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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8EYX | 28723 | 2024-03-18 | 2022-10-29 | 4.5 | 4.99 | 4.61 | 4.1 | 0.006 | 0.76 | 1.0 | 0.05 | 12.87 | 0.00 | 1.857 | 33.88 | 1.18 | 9.7 | 89.7 | 0.6 | -1.73 | 0.86 | 0.74 | — | 4.1 | 0.002 | 0.61 | 0.0 | 0.04 | 12.76 | 0.00 | 2.159 | 14.82 | 0.12 | 6.6 | 93.1 | 0.2 | -1.11 | 1.17 | 0.89 | 0.82 | — | 14298 | 1773 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PF6 | 13369 | 2024-03-16 | 2021-08-11 | 4.0 | 4.89 | — | 3.7 | 0.006 | 0.99 | 0.0 | 0.06 | 29.58 | 0.01 | 2.268 | 7.80 | 0.00 | 1.9 | 98.1 | 0.0 | -0.75 | 0.87 | 0.76 | — | 3.7 | 0.004 | 0.77 | 0.0 | 0.06 | 29.75 | 0.00 | 2.032 | 22.11 | 1.73 | 2.7 | 97.3 | 0.0 | 0.65 | 1.65 | 0.87 | 0.77 | — | 13470 | 843 | 11 | 334 | 0 | 0 | 0 | logfile |
✔ | 5LMo | 4074 | 2024-03-10 | 2016-08-01 | 4.3 | 4.71 | 4.30 | 4.3 | 0.009 | 1.47 | 50.0 | 0.12 | 26.49 | 0.01 | 0.865 | 18.49 | 20.40 | 10.6 | 85.8 | 3.6 | -2.76 | 0.80 | 0.69 | — | 4.3 | 0.004 | 0.72 | 0.0 | 0.04 | 23.97 | 0.01 | 1.038 | 31.29 | 0.00 | 8.9 | 90.5 | 0.5 | -1.73 | 2.17 | 0.88 | 0.84 | — | 54110 | 2622 | 29 | 1533 | 110 | 0 | 0 | logfile |
✔ | 6ZNM | 11317 | 2024-03-17 | 2020-07-06 | 4.1 | 4.41 | 3.90 | 4.1 | 0.013 | 1.75 | 0.0 | 0.09 | 13.50 | 0.00 | 1.790 | 1.80 | 0.00 | 7.2 | 92.6 | 0.1 | -2.56 | 0.77 | 0.75 | — | 4.0 | 0.002 | 0.65 | 0.0 | 0.04 | 13.16 | 0.00 | 2.190 | 9.46 | 0.00 | 3.8 | 96.1 | 0.1 | 0.21 | 1.58 | 0.81 | 0.84 | — | 19253 | 2470 | 15 | 0 | 138 | 0 | 0 | logfile |
✔ | 6JXC | 9893 | 2024-03-16 | 2019-04-23 | 4.1 | 4.20 | — | 4.1 | 0.018 | 1.71 | 0.0 | 0.09 | 8.99 | 0.01 | 2.221 | 4.77 | 0.38 | 9.3 | 87.7 | 3.0 | -1.28 | 0.50 | 0.61 | — | 4.1 | 0.003 | 0.80 | 0.0 | 0.04 | 12.11 | 0.00 | 2.106 | 10.45 | 0.00 | 11.6 | 86.4 | 2.0 | 0.22 | 0.97 | 0.55 | 0.69 | — | 15270 | 2345 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SH4 | 10193 | 2024-03-15 | 2019-08-05 | 4.4 | 4.48 | — | 4.3 | 0.005 | 1.01 | 0.0 | 0.07 | 5.13 | 0.00 | 2.405 | 2.99 | 0.00 | 6.8 | 92.4 | 0.8 | -2.94 | 0.72 | 0.77 | — | 4.3 | 0.003 | 0.69 | 0.0 | 0.04 | 4.47 | 0.00 | 