Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7KTW	23032	2022-07-03	2020-11-24	4.27	4.73	—	4.4	0.007	1.12	0.0	0.05	12.46	0.01	2.214	14.28	0.12	5.1	94.9	0.0	-4.61	0.81	0.82	—	4.4	0.003	0.79	0.0	0.04	13.24	0.00	2.137	19.56	0.12	3.3	96.7	0.0	0.47	0.94	0.80	0.80	—	7577	995	1	0	0	0	0	logfile
✔	7DSQ	30841	2022-07-03	2020-12-31	3.4	3.49	—	3.5	0.010	1.19	0.0	0.49	15.73	0.01	2.292	5.94	0.89	8.8	90.3	0.9	-4.52	0.64	0.82	1.74	3.5	0.003	1.21	0.0	0.11	16.30	0.00	2.204	6.87	0.38	7.3	92.6	0.1	-0.16	0.60	0.65	0.82	1.48	7507	935	7	0	11	15	0	logfile
✔	7B5C	12025	2022-07-03	2020-12-03	3.7	3.81	3.61	3.8	0.005	0.86	0.0	0.05	15.21	0.01	2.239	7.51	0.78	5.9	94.1	0.0	-3.64	0.62	0.77	1.51	3.8	0.003	0.73	0.0	0.04	16.45	0.01	2.115	11.25	0.23	5.7	94.3	0.0	-0.33	0.67	0.62	0.76	1.12	11770	1436	4	0	4	0	0	logfile
✔	6VEC	21155	2022-07-02	2019-12-31	3.9	3.99	—	3.9	0.008	1.02	0.0	0.05	10.32	0.01	1.923	3.67	0.95	7.2	92.3	0.5	-3.21	0.79	0.82	2.06	3.8	0.004	0.70	0.0	0.04	13.16	0.00	1.941	10.00	0.19	5.8	93.9	0.3	0.10	1.64	0.80	0.87	1.64	53064	6721	33	0	22	0	0	logfile
✔	7Ji0	22341	2022-07-03	2020-07-21	2.95	3.30	3.08	3.2	0.003	0.48	0.0	0.04	12.97	0.00	2.233	4.08	5.91	4.5	95.5	0.0	-3.04	0.73	0.84	4.32	3.2	0.003	0.49	0.0	0.04	15.52	0.00	2.212	4.08	2.46	4.0	96.0	0.0	1.31	0.46	0.70	0.82	3.40	3556	432	4	0	0	0	0	logfile
✘	7AHH	11786	2022-07-03	2020-09-24	3.5	3.59	3.55	3.6	0.008	0.95	0.0	0.07	13.95	0.00	1.340	14.42	0.23	7.6	92.4	0.0	-1.56	0.70	0.79	2.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12125	1562	7	0	4	0	0	logfile
✔	7CMH	30406	2022-07-03	2020-07-27	3.4	3.57	—	3.6	0.006	1.05	0.0	0.06	15.38	0.01	2.214	9.49	1.18	8.6	90.7	0.8	-5.98	0.63	0.81	2.75	3.5	0.006	0.79	0.0	0.04	16.32	0.01	2.138	8.82	0.65	7.8	92.1	0.1	-1.00	0.60	0.65	0.83	1.83	7368	928	7	0	10	0	0	logfile
✘	7AHE	11784	2022-07-03	2020-09-24	4.1	4.22	4.11	4.1	0.006	0.99	0.0	0.08	12.69	0.00	1.344	16.70	0.45	9.6	90.4	0.0	-5.40	0.69	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10060	1308	5	0	1	0	0	logfile
✔	7K4F	22667	2022-07-04	2020-09-15	3.75	4.23	—	4.2	0.012	1.38	0.0	0.06	12.35	0.01	2.231	4.24	1.50	12.1	87.9	0.0	-5.98	0.57	0.85	2.49	4.2	0.003	0.90	0.0	0.04	16.72	0.00	2.177	11.27	0.61	9.2	90.7	0.0	-1.38	3.60	0.61	0.85	1.85	19875	2456	8	0	6	0	0	logfile
✔	7D7M	30608	2022-07-03	2020-10-05	3.3	2.94	3.16	3.3	0.004	0.64	0.0	0.06	14.43	0.00	2.208	10.14	0.00	1.3	98.7	0.0	0.14	0.64	0.75	2.13	3.3	0.004	0.67	0.0	0.04	15.22	0.01	2.178	9.57	0.59	2.1	97.9	0.0	0.71	0.53	0.62	0.76	1.54	7326	1031	6	0	1	0	0	logfile
