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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6iGM | 9668 | 2023-11-18 | 2018-09-25 | 4.0 | 4.14 | — | 4.1 | 0.004 | 0.88 | 0.0 | 0.05 | 10.13 | 0.01 | 1.054 | 20.78 | 2.70 | 7.3 | 91.6 | 1.1 | -4.30 | 0.70 | 0.62 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24257 | 3054 | 9 | 0 | 62 | 0 | 0 | logfile |
✘ | 7DGR | 30674 | 2023-11-13 | 2020-11-12 | 4.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 107305 | 13811 | 102 | 0 | 37 | 0 | 0 | logfile |
✘ | 6Z5S | 11081 | 2023-11-18 | 2020-05-27 | 2.65 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22794 | 2214 | 66 | 0 | 91 | 10 | 0 | logfile |
✘ | 6PTJ | 20471 | 2023-11-21 | 2019-07-15 | 3.8 | 4.13 | — | 4.0 | 0.008 | 1.12 | 1.0 | 0.06 | 14.87 | 0.01 | 2.011 | 6.46 | 0.39 | 10.6 | 89.2 | 0.2 | -5.32 | 0.86 | 0.82 | 1.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34361 | 4280 | 14 | 0 | 0 | 0 | 0 | logfile |
✘ | 6Z3R | 11063 | 2023-11-21 | 2020-05-21 | 2.97 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35481 | 2509 | 6 | 0 | 131 | 0 | 16494 | logfile |
✘ | 5YKE | 6831 | 2023-11-20 | 2017-10-14 | 4.11 | 4.22 | 3.92 | 4.1 | 0.005 | 0.81 | 0.0 | 0.05 | 13.28 | 0.01 | 2.246 | 11.57 | 7.60 | 3.7 | 95.9 | 0.4 | -1.76 | 0.66 | 0.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30636 | 3912 | 12 | 0 | 4 | 0 | 0 | logfile |
✘ | 7AP9 | 11851 | 2023-11-20 | 2020-10-16 | 3.01 | 3.70 | — | 3.2 | 0.008 | 0.68 | 0.0 | 0.05 | 12.00 | 0.00 | 2.023 | 4.33 | 2.91 | 6.9 | 93.1 | 0.0 | -0.45 | 0.90 | 0.88 | 3.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30881 | 3782 | 14 | 11 | 5 | 0 | 0 | logfile |
✘ | 6Y5A | 10692 | 2023-11-21 | 2020-02-25 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32403 | 1940 | 10 | 0 | 5 | 0 | 16272 | logfile |
✘ | 6C26 | 7336 | 2023-11-17 | 2018-01-06 | 3.5 | 3.64 | — | 3.6 | 0.011 | 1.41 | 0.0 | 0.07 | 15.78 | 0.01 | 1.833 | 6.82 | 2.07 | 9.8 | 90.2 | 0.0 | -4.59 | 0.67 | 0.80 | 3.65 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17188 | 2077 | 16 | 0 | 19 | 0 | 0 | logfile |
✘ | 6VDK | 21151 | 2023-11-15 | 2019-12-27 | 4.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 12309 | 1274 | 14 | 104 | 6 | 0 | 0 | logfile |
✘ | 6RKo | 4908 | 2023-11-14 | 2019-04-30 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7289 | 875 | 8 | 0 | 9 | 31 | 0 | logfile |
✘ | 6HZ7 | 0313 | 2023-11-16 | 2018-10-22 | 4.3 | 4.43 | 4.32 | 4.3 | 0.008 | 0.97 | 0.0 | 0.05 | 14.60 | 0.01 | 1.959 | 2.86 | 0.59 | 2.9 | 97.1 | 0.0 | -0.47 | 0.81 | 0.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 67582 | 4120 | 26 | 6 | 12 | 0 | 33368 | logfile |
✘ | 6Z5R | 11080 | 2023-11-19 | 2020-05-27 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25048 | 2336 | 72 | 0 | 105 | 3 | 0 | logfile |
✘ | 6QEM | 4538 | 2023-11-15 | 2019-01-08 | 3.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65750 | 4104 | 24 | 26 | 16 | 0 | 32652 | logfile |
✘ | 6PM5 | 20388 | 2023-11-16 | 2019-07-01 | 3.1 | 3.38 | — | 3.4 | 0.002 | 0.49 | 0.0 | 0.06 | 6.82 | 0.00 | 2.275 | 4.99 | 0.00 | 2.4 | 97.6 | 0.0 | -4.42 | 0.52 | 0.78 | 3.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13975 | 1735 | 15 | 0 | 15 | 0 | 0 | logfile |
✘ | 7A95 | 11685 | 2023-11-20 | 2020-09-01 | 4.3 | 4.83 | 4.39 | 4.3 | 0.003 | 0.47 | 2.0 | 0.04 | 5.77 | 0.00 | 2.226 | 3.53 | 0.90 | 11.0 | 89.0 | 0.0 | -4.57 | 0.87 | 0.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29887 | 3794 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 3JCU | 6617 | 2023-11-18 | 2016-03-10 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 75994 | 7648 | 76 | 0 | 322 | 0 | 0 | logfile |
✘ | 6SHT | 10205 | 2023-11-22 | 2019-08-08 | 2.73 | 2.88 | 2.75 | 2.8 | 0.015 | 1.55 | 0.0 | 0.07 | 19.28 | 0.01 | 0.000 | 7.75 | 5.56 | 0.6 | 98.8 | 0.6 | -2.82 | 0.81 | 0.91 | 3.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37152 | 4176 | 24 | 0 | 48 | 1728 | 0 | logfile |
✘ | 8DDR | 27339 | 2023-11-21 | 2022-06-18 | 3.2 | 2.96 | 3.18 | 3.2 | 0.015 | 0.94 | 0.0 | 0.07 | 11.39 | 0.00 | 2.251 | 5.05 | 1.77 | 3.3 | 96.7 | 0.0 | 1.33 | 0.82 | 0.82 | 2.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32074 | 3872 | 12 | 0 | 78 | 0 | 0 | logfile |
✘ | 6UUW | 20902 | 2023-11-21 | 2019-11-01 | 2.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32438 | 4136 | 12 | 0 | 14 | 27 | 0 | logfile |