | -0.77 | 0.46 | 0.59 | 0.77 | — | 10462 | 1354 | 2 | 0 | 0 | 0 | 0 | logfile |