Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6BX3	7303	2021-08-08	2017-12-16	4.3	4.71	—	4.4	0.007	1.49	0.0	0.08	12.65	0.01	1.094	24.68	0.97	18.8	81.2	0.1	-5.00	0.74	0.72	—	4.4	0.005	0.92	0.0	0.05	13.33	0.00	2.018	29.37	0.00	18.2	81.7	0.1	-3.55	1.46	0.74	0.74	—	10456	1413	7	0	0	0	0	logfile
✔	6FRK	4300	2021-08-08	2018-02-16	3.7	3.82	3.64	3.8	0.006	1.06	0.0	0.06	20.11	0.01	1.793	15.69	16.63	10.8	88.6	0.6	-5.20	0.69	0.84	1.14	3.8	0.006	0.76	0.0	0.04	18.43	0.01	1.387	15.48	0.63	9.5	90.4	0.1	-1.42	1.69	0.70	0.86	1.50	159957	8464	70	4268	159	0	0	logfile
✔	3JCi	6555	2021-08-12	2015-12-13	2.9	3.14	—	3.1	0.010	0.91	0.0	0.05	8.65	0.01	2.239	18.52	0.00	2.1	97.3	0.5	-2.08	0.75	0.85	5.77	3.1	0.003	0.65	0.0	0.04	16.06	0.00	2.233	6.20	1.54	2.5	97.5	0.0	-0.70	0.70	0.69	0.85	4.69	93420	11400	60	0	0	0	0	logfile
✔	5NCo	3617	2021-08-13	2017-03-06	4.8	5.02	—	4.8	0.007	1.08	0.0	0.05	15.62	0.00	1.168	8.50	9.43	3.1	96.8	0.1	-2.95	0.70	0.76	—	4.8	0.004	0.71	0.0	0.04	15.58	0.01	0.807	29.77	0.03	6.3	93.6	0.1	-0.45	1.77	0.71	0.84	—	101694	4738	43	3112	46	0	0	logfile
✔	5TC1	8397	2021-08-08	2016-09-13	3.6	3.60	—	3.6	0.006	0.87	0.0	0.08	18.34	0.01	1.126	33.79	0.27	3.3	96.7	0.0	-3.80	0.19	0.77	4.30	3.6	0.005	0.63	0.0	0.04	17.04	0.00	2.182	7.25	0.45	5.4	94.6	0.0	-0.60	0.72	0.21	0.84	2.91	15393	1352	10	242	0	0	0	logfile
✔	5M6S	3451	2021-08-07	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	20.10	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.5	0.003	0.64	0.0	0.03	18.57	0.00	1.968	10.68	0.00	4.2	95.8	0.0	1.93	2.66	0.04	0.07	—	1593	98	1	0	0	0	793	logfile
✔	3JCD	6549	2021-08-15	2015-12-01	3.7	5.07	—	19.0	0.006	0.84	0.0	0.04	14.69	0.00	1.289	14.54	0.02	9.6	85.8	4.5	-2.43	0.34	0.04	0.30	3.4	0.012	1.73	4.0	0.08	22.58	0.01	1.060	92.69	0.27	19.3	79.2	1.5	-4.64	3.41	0.76	0.52	0.22	147815	5982	57	4715	0	0	0	logfile
✔	5FTJ	3295	2021-08-10	2016-01-14	2.3	2.04	—	2.0	0.010	1.36	0.0	0.18	14.83	0.01	1.862	40.24	0.81	5.7	93.3	1.0	-3.32	0.42	0.64	2.67	2.0	0.005	0.85	0.0	0.05	17.99	0.01	2.121	14.14	2.36	6.5	93.3	0.1	-0.59	1.25	0.47	0.68	1.50	34602	4338	18	0	18	120	0	logfile
✔	6iYC	9751	2021-08-08	2018-12-14	2.6	2.84	—	2.9	0.017	1.23	0.0	0.31	11.79	0.01	2.053	3.52	0.88	7.5	92.3	0.2	-3.74	0.71	0.85	3.81	2.8	0.004	0.90	0.0	0.11	16.20	0.00	2.087	9.98	1.75	5.5	94.4	0.1	0.32	1.30	0.71	0.87	2.77	11037	1355	8	0	26	0	0	logfile
✔	6CS1	7579	2021-08-09	2018-03-19	4.6	4.79	4.84	6.8	0.005	0.85	0.0	0.05	8.80	0.01	2.229	7.26	0.00	7.2	92.8	0.0	-4.20	0.61	0.31	—	4.6	0.006	0.97	0.0	0.05	11.78	0.01	1.996	31.62	0.07	11.0	88.9	0.1	-2.91	2.36	0.73	0.63	—	25995	3202	6	0	75	0	0	logfile
