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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6FVX | 4323 | 2024-03-11 | 2018-03-05 | 4.9 | 4.97 | — | 4.9 | 0.036 | 3.46 | 834.0 | 0.21 | 17.38 | 0.03 | 1.000 | 2.06 | 2.81 | 5.4 | 92.9 | 1.7 | -2.42 | 0.52 | 0.59 | — | 4.9 | 0.004 | 0.83 | 0.0 | 0.05 | 14.61 | 0.00 | 1.899 | 20.44 | 0.02 | 4.6 | 95.3 | 0.2 | -0.67 | 1.27 | 0.55 | 0.77 | — | 110471 | 14020 | 53 | 0 | 12 | 0 | 0 | logfile |
✔ | 7STi | 25429 | 2024-03-17 | 2021-11-13 | 4.9 | 6.34 | — | 4.3 | 0.004 | 0.67 | 0.0 | 0.04 | 13.50 | 0.00 | 2.001 | 25.75 | 0.20 | 7.8 | 92.0 | 0.2 | -1.35 | 0.89 | 0.83 | — | 4.3 | 0.004 | 0.64 | 0.0 | 0.04 | 13.50 | 0.00 | 2.091 | 26.35 | 0.00 | 9.4 | 90.4 | 0.1 | -1.26 | 1.59 | 0.89 | 0.84 | — | 13531 | 1678 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J1B | 5391 | 2024-03-12 | 2012-02-06 | 4.9 | 5.01 | — | 4.8 | 0.034 | 3.60 | 502.0 | 0.21 | 17.58 | 0.03 | 2.352 | 1.73 | 4.08 | 6.4 | 90.1 | 3.5 | -3.28 | 0.67 | 0.51 | — | 4.8 | 0.003 | 0.78 | 0.0 | 0.04 | 15.02 | 0.01 | 2.166 | 12.44 | 0.00 | 5.0 | 94.4 | 0.6 | 0.88 | 2.24 | 0.78 | 0.68 | — | 62992 | 8304 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PTL | 13630 | 2024-03-19 | 2021-09-27 | 4.9 | 10.06 | 4.95 | — | 0.005 | 1.01 | 0.0 | 0.06 | 23.55 | 0.01 | 2.401 | 0.61 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.88 | 0.79 | — | — | 0.007 | 0.87 | 0.0 | 0.04 | 27.76 | 0.01 | 1.723 | 81.11 | 0.00 | 0.0 | 0.0 | 0.0 | — | 3.51 | 0.92 | 0.92 | — | 23080 | 0 | 1 | 720 | 0 | 0 | 7743 | logfile |
✔ | 6UPK | 20840 | 2024-03-16 | 2019-10-17 | 4.9 | 7.69 | 6.08 | 7.1 | 0.005 | 0.94 | 0.0 | 0.05 | 20.42 | 0.01 | 1.570 | 20.39 | 0.00 | 7.2 | 92.8 | 0.0 | -3.94 | 0.89 | 0.77 | — | 7.0 | 0.003 | 0.66 | 0.0 | 0.04 | 22.43 | 0.00 | 1.939 | 25.70 | 0.00 | 5.4 | 94.6 | 0.0 | -1.54 | 2.95 | 0.90 | 0.83 | — | 13861 | 1314 | 10 | 144 | 54 | 0 | 0 | logfile |
✔ | 6ZQF | 11362 | 2024-03-18 | 2020-07-09 | 4.9 | 5.01 | — | 4.8 | 0.009 | 1.42 | 25.0 | 0.08 | 22.52 | 0.01 | 0.887 | 15.97 | 0.00 | 6.2 | 92.3 | 1.5 | -2.85 | 0.69 | 0.48 | — | 4.8 | 0.005 | 0.88 | 0.0 | 0.05 | 22.83 | 0.00 | 1.964 | 18.98 | 0.00 | 12.3 | 87.5 | 0.3 | -2.18 | 1.48 | 0.81 | 0.72 | — | 89582 | 11884 | 43 | 1447 | 1 | 0 | 0 | logfile |
