Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6GNi	0044	2022-07-03	2018-05-30	4.9	4.56	4.23	4.2	0.008	1.48	0.0	0.10	15.17	0.01	1.943	21.63	3.68	6.3	91.3	2.4	-3.39	0.44	0.63	—	4.2	0.003	0.65	0.0	0.04	13.71	0.01	1.875	13.47	0.07	2.9	97.0	0.2	0.79	1.66	0.48	0.73	—	12937	1632	6	0	4	0	0	logfile
✔	7CCR	30340	2022-07-06	2020-06-17	4.9	6.57	—	4.8	0.007	0.96	0.0	0.06	24.75	0.01	1.593	7.21	0.11	4.4	95.6	0.0	-2.64	0.83	0.67	—	4.8	0.006	0.75	0.0	0.04	27.60	0.01	2.024	31.13	0.00	5.4	94.6	0.0	-0.29	1.56	0.88	0.78	—	29722	2202	22	588	0	0	0	logfile
✔	7BWA	30231	2022-07-03	2020-04-14	4.9	5.10	4.70	4.8	0.004	0.77	0.0	0.05	15.31	0.00	1.970	41.31	0.00	13.4	86.6	0.0	-4.15	0.80	0.64	—	4.8	0.003	0.74	0.0	0.05	14.24	0.00	2.128	19.77	0.00	8.6	91.4	0.0	-3.02	1.70	0.79	0.59	—	11670	1444	4	0	0	0	0	logfile
✔	6UPK	20840	2022-07-04	2019-10-17	4.9	7.69	6.08	7.1	0.005	0.94	0.0	0.05	20.35	0.01	1.570	20.47	0.00	7.2	92.8	0.0	-3.94	0.89	0.77	—	7.0	0.003	0.67	0.0	0.04	22.35	0.00	1.960	22.67	0.00	5.1	94.9	0.0	-1.43	2.95	0.90	0.83	—	13861	1314	10	144	54	0	0	logfile
✔	7K9L	22754	2022-07-03	2020-09-29	4.9	4.39	—	4.7	0.007	1.19	0.0	0.07	15.28	0.01	2.254	9.64	3.96	3.5	96.5	0.0	-1.98	0.67	0.78	—	4.7	0.003	0.75	0.0	0.04	14.20	0.00	2.241	18.09	0.36	5.0	95.0	0.0	-0.45	1.07	0.69	0.78	—	10472	1372	4	0	0	0	0	logfile
✔	7JGG	22326	2022-07-03	2020-07-19	4.88	8.00	—	7.7	0.002	0.46	0.0	0.03	13.22	0.00	1.988	54.49	0.00	3.3	96.5	0.2	1.67	0.66	0.64	—	7.5	0.002	0.46	0.0	0.03	12.61	0.00	1.976	80.83	0.00	4.5	95.5	0.0	1.72	1.70	0.67	0.69	—	4210	506	1	0	0	0	28	logfile
✘	6VY2	21456	2022-07-05	2020-02-25	4.86	6.05	—	5.2	0.006	0.91	0.0	0.07	14.28	0.00	2.056	18.44	4.96	5.7	93.8	0.5	-2.41	0.82	0.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21426	2442	66	0	180	0	0	logfile
✘	6S1N	10081	2022-07-04	2019-06-19	4.86	4.98	—	4.8	0.008	1.13	2.0	0.06	17.87	0.01	1.251	9.62	0.83	6.3	93.4	0.4	-3.47	0.73	0.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19726	2399	11	50	3	0	0	logfile
✔	7MDM	23775	2022-07-06	2021-04-05	4.86	5.09	—	5.0	0.005	1.19	0.0	0.07	15.37	0.01	2.261	9.38	0.03	7.9	92.1	0.0	-3.53	0.82	0.77	—	4.9	0.004	0.83	0.0	0.05	14.55	0.01	2.062	25.64	0.00	8.1	91.9	0.0	-1.92	1.82	0.83	0.79	—	31986	4051	12	0	6	0	0	logfile
✘	6HE4	0209	2022-07-03	2018-08-20	4.85	4.88	—	4.8	0.036	3.64	111.0	0.21	18.70	0.03	1.953	1.87	3.66	6.4	89.5	4.1	-2.84	0.55	0.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12684	1602	11	0	10	0	0	logfile
