Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Y1T	33572	2023-04-20	2022-06-08	3.24	3.67	3.31	3.5	0.003	0.59	0.0	0.09	13.77	0.00	1.998	8.09	0.00	4.1	95.9	0.0	-0.76	0.73	0.75	1.76	3.5	0.004	0.68	0.0	0.05	15.30	0.00	2.102	10.99	0.49	5.4	94.6	0.0	-0.60	0.59	0.74	0.79	2.63	8112	1030	10	0	24	0	0	logfile
✔	7WLY	32594	2023-04-28	2022-01-14	3.4	3.69	—	3.5	0.007	0.86	0.0	0.06	12.28	0.01	2.207	9.99	0.97	7.1	92.9	0.0	-2.55	0.80	0.79	1.99	3.5	0.003	0.62	0.0	0.04	14.15	0.00	2.118	9.56	0.32	4.4	95.6	0.0	-0.94	0.57	0.81	0.81	1.79	28550	3627	12	0	31	0	0	logfile
✔	7PW7	13677	2023-04-23	2021-10-06	3.59	3.77	—	3.7	0.003	0.63	0.0	0.17	13.25	0.00	2.020	5.39	0.00	2.9	97.1	0.0	1.95	0.76	0.76	0.92	3.6	0.003	0.53	0.0	0.04	14.58	0.00	1.905	5.91	0.21	3.8	96.2	0.0	1.86	0.94	0.78	0.79	1.11	16227	2056	4	0	199	0	0	logfile
✔	7T3P	25667	2023-04-24	2021-12-08	3.2	3.52	3.32	3.5	0.004	0.54	0.0	0.04	13.90	0.00	2.019	8.33	0.00	4.1	95.9	0.0	1.75	0.67	0.70	2.04	3.5	0.004	0.65	0.0	0.04	16.16	0.00	2.089	11.93	0.34	3.8	96.2	0.0	1.02	1.82	0.70	0.76	2.15	66992	8188	8	0	88	0	0	logfile
✔	7T3R	25669	2023-04-26	2021-12-08	3.4	3.68	3.48	3.6	0.004	0.54	0.0	0.04	13.70	0.00	2.035	8.37	0.00	4.7	95.3	0.0	1.52	0.71	0.78	2.05	3.6	0.004	0.65	0.0	0.04	16.69	0.00	2.093	11.56	0.30	4.4	95.6	0.0	0.90	1.38	0.75	0.86	1.84	68780	8444	8	0	88	0	0	logfile
✘	6J6G	0686	2023-04-29	2019-01-15	3.2	3.37	—	3.2	0.007	0.94	0.0	0.09	14.14	0.01	1.903	15.53	3.03	4.6	94.9	0.5	-3.38	0.67	0.71	2.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	79042	8981	47	550	14	0	0	logfile
✔	7USX	26742	2023-04-23	2022-04-26	3.09	3.45	3.15	3.4	0.004	0.86	0.0	0.04	16.31	0.01	2.223	9.94	0.14	3.7	96.3	0.0	1.65	0.62	0.78	1.63	3.4	0.003	0.52	0.0	0.04	16.37	0.00	2.183	6.95	0.14	3.5	96.5	0.0	1.86	0.30	0.56	0.78	1.38	14220	1670	12	0	54	0	0	logfile
✔	7EDH	31071	2023-04-26	2021-03-16	3.6	4.18	—	4.0	0.004	0.67	0.0	0.05	13.66	0.00	2.189	7.03	0.16	6.4	93.3	0.3	-1.26	0.80	0.78	2.26	4.0	0.002	0.58	0.0	0.04	15.28	0.00	2.170	6.90	0.20	6.0	93.7	0.3	-0.88	0.36	0.81	0.78	2.11	23276	2846	36	0	77	0	0	logfile
✔	6YG8	10799	2023-04-27	2020-03-27	3.0	3.39	—	3.2	0.005	0.60	0.0	0.05	11.98	0.00	2.166	6.88	0.00	4.7	95.3	0.0	-3.49	0.83	0.86	3.96	3.3	0.004	0.61	0.0	0.05	14.33	0.00	2.167	7.56	1.77	4.2	95.8	0.0	-0.38	1.12	0.84	0.88	3.42	24330	3132	5	0	0	0	0	logfile
✔	8DG9	27419	2023-04-23	2022-06-23	2.24	2.40	2.33	2.5	0.004	0.63	0.0	0.05	16.95	0.00	2.116	5.15	0.91	2.7	97.3	0.0	-0.16	0.69	0.83	4.59	2.5	0.003	0.84	0.0	0.05	16.88	0.00	2.141	5.44	1.77	2.9	97.1	0.0	0.26	1.11	0.68	0.84	4.52	15450	2007	12	0	6	0	0	logfile
