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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6KAC | 9955 | 2022-07-05 | 2019-06-21 | 2.7 | 2.84 | — | 2.8 | 0.011 | 1.46 | 0.0 | 0.06 | 14.99 | 0.02 | 1.198 | 8.43 | 0.64 | 4.9 | 95.0 | 0.1 | -4.64 | 0.72 | 0.84 | 4.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 77947 | 7858 | 126 | 0 | 318 | 595 | 0 | logfile |
✘ | 5H4P | 9569 | 2022-07-05 | 2016-11-01 | 3.07 | 3.58 | — | 3.5 | 0.008 | 0.86 | 0.0 | 0.05 | 15.30 | 0.01 | 1.709 | 13.85 | 0.15 | 6.2 | 92.9 | 0.9 | -4.11 | 0.70 | 0.78 | 2.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 122929 | 6432 | 44 | 3370 | 0 | 0 | 0 | logfile |
✘ | 6PPH | 20436 | 2022-07-04 | 2019-07-06 | 3.8 | 3.69 | 3.57 | 3.7 | 0.007 | 1.07 | 1.0 | 0.06 | 10.48 | 0.01 | 2.230 | 4.86 | 0.49 | 4.9 | 95.0 | 0.2 | -4.52 | 0.48 | 0.79 | 2.27 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 73502 | 9326 | 21 | 0 | 0 | 0 | 0 | logfile |
✘ | 6S7T | 10112 | 2022-07-04 | 2019-07-05 | 3.5 | 3.70 | — | 3.7 | 0.007 | 0.95 | 0.0 | 0.05 | 14.74 | 0.01 | 1.345 | 12.01 | 2.55 | 5.7 | 94.2 | 0.1 | -2.02 | 0.70 | 0.86 | 3.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18445 | 2164 | 16 | 0 | 46 | 0 | 0 | logfile |
✘ | 6K61 | 9918 | 2022-07-08 | 2019-05-31 | 2.37 | 2.37 | — | 2.4 | 0.012 | 1.43 | 0.0 | 0.08 | 18.22 | 0.02 | 1.219 | 8.00 | 0.96 | 3.1 | 96.7 | 0.1 | -2.65 | 0.60 | 0.88 | 5.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 49283 | 4542 | 44 | 0 | 259 | 0 | 0 | logfile |
✘ | 6RWN | 10043 | 2022-07-04 | 2019-06-05 | 3.1 | 3.33 | 3.15 | 3.3 | 0.004 | 0.58 | 0.0 | 0.05 | 16.14 | 0.01 | 1.225 | 2.82 | 3.66 | 3.1 | 96.9 | 0.0 | -2.96 | 0.71 | 0.83 | 3.05 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18346 | 2076 | 26 | 86 | 16 | 8 | 0 | logfile |
✘ | 6JCZ | 9800 | 2022-07-03 | 2019-01-30 | 3.35 | 4.22 | — | 3.7 | 0.006 | 0.78 | 0.0 | 0.04 | 15.40 | 0.00 | 1.260 | 3.80 | 0.00 | 6.8 | 93.2 | 0.0 | -5.41 | 0.85 | 0.74 | 2.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 63476 | 3959 | 36 | 0 | 48 | 99 | 31525 | logfile |
✘ | 6GiQ | 0004 | 2022-07-07 | 2018-05-15 | 3.23 | 3.67 | 3.34 | 3.6 | 0.010 | 1.26 | 2.0 | 0.07 | 12.12 | 0.01 | 1.203 | 5.99 | 0.45 | 5.9 | 93.9 | 0.2 | -3.41 | 0.74 | 0.82 | 2.93 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 44120 | 5439 | 42 | 0 | 57 | 0 | 0 | logfile |
✘ | 6oRE | 20173 | 2022-07-07 | 2019-04-30 | 2.9 | 3.38 | — | 3.0 | 0.008 | 0.74 | 2.0 | 0.04 | 13.98 | 0.01 | 1.173 | 4.62 | 0.34 | 3.4 | 96.5 | 0.1 | -3.76 | 0.91 | 0.91 | 3.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 144774 | 5710 | 67 | 4642 | 438 | 0 | 0 | logfile |
✘ | 6RWo | 10044 | 2022-07-04 | 2019-06-05 | 3.05 | 3.20 | 3.05 | 3.2 | 0.006 | 0.67 | 0.0 | 0.05 | 17.06 | 0.01 | 1.210 | 2.40 | 4.10 | 3.3 | 96.7 | 0.0 | -3.00 | 0.67 | 0.83 | 3.08 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18366 | 2076 | 26 | 86 | 16 | 6 | 0 | logfile |
