Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7CCR	30340	2022-05-16	2020-06-17	4.9	6.57	—	4.8	0.007	0.96	0.0	0.06	24.75	0.01	1.593	7.21	0.11	4.4	95.6	0.0	-2.64	0.83	0.67	—	4.8	0.006	0.75	0.0	0.04	27.60	0.01	2.024	31.13	0.00	5.4	94.6	0.0	-0.29	1.56	0.88	0.78	—	29722	2202	22	588	0	0	0	logfile
✔	7ELE	31182	2022-05-13	2021-04-09	4.9	8.62	—	7.5	0.007	1.16	0.0	0.06	19.44	0.01	2.210	17.95	8.44	9.1	90.1	0.8	-3.55	0.87	0.71	—	7.4	0.004	0.77	0.0	0.04	16.26	0.00	2.007	33.41	0.10	9.7	90.0	0.3	-1.82	1.36	0.88	0.77	—	10733	1137	2	83	0	0	0	logfile
✔	7KPW	22990	2022-05-12	2020-11-12	4.9	5.04	4.74	4.9	0.009	1.54	4.0	0.10	1.89	0.01	2.279	3.61	0.00	3.9	94.9	1.2	4.09	0.75	0.67	—	4.8	0.005	0.86	0.0	0.04	6.91	0.00	2.059	5.41	0.00	14.6	84.8	0.6	-1.66	2.04	0.83	0.83	—	4313	865	1	0	0	0	0	logfile
✔	7STi	25429	2022-05-14	2021-11-13	4.9	6.34	—	4.3	0.004	0.67	0.0	0.04	13.50	0.00	2.001	25.90	0.20	7.8	92.0	0.2	-1.35	0.89	0.83	—	4.3	0.003	0.65	0.0	0.05	13.46	0.00	2.134	22.71	0.00	8.5	91.3	0.2	-1.38	1.62	0.89	0.83	—	13531	1678	3	0	0	0	0	logfile
✔	7JGG	22326	2022-05-12	2020-07-19	4.88	8.00	—	7.7	0.002	0.46	0.0	0.03	13.22	0.00	1.988	54.49	0.00	3.3	96.5	0.2	1.67	0.66	0.64	—	7.5	0.002	0.46	0.0	0.03	12.61	0.00	1.976	80.83	0.00	4.5	95.5	0.0	1.72	1.70	0.67	0.69	—	4210	506	1	0	0	0	28	logfile
✔	6S1N	10081	2022-05-14	2019-06-19	4.86	4.98	—	4.8	0.009	1.13	2.0	0.06	17.87	0.01	1.929	9.62	0.83	6.3	93.4	0.4	-3.47	0.73	0.53	—	4.8	0.004	0.78	0.0	0.04	16.19	0.01	2.120	20.11	0.00	5.8	94.1	0.0	-1.18	2.78	0.83	0.74	—	19726	2399	11	50	3	0	0	logfile
✘	6VY2	21456	2022-05-14	2020-02-25	4.86	6.05	—	5.2	0.006	0.91	0.0	0.07	14.28	0.00	2.056	18.44	4.96	5.7	93.8	0.5	-2.41	0.82	0.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21426	2442	66	0	180	0	0	logfile
✔	7MDM	23775	2022-05-16	2021-04-05	4.86	5.09	—	5.0	0.005	1.19	0.0	0.07	15.37	0.01	2.261	9.38	0.03	7.9	92.1	0.0	-3.53	0.82	0.77	—	4.9	0.004	0.83	0.0	0.05	14.55	0.01	2.062	25.64	0.00	8.1	91.9	0.0	-1.92	1.82	0.83	0.79	—	31986	4051	12	0	6	0	0	logfile
✘	6HE4	0209	2022-05-13	2018-08-20	4.85	4.88	—	4.8	0.036	3.64	111.0	0.21	18.70	0.03	1.953	1.87	3.66	6.4	89.5	4.1	-2.84	0.55	0.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12684	1602	11	0	10	0	0	logfile
✔	6LHW	0901	2022-05-13	2019-12-10	4.84	5.29	—	4.6	0.008	1.37	1.0	0.05	5.28	0.00	1.530	14.43	0.00	0.0	0.0	0.0	—	0.64	0.56	—	4.6	0.008	1.29	0.0	0.04	6.56	0.00	2.037	44.10	0.00	0.0	0.0	0.0	—	3.20	0.83	0.64	—	7644	0	3	0	1541	0	0	logfile
