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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6JZo | 9898 | 2023-11-18 | 2019-05-03 | 3.28 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21405 | 2657 | 8 | 0 | 12 | 0 | 0 | logfile |
✘ | 6SGA | 10177 | 2023-11-20 | 2019-08-03 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 137038 | 15423 | 77 | 463 | 790 | 0 | 0 | logfile |
✘ | 7ND7 | 12278 | 2023-11-21 | 2021-01-30 | 3.6 | 3.91 | — | 3.8 | 0.004 | 0.63 | 0.0 | 0.05 | 11.00 | 0.00 | 2.229 | 3.62 | 0.38 | 3.7 | 96.2 | 0.2 | -0.12 | 0.77 | 0.72 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29591 | 3699 | 30 | 0 | 64 | 0 | 0 | logfile |
✘ | 5UCY | 8539 | 2023-11-19 | 2016-12-22 | 4.6 | 4.99 | — | 4.6 | 0.011 | 1.21 | 3.0 | 0.06 | 13.21 | 0.01 | 0.244 | 89.25 | 0.68 | 11.3 | 88.3 | 0.5 | -4.47 | 0.50 | 0.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24990 | 2610 | 12 | 3 | 6 | 0 | 4452 | logfile |
✘ | 7DXH | 30909 | 2023-11-17 | 2021-01-18 | 3.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20054 | 2150 | 31 | 0 | 69 | 0 | 0 | logfile |
✘ | 6MN7 | 9166 | 2023-11-18 | 2018-10-01 | 4.8 | 5.01 | — | 5.0 | 0.016 | 2.23 | 12.0 | 0.12 | 10.62 | 0.02 | 1.395 | 35.74 | 0.57 | 8.6 | 89.4 | 2.0 | -2.34 | 0.50 | 0.19 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21447 | 2418 | 66 | 0 | 192 | 0 | 0 | logfile |
✘ | 8KD7 | 37127 | 2023-11-19 | 2023-08-09 | 3.09 | 3.16 | 3.03 | 3.0 | 0.004 | 0.88 | 0.0 | 0.05 | 24.38 | 0.01 | 1.768 | 8.13 | 0.25 | 4.9 | 95.1 | 0.0 | -1.79 | 0.77 | 0.72 | 0.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24894 | 2299 | 16 | 305 | 0 | 0 | 0 | logfile |
✘ | 6DG8 | 7883 | 2023-11-16 | 2018-05-17 | 3.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16715 | 1955 | 24 | 0 | 40 | 0 | 0 | logfile |
✘ | 6Hio | 0226 | 2023-11-16 | 2018-08-30 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16085 | 1925 | 20 | 0 | 30 | 0 | 0 | logfile |
✘ | 8SS6 | 40745 | 2023-11-20 | 2023-05-08 | 3.01 | 3.32 | 3.16 | 3.3 | 0.017 | 1.38 | 0.0 | 0.28 | 14.96 | 0.01 | 2.303 | 4.80 | 1.05 | 7.9 | 91.7 | 0.4 | -5.47 | 0.68 | 0.76 | 3.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31609 | 3794 | 12 | 0 | 46 | 0 | 0 | logfile |
✘ | 7CFS | 30346 | 2023-11-14 | 2020-06-28 | 3.56 | 3.72 | — | 3.7 | 0.008 | 0.94 | 0.0 | 0.06 | 15.94 | 0.01 | 1.835 | 5.64 | 0.60 | 5.9 | 94.1 | 0.0 | -5.35 | 0.79 | 0.84 | 2.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9974 | 1278 | 6 | 0 | 10 | 0 | 0 | logfile |
✘ | 7K10 | 22619 | 2023-11-14 | 2020-09-06 | 3.3 | 3.44 | — | 3.4 | 0.006 | 0.98 | 0.0 | 0.05 | 15.43 | 0.01 | 2.300 | 4.19 | 0.37 | 10.6 | 89.3 | 0.1 | -5.28 | 0.72 | 0.77 | 2.12 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10037 | 1259 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 8DQ0 | 27645 | 2023-11-18 | 2022-07-18 | 3.74 | 3.61 | 3.79 | 3.6 | 0.008 | 0.98 | 0.0 | 0.05 | 15.88 | 0.01 | 2.203 | 6.20 | 1.20 | 4.9 | 95.1 | 0.0 | -1.54 | 0.53 | 0.72 | 2.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17129 | 1075 | 6 | 0 | 2 | 0 | 8445 | logfile |
✘ | 6AEi | 9615 | 2023-11-18 | 2018-08-05 | 2.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21142 | 2568 | 8 | 0 | 13 | 0 | 0 | logfile |
✘ | 8HKU | 34860 | 2023-11-13 | 2022-11-28 | 2.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | logfile |
✘ | 7UFM | 26477 | 2023-11-22 | 2022-03-22 | 3.9 | 2.97 | 4.04 | 1.8 | 0.009 | 1.77 | 14.0 | 0.08 | 22.53 | 0.01 | 1.075 | 9.26 | 24.41 | 11.0 | 89.0 | 0.0 | -4.66 | 0.68 | 0.65 | 0.50 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 36392 | 4354 | 30 | 72 | 14 | 0 | 0 | logfile |
✘ | 5XNN | 6743 | 2023-11-14 | 2017-05-23 | 3.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10020 | 854 | 8 | 0 | 72 | 0 | 0 | logfile |
✘ | 8DDX | 27345 | 2023-11-21 | 2022-06-19 | 3.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35500 | 4295 | 14 | 0 | 81 | 0 | 0 | logfile |
✘ | 7ND4 | 12275 | 2023-11-20 | 2021-01-30 | 3.6 | 3.31 | — | 3.2 | 0.004 | 0.62 | 3.0 | 0.05 | 11.02 | 0.00 | 2.233 | 3.79 | 0.28 | 4.1 | 95.6 | 0.2 | -0.12 | 0.74 | 0.79 | 2.91 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29848 | 3729 | 30 | 0 | 71 | 0 | 0 | logfile |
✘ | 5GAQ | 8015 | 2023-11-17 | 2016-01-05 | 3.1 | 3.36 | — | 3.2 | 0.006 | 1.02 | 0.0 | 0.08 | 11.97 | 0.00 | 2.289 | 1.94 | 0.80 | 7.3 | 92.7 | 0.0 | -3.69 | 0.56 | 0.50 | 3.88 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20574 | 2592 | 9 | 0 | 0 | 0 | 0 | logfile |