Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	4V19	2787	2022-12-14	2014-09-25	3.4	3.44	—	3.4	0.009	1.23	0.0	0.05	20.02	0.01	1.860	9.79	6.97	3.8	96.1	0.1	-2.85	0.76	0.88	2.04	3.4	0.004	0.67	0.0	0.04	19.00	0.01	1.117	8.81	0.45	3.9	96.1	0.1	-0.23	2.80	0.76	0.88	2.11	69409	4361	42	1583	171	204	0	logfile
✔	4V1A	2787	2022-12-16	2014-09-25	3.4	3.43	—	3.4	0.009	1.29	0.0	0.05	13.81	0.01	2.067	12.20	6.03	4.6	95.3	0.1	-2.62	0.37	0.78	1.69	3.4	0.003	0.69	0.0	0.04	16.83	0.00	2.076	10.41	0.15	4.3	95.6	0.1	0.54	1.91	0.38	0.78	1.67	31917	3843	24	0	94	0	0	logfile
✘	6ioL	9696	2022-12-22	2018-10-30	3.76	3.62	3.77	3.8	0.005	0.97	0.0	0.06	10.77	0.01	2.201	5.12	0.33	5.6	94.4	0.0	-4.06	0.63	0.80	2.11	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	49077	6450	12	0	0	0	0	logfile
✔	6N38	9341	2022-12-15	2018-11-14	3.7	3.82	—	3.8	0.013	1.29	0.0	0.08	10.00	0.01	2.216	1.46	0.31	2.7	97.2	0.1	0.10	0.78	0.79	2.54	3.7	0.003	0.65	0.0	0.04	14.34	0.00	2.182	6.61	0.16	2.3	97.7	0.0	0.92	0.83	0.80	0.82	2.17	24456	3098	11	0	39	0	0	logfile
✔	6PSY	20468	2022-12-12	2019-07-14	2.8	2.96	—	3.0	0.007	1.08	0.0	0.06	11.32	0.01	2.256	8.88	0.40	8.3	91.7	0.0	-4.87	0.59	0.74	3.67	3.0	0.004	0.68	0.0	0.04	16.61	0.00	2.184	14.29	2.85	7.4	92.6	0.0	-1.24	1.26	0.64	0.80	3.07	11540	1429	4	0	4	0	0	logfile
✔	6SST	10305	2022-12-11	2019-09-09	3.4	3.46	—	3.4	0.009	0.94	0.0	0.07	16.79	0.00	2.430	5.73	2.13	10.1	89.9	0.0	-4.47	0.56	0.80	6.33	3.4	0.005	0.69	0.0	0.05	15.22	0.00	2.342	10.76	0.21	14.6	85.4	0.0	-4.82	0.49	0.59	0.84	5.27	4900	730	10	0	0	0	0	logfile
✔	6KS8	0760	2022-12-12	2019-08-23	4.69	4.76	—	4.6	0.001	0.39	0.0	0.04	7.12	0.00	2.228	5.95	0.01	4.4	95.5	0.0	-3.61	0.77	0.67	—	4.6	0.004	0.80	1.0	0.05	11.72	0.00	2.042	24.03	0.00	4.6	95.3	0.0	-0.71	1.94	0.82	0.74	—	61943	8120	16	0	0	0	0	logfile
✔	6DJo	7938	2022-12-12	2018-05-25	3.6	3.75	—	3.7	0.009	0.94	0.0	0.06	10.85	0.01	2.053	6.86	0.96	4.9	95.1	0.0	-4.76	0.69	0.84	3.42	3.6	0.005	0.70	0.0	0.05	15.01	0.00	1.897	9.05	0.56	5.9	94.1	0.0	-1.71	2.19	0.70	0.85	2.85	11748	1488	8	0	8	0	0	logfile
✔	6iG9	9664	2022-12-13	2018-09-25	4.6	5.44	4.27	4.3	0.007	1.07	0.0	0.05	9.51	0.01	2.299	9.69	0.73	10.2	89.7	0.2	-3.99	0.69	0.65	—	4.2	0.002	0.65	0.0	0.04	4.80	0.00	2.253	1.55	0.00	8.0	92.0	0.0	1.51	1.56	0.84	0.79	—	17122	3386	1	0	0	0	0	logfile
✔	6MHW	9120	2022-12-18	2018-09-18	4.0	4.10	3.97	4.0	0.004	0.62	0.0	0.13	7.02	0.00	1.933	7.04	0.00	3.4	96.6	0.0	-2.09	0.79	0.77	—	4.0	0.003	0.67	0.0	0.12	12.85	0.00	1.905	10.25	0.25	5.4	94.6	0.0	1.46	1.49	0.79	0.79	—	34414	2452	4	0	0	0	16514	logfile
