Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6KAC	9955	2022-07-05	2019-06-21	2.7	2.84	—	2.8	0.011	1.46	0.0	0.06	14.99	0.02	1.198	8.43	0.64	4.9	95.0	0.1	-4.64	0.72	0.84	4.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	77947	7858	126	0	318	595	0	logfile
✘	5H4P	9569	2022-07-05	2016-11-01	3.07	3.58	—	3.5	0.008	0.86	0.0	0.05	15.30	0.01	1.709	13.85	0.15	6.2	92.9	0.9	-4.11	0.70	0.78	2.90	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	122929	6432	44	3370	0	0	0	logfile
✘	6PPH	20436	2022-07-04	2019-07-06	3.8	3.69	3.57	3.7	0.007	1.07	1.0	0.06	10.48	0.01	2.230	4.86	0.49	4.9	95.0	0.2	-4.52	0.48	0.79	2.27	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	73502	9326	21	0	0	0	0	logfile
✘	6S7T	10112	2022-07-04	2019-07-05	3.5	3.70	—	3.7	0.007	0.95	0.0	0.05	14.74	0.01	1.345	12.01	2.55	5.7	94.2	0.1	-2.02	0.70	0.86	3.46	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18445	2164	16	0	46	0	0	logfile
✘	6K61	9918	2022-07-08	2019-05-31	2.37	2.37	—	2.4	0.012	1.43	0.0	0.08	18.22	0.02	1.219	8.00	0.96	3.1	96.7	0.1	-2.65	0.60	0.88	5.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	49283	4542	44	0	259	0	0	logfile
✘	6RWN	10043	2022-07-04	2019-06-05	3.1	3.33	3.15	3.3	0.004	0.58	0.0	0.05	16.14	0.01	1.225	2.82	3.66	3.1	96.9	0.0	-2.96	0.71	0.83	3.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18346	2076	26	86	16	8	0	logfile
✘	6JCZ	9800	2022-07-03	2019-01-30	3.35	4.22	—	3.7	0.006	0.78	0.0	0.04	15.40	0.00	1.260	3.80	0.00	6.8	93.2	0.0	-5.41	0.85	0.74	2.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	63476	3959	36	0	48	99	31525	logfile
✘	6GiQ	0004	2022-07-07	2018-05-15	3.23	3.67	3.34	3.6	0.010	1.26	2.0	0.07	12.12	0.01	1.203	5.99	0.45	5.9	93.9	0.2	-3.41	0.74	0.82	2.93	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	44120	5439	42	0	57	0	0	logfile
✘	6oRE	20173	2022-07-07	2019-04-30	2.9	3.38	—	3.0	0.008	0.74	2.0	0.04	13.98	0.01	1.173	4.62	0.34	3.4	96.5	0.1	-3.76	0.91	0.91	3.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	144774	5710	67	4642	438	0	0	logfile
✘	6RWo	10044	2022-07-04	2019-06-05	3.05	3.20	3.05	3.2	0.006	0.67	0.0	0.05	17.06	0.01	1.210	2.40	4.10	3.3	96.7	0.0	-3.00	0.67	0.83	3.08	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18366	2076	26	86	16	6	0	logfile
✘	6U8Q	20689	2022-07-04	2019-09-05	4.67	4.92	—	4.6	0.004	0.77	0.0	0.05	18.46	0.01	1.180	7.41	4.07	3.8	96.1	0.2	-3.92	0.76	0.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21129	2442	18	96	6	0	0	logfile
✘	6G72	4356	2022-07-04	2018-04-04	3.9	4.03	4.01	4.0	0.011	1.10	0.0	1.03	11.28	0.01	1.179	9.36	0.23	16.8	82.7	0.4	-5.65	0.65	0.78	1.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64923	8071	55	0	14	0	0	logfile
✘	6V3K	21038	2022-07-03	2019-11-25	3.4	3.77	3.45	3.7	0.005	0.70	0.0	0.04	19.28	0.01	1.178	9.82	0.19	4.9	95.1	0.0	-2.30	0.76	0.88	3.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11314	1226	16	72	10	0	0	logfile
✘	6DQS	7983	2022-07-07	2018-06-11	4.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	139314	8750	8	0	8	0	69639	logfile
✘	5LC5	4032	2022-07-08	2016-06-19	4.35	4.47	4.28	4.3	0.009	1.47	18.0	1.11	14.86	0.01	1.587	6.09	3.67	8.6	87.7	3.7	-4.81	0.69	0.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	51718	5916	52	0	1988	0	0	logfile
✘	3J9Y	6311	2022-07-09	2015-03-23	3.9	3.83	—	3.9	0.005	0.83	0.0	0.04	15.03	0.00	0.974	10.35	3.21	10.9	85.6	3.4	-3.83	0.76	0.77	0.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	148915	6657	58	4645	0	0	0	logfile
✘	5L3P	4001	2022-07-09	2016-05-24	3.7	4.66	—	16.0	0.004	0.60	0.0	0.22	12.10	0.00	1.234	7.26	0.00	8.2	89.4	2.4	-1.95	0.44	0.11	0.16	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	149606	6419	58	4704	76	0	0	logfile
✘	6DZV	8940	2022-07-03	2018-07-05	4.2	4.78	4.79	4.8	0.013	0.67	0.0	0.07	9.30	0.00	1.356	3.69	0.00	3.8	96.2	0.0	-4.08	0.49	0.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6121	765	4	0	4	0	0	logfile
✘	6VRL	21370	2022-07-03	2020-02-07	3.8	3.98	4.22	3.9	0.002	0.55	0.0	0.04	13.57	0.00	1.365	10.65	0.00	4.9	95.1	0.0	-3.12	0.49	0.69	1.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6141	764	4	0	4	0	0	logfile
✘	6JH6	9825	2022-07-03	2019-02-17	4.8	5.31	—	4.8	0.006	1.07	1.0	0.05	11.37	0.01	2.197	12.23	0.58	10.8	88.9	0.3	-4.03	0.79	0.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	108924	14244	12	0	8	0	0	logfile

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