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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 5WE6 | 8815 | 2022-07-11 | 2017-07-07 | 3.4 | 3.36 | 3.38 | 3.3 | 0.007 | 1.09 | 2.0 | 0.10 | 16.96 | 0.01 | 1.180 | 1.98 | 2.48 | 10.3 | 87.3 | 2.4 | -4.31 | 0.77 | 0.80 | 2.33 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 153233 | 6322 | 97 | 4801 | 671 | 153 | 0 | logfile |
✘ | 6PP7 | 20421 | 2022-07-06 | 2019-07-05 | 4.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32499 | 2081 | 13 | 0 | 25 | 0 | 16296 | logfile |
✘ | 6RHZ | 4883 | 2022-07-06 | 2019-04-23 | 3.2 | 3.48 | 3.18 | 3.4 | 0.008 | 1.15 | 0.0 | 0.10 | 19.68 | 0.02 | 1.172 | 4.66 | 0.00 | 3.7 | 96.2 | 0.1 | -3.89 | 0.70 | 0.76 | 1.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 53055 | 2783 | 20 | 0 | 193 | 0 | 21167 | logfile |
✘ | 6KMW | 0726 | 2022-07-03 | 2019-08-01 | 2.35 | 2.41 | — | 2.4 | 0.026 | 2.51 | 0.0 | 0.08 | 20.93 | 0.03 | 1.212 | 6.39 | 3.70 | 4.3 | 95.6 | 0.1 | -4.06 | 0.77 | 0.85 | 4.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64083 | 5739 | 63 | 0 | 366 | 627 | 0 | logfile |
✘ | 5MDZ | 3493 | 2022-07-08 | 2016-11-13 | 3.1 | 3.20 | 3.10 | 3.2 | 0.010 | 1.23 | 21.0 | 0.10 | 16.40 | 0.01 | 1.206 | 2.84 | 6.88 | 4.7 | 94.9 | 0.4 | -1.93 | 0.79 | 0.88 | 2.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 146639 | 5973 | 66 | 4638 | 439 | 2 | 0 | logfile |
✘ | 6QCM | 4508 | 2022-07-02 | 2018-12-28 | 4.21 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 5MDW | 3490 | 2022-07-09 | 2016-11-13 | 3.06 | 3.16 | 3.07 | 3.1 | 0.008 | 1.30 | 26.0 | 0.11 | 16.49 | 0.01 | 1.176 | 3.59 | 7.69 | 5.6 | 93.9 | 0.5 | -1.97 | 0.81 | 0.89 | 2.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 149607 | 6346 | 67 | 4638 | 440 | 2 | 0 | logfile |
✘ | 5T62 | 8362 | 2022-07-06 | 2016-09-01 | 3.3 | 3.38 | — | 3.4 | 0.007 | 1.14 | 5.0 | 0.09 | 17.38 | 0.01 | 1.390 | 1.95 | 6.32 | 8.1 | 89.7 | 2.2 | -4.03 | 0.68 | 0.78 | 3.21 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 131766 | 7061 | 57 | 3483 | 438 | 6 | 0 | logfile |
✘ | 5MDV | 3489 | 2022-07-09 | 2016-11-13 | 2.97 | 3.05 | 2.97 | 3.0 | 0.007 | 1.24 | 22.0 | 0.10 | 16.52 | 0.01 | 1.216 | 3.29 | 7.74 | 4.9 | 94.7 | 0.4 | -1.77 | 0.79 | 0.88 | 3.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 149892 | 6382 | 67 | 4638 | 442 | 2 | 0 | logfile |
✘ | 5XTE | 6774 | 2022-07-06 | 2017-06-19 | 3.4 | 3.53 | — | 3.4 | 0.008 | 1.27 | 2.0 | 0.05 | 12.91 | 0.01 | 1.396 | 20.98 | 1.49 | 5.0 | 93.6 | 1.4 | -0.90 | 0.77 | 0.79 | 2.93 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34492 | 4222 | 35 | 0 | 26 | 0 | 0 | logfile |