✔	6DJM	7936	2022-12-12	2018-05-25	3.1	3.26	—	3.2	0.010	1.01	0.0	0.06	10.99	0.01	2.069	3.69	0.00	4.2	95.8	0.0	-4.16	0.67	0.84	3.65	3.2	0.003	0.57	0.0	0.04	15.21	0.00	1.964	7.54	0.16	4.1	95.9	0.0	-0.33	1.26	0.68	0.86	2.94	11768	1488	12	0	8	4	0	logfile
✔	5NJ3	3654	2022-12-12	2017-03-28	3.78	3.89	—	3.8	0.011	1.16	0.0	0.06	10.49	0.01	2.183	8.79	0.68	6.0	93.9	0.1	-3.80	0.72	0.79	2.92	3.8	0.005	0.74	0.0	0.05	13.79	0.00	2.103	11.74	0.34	5.3	94.6	0.1	0.42	1.26	0.72	0.79	2.26	12662	1958	8	0	4	0	0	logfile
✔	6K0B	9900	2022-12-15	2019-05-05	4.3	4.49	—	4.2	0.003	0.78	0.0	0.04	14.21	0.01	2.011	5.73	0.66	6.1	93.9	0.0	-3.67	0.84	0.69	—	4.2	0.003	0.67	0.0	0.04	15.17	0.00	2.093	21.43	0.00	7.3	92.6	0.1	-0.56	1.78	0.88	0.79	—	25908	1376	16	682	2	0	0	logfile
✔	5A2Q	3019	2022-12-15	2015-05-21	3.9	4.01	—	3.9	0.008	1.23	0.0	0.05	19.81	0.01	1.830	13.41	12.93	4.3	95.5	0.2	-3.44	0.89	0.88	1.18	3.9	0.004	0.72	0.0	0.04	18.72	0.00	1.818	15.77	0.82	5.1	94.8	0.1	-0.34	1.60	0.86	0.82	1.23	80749	4931	45	1922	115	144	0	logfile
✔	6V3E	21034	2022-12-22	2019-11-25	4.4	4.86	—	3.6	0.002	0.45	0.0	0.03	14.34	0.02	2.039	11.31	0.05	2.4	97.6	0.0	-1.40	0.88	0.74	—	3.6	0.008	0.97	0.0	0.05	17.24	0.01	1.330	44.05	0.00	6.6	93.3	0.1	-1.49	1.77	0.90	0.79	—	50850	2311	20	1528	0	0	0	logfile
✔	6N3A	9349	2022-12-11	2018-11-14	3.3	3.44	—	3.6	0.008	1.14	0.0	0.05	14.53	0.01	2.469	17.25	0.00	8.9	91.1	0.0	-5.23	0.49	0.76	3.75	3.6	0.005	0.96	0.0	0.04	19.28	0.00	2.210	17.25	2.05	10.2	89.8	0.0	-5.15	1.99	0.51	0.79	2.70	4310	600	20	0	0	0	0	logfile
✔	6J0F	9763	2022-12-14	2018-12-24	3.8	3.95	—	3.9	0.007	1.04	0.0	0.06	15.76	0.01	2.265	5.30	2.19	4.9	95.1	0.0	-4.54	0.64	0.86	2.41	3.9	0.005	0.80	0.0	0.05	17.01	0.00	2.141	12.00	0.78	7.5	92.5	0.0	-1.35	2.05	0.64	0.86	2.05	19314	2472	12	0	0	0	0	logfile
✔	6GJZ	0012	2022-12-12	2018-05-17	4.06	4.32	3.49	4.1	0.011	1.11	0.0	0.05	10.30	0.01	2.008	14.06	0.00	10.8	88.9	0.3	-4.09	0.66	0.79	—	4.1	0.004	0.79	0.0	0.04	11.98	0.00	1.992	29.46	0.00	11.3	88.6	0.1	-0.92	1.53	0.67	0.80	—	10503	682	4	28	2	0	4402	logfile
✘	6EXV	3981	2022-12-18	2017-11-09	3.6	3.52	3.44	3.5	0.008	1.10	0.0	0.06	12.80	0.01	2.022	5.74	0.29	8.9	91.1	0.1	-4.63	0.68	0.74	3.30	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32717	3905	22	75	9	0	0	logfile
✔	6UFR	20759	2022-12-11	2019-09-24	2.5	2.80	—	2.8	0.012	0.96	0.0	0.07	13.71	0.01	2.209	5.48	0.00	6.6	93.4	0.0	-1.99	0.50	0.87	5.55	2.8	0.004	0.63	0.0	0.06	17.00	0.00	2.402	2.46	2.95	4.8	95.2	0.0	-0.87	0.98	0.51	0.89	5.06	4420	630	20	0	0	90	0	logfile

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