✔	6LHW	0901	2022-07-04	2019-12-10	4.84	5.29	—	4.6	0.008	1.37	1.0	0.05	5.28	0.00	1.530	14.43	0.00	0.0	0.0	0.0	—	0.64	0.56	—	4.6	0.008	1.29	0.0	0.04	6.56	0.00	2.037	44.10	0.00	0.0	0.0	0.0	—	3.20	0.83	0.64	—	7644	0	3	0	1541	0	0	logfile
✔	7NK2	12429	2022-07-06	2021-02-17	4.84	4.93	—	4.8	0.004	0.73	2.0	0.05	13.61	0.01	1.907	8.81	0.32	4.3	95.7	0.0	-0.71	0.61	0.43	—	4.8	0.004	0.70	0.0	0.04	13.73	0.01	1.840	20.24	0.00	7.0	93.0	0.0	-1.05	4.61	0.73	0.67	—	28776	1794	6	23	0	0	13868	logfile
✔	7NJ7	12375	2022-07-06	2021-02-16	4.82	5.23	—	4.8	0.004	0.73	1.0	0.04	13.69	0.01	1.907	8.72	0.19	4.3	95.7	0.0	-0.72	0.74	0.46	—	4.9	0.003	0.61	0.0	0.04	13.61	0.00	1.869	17.71	0.00	4.5	95.5	0.0	-0.44	2.32	0.82	0.63	—	28818	1797	6	23	0	0	13868	logfile
✔	6DJP	7939	2022-07-03	2018-05-25	4.8	5.02	—	4.8	0.011	2.00	0.0	0.08	5.34	0.01	2.368	0.45	0.00	4.6	95.4	0.0	-0.74	0.76	0.65	—	4.8	0.009	1.27	0.0	0.05	9.47	0.01	2.140	24.14	0.00	24.7	74.7	0.6	-4.67	1.25	0.82	0.77	—	7307	1393	8	0	23	0	0	logfile
✔	3J0G	5276	2022-07-03	2011-07-21	4.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	108000	14160	240	0	0	0	0	logfile
✔	7MKQ	23903	2022-07-06	2021-04-26	4.8	4.92	—	4.8	0.004	0.91	1.0	0.05	15.06	0.01	2.010	16.97	1.16	7.0	92.6	0.4	-2.42	0.81	0.79	—	4.8	0.004	0.77	0.0	0.04	14.36	0.00	1.947	19.48	0.03	6.8	93.1	0.1	-0.56	1.01	0.83	0.83	—	32822	4182	7	0	3	0	0	logfile
✘	5UJZ	8561	2022-07-06	2017-01-19	4.8	5.22	—	5.1	0.010	1.26	0.0	0.06	10.76	0.01	2.072	3.64	0.16	7.6	92.3	0.1	-3.77	0.84	0.73	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	33948	2196	15	0	33	0	16401	logfile
✘	7NAV	12249	2022-07-08	2021-01-25	4.8	5.56	5.08	3.1	0.009	1.00	8.0	0.06	17.69	0.01	1.065	43.53	0.00	7.0	93.0	0.0	-2.28	0.89	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	52843	2595	24	1510	38	0	0	logfile
✔	7LLK	23424	2022-07-07	2021-02-04	4.8	7.00	4.88	4.8	0.014	2.12	14.0	0.12	15.77	0.02	2.051	2.46	4.52	12.6	84.8	2.6	-3.42	0.81	0.73	—	4.8	0.007	0.89	0.0	0.05	13.40	0.01	1.729	39.63	0.14	17.9	81.6	0.5	-3.92	0.89	0.84	0.79	—	38982	2397	47	0	108	0	18627	logfile
✔	7U0D	26256	2022-07-03	2022-02-17	4.8	7.51	4.74	4.8	0.019	0.85	1.0	0.05	13.05	0.01	1.880	20.22	0.00	9.7	90.1	0.2	-1.37	0.87	0.71	—	4.8	0.018	0.80	1.0	0.05	13.44	0.01	1.883	25.18	0.11	9.5	90.4	0.1	-1.43	1.10	0.88	0.58	—	8188	1071	6	0	1	0	0	logfile

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