✘ | 6U8Q | 20689 | 2022-07-04 | 2019-09-05 | 4.67 | 4.92 | — | 4.6 | 0.004 | 0.77 | 0.0 | 0.05 | 18.46 | 0.01 | 1.180 | 7.41 | 4.07 | 3.8 | 96.1 | 0.2 | -3.92 | 0.76 | 0.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21129 | 2442 | 18 | 96 | 6 | 0 | 0 | logfile |
✘ | 6G72 | 4356 | 2022-07-04 | 2018-04-04 | 3.9 | 4.03 | 4.01 | 4.0 | 0.011 | 1.10 | 0.0 | 1.03 | 11.28 | 0.01 | 1.179 | 9.36 | 0.23 | 16.8 | 82.7 | 0.4 | -5.65 | 0.65 | 0.78 | 1.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64923 | 8071 | 55 | 0 | 14 | 0 | 0 | logfile |
✘ | 6V3K | 21038 | 2022-07-03 | 2019-11-25 | 3.4 | 3.77 | 3.45 | 3.7 | 0.005 | 0.70 | 0.0 | 0.04 | 19.28 | 0.01 | 1.178 | 9.82 | 0.19 | 4.9 | 95.1 | 0.0 | -2.30 | 0.76 | 0.88 | 3.33 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11314 | 1226 | 16 | 72 | 10 | 0 | 0 | logfile |
✘ | 6DQS | 7983 | 2022-07-07 | 2018-06-11 | 4.12 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 139314 | 8750 | 8 | 0 | 8 | 0 | 69639 | logfile |
✘ | 5LC5 | 4032 | 2022-07-08 | 2016-06-19 | 4.35 | 4.47 | 4.28 | 4.3 | 0.009 | 1.47 | 18.0 | 1.11 | 14.86 | 0.01 | 1.587 | 6.09 | 3.67 | 8.6 | 87.7 | 3.7 | -4.81 | 0.69 | 0.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 51718 | 5916 | 52 | 0 | 1988 | 0 | 0 | logfile |
✘ | 3J9Y | 6311 | 2022-07-09 | 2015-03-23 | 3.9 | 3.83 | — | 3.9 | 0.005 | 0.83 | 0.0 | 0.04 | 15.03 | 0.00 | 0.974 | 10.35 | 3.21 | 10.9 | 85.6 | 3.4 | -3.83 | 0.76 | 0.77 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 148915 | 6657 | 58 | 4645 | 0 | 0 | 0 | logfile |
✘ | 5L3P | 4001 | 2022-07-09 | 2016-05-24 | 3.7 | 4.66 | — | 16.0 | 0.004 | 0.60 | 0.0 | 0.22 | 12.10 | 0.00 | 1.234 | 7.26 | 0.00 | 8.2 | 89.4 | 2.4 | -1.95 | 0.44 | 0.11 | 0.16 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 149606 | 6419 | 58 | 4704 | 76 | 0 | 0 | logfile |
✘ | 6DZV | 8940 | 2022-07-03 | 2018-07-05 | 4.2 | 4.78 | 4.79 | 4.8 | 0.013 | 0.67 | 0.0 | 0.07 | 9.30 | 0.00 | 1.356 | 3.69 | 0.00 | 3.8 | 96.2 | 0.0 | -4.08 | 0.49 | 0.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6121 | 765 | 4 | 0 | 4 | 0 | 0 | logfile |
✘ | 6VRL | 21370 | 2022-07-03 | 2020-02-07 | 3.8 | 3.98 | 4.22 | 3.9 | 0.002 | 0.55 | 0.0 | 0.04 | 13.57 | 0.00 | 1.365 | 10.65 | 0.00 | 4.9 | 95.1 | 0.0 | -3.12 | 0.49 | 0.69 | 1.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6141 | 764 | 4 | 0 | 4 | 0 | 0 | logfile |
✘ | 6JH6 | 9825 | 2022-07-03 | 2019-02-17 | 4.8 | 5.31 | — | 4.8 | 0.006 | 1.07 | 1.0 | 0.05 | 11.37 | 0.01 | 2.197 | 12.23 | 0.58 | 10.8 | 88.9 | 0.3 | -4.03 | 0.79 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 108924 | 14244 | 12 | 0 | 8 | 0 | 0 | logfile |