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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 5GW4 | 9540 | 2023-02-24 | 2016-09-08 | 4.7 | 4.89 | — | 4.8 | 0.001 | 0.42 | 0.0 | 0.04 | 7.26 | 0.00 | 2.187 | 6.49 | 0.00 | 4.3 | 95.6 | 0.1 | -3.58 | 0.77 | 0.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64544 | 8446 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 7YPA | 33997 | 2023-02-25 | 2022-08-03 | 3.05 | 3.16 | 3.05 | 3.1 | 0.003 | 0.59 | 0.0 | 0.04 | 14.85 | 0.01 | 2.191 | 3.02 | 0.08 | 3.1 | 96.9 | 0.0 | -3.59 | 0.76 | 0.81 | 2.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26022 | 3129 | 10 | 86 | 3 | 0 | 0 | logfile |
✘ | 6JZo | 9898 | 2023-02-23 | 2019-05-03 | 3.28 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21405 | 2657 | 8 | 0 | 12 | 0 | 0 | logfile |
✘ | 6DJN | 7937 | 2023-02-20 | 2018-05-25 | 3.1 | 3.26 | — | 3.2 | 0.011 | 0.95 | 0.0 | 0.06 | 10.67 | 0.01 | 2.106 | 5.53 | 0.00 | 5.4 | 94.6 | 0.0 | -4.61 | 0.69 | 0.86 | 4.00 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11768 | 1488 | 8 | 0 | 12 | 0 | 0 | logfile |
✔ | 6LHW | 0901 | 2023-02-21 | 2019-12-10 | 4.84 | 5.29 | — | 4.6 | 0.008 | 1.37 | 1.0 | 0.05 | 5.28 | 0.00 | 1.530 | 14.43 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.64 | 0.56 | — | 4.6 | 0.008 | 1.29 | 0.0 | 0.04 | 6.56 | 0.00 | 2.027 | 44.00 | 0.00 | 0.0 | 0.0 | 0.0 | — | 3.20 | 0.83 | 0.64 | — | 7644 | 0 | 3 | 0 | 1541 | 0 | 0 | logfile |
✘ | 5MLV | 3527 | 2023-02-22 | 2016-12-07 | 4.5 | 4.47 | — | 4.4 | 0.010 | 1.21 | 0.0 | 0.06 | 17.43 | 0.01 | 2.060 | 8.31 | 0.20 | 9.0 | 91.0 | 0.0 | -4.85 | 0.67 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 56928 | 7218 | 36 | 6 | 24 | 0 | 0 | logfile |
✘ | 6Hio | 0226 | 2023-02-21 | 2018-08-30 | 4.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16085 | 1925 | 20 | 0 | 30 | 0 | 0 | logfile |
✘ | 6AEi | 9615 | 2023-02-23 | 2018-08-05 | 2.89 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21142 | 2568 | 8 | 0 | 13 | 0 | 0 | logfile |
✘ | 6oES | 20036 | 2023-02-22 | 2019-03-27 | 3.06 | 3.17 | — | 3.1 | 0.005 | 0.77 | 2.0 | 0.05 | 19.56 | 0.01 | 2.226 | 4.56 | 2.87 | 3.4 | 96.4 | 0.2 | -3.12 | 0.81 | 0.83 | 3.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16829 | 1784 | 14 | 128 | 4 | 2 | 0 | logfile |
✔ | 6PoM | 20416 | 2023-02-17 | 2019-07-04 | 4.9 | 5.01 | — | 5.0 | 0.003 | 0.64 | 0.0 | 0.03 | 17.29 | 0.00 | 2.075 | 3.10 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.61 | 0.64 | — | 5.0 | 0.010 | 1.28 | 0.0 | 0.06 | 21.46 | 0.01 | 1.930 | 61.80 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.76 | 0.75 | 0.80 | — | 4937 | 0 | 2 | 230 | 0 | 0 | 0 | logfile |