2.243 | 1.49 | 0.00 | 7.0 | 92.8 | 0.2 | 0.09 | 2.27 | 0.74 | 0.83 | — | 12957 | 2632 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 5LMT | 4079 | 2024-03-11 | 2016-08-01 | 4.15 | 4.33 | 4.20 | 4.2 | 0.008 | 1.43 | 21.0 | 0.12 | 26.59 | 0.02 | 1.290 | 18.78 | 22.35 | 11.9 | 84.8 | 3.3 | -2.73 | 0.77 | 0.76 | — | 4.1 | 0.005 | 0.77 | 0.0 | 0.04 | 24.06 | 0.01 | 1.817 | 28.66 | 0.00 | 8.8 | 90.9 | 0.3 | -1.49 | 1.60 | 0.80 | 0.83 | — | 55776 | 2622 | 31 | 1612 | 88 | 0 | 0 | logfile |
✘ | 7CH8 | 30371 | 2024-03-17 | 2020-07-05 | 3.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16213 | 2122 | 17 | 0 | 12 | 0 | 0 | logfile |
✔ | 5N6W | 3595 | 2024-03-24 | 2017-02-16 | 4.2 | 4.31 | — | 4.2 | 0.001 | 0.36 | 0.0 | 0.04 | 4.92 | 0.00 | 2.309 | 3.73 | 0.00 | 17.7 | 79.7 | 2.6 | -5.61 | 0.44 | 0.27 | — | 4.2 | 0.004 | 0.77 | 0.0 | 0.04 | 11.33 | 0.01 | 1.844 | 23.01 | 0.00 | 16.5 | 82.9 | 0.6 | -3.97 | 1.95 | 0.72 | 0.73 | — | 40752 | 2512 | 16 | 0 | 0 | 0 | 20032 | logfile |
✔ | 6N51 | 0345 | 2024-03-16 | 2018-11-20 | 4.0 | 4.15 | — | 4.0 | 0.006 | 0.84 | 0.0 | 0.05 | 9.68 | 0.01 | 2.274 | 5.73 | 0.00 | 6.8 | 93.2 | 0.0 | -3.65 | 0.71 | 0.81 | — | 4.0 | 0.003 | 0.73 | 0.0 | 0.04 | 13.98 | 0.00 | 2.119 | 14.34 | 3.04 | 5.3 | 94.7 | 0.0 | -0.68 | 1.42 | 0.72 | 0.82 | — | 14087 | 1830 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 6RN3 | 4941 | 2024-03-22 | 2019-05-07 | 4.0 | 4.11 | 4.09 | 4.0 | 0.010 | 1.15 | 0.0 | 0.06 | 11.26 | 0.01 | 2.198 | 7.53 | 0.35 | 8.0 | 92.0 | 0.0 | -3.79 | 0.69 | 0.73 | — | 4.0 | 0.010 | 0.73 | 1.0 | 0.04 | 16.09 | 0.00 | 2.105 | 14.38 | 2.97 | 5.7 | 94.3 | 0.0 | 0.01 | 1.64 | 0.73 | 0.80 | — | 32871 | 4105 | 13 | 0 | 35 | 0 | 0 | logfile |
✔ | 5oNV | 3835 | 2024-03-16 | 2017-08-04 | 4.1 | 4.21 | 3.90 | 4.1 | 0.013 | 1.56 | 0.0 | 0.07 | 11.90 | 0.02 | 1.996 | 2.82 | 0.00 | 6.3 | 90.2 | 3.6 | -2.61 | 0.68 | 0.83 | — | 4.1 | 0.003 | 0.75 | 0.0 | 0.04 | 13.50 | 0.00 | 1.986 | 12.18 | 0.00 | 4.9 | 94.8 | 0.3 | 0.00 | 1.53 | 0.68 | 0.84 | — | 14640 | 1855 | 10 | 0 | 10 | 0 | 0 | logfile |