✔ | 7Z8L | 14556 | 2024-03-17 | 2022-03-17 | 4.9 | 4.50 | 4.38 | 4.0 | 0.012 | 1.30 | 0.0 | 0.09 | 9.68 | 0.01 | 2.296 | 0.29 | 0.00 | 1.2 | 98.8 | 0.0 | 1.37 | 0.76 | 0.77 | — | 4.0 | 0.002 | 0.54 | 0.0 | 0.04 | 6.61 | 0.00 | 1.853 | 3.49 | 0.00 | 4.5 | 95.5 | 0.0 | 2.20 | 0.65 | 0.84 | 0.80 | — | 16513 | 3311 | 3 | 0 | 5 | 0 | 0 | logfile |
✔ | 7o3W | 12710 | 2024-03-18 | 2021-04-03 | 4.9 | 6.81 | 5.80 | 7.1 | 0.017 | 1.84 | 0.0 | 0.11 | 18.08 | 0.01 | 0.360 | 24.19 | 0.30 | 3.5 | 96.4 | 0.2 | 1.74 | 0.66 | 0.54 | — | 7.1 | 0.004 | 0.91 | 0.0 | 0.04 | 15.60 | 0.00 | 2.000 | 25.15 | 0.03 | 1.7 | 98.2 | 0.1 | 1.85 | 2.38 | 0.75 | 0.81 | — | 138390 | 17976 | 98 | 0 | 14 | 0 | 0 | logfile |
✔ | 7K9L | 22754 | 2024-03-15 | 2020-09-29 | 4.9 | 4.39 | — | 4.7 | 0.007 | 1.19 | 0.0 | 0.07 | 15.28 | 0.01 | 2.254 | 9.45 | 3.96 | 3.5 | 96.5 | 0.0 | -1.98 | 0.67 | 0.78 | — | 4.6 | 0.003 | 0.69 | 0.0 | 0.04 | 14.10 | 0.00 | 2.273 | 14.29 | 0.00 | 4.1 | 95.9 | 0.0 | 0.88 | 0.92 | 0.68 | 0.78 | — | 10472 | 1372 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8SAL | 40273 | 2024-03-17 | 2023-04-01 | 4.9 | 5.54 | 4.74 | 5.0 | 0.005 | 0.89 | 0.0 | 0.05 | 13.67 | 0.01 | 2.065 | 4.56 | 0.00 | 8.4 | 91.4 | 0.1 | -2.31 | 0.76 | 0.70 | — | 4.9 | 0.006 | 0.97 | 0.0 | 0.05 | 13.56 | 0.01 | 1.992 | 37.35 | 0.00 | 11.1 | 88.7 | 0.2 | -2.29 | 2.71 | 0.80 | 0.79 | — | 18435 | 2343 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J6F | 5896 | 2024-03-12 | 2014-02-19 | 4.9 | 4.97 | — | 4.9 | 0.021 | 2.64 | 64.0 | 0.14 | 14.01 | 0.01 | 2.069 | 5.57 | 0.14 | 3.1 | 96.3 | 0.6 | -1.05 | 0.62 | 0.66 | — | 4.9 | 0.003 | 0.74 | 0.0 | 0.05 | 14.46 | 0.01 | 1.824 | 20.72 | 0.08 | 2.9 | 97.1 | 0.0 | 0.29 | 2.80 | 0.69 | 0.81 | — | 60903 | 7686 | 45 | 9 | 18 | 36 | 0 | logfile |
✔ | 6PoM | 20416 | 2024-03-10 | 2019-07-04 | 4.9 | 5.01 | — | 5.0 | 0.003 | 0.64 | 0.0 | 0.03 | 25.63 | 0.00 | 2.075 | 3.10 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.61 | 0.64 | — | 5.0 | 0.010 | 1.23 | 0.0 | 0.06 | 27.09 | 0.01 | 1.945 | 59.78 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.74 | 0.74 | 0.79 | — | 4937 | 0 | 2 | 230 | 0 | 0 | 0 | logfile |
✔ | 7ELE | 31182 | 2024-03-15 | 2021-04-09 | 4.9 | 8.62 | — | 7.5 | 0.007 | 1.16 | 0.0 | 0.06 | 21.73 | 0.01 | 2.210 | 17.86 | 8.44 | 9.1 | 90.1 | 0.8 | -3.55 | 0.87 | 0.71 | — | 7.5 | 0.003 | 0.74 | 0.0 | 0.04 | 18.90 | 0.00 | 2.058 | 28.35 | 0.00 | 9.5 | 90.3 | 0.2 | -1.83 | 1.67 | 0.88 | 0.77 | — | 10733 | 1137 | 2 | 83 | 0 | 0 | 0 | logfile |