✘ | 7WTC | 32778 | 2023-02-26 | 2022-02-04 | 4.0 | 4.61 | — | 3.1 | 0.008 | 0.82 | 0.0 | 0.05 | 13.69 | 0.01 | 2.060 | 22.27 | 0.10 | 8.0 | 92.0 | 0.1 | -0.78 | 0.86 | 0.65 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28418 | 3661 | 8 | 0 | 6 | 0 | 0 | logfile |
✘ | 6BWF | 7298 | 2023-02-24 | 2017-12-14 | 4.1 | 4.19 | — | 4.2 | 0.008 | 1.49 | 2.0 | 0.07 | 12.82 | 0.01 | 2.204 | 12.32 | 0.59 | 12.1 | 86.6 | 1.3 | -5.34 | 0.62 | 0.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22174 | 2584 | 4 | 0 | 480 | 0 | 0 | logfile |
✘ | 6PM5 | 20388 | 2023-02-21 | 2019-07-01 | 3.1 | 3.38 | — | 3.4 | 0.001 | 0.42 | 0.0 | 0.06 | 6.80 | 0.00 | 2.275 | 4.99 | 0.00 | 2.4 | 97.6 | 0.0 | -4.42 | 0.52 | 0.78 | 3.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13975 | 1735 | 15 | 0 | 15 | 0 | 0 | logfile |
✘ | 6i53 | 4411 | 2023-02-21 | 2018-11-12 | 3.2 | 3.37 | 3.20 | 3.3 | 0.006 | 0.88 | 0.0 | 0.05 | 9.04 | 0.01 | 2.264 | 3.96 | 0.00 | 3.7 | 96.3 | 0.0 | -4.72 | 0.52 | 0.70 | 4.33 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15362 | 1821 | 16 | 0 | 34 | 0 | 0 | logfile |
✘ | 6RoH | 4972 | 2023-02-20 | 2019-05-13 | 2.8 | 2.94 | 2.83 | 2.9 | 0.006 | 0.88 | 0.0 | 0.05 | 13.67 | 0.01 | 1.709 | 4.00 | 0.23 | 3.4 | 96.6 | 0.0 | -4.73 | 0.68 | 0.79 | 3.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11758 | 1449 | 7 | 0 | 9 | 2 | 0 | logfile |
✘ | 6HiQ | 0227 | 2023-02-21 | 2018-08-30 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16110 | 1925 | 20 | 0 | 30 | 0 | 0 | logfile |
✘ | 6NZK | 0557 | 2023-02-27 | 2019-02-13 | 2.8 | 2.92 | — | 2.9 | 0.025 | 1.80 | 0.0 | 0.17 | 10.31 | 0.01 | 2.033 | 0.97 | 0.39 | 1.6 | 98.3 | 0.1 | 0.52 | 0.79 | 0.85 | 4.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29268 | 3525 | 39 | 0 | 105 | 396 | 0 | logfile |
✘ | 7XL3 | 33271 | 2023-02-25 | 2022-04-21 | 3.13 | 3.20 | — | 3.2 | 0.002 | 0.39 | 0.0 | 0.04 | 12.03 | 0.00 | 2.263 | 4.77 | 1.08 | 2.9 | 97.1 | 0.0 | -4.73 | 0.73 | 0.79 | 2.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 25700 | 3480 | 8 | 0 | 3 | 0 | 0 | logfile |
✘ | 6Y5A | 10692 | 2023-02-28 | 2020-02-25 | 2.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32403 | 1940 | 10 | 0 | 5 | 0 | 16272 | logfile |
✘ | 7K10 | 22619 | 2023-02-19 | 2020-09-06 | 3.3 | 3.44 | — | 3.4 | 0.006 | 0.98 | 0.0 | 0.05 | 15.43 | 0.01 | 2.300 | 4.19 | 0.37 | 10.6 | 89.3 | 0.1 | -5.28 | 0.72 | 0.77 | 2.12 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10037 | 1259 | 1 | 0 | 0 | 0 | 0 | logfile |