✔ | 7PFF | 13374 | 2024-03-16 | 2021-08-11 | 4.3 | 7.61 | — | 3.8 | 0.006 | 0.92 | 0.0 | 0.05 | 30.35 | 0.01 | 2.286 | 8.26 | 0.00 | 1.6 | 98.4 | 0.0 | -0.07 | 0.90 | 0.79 | — | 3.7 | 0.005 | 0.72 | 0.0 | 0.04 | 30.99 | 0.00 | 2.198 | 27.46 | 0.00 | 3.7 | 96.3 | 0.0 | 0.66 | 1.83 | 0.89 | 0.81 | — | 12935 | 768 | 10 | 334 | 0 | 0 | 0 | logfile |
✔ | 8EYY | 28724 | 2024-03-18 | 2022-10-29 | 4.9 | 6.21 | 5.32 | 4.3 | 0.003 | 0.58 | 0.0 | 0.04 | 12.98 | 0.00 | 2.165 | 21.05 | 0.06 | 7.2 | 92.6 | 0.2 | -1.16 | 0.89 | 0.81 | — | 4.3 | 0.002 | 0.56 | 0.0 | 0.04 | 13.13 | 0.00 | 2.206 | 18.99 | 0.00 | 6.9 | 93.1 | 0.1 | -0.88 | 1.12 | 0.90 | 0.84 | — | 14301 | 1773 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WB2 | 21585 | 2024-03-11 | 2020-03-26 | 4.5 | 4.71 | — | 4.5 | 0.002 | 0.44 | 0.0 | 0.04 | 16.51 | 0.00 | 2.293 | 7.78 | 0.17 | 3.1 | 96.9 | 0.0 | -3.59 | 0.86 | 0.80 | — | 4.5 | 0.002 | 0.56 | 0.0 | 0.04 | 16.64 | 0.00 | 2.171 | 10.01 | 0.00 | 3.1 | 96.9 | 0.0 | -0.27 | 0.62 | 0.87 | 0.82 | — | 8407 | 946 | 4 | 75 | 0 | 0 | 0 | logfile |
✘ | 7BL2 | 12215 | 2024-03-19 | 2021-01-18 | 3.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✔ | 8G09 | 29650 | 2024-03-18 | 2023-01-31 | 3.1 | 3.88 | 3.23 | 3.2 | 0.005 | 0.71 | 0.0 | 0.23 | 7.95 | 0.00 | 1.766 | 0.75 | 0.00 | 3.1 | 96.9 | 0.0 | 0.54 | 0.74 | 0.70 | — | 3.4 | 0.008 | 0.98 | 0.0 | 0.06 | 7.89 | 0.01 | 1.657 | 7.92 | 0.00 | 12.9 | 87.1 | 0.0 | -1.17 | 0.74 | 0.82 | 0.82 | — | 19599 | 4860 | 26 | 0 | 10 | 0 | 0 | logfile |
✘ | 7T92 | 25750 | 2024-03-18 | 2021-12-17 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18777 | 1159 | 8 | 0 | 25 | 0 | 9156 | logfile |
✔ | 7YCG | 33738 | 2024-03-11 | 2022-07-01 | 3.18 | 4.71 | 3.37 | 3.5 | 0.002 | 0.50 | 0.0 | 0.03 | 24.46 | 0.00 | 1.893 | 15.83 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.94 | 0.84 | — | 3.5 | 0.007 | 0.66 | 0.0 | 0.03 | 24.51 | 0.00 | 1.855 | 32.20 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.31 | 0.95 | 0.89 | — | 8661 | 0 | 2 | 404 | 4 | 0 | 0 | logfile |
✘ | 6XEV | 22154 | 2024-03-15 | 2020-06-14 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10545 | 1312 | 8 | 0 | 25 | 0 | 0 | logfile |