✘ | 4CE4 | 2490 | 2024-03-13 | 2013-11-08 | 4.9 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65473 | 3572 | 40 | 1437 | 984 | 0 | 0 | logfile |
✘ | 6UXB | 20932 | 2024-03-15 | 2019-11-07 | 4.9 | 5.50 | — | 6.0 | 0.005 | 0.77 | 0.0 | 0.06 | 4.56 | 0.00 | 2.627 | 0.00 | 0.00 | 3.8 | 96.2 | 0.0 | -2.56 | 0.74 | 0.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10344 | 2104 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 5U8T | 8519 | 2024-03-24 | 2016-12-15 | 4.9 | 5.42 | — | 5.0 | 0.008 | 1.57 | 0.0 | 0.06 | 16.11 | 0.01 | 1.737 | 40.31 | 8.25 | 10.1 | 88.9 | 1.0 | -4.31 | 0.87 | 0.80 | — | 4.9 | 0.004 | 0.88 | 1.0 | 0.05 | 14.21 | 0.00 | 2.055 | 27.08 | 0.07 | 9.4 | 89.6 | 1.0 | -1.46 | 0.88 | 0.87 | 0.82 | — | 40788 | 5089 | 15 | 14 | 3 | 0 | 0 | logfile |
✔ | 6R23 | 4708 | 2024-03-10 | 2019-03-15 | 4.9 | 4.57 | — | 4.6 | 0.006 | 1.07 | 0.0 | 0.05 | 16.56 | 0.01 | 2.332 | 7.52 | 0.00 | 7.9 | 92.1 | 0.0 | -4.61 | 0.60 | 0.75 | — | 4.6 | 0.003 | 0.65 | 0.0 | 0.03 | 16.46 | 0.00 | 2.358 | 8.83 | 0.00 | 6.7 | 93.3 | 0.0 | 0.64 | 3.59 | 0.60 | 0.73 | — | 1518 | 182 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Q9i | 13870 | 2024-03-21 | 2021-11-12 | 4.9 | 5.59 | — | 5.3 | 0.004 | 0.57 | 0.0 | 0.04 | 11.10 | 0.00 | 2.216 | 4.73 | 0.80 | 3.4 | 96.5 | 0.0 | -0.34 | 0.76 | 0.63 | — | 5.3 | 0.003 | 0.68 | 0.0 | 0.05 | 11.64 | 0.00 | 2.027 | 18.16 | 0.00 | 4.4 | 95.6 | 0.0 | -0.79 | 1.97 | 0.80 | 0.72 | — | 30966 | 3881 | 24 | 0 | 53 | 0 | 0 | logfile |
✔ | 8HiA | 34813 | 2024-03-11 | 2022-11-19 | 4.9 | 4.49 | 2.13 | 9.6 | 0.001 | 0.36 | 0.0 | 0.05 | 15.83 | 0.00 | 2.251 | 1.11 | 2.86 | 12.1 | 87.6 | 0.2 | -4.39 | 0.47 | 0.07 | — | 9.4 | 0.009 | 0.98 | 0.0 | 0.05 | 15.73 | 0.01 | 2.082 | 32.36 | 4.76 | 19.0 | 81.0 | 0.0 | -5.53 | 12.59 | 0.68 | 0.24 | — | 7200 | 460 | 20 | 0 | 0 | 0 | 3660 | logfile |
✔ | 8EXQ | 28659 | 2024-03-14 | 2022-10-25 | 4.9 | 5.40 | 5.55 | 6.0 | 0.020 | 1.74 | 0.0 | 0.10 | 10.28 | 0.01 | 2.002 | 1.81 | 0.00 | 2.5 | 97.3 | 0.2 | 0.34 | 0.52 | 0.45 | — | 5.9 | 0.003 | 0.72 | 0.0 | 0.04 | 12.63 | 0.00 | 2.230 | 15.59 | 0.00 | 4.5 | 95.3 | 0.2 | -0.38 | 2.51 | 0.57 | 0.62 | — | 9304 | 1108 | 4 | 0 | 2 | 0 | 0 | logfile |