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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6AZ1 | 7024 | 2022-07-05 | 2017-09-09 | 2.7 | 3.09 | — | 3.1 | 0.011 | 1.18 | 0.0 | 0.06 | 17.31 | 0.01 | 1.149 | 5.37 | 1.36 | 6.0 | 93.9 | 0.1 | -3.90 | 0.53 | 0.81 | 4.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 80594 | 4810 | 66 | 2001 | 30 | 262 | 0 | logfile |
✘ | 5TAV | 8386 | 2022-07-05 | 2016-09-10 | 4.8 | 4.96 | 5.58 | 4.7 | 0.004 | 0.89 | 4.0 | 0.05 | 9.80 | 0.01 | 1.373 | 4.82 | 0.39 | 9.7 | 90.1 | 0.2 | -4.80 | 0.77 | 0.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 121452 | 13500 | 12 | 0 | 3716 | 0 | 0 | logfile |
✘ | 6S7o | 10110 | 2022-07-04 | 2019-07-05 | 3.5 | 3.68 | — | 3.7 | 0.007 | 0.92 | 0.0 | 0.06 | 12.96 | 0.00 | 1.353 | 15.82 | 1.47 | 5.7 | 94.1 | 0.2 | -1.66 | 0.72 | 0.85 | 2.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18118 | 2197 | 14 | 0 | 38 | 0 | 0 | logfile |
✘ | 6J6H | 0687 | 2022-07-05 | 2019-01-15 | 3.6 | 3.74 | — | 3.6 | 0.008 | 0.97 | 2.0 | 0.06 | 14.36 | 0.01 | 1.463 | 16.43 | 2.68 | 4.4 | 95.1 | 0.5 | -3.20 | 0.62 | 0.67 | 1.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 76847 | 8644 | 47 | 551 | 14 | 0 | 0 | logfile |
✘ | 6UE7 | 20749 | 2022-07-03 | 2019-09-20 | 2.9 | 3.95 | — | 3.8 | 0.007 | 1.03 | 0.0 | 0.06 | 12.81 | 0.01 | 2.051 | 2.95 | 0.50 | 10.2 | 89.8 | 0.0 | -3.16 | 0.81 | 0.81 | 3.11 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11701 | 1571 | 11 | 0 | 16 | 0 | 0 | logfile |
✘ | 6JHN | 9826 | 2022-07-03 | 2019-02-18 | 4.5 | 7.49 | — | 4.4 | 0.010 | 1.23 | 0.0 | 0.06 | 16.52 | 0.01 | 2.114 | 19.30 | 1.44 | 13.9 | 85.8 | 0.3 | -4.27 | 0.85 | 0.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 109488 | 14332 | 12 | 0 | 12 | 0 | 0 | logfile |
✘ | 6DQN | 7981 | 2022-07-07 | 2018-06-11 | 3.33 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 138876 | 8744 | 8 | 0 | 8 | 0 | 69396 | logfile |
✘ | 6BPZ | 7128 | 2022-07-05 | 2017-11-27 | 3.8 | 3.99 | — | 3.8 | 0.010 | 1.55 | 0.0 | 0.08 | 11.48 | 0.01 | 2.260 | 4.11 | 0.14 | 7.9 | 91.8 | 0.2 | -4.66 | 0.55 | 0.66 | 1.62 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21453 | 2523 | 3 | 0 | 177 | 0 | 0 | logfile |
✘ | 5YZG | 6864 | 2022-07-07 | 2017-12-14 | 4.1 | 4.23 | 4.20 | 4.1 | 0.016 | 1.80 | 42.0 | 0.10 | 16.13 | 0.01 | 1.129 | 26.81 | 8.31 | 4.8 | 93.5 | 1.7 | -1.79 | 0.57 | 0.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 103906 | 15211 | 63 | 408 | 19 | 0 | 0 | logfile |
✘ | 5XJC | 6721 | 2022-07-04 | 2017-04-30 | 3.6 | 3.69 | 3.82 | 3.6 | 0.013 | 1.58 | 25.0 | 0.09 | 16.69 | 0.01 | 1.113 | 24.45 | 8.13 | 4.9 | 93.3 | 1.8 | -1.84 | 0.46 | 0.53 | 1.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 116421 | 14184 | 59 | 405 | 24 | 0 | 0 | logfile |