✔	7NK2	12429	2022-05-16	2021-02-17	4.84	4.93	—	4.8	0.004	0.73	2.0	0.05	13.61	0.01	1.907	8.81	0.32	4.3	95.7	0.0	-0.71	0.61	0.43	—	4.8	0.004	0.70	0.0	0.04	13.73	0.01	1.840	20.24	0.00	7.0	93.0	0.0	-1.05	4.61	0.73	0.67	—	28776	1794	6	23	0	0	13868	logfile
✔	7NJ7	12375	2022-05-16	2021-02-16	4.82	5.23	—	4.8	0.004	0.73	1.0	0.04	13.69	0.01	1.907	8.72	0.19	4.3	95.7	0.0	-0.72	0.74	0.46	—	4.9	0.003	0.61	0.0	0.04	13.61	0.00	1.869	17.71	0.00	4.5	95.5	0.0	-0.44	2.32	0.82	0.63	—	28818	1797	6	23	0	0	13868	logfile
✘	6JH6	9825	2022-05-12	2019-02-17	4.8	5.31	—	4.8	0.006	1.07	1.0	0.05	11.37	0.01	2.197	12.23	0.58	10.8	88.9	0.3	-4.03	0.79	0.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	108924	14244	12	0	8	0	0	logfile
✔	6YRG	10889	2022-05-14	2020-04-20	4.8	6.94	—	7.9	0.009	1.41	18.0	0.08	13.69	0.01	1.270	31.66	0.48	9.4	90.3	0.3	-2.26	0.66	0.32	—	7.8	0.003	0.75	0.0	0.04	12.97	0.00	2.136	16.35	0.00	9.3	90.6	0.1	-1.50	3.42	0.75	0.52	—	21992	2736	4	0	0	0	0	logfile
✔	7LBM	23255	2022-05-15	2021-01-08	4.8	3.22	—	2.3	0.009	1.08	22.0	0.06	16.06	0.01	1.016	31.95	1.26	11.3	88.0	0.7	-3.89	0.57	0.46	—	2.0	0.006	0.91	0.0	0.05	14.84	0.01	1.897	22.65	0.01	8.9	91.0	0.1	-1.34	1.50	0.61	0.60	—	129277	15887	68	128	19	0	0	logfile
✔	6D6V	7821	2022-05-14	2018-04-22	4.8	5.14	—	4.6	0.013	1.70	1.0	0.08	19.43	0.01	1.189	25.73	0.97	15.8	83.5	0.7	-4.28	0.84	0.74	—	4.6	0.004	0.83	0.0	0.05	19.09	0.01	2.070	30.44	0.00	15.1	84.9	0.0	-2.37	1.55	0.86	0.79	—	17317	1535	9	178	158	0	0	logfile
✔	5W9L	8787	2022-05-16	2017-06-23	4.8	4.95	4.82	4.8	0.014	1.71	0.0	0.08	10.52	0.01	1.520	4.79	0.06	4.5	94.7	0.9	0.78	0.75	0.76	—	4.8	0.004	0.76	0.0	0.04	12.81	0.00	2.045	17.01	0.00	6.9	92.9	0.2	-0.83	1.72	0.75	0.79	—	31118	4020	10	0	0	0	0	logfile
✔	6WJD	21691	2022-05-17	2020-04-13	4.8	4.95	—	4.8	0.006	0.95	0.0	0.05	12.04	0.01	2.102	8.46	0.15	10.0	89.7	0.3	-5.16	0.82	0.73	—	4.8	0.003	0.76	0.0	0.04	13.11	0.00	1.925	13.67	0.01	7.4	92.5	0.0	-1.20	1.75	0.84	0.79	—	100757	13414	54	0	12	0	0	logfile
✔	7JGJ	22328	2022-05-13	2020-07-19	4.8	7.06	—	6.5	0.013	2.22	17.0	0.31	17.49	0.01	1.656	7.23	12.68	7.2	91.6	1.2	-2.09	0.88	0.68	—	6.5	0.003	0.76	0.0	0.04	13.54	0.00	2.130	27.09	0.00	7.7	92.2	0.1	-2.19	1.26	0.84	0.48	—	13324	1707	3	0	0	0	0	logfile
✔	6Y9Z	10742	2022-05-14	2020-03-10	4.8	5.22	4.55	6.0	0.012	1.07	3.0	0.11	13.05	0.01	1.631	10.74	0.45	1.9	98.0	0.0	-0.96	0.71	0.75	—	4.9	0.004	0.88	0.0	0.05	13.30	0.01	2.036	21.36	0.00	3.7	96.3	0.0	-0.52	3.66	0.74	0.80	—	18418	2364	13	0	0	0	0	logfile

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