✔	5GAE	8001	2021-08-12	2015-11-25	3.33	3.45	—	3.3	0.007	0.94	0.0	0.04	14.78	0.00	1.884	5.64	5.36	3.0	96.9	0.1	-2.76	0.79	0.88	2.24	3.3	0.006	0.66	0.0	0.04	15.24	0.00	1.184	12.42	0.73	3.9	96.0	0.1	-0.05	2.10	0.79	0.88	2.22	95192	3886	41	3007	349	0	0	logfile
✔	6D73	7822	2021-08-10	2018-04-23	3.8	4.18	3.89	3.8	0.007	1.04	0.0	0.06	10.45	0.01	1.420	7.10	0.07	6.4	93.5	0.1	-3.78	0.75	0.76	1.62	3.8	0.004	0.66	0.0	0.04	13.18	0.00	2.106	11.47	0.30	6.2	93.8	0.0	0.72	0.78	0.77	0.79	1.18	35340	4878	8	0	92	0	0	logfile
✔	6CP3	7546	2021-08-11	2018-03-13	3.8	3.87	—	3.8	0.009	1.18	0.0	0.06	10.70	0.01	2.224	8.06	0.36	7.6	92.2	0.2	-3.89	0.71	0.76	1.55	3.8	0.010	0.98	0.0	0.04	14.98	0.01	1.818	21.88	0.41	5.4	94.5	0.1	-1.14	2.89	0.74	0.81	1.22	38814	5104	32	0	5	0	0	logfile
✘	6CP5	7547	2021-08-07	2018-03-13	4.2	4.19	—	4.2	0.003	0.83	0.0	0.04	10.90	0.00	1.205	23.98	2.24	7.2	92.0	0.8	-4.36	0.50	0.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9413	1234	19	0	4	0	0	logfile
✔	6MAR	9062	2021-08-08	2018-08-28	4.5	4.66	4.48	4.4	0.006	0.90	0.0	0.06	11.04	0.01	2.031	7.46	0.26	9.8	90.0	0.2	-3.41	0.78	0.81	—	4.4	0.006	0.78	0.0	0.05	12.79	0.01	2.037	19.36	0.00	10.3	89.7	0.0	-2.24	1.40	0.78	0.82	—	19211	2225	16	0	130	0	0	logfile
✔	6N2D	9327	2021-08-07	2018-11-12	3.3	3.50	3.29	3.6	0.008	1.21	0.0	0.07	11.75	0.01	1.610	14.11	0.71	2.6	97.4	0.0	-2.81	0.61	0.78	1.68	3.6	0.004	0.81	0.0	0.04	16.29	0.01	2.145	18.32	1.13	2.0	98.0	0.0	1.96	0.64	0.63	0.80	1.01	7162	993	13	0	0	0	0	logfile
✔	6PBX	20294	2021-08-09	2019-06-14	4.0	4.12	—	4.0	0.006	0.83	0.0	0.05	14.04	0.01	2.264	6.05	0.00	3.8	96.2	0.0	-3.07	0.68	0.67	—	4.0	0.003	0.70	0.0	0.04	15.11	0.00	2.195	12.76	0.09	4.0	96.0	0.0	1.61	0.76	0.73	0.78	—	23028	3152	8	0	0	0	0	logfile
✔	6PWE	20506	2021-08-08	2019-07-22	3.95	4.04	—	4.0	0.010	0.93	0.0	0.05	27.27	0.01	2.264	5.37	0.00	7.4	92.3	0.3	-6.65	0.70	0.80	2.98	4.0	0.005	0.70	0.0	0.04	28.69	0.01	2.063	12.93	0.97	4.9	95.1	0.0	-1.96	1.44	0.70	0.81	1.70	11923	744	10	294	0	0	0	logfile
✔	6A95	6997	2021-08-08	2018-07-11	2.6	2.68	—	2.7	0.011	1.06	0.0	0.07	10.74	0.01	2.354	4.68	1.05	7.2	92.5	0.4	-5.57	0.62	0.81	4.01	2.7	0.011	1.21	0.0	0.04	15.49	0.00	2.216	7.34	1.93	6.9	92.9	0.1	-0.39	1.29	0.66	0.85	3.02	11002	1364	3	0	9	1	0	logfile
✔	6UiV	20788	2021-08-09	2019-10-01	3.3	4.06	—	3.6	0.007	0.89	0.0	0.06	13.35	0.01	2.218	6.94	1.13	4.6	95.4	0.0	-3.51	0.69	0.81	2.55	3.6	0.004	0.63	0.0	0.04	14.49	0.00	2.213	8.45	0.21	2.3	97.7	0.0	2.93	1.19	0.70	0.82	1.94	22902	3157	11	0	0	0	0	logfile

• ← previous
• Page 3 of 276
• next →