✔	7JQC	22433	2022-07-05	2020-08-10	3.3	3.83	—	3.4	0.006	0.93	0.0	0.05	17.61	0.01	2.211	7.88	0.50	7.6	92.3	0.2	-4.52	0.80	0.80	1.10	3.4	0.005	0.73	0.0	0.04	17.89	0.01	2.017	21.34	0.65	9.3	90.7	0.0	-2.09	1.61	0.81	0.82	1.08	77823	4837	35	1840	0	0	0	logfile
✔	7KTT	23029	2022-07-03	2020-11-24	4.17	4.46	—	4.2	0.007	1.04	0.0	0.06	13.23	0.01	2.239	12.66	0.25	5.7	94.3	0.0	-5.41	0.81	0.78	—	4.2	0.003	0.72	0.0	0.04	13.88	0.00	2.185	16.38	0.00	3.1	96.9	0.0	0.28	0.72	0.80	0.76	—	7568	994	1	0	0	0	0	logfile
✔	7KiP	22889	2022-07-06	2020-10-24	3.39	4.00	3.47	3.9	0.009	0.90	0.0	0.06	8.62	0.01	2.290	1.91	0.00	7.9	92.1	0.1	-4.05	0.83	0.84	3.42	3.9	0.005	0.63	0.0	0.05	11.35	0.00	2.153	4.34	0.13	8.5	91.4	0.0	-1.57	0.57	0.84	0.87	2.86	30612	3576	69	0	222	0	0	logfile
✔	6LU1	0977	2022-07-04	2020-01-24	3.2	3.29	3.03	3.3	0.022	1.77	0.0	0.07	19.98	0.03	2.254	3.89	0.06	5.3	94.7	0.0	-5.98	0.72	0.88	3.87	3.2	0.004	0.75	0.0	0.04	18.40	0.01	2.094	8.29	0.31	5.5	94.5	0.0	-2.34	0.37	0.73	0.89	3.20	21198	1986	21	0	116	5	0	logfile
✔	6YKP	10829	2022-07-03	2020-04-06	2.98	3.28	3.05	3.3	0.014	1.23	0.0	0.07	10.75	0.01	2.350	2.77	0.09	3.0	97.0	0.1	-6.56	0.59	0.85	4.85	3.3	0.003	0.73	0.0	0.04	15.79	0.00	2.229	7.62	1.67	2.4	97.6	0.1	0.93	1.10	0.61	0.86	2.99	10190	1326	9	0	0	7	0	logfile
✔	7KDT	22829	2022-07-03	2020-10-09	3.05	3.34	3.19	3.4	0.012	1.74	0.0	0.09	14.56	0.02	2.562	0.12	0.47	1.4	98.6	0.0	-1.64	0.70	0.77	2.95	3.3	0.002	0.51	0.0	0.03	17.10	0.00	2.221	6.08	0.00	1.8	98.2	0.0	3.06	2.82	0.68	0.79	2.35	8064	505	2	0	0	0	4042	logfile
✔	7K4D	22665	2022-07-04	2020-09-15	3.66	4.18	—	4.3	0.010	1.22	0.0	0.06	12.05	0.01	2.205	4.18	0.38	9.1	90.9	0.0	-6.15	0.51	0.74	2.06	4.3	0.005	0.80	0.0	0.04	16.50	0.00	2.166	11.67	0.66	7.5	92.5	0.0	-1.96	0.85	0.54	0.76	1.51	19801	2448	8	0	7	0	0	logfile
✔	6X14	21988	2022-07-03	2020-05-18	3.71	3.82	—	3.8	0.008	1.10	0.0	0.05	16.45	0.01	2.282	6.68	0.00	3.2	96.8	0.0	-4.81	0.62	0.83	1.45	3.9	0.007	0.86	0.0	0.04	16.77	0.00	2.188	7.97	0.00	3.0	97.0	0.0	0.10	1.15	0.61	0.83	1.32	9486	1239	6	0	9	0	0	logfile
✔	7K4A	22662	2022-07-04	2020-09-15	3.26	3.68	—	3.7	0.013	1.44	0.0	0.06	14.78	0.01	2.263	4.02	0.52	10.5	89.4	0.2	-6.74	0.52	0.81	4.18	3.7	0.005	0.80	0.0	0.04	15.62	0.00	2.154	7.76	0.24	9.9	90.0	0.1	-2.53	1.34	0.64	0.86	2.66	20825	2420	8	0	65	0	0	logfile
✘	6RPo	4979	2022-07-06	2019-05-14	2.39	2.44	—	2.4	0.006	0.92	0.0	0.05	15.02	0.01	2.326	7.31	0.00	3.7	95.8	0.5	-2.67	0.72	0.86	4.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	101400	12060	60	0	0	0	0	logfile

• ← previous
• Page 3 of 392
• next →