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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 4V19 | 2787 | 2022-12-14 | 2014-09-25 | 3.4 | 3.44 | — | 3.4 | 0.009 | 1.23 | 0.0 | 0.05 | 20.02 | 0.01 | 1.860 | 9.79 | 6.97 | 3.8 | 96.1 | 0.1 | -2.85 | 0.76 | 0.88 | 2.04 | 3.4 | 0.004 | 0.67 | 0.0 | 0.04 | 19.00 | 0.01 | 1.117 | 8.81 | 0.45 | 3.9 | 96.1 | 0.1 | -0.23 | 2.80 | 0.76 | 0.88 | 2.11 | 69409 | 4361 | 42 | 1583 | 171 | 204 | 0 | logfile |
✔ | 4V1A | 2787 | 2022-12-16 | 2014-09-25 | 3.4 | 3.43 | — | 3.4 | 0.009 | 1.29 | 0.0 | 0.05 | 13.81 | 0.01 | 2.067 | 12.20 | 6.03 | 4.6 | 95.3 | 0.1 | -2.62 | 0.37 | 0.78 | 1.69 | 3.4 | 0.003 | 0.69 | 0.0 | 0.04 | 16.83 | 0.00 | 2.076 | 10.41 | 0.15 | 4.3 | 95.6 | 0.1 | 0.54 | 1.91 | 0.38 | 0.78 | 1.67 | 31917 | 3843 | 24 | 0 | 94 | 0 | 0 | logfile |
✘ | 6ioL | 9696 | 2022-12-22 | 2018-10-30 | 3.76 | 3.62 | 3.77 | 3.8 | 0.005 | 0.97 | 0.0 | 0.06 | 10.77 | 0.01 | 2.201 | 5.12 | 0.33 | 5.6 | 94.4 | 0.0 | -4.06 | 0.63 | 0.80 | 2.11 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 49077 | 6450 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N38 | 9341 | 2022-12-15 | 2018-11-14 | 3.7 | 3.82 | — | 3.8 | 0.013 | 1.29 | 0.0 | 0.08 | 10.00 | 0.01 | 2.216 | 1.46 | 0.31 | 2.7 | 97.2 | 0.1 | 0.10 | 0.78 | 0.79 | 2.54 | 3.7 | 0.003 | 0.65 | 0.0 | 0.04 | 14.34 | 0.00 | 2.182 | 6.61 | 0.16 | 2.3 | 97.7 | 0.0 | 0.92 | 0.83 | 0.80 | 0.82 | 2.17 | 24456 | 3098 | 11 | 0 | 39 | 0 | 0 | logfile |
✔ | 6PSY | 20468 | 2022-12-12 | 2019-07-14 | 2.8 | 2.96 | — | 3.0 | 0.007 | 1.08 | 0.0 | 0.06 | 11.32 | 0.01 | 2.256 | 8.88 | 0.40 | 8.3 | 91.7 | 0.0 | -4.87 | 0.59 | 0.74 | 3.67 | 3.0 | 0.004 | 0.68 | 0.0 | 0.04 | 16.61 | 0.00 | 2.184 | 14.29 | 2.85 | 7.4 | 92.6 | 0.0 | -1.24 | 1.26 | 0.64 | 0.80 | 3.07 | 11540 | 1429 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 6SST | 10305 | 2022-12-11 | 2019-09-09 | 3.4 | 3.46 | — | 3.4 | 0.009 | 0.94 | 0.0 | 0.07 | 16.79 | 0.00 | 2.430 | 5.73 | 2.13 | 10.1 | 89.9 | 0.0 | -4.47 | 0.56 | 0.80 | 6.33 | 3.4 | 0.005 | 0.69 | 0.0 | 0.05 | 15.22 | 0.00 | 2.342 | 10.76 | 0.21 | 14.6 | 85.4 | 0.0 | -4.82 | 0.49 | 0.59 | 0.84 | 5.27 | 4900 | 730 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KS8 | 0760 | 2022-12-12 | 2019-08-23 | 4.69 | 4.76 | — | 4.6 | 0.001 | 0.39 | 0.0 | 0.04 | 7.12 | 0.00 | 2.228 | 5.95 | 0.01 | 4.4 | 95.5 | 0.0 | -3.61 | 0.77 | 0.67 | — | 4.6 | 0.004 | 0.80 | 1.0 | 0.05 | 11.72 | 0.00 | 2.042 | 24.03 | 0.00 | 4.6 | 95.3 | 0.0 | -0.71 | 1.94 | 0.82 | 0.74 | — | 61943 | 8120 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 6DJo | 7938 | 2022-12-12 | 2018-05-25 | 3.6 | 3.75 | — | 3.7 | 0.009 | 0.94 | 0.0 | 0.06 | 10.85 | 0.01 | 2.053 | 6.86 | 0.96 | 4.9 | 95.1 | 0.0 | -4.76 | 0.69 | 0.84 | 3.42 | 3.6 | 0.005 | 0.70 | 0.0 | 0.05 | 15.01 | 0.00 | 1.897 | 9.05 | 0.56 | 5.9 | 94.1 | 0.0 | -1.71 | 2.19 | 0.70 | 0.85 | 2.85 | 11748 | 1488 | 8 | 0 | 8 | 0 | 0 | logfile |
✔ | 6iG9 | 9664 | 2022-12-13 | 2018-09-25 | 4.6 | 5.44 | 4.27 | 4.3 | 0.007 | 1.07 | 0.0 | 0.05 | 9.51 | 0.01 | 2.299 | 9.69 | 0.73 | 10.2 | 89.7 | 0.2 | -3.99 | 0.69 | 0.65 | — | 4.2 | 0.002 | 0.65 | 0.0 | 0.04 | 4.80 | 0.00 | 2.253 | 1.55 | 0.00 | 8.0 | 92.0 | 0.0 | 1.51 | 1.56 | 0.84 | 0.79 | — | 17122 | 3386 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6MHW | 9120 | 2022-12-18 | 2018-09-18 | 4.0 | 4.10 | 3.97 | 4.0 | 0.004 | 0.62 | 0.0 | 0.13 | 7.02 | 0.00 | 1.933 | 7.04 | 0.00 | 3.4 | 96.6 | 0.0 | -2.09 | 0.79 | 0.77 | — | 4.0 | 0.003 | 0.67 | 0.0 | 0.12 | 12.85 | 0.00 | 1.905 | 10.25 | 0.25 | 5.4 | 94.6 | 0.0 | 1.46 | 1.49 | 0.79 | 0.79 | — | 34414 | 2452 | 4 | 0 | 0 | 0 | 16514 | logfile |
✔ | 6DJM | 7936 | 2022-12-12 | 2018-05-25 | 3.1 | 3.26 | — | 3.2 | 0.010 | 1.01 | 0.0 | 0.06 | 10.99 | 0.01 | 2.069 | 3.69 | 0.00 | 4.2 | 95.8 | 0.0 | -4.16 | 0.67 | 0.84 | 3.65 | 3.2 | 0.003 | 0.57 | 0.0 | 0.04 | 15.21 | 0.00 | 1.964 | 7.54 | 0.16 | 4.1 | 95.9 | 0.0 | -0.33 | 1.26 | 0.68 | 0.86 | 2.94 | 11768 | 1488 | 12 | 0 | 8 | 4 | 0 | logfile |
✔ | 5NJ3 | 3654 | 2022-12-12 | 2017-03-28 | 3.78 | 3.89 | — | 3.8 | 0.011 | 1.16 | 0.0 | 0.06 | 10.49 | 0.01 | 2.183 | 8.79 | 0.68 | 6.0 | 93.9 | 0.1 | -3.80 | 0.72 | 0.79 | 2.92 | 3.8 | 0.005 | 0.74 | 0.0 | 0.05 | 13.79 | 0.00 | 2.103 | 11.74 | 0.34 | 5.3 | 94.6 | 0.1 | 0.42 | 1.26 | 0.72 | 0.79 | 2.26 | 12662 | 1958 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 6K0B | 9900 | 2022-12-15 | 2019-05-05 | 4.3 | 4.49 | — | 4.2 | 0.003 | 0.78 | 0.0 | 0.04 | 14.21 | 0.01 | 2.011 | 5.73 | 0.66 | 6.1 | 93.9 | 0.0 | -3.67 | 0.84 | 0.69 | — | 4.2 | 0.003 | 0.67 | 0.0 | 0.04 | 15.17 | 0.00 | 2.093 | 21.43 | 0.00 | 7.3 | 92.6 | 0.1 | -0.56 | 1.78 | 0.88 | 0.79 | — | 25908 | 1376 | 16 | 682 | 2 | 0 | 0 | logfile |
