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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6PK7 | 20355 | 2024-03-17 | 2019-06-28 | 3.1 | 3.55 | — | 3.5 | 0.011 | 1.25 | 8.0 | 0.07 | 12.86 | 0.01 | 1.655 | 11.20 | 0.41 | 8.6 | 91.2 | 0.2 | -4.98 | 0.66 | 0.81 | 3.27 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17820 | 2228 | 8 | 0 | 8 | 0 | 0 | logfile |
✘ | 7M6Q | 23704 | 2024-03-16 | 2021-03-26 | 2.91 | 3.75 | 2.97 | 3.5 | 0.009 | 1.16 | 5.0 | 0.07 | 15.90 | 0.01 | 2.289 | 5.71 | 0.00 | 3.1 | 96.9 | 0.0 | -0.39 | 0.82 | 0.82 | 2.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14725 | 1800 | 10 | 0 | 10 | 0 | 0 | logfile |
✘ | 5W9J | 8785 | 2024-03-22 | 2017-06-23 | 4.8 | 4.91 | 5.09 | 4.7 | 0.013 | 1.57 | 0.0 | 0.07 | 11.98 | 0.02 | 1.881 | 5.79 | 0.90 | 4.0 | 94.8 | 1.2 | 0.53 | 0.78 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32958 | 4257 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 7XiD | 33203 | 2024-03-22 | 2022-04-12 | 3.3 | 3.75 | 3.57 | 3.6 | 0.008 | 1.04 | 2.0 | 0.08 | 12.61 | 0.01 | 1.822 | 9.42 | 1.12 | 6.0 | 92.4 | 1.6 | -2.95 | 0.65 | 0.62 | 1.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34256 | 4153 | 33 | 0 | 91 | 0 | 0 | logfile |
✘ | 7BR7 | 30158 | 2024-03-16 | 2020-03-26 | 4.3 | 3.99 | — | 4.0 | 0.006 | 0.94 | 0.0 | 0.06 | 15.20 | 0.01 | 1.573 | 8.92 | 0.70 | 6.8 | 93.2 | 0.0 | -4.57 | 0.44 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 73138 | 9263 | 21 | 0 | 0 | 0 | 0 | logfile |
✘ | 7BiN | 12192 | 2024-03-18 | 2021-01-12 | 3.2 | 1.68 | 3.08 | 3.1 | 0.010 | 0.90 | 0.0 | 0.05 | 15.16 | 0.01 | 1.043 | 16.06 | 0.04 | 9.8 | 90.1 | 0.1 | -0.58 | 0.53 | 0.67 | 1.12 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 81721 | 10887 | 56 | 0 | 0 | 0 | 0 | logfile |
✘ | 7PCQ | 13325 | 2024-03-11 | 2021-08-03 | 3.62 | 4.96 | 3.71 | 4.1 | 0.013 | 1.55 | 0.0 | 0.10 | 13.62 | 0.01 | 2.557 | 1.30 | 0.78 | 2.8 | 97.2 | 0.0 | 1.72 | 0.91 | 0.78 | 1.86 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7350 | 911 | 9 | 0 | 4 | 0 | 0 | logfile |
✘ | 7CZY | 30521 | 2024-03-21 | 2020-09-09 | 3.3 | 3.38 | — | 3.3 | 0.011 | 1.02 | 0.0 | 0.07 | 17.63 | 0.01 | 1.865 | 25.79 | 12.01 | 10.3 | 87.0 | 2.6 | -3.80 | 0.62 | 0.70 | 1.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 31186 | 3880 | 33 | 0 | 76 | 0 | 0 | logfile |
✔ | 7ZFW | 14704 | 2024-03-15 | 2022-04-01 | 3.8 | 4.62 | 3.46 | 3.0 | 0.006 | 0.83 | 0.0 | 0.05 | 26.57 | 0.03 | 2.266 | 2.77 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.32 | 0.81 | — | 3.1 | 0.009 | 0.93 | 0.0 | 0.05 | 27.81 | 0.01 | 1.930 | 40.88 | 0.00 | 0.0 | 0.0 | 0.0 | — | 3.56 | 0.33 | 0.85 | — | 13188 | 0 | 1 | 615 | 0 | 0 | 0 | logfile |
