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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 5Z96 | 6901 | 2024-03-18 | 2018-02-02 | 3.28 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21494 | 2665 | 8 | 0 | 13 | 0 | 0 | logfile |
✘ | 6oMB | 20124 | 2024-03-18 | 2019-04-18 | 3.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21815 | 2775 | 11 | 0 | 48 | 0 | 0 | logfile |
✘ | 7R5M | 14331 | 2024-03-15 | 2022-02-11 | 3.3 | 3.09 | 3.20 | 3.2 | 0.006 | 0.94 | 0.0 | 0.06 | 14.64 | 0.00 | 2.411 | 1.26 | 0.80 | 4.6 | 95.4 | 0.0 | -0.79 | 0.70 | 0.80 | 2.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11295 | 1491 | 9 | 0 | 0 | 0 | 0 | logfile |
✘ | 7EDA | 31062 | 2024-03-19 | 2021-03-15 | 2.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22843 | 2567 | 32 | 0 | 67 | 16 | 0 | logfile |
✘ | 6KLS | 0716 | 2024-03-15 | 2019-07-30 | 3.3 | 3.40 | 3.21 | 3.4 | 0.014 | 1.22 | 2.0 | 0.05 | 18.65 | 0.03 | 1.992 | 14.52 | 0.69 | 10.7 | 89.2 | 0.1 | -3.67 | 0.66 | 0.77 | 2.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13011 | 1530 | 12 | 0 | 17 | 0 | 0 | logfile |
✘ | 7U6V | 26381 | 2024-03-16 | 2022-03-06 | 4.1 | 3.17 | 4.21 | 6.8 | 0.002 | 0.52 | 0.0 | 0.04 | 13.79 | 0.00 | 1.948 | 13.74 | 1.57 | 4.7 | 95.3 | 0.0 | -0.16 | 0.64 | 0.29 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9997 | 637 | 14 | 0 | 0 | 23 | 4901 | logfile |
✘ | 6PM5 | 20388 | 2024-03-16 | 2019-07-01 | 3.1 | 3.38 | — | 3.4 | 0.002 | 0.49 | 0.0 | 0.06 | 11.10 | 0.00 | 2.275 | 4.99 | 0.00 | 2.4 | 97.6 | 0.0 | -4.42 | 0.52 | 0.78 | 3.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13975 | 1735 | 15 | 0 | 15 | 0 | 0 | logfile |
✘ | 6V8X | 21111 | 2024-03-19 | 2019-12-12 | 3.0 | 3.33 | — | 3.2 | 0.017 | 1.48 | 9.0 | 0.08 | 15.17 | 0.01 | 2.180 | 4.31 | 0.23 | 8.5 | 90.6 | 0.9 | -3.90 | 0.82 | 0.77 | 2.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24825 | 2997 | 54 | 0 | 105 | 0 | 0 | logfile |
✘ | 7XL4 | 33272 | 2024-03-19 | 2022-04-21 | 3.86 | 3.92 | — | 3.8 | 0.001 | 0.36 | 0.0 | 0.04 | 9.42 | 0.00 | 2.274 | 4.13 | 0.00 | 1.4 | 98.6 | 0.0 | -4.82 | 0.78 | 0.75 | 1.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24560 | 3479 | 8 | 0 | 3 | 0 | 0 | logfile |
✘ | 7RMC | 24560 | 2024-03-28 | 2021-07-27 | 3.5 | 3.50 | — | 3.6 | 0.013 | 2.05 | 44.0 | 0.15 | 17.28 | 0.02 | 2.304 | 1.80 | 1.65 | 4.6 | 95.1 | 0.4 | -1.78 | 0.26 | 0.38 | 2.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 106824 | 6732 | 24 | 0 | 24 | 0 | 53244 | logfile |
✘ | 3JCU | 6617 | 2024-03-16 | 2016-03-10 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 75994 | 7648 | 76 | 0 | 322 | 0 | 0 | logfile |
✘ | 6QD8 | 4521 | 2024-03-16 | 2019-01-01 | 3.3 | 3.57 | 3.46 | 3.5 | 0.015 | 1.67 | 0.0 | 0.08 | 16.53 | 0.01 | 2.220 | 5.68 | 3.96 | 6.7 | 92.8 | 0.5 | -2.00 | 0.62 | 0.70 | 1.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14154 | 1785 | 18 | 0 | 39 | 0 | 0 | logfile |
✘ | 5NiK | 3652 | 2024-03-23 | 2017-03-24 | 3.3 | 3.47 | — | 3.4 | 0.010 | 1.29 | 0.0 | 0.04 | 10.30 | 0.01 | 0.941 | 22.00 | 0.24 | 6.4 | 91.6 | 1.9 | -1.88 | 0.64 | 0.59 | 1.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35215 | 4582 | 11 | 0 | 0 | 0 | 0 | logfile |
✘ | 6i52 | 4410 | 2024-03-10 | 2018-11-12 | 4.7 | 4.78 | — | 8.9 | 0.002 | 0.57 | 0.0 | 0.04 | 16.56 | 0.00 | 2.303 | 10.11 | 5.70 | 11.6 | 87.5 | 0.9 | -4.07 | 0.73 | 0.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3856 | 432 | 4 | 20 | 0 | 0 | 0 | logfile |
✘ | 6ZY9 | 11555 | 2024-03-16 | 2020-07-30 | 3.3 | 3.42 | — | 3.5 | 0.004 | 0.81 | 0.0 | 0.05 | 13.73 | 0.01 | 2.174 | 2.45 | 0.25 | 4.7 | 95.3 | 0.0 | -5.76 | 0.62 | 0.71 | 1.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14973 | 1985 | 14 | 0 | 4 | 0 | 0 | logfile |
✘ | 8HWB | 35052 | 2024-03-20 | 2022-12-29 | 3.9 | 4.06 | 3.80 | 3.9 | 0.003 | 0.63 | 0.0 | 0.04 | 16.50 | 0.00 | 1.900 | 9.80 | 0.59 | 3.7 | 96.2 | 0.0 | -1.13 | 0.80 | 0.84 | 1.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25740 | 3147 | 13 | 6 | 10 | 0 | 0 | logfile |
✘ | 7XL3 | 33271 | 2024-03-20 | 2022-04-21 | 3.13 | 3.20 | — | 3.2 | 0.002 | 0.39 | 0.0 | 0.04 | 12.03 | 0.00 | 2.263 | 4.77 | 1.08 | 2.9 | 97.1 | 0.0 | -4.73 | 0.73 | 0.79 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25700 | 3480 | 8 | 0 | 3 | 0 | 0 | logfile |
✘ | 6Z5R | 11080 | 2024-03-19 | 2020-05-27 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25048 | 2336 | 72 | 0 | 105 | 3 | 0 | logfile |
✘ | 6Y5A | 10692 | 2024-03-22 | 2020-02-25 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32403 | 1940 | 10 | 0 | 5 | 0 | 16272 | logfile |
✘ | 6SCT | 0126 | 2024-03-24 | 2019-07-25 | 4.69 | 4.38 | 4.14 | 4.0 | 0.004 | 0.75 | 3.0 | 0.04 | 15.13 | 0.00 | 2.104 | 6.11 | 0.27 | 7.5 | 92.4 | 0.1 | -3.74 | 0.81 | 0.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40680 | 4947 | 15 | 0 | 0 | 0 | 0 | logfile |