✔ | 5A2Q | 3019 | 2022-12-15 | 2015-05-21 | 3.9 | 4.01 | — | 3.9 | 0.008 | 1.23 | 0.0 | 0.05 | 19.81 | 0.01 | 1.830 | 13.41 | 12.93 | 4.3 | 95.5 | 0.2 | -3.44 | 0.89 | 0.88 | 1.18 | 3.9 | 0.004 | 0.72 | 0.0 | 0.04 | 18.72 | 0.00 | 1.818 | 15.77 | 0.82 | 5.1 | 94.8 | 0.1 | -0.34 | 1.60 | 0.86 | 0.82 | 1.23 | 80749 | 4931 | 45 | 1922 | 115 | 144 | 0 | logfile |
✔ | 6V3E | 21034 | 2022-12-22 | 2019-11-25 | 4.4 | 4.86 | — | 3.6 | 0.002 | 0.45 | 0.0 | 0.03 | 14.34 | 0.02 | 2.039 | 11.31 | 0.05 | 2.4 | 97.6 | 0.0 | -1.40 | 0.88 | 0.74 | — | 3.6 | 0.008 | 0.97 | 0.0 | 0.05 | 17.24 | 0.01 | 1.330 | 44.05 | 0.00 | 6.6 | 93.3 | 0.1 | -1.49 | 1.77 | 0.90 | 0.79 | — | 50850 | 2311 | 20 | 1528 | 0 | 0 | 0 | logfile |
✔ | 6N3A | 9349 | 2022-12-11 | 2018-11-14 | 3.3 | 3.44 | — | 3.6 | 0.008 | 1.14 | 0.0 | 0.05 | 14.53 | 0.01 | 2.469 | 17.25 | 0.00 | 8.9 | 91.1 | 0.0 | -5.23 | 0.49 | 0.76 | 3.75 | 3.6 | 0.005 | 0.96 | 0.0 | 0.04 | 19.28 | 0.00 | 2.210 | 17.25 | 2.05 | 10.2 | 89.8 | 0.0 | -5.15 | 1.99 | 0.51 | 0.79 | 2.70 | 4310 | 600 | 20 | 0 | 0 | 0 | 0 | logfile |
✔ | 6J0F | 9763 | 2022-12-14 | 2018-12-24 | 3.8 | 3.95 | — | 3.9 | 0.007 | 1.04 | 0.0 | 0.06 | 15.76 | 0.01 | 2.265 | 5.30 | 2.19 | 4.9 | 95.1 | 0.0 | -4.54 | 0.64 | 0.86 | 2.41 | 3.9 | 0.005 | 0.80 | 0.0 | 0.05 | 17.01 | 0.00 | 2.141 | 12.00 | 0.78 | 7.5 | 92.5 | 0.0 | -1.35 | 2.05 | 0.64 | 0.86 | 2.05 | 19314 | 2472 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 6GJZ | 0012 | 2022-12-12 | 2018-05-17 | 4.06 | 4.32 | 3.49 | 4.1 | 0.011 | 1.11 | 0.0 | 0.05 | 10.30 | 0.01 | 2.008 | 14.06 | 0.00 | 10.8 | 88.9 | 0.3 | -4.09 | 0.66 | 0.79 | — | 4.1 | 0.004 | 0.79 | 0.0 | 0.04 | 11.98 | 0.00 | 1.992 | 29.46 | 0.00 | 11.3 | 88.6 | 0.1 | -0.92 | 1.53 | 0.67 | 0.80 | — | 10503 | 682 | 4 | 28 | 2 | 0 | 4402 | logfile |
✘ | 6EXV | 3981 | 2022-12-18 | 2017-11-09 | 3.6 | 3.52 | 3.44 | 3.5 | 0.008 | 1.10 | 0.0 | 0.06 | 12.80 | 0.01 | 2.022 | 5.74 | 0.29 | 8.9 | 91.1 | 0.1 | -4.63 | 0.68 | 0.74 | 3.30 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32717 | 3905 | 22 | 75 | 9 | 0 | 0 | logfile |
✔ | 6UFR | 20759 | 2022-12-11 | 2019-09-24 | 2.5 | 2.80 | — | 2.8 | 0.012 | 0.96 | 0.0 | 0.07 | 13.71 | 0.01 | 2.209 | 5.48 | 0.00 | 6.6 | 93.4 | 0.0 | -1.99 | 0.50 | 0.87 | 5.55 | 2.8 | 0.004 | 0.63 | 0.0 | 0.06 | 17.00 | 0.00 | 2.402 | 2.46 | 2.95 | 4.8 | 95.2 | 0.0 | -0.87 | 0.98 | 0.51 | 0.89 | 5.06 | 4420 | 630 | 20 | 0 | 0 | 90 | 0 | logfile |