✘ | 6RH3 | 4882 | 2024-03-20 | 2019-04-18 | 3.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 26300 | 3207 | 9 | 58 | 4 | 0 | 0 | logfile |
✘ | 7KiM | 22887 | 2024-03-21 | 2020-10-23 | 3.38 | 4.28 | — | 3.9 | 0.008 | 0.88 | 1.0 | 0.05 | 18.44 | 0.01 | 1.482 | 7.47 | 7.44 | 7.3 | 92.6 | 0.1 | -2.59 | 0.88 | 0.85 | 1.62 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29573 | 3572 | 13 | 90 | 4 | 0 | 0 | logfile |
✘ | 7oUG | 13076 | 2024-03-16 | 2021-06-11 | 3.1 | 2.33 | 3.12 | 1.7 | 0.004 | 0.74 | 0.0 | 0.04 | 17.65 | 0.01 | 1.769 | 5.66 | 0.14 | 2.4 | 97.6 | 0.0 | 0.28 | 0.78 | 0.75 | 2.41 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15090 | 1664 | 16 | 80 | 10 | 8 | 0 | logfile |
✘ | 7EPX | 31249 | 2024-03-21 | 2021-04-28 | 3.0 | 3.08 | — | 3.0 | 0.011 | 1.03 | 0.0 | 0.07 | 17.35 | 0.01 | 1.934 | 19.43 | 10.46 | 10.9 | 86.7 | 2.4 | -3.96 | 0.72 | 0.78 | 2.28 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30846 | 3862 | 33 | 0 | 71 | 0 | 0 | logfile |
✘ | 6ADQ | 9610 | 2024-03-25 | 2018-08-01 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 48946 | 6026 | 44 | 0 | 74 | 0 | 0 | logfile |
✘ | 8CSW | 26973 | 2024-03-10 | 2022-05-13 | 2.5 | 2.22 | 2.46 | 2.3 | 0.007 | 0.86 | 0.0 | 0.06 | 14.46 | 0.01 | 2.219 | 5.03 | 2.33 | 1.2 | 98.8 | 0.0 | 0.83 | 0.64 | 0.88 | 6.02 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 5332 | 657 | 1 | 0 | 0 | 165 | 0 | logfile |
✘ | 8B5L | 15860 | 2024-03-22 | 2022-09-23 | 2.86 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 145148 | 7621 | 64 | 3890 | 183 | 0 | 0 | logfile |
✘ | 7TYL | 26184 | 2024-03-14 | 2022-02-13 | 3.3 | 3.46 | 3.18 | 3.5 | 0.003 | 0.59 | 0.0 | 0.04 | 12.73 | 0.00 | 2.245 | 6.53 | 0.43 | 1.8 | 98.1 | 0.2 | -2.52 | 0.61 | 0.67 | 2.72 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8978 | 1156 | 6 | 0 | 1 | 0 | 0 | logfile |
✘ | 6VPV | 21320 | 2024-03-18 | 2020-02-04 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 72192 | 6753 | 60 | 0 | 384 | 0 | 0 | logfile |
✔ | 7YGB | 33814 | 2024-03-11 | 2022-07-11 | 2.62 | 3.15 | 2.70 | 2.9 | 0.007 | 0.52 | 0.0 | 0.03 | 24.24 | 0.00 | 2.079 | 13.50 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.88 | 0.84 | — | 2.9 | 0.007 | 0.64 | 0.0 | 0.04 | 23.99 | 0.00 | 1.834 | 13.50 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.87 | 0.92 | 0.92 | — | 8738 | 0 | 5 | 407 | 54 | 0 | 0 | logfile |
✔ | 7YG8 | 33811 | 2024-03-11 | 2022-07-11 | 2.97 | 3.59 | 3.04 | 3.0 | 0.002 | 0.48 | 0.0 | 0.03 | 24.52 | 0.00 | 2.042 | 13.48 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.89 | 0.82 | — | 3.0 | 0.006 | 0.65 | 0.0 | 0.04 | 24.62 | 0.00 | 1.829 | 19.71 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.38 | 0.91 | 0.89 | — | 8440 | 0 | 3 | 395 | 5 | 0 | 0 | logfile |