✘ | 5U4i | 8505 | 2022-07-09 | 2016-12-04 | 3.5 | 3.09 | 3.83 | 3.7 | 0.007 | 1.16 | 41.0 | 0.10 | 18.48 | 0.01 | 1.245 | 8.63 | 8.19 | 6.4 | 92.7 | 0.8 | -1.32 | 0.60 | 0.74 | 0.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 149495 | 6159 | 61 | 4715 | 125 | 0 | 0 | logfile |
✘ | 6J6N | 0691 | 2022-07-05 | 2019-01-15 | 3.86 | 3.99 | — | 3.8 | 0.008 | 1.02 | 1.0 | 0.06 | 14.52 | 0.01 | 1.463 | 15.68 | 2.51 | 5.1 | 94.2 | 0.8 | -3.41 | 0.60 | 0.63 | 1.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 78937 | 8982 | 47 | 544 | 14 | 0 | 0 | logfile |
✘ | 6KAC | 9955 | 2022-07-05 | 2019-06-21 | 2.7 | 2.84 | — | 2.8 | 0.011 | 1.46 | 0.0 | 0.06 | 14.99 | 0.02 | 1.198 | 8.43 | 0.64 | 4.9 | 95.0 | 0.1 | -4.64 | 0.72 | 0.84 | 4.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 77947 | 7858 | 126 | 0 | 318 | 595 | 0 | logfile |
✘ | 5Z58 | 6891 | 2022-07-06 | 2018-01-17 | 4.9 | 5.11 | — | 4.8 | 0.011 | 1.47 | 31.0 | 0.09 | 14.16 | 0.01 | 1.413 | 28.33 | 4.95 | 6.4 | 92.4 | 1.2 | -2.65 | 0.58 | 0.55 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 94673 | 12915 | 51 | 390 | 12 | 0 | 0 | logfile |
✘ | 6FVX | 4323 | 2022-07-03 | 2018-03-05 | 4.9 | 4.97 | — | 4.9 | 0.036 | 3.46 | 834.0 | 0.21 | 17.27 | 0.03 | 1.000 | 2.07 | 2.81 | 5.4 | 92.9 | 1.7 | -2.42 | 0.52 | 0.59 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 110471 | 14020 | 53 | 0 | 12 | 0 | 0 | logfile |
✘ | 5TAT | 8384 | 2022-07-05 | 2016-09-10 | 4.8 | 5.01 | 5.79 | 4.8 | 0.004 | 0.87 | 0.0 | 0.05 | 9.77 | 0.01 | 1.373 | 4.83 | 0.35 | 9.4 | 90.5 | 0.1 | -4.89 | 0.78 | 0.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 121452 | 13500 | 12 | 0 | 3716 | 0 | 0 | logfile |
✘ | 6PUW | 20483 | 2022-07-03 | 2019-07-18 | 2.9 | 3.21 | 2.93 | 3.1 | 0.005 | 0.57 | 0.0 | 0.04 | 19.84 | 0.00 | 0.000 | 7.79 | 0.20 | 2.1 | 97.9 | 0.0 | -2.24 | 0.74 | 0.90 | 4.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 11116 | 1170 | 28 | 72 | 10 | 312 | 0 | logfile |
✘ | 5TAY | 8389 | 2022-07-05 | 2016-09-10 | 4.6 | 4.71 | 4.77 | 4.5 | 0.004 | 0.86 | 4.0 | 0.05 | 9.86 | 0.01 | 1.374 | 4.95 | 0.46 | 10.4 | 89.4 | 0.2 | -4.90 | 0.75 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 121276 | 13500 | 12 | 0 | 3712 | 0 | 0 | logfile |
✘ | 6G90 | 4364 | 2022-07-04 | 2018-04-10 | 4.0 | 4.12 | — | 3.9 | 0.009 | 1.31 | 2.0 | 0.07 | 12.58 | 0.01 | 1.409 | 19.11 | 0.57 | 7.8 | 91.4 | 0.8 | -3.55 | 0.51 | 0.41 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65050 | 6796 | 43 | 474 | 223 | 0 | 0 | logfile |
✘ | 6RFQ | 4872 | 2022-07-03 | 2019-04-16 | 3.3 | 3.42 | — | 3.4 | 0.013 | 1.56 | 3.0 | 0.95 | 11.49 | 0.01 | 1.159 | 9.33 | 0.17 | 7.0 | 92.8 | 0.1 | -4.08 | 0.69 | 0.79 | 1.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62052 | 7637 | 59 | 0 | 36 | 0 | 0 | logfile |