✔	7LiK	23381	2023-04-27	2021-01-27	2.91	3.15	—	3.2	0.007	0.93	0.0	0.06	14.31	0.01	2.239	2.52	3.02	6.8	93.2	0.0	-1.80	0.79	0.86	3.33	3.2	0.005	0.77	0.0	0.05	16.30	0.01	2.318	1.66	2.51	7.1	92.9	0.0	-1.17	0.25	0.80	0.88	2.68	130800	15900	60	0	60	0	0	logfile
✔	7EAZ	31047	2023-04-27	2021-03-08	3.5	4.16	—	4.0	0.004	0.67	0.0	0.05	13.84	0.00	2.146	8.23	0.00	5.3	94.7	0.0	-1.15	0.79	0.77	2.17	4.0	0.003	0.61	0.0	0.04	15.21	0.00	2.165	7.66	0.11	5.2	94.8	0.0	-0.71	0.31	0.80	0.79	1.93	24956	3051	38	0	82	0	0	logfile
✔	7W94	32360	2023-04-27	2021-12-09	3.4	3.02	—	3.6	0.003	0.67	0.0	0.05	13.57	0.01	2.288	3.37	0.14	3.4	96.6	0.0	-4.24	0.78	0.74	1.49	3.5	0.005	0.76	0.0	0.05	16.33	0.00	2.055	14.42	0.57	6.9	93.1	0.0	-1.66	0.73	0.80	0.79	1.58	25082	3206	3	0	0	0	0	logfile
✔	7EB5	31052	2023-04-27	2021-03-08	3.4	4.18	—	4.0	0.004	0.64	0.0	0.05	13.90	0.00	2.162	7.58	0.11	5.5	94.4	0.1	-1.06	0.79	0.77	1.94	4.0	0.005	0.65	0.0	0.05	15.27	0.00	2.133	9.23	0.15	7.5	92.4	0.1	-1.14	1.15	0.80	0.79	1.90	24902	3058	33	0	74	0	0	logfile
✔	6NYN	0547	2023-04-26	2019-02-11	3.5	4.40	—	4.1	0.006	1.01	0.0	0.06	10.55	0.01	2.259	7.62	0.97	16.7	83.3	0.0	-5.19	0.87	0.77	2.69	4.1	0.004	0.71	0.0	0.05	12.57	0.00	2.163	16.36	0.20	17.0	83.0	0.0	-4.58	0.51	0.88	0.79	2.29	68664	9000	12	0	0	0	0	logfile
✔	7S6i	24876	2023-04-27	2021-09-14	3.2	3.55	3.30	3.5	0.022	1.73	0.0	0.12	10.14	0.01	2.394	0.44	0.10	3.2	96.8	0.0	0.33	0.81	0.85	4.14	3.5	0.003	0.64	0.0	0.04	13.58	0.00	2.185	4.42	0.17	3.3	96.7	0.1	-0.06	1.34	0.82	0.88	3.62	26772	3309	24	0	66	0	0	logfile
✔	7T6o	25721	2023-04-25	2021-12-14	2.6	2.80	—	2.9	0.004	0.79	0.0	0.05	14.06	0.01	2.302	2.54	0.00	1.3	98.7	0.0	-1.56	0.67	0.84	3.82	2.8	0.002	0.51	0.0	0.04	16.16	0.00	2.191	6.19	1.19	1.2	98.8	0.0	1.76	0.90	0.68	0.87	3.34	19412	2424	4	0	0	0	0	logfile
✔	7V7U	31782	2023-04-27	2021-08-21	3.0	3.56	—	3.4	0.005	0.64	0.0	0.05	13.78	0.00	2.194	7.34	0.00	4.8	95.1	0.1	0.24	0.81	0.84	2.19	3.4	0.004	0.62	0.0	0.05	15.32	0.00	2.161	6.96	1.52	4.3	95.7	0.1	0.20	0.41	0.81	0.85	2.13	25283	3088	41	0	83	0	0	logfile
✘	6J6Q	0692	2023-04-29	2019-01-15	3.7	3.85	—	3.7	0.008	0.99	0.0	0.09	14.74	0.01	1.463	18.21	2.93	4.9	94.2	0.9	-3.65	0.62	0.66	1.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	80535	9167	50	549	15	0	0	logfile
✔	7B6E	12053	2023-04-19	2020-12-07	4.5	2.79	—	5.1	0.005	1.03	0.0	0.05	15.04	0.01	2.129	36.05	0.00	10.9	89.1	0.0	-3.88	0.62	0.66	—	2.4	0.004	0.99	0.0	0.05	14.87	0.00	2.111	27.61	0.00	11.3	88.7	0.0	-1.65	0.83	0.61	0.67	—	2205	269	1	0	0	0	0	logfile

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