✘ | 2XEA | 1730 | 2022-07-03 | 2010-05-12 | 4.6 | 4.10 | — | 4.2 | 0.012 | 2.12 | 0.0 | 0.12 | 20.46 | 0.02 | 1.226 | 162.14 | 3.68 | 8.6 | 90.1 | 1.3 | -3.51 | 0.39 | 0.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62671 | 7546 | 98 | 147 | 0 | 0 | 0 | logfile |
✘ | 6Q98 | 4477 | 2022-07-11 | 2018-12-17 | 4.3 | 4.44 | — | 4.4 | 0.008 | 1.20 | 0.0 | 0.12 | 19.04 | 0.01 | 1.164 | 10.07 | 0.48 | 12.0 | 87.9 | 0.0 | -4.86 | 0.83 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 153878 | 6132 | 71 | 4920 | 431 | 2 | 0 | logfile |
✘ | 6N9X | 0382 | 2022-07-04 | 2018-12-04 | 4.1 | 4.18 | — | 4.1 | 0.005 | 0.84 | 0.0 | 0.05 | 13.69 | 0.02 | 1.250 | 3.73 | 0.60 | 3.9 | 96.1 | 0.0 | -4.04 | 0.74 | 0.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19658 | 2419 | 14 | 31 | 12 | 0 | 0 | logfile |
✘ | 5iQR | 8107 | 2022-07-11 | 2016-03-11 | 3.0 | 3.10 | 3.03 | 3.1 | 0.007 | 1.22 | 41.0 | 0.11 | 17.08 | 0.01 | 0.899 | 7.55 | 6.07 | 7.5 | 91.0 | 1.5 | -2.52 | 0.76 | 0.81 | 1.93 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 154519 | 6570 | 74 | 4794 | 303 | 2 | 0 | logfile |
✘ | 5NUG | 3698 | 2022-07-07 | 2017-04-30 | 3.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -0.41 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 46232 | 5840 | 4 | 0 | 10 | 0 | 0 | logfile |
✘ | 6NT6 | 0503 | 2022-07-03 | 2019-01-28 | 4.0 | 4.22 | — | 4.1 | 0.005 | 0.79 | 0.0 | 0.04 | 11.99 | 0.01 | 2.316 | 3.70 | 0.00 | 3.8 | 96.2 | 0.0 | -3.32 | 0.69 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4198 | 556 | 2 | 0 | 0 | 0 | 0 | logfile |
✘ | 6PBF | 20292 | 2022-07-04 | 2019-06-13 | 4.2 | 4.50 | — | 4.5 | 0.005 | 0.91 | 0.0 | 0.05 | 15.51 | 0.01 | 1.242 | 5.10 | 0.22 | 6.8 | 93.2 | 0.0 | -4.37 | 0.54 | 0.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18484 | 2392 | 7 | 0 | 4 | 0 | 0 | logfile |
✘ | 6MHU | 9118 | 2022-07-03 | 2018-09-18 | 4.0 | 3.93 | — | 3.9 | 0.007 | 1.12 | 0.0 | 0.06 | 11.19 | 0.01 | 1.222 | 6.82 | 0.76 | 10.9 | 89.1 | 0.0 | -4.84 | 0.53 | 0.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8810 | 1112 | 5 | 0 | 1 | 0 | 0 | logfile |
✘ | 6JEo | 9807 | 2022-07-06 | 2019-02-06 | 3.3 | 3.44 | — | 3.4 | 0.009 | 1.14 | 0.0 | 0.06 | 18.11 | 0.02 | 1.212 | 7.53 | 0.24 | 4.8 | 95.2 | 0.0 | -5.26 | 0.73 | 0.81 | 4.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 94576 | 8774 | 88 | 0 | 504 | 0 | 0 | logfile |
✘ | 6NT7 | 0504 | 2022-07-03 | 2019-01-28 | 4.0 | 4.27 | — | 4.1 | 0.007 | 0.87 | 0.0 | 0.04 | 13.41 | 0.01 | 1.197 | 5.64 | 0.00 | 6.2 | 93.8 | 0.0 | -3.29 | 0.75 | 0.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4729 | 588 | 3 | 0 | 1 | 0 | 0 | logfile |