Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6UVA	20906	2021-12-01	2019-11-01	2.3	2.12	2.31	2.2	0.002	0.55	0.0	0.04	18.07	0.00	2.207	6.60	3.36	3.2	96.8	0.0	-2.29	0.63	0.72	2.83	2.3	0.003	0.61	0.0	0.04	18.40	0.00	2.158	8.08	3.55	4.4	95.6	0.0	0.30	1.31	0.66	0.78	2.82	9561	1199	7	0	0	0	0	logfile
✔	7L1F	23109	2021-12-01	2020-12-14	3.89	2.82	—	2.2	0.008	1.36	3.0	0.08	13.38	0.01	2.323	3.10	0.00	6.6	93.4	0.0	-4.38	0.72	0.70	2.25	2.4	0.010	1.30	0.0	0.05	15.85	0.01	2.043	15.49	0.90	8.3	91.7	0.0	-1.80	1.22	0.74	0.71	1.82	8825	1009	5	31	4	0	0	logfile
✔	7EXD	31371	2021-12-01	2021-05-27	3.4	2.47	—	2.2	0.002	0.58	0.0	0.15	12.81	0.00	2.114	6.44	0.53	2.1	97.9	0.0	1.95	0.73	0.73	1.79	2.2	0.003	0.66	0.0	0.04	16.20	0.00	2.081	12.41	0.42	2.8	97.2	0.0	0.81	1.21	0.76	0.77	1.99	8749	1118	5	0	1	0	0	logfile
✔	6WWP	21943	2021-12-01	2020-05-09	3.1	2.34	3.10	2.2	0.007	0.96	0.0	0.07	15.33	0.01	1.992	6.69	0.67	6.5	93.3	0.2	-4.23	0.58	0.80	3.85	2.2	0.004	0.65	0.0	0.04	17.29	0.00	1.905	7.27	0.58	4.3	95.6	0.1	-0.40	1.10	0.60	0.85	2.99	9645	1213	5	1	3	0	0	logfile
✔	5M5H	4155	2021-12-01	2016-10-21	4.5	2.29	—	2.2	0.007	1.50	0.0	0.08	12.37	0.01	2.186	39.89	0.00	8.7	88.9	2.4	-5.94	0.14	0.14	—	2.1	0.004	0.94	0.0	0.05	12.39	0.01	2.260	21.55	0.00	7.9	92.1	0.0	-1.85	2.19	0.15	0.13	—	1086	132	1	0	0	0	0	logfile
✔	6SK0	10219	2021-12-01	2019-08-14	2.3	2.29	2.11	2.2	0.008	0.74	0.0	0.05	15.85	0.00	2.202	9.23	0.97	3.3	96.7	0.0	-1.30	0.70	0.83	6.89	2.2	0.005	0.72	0.0	0.05	17.22	0.00	2.164	10.52	0.65	4.5	95.5	0.0	-1.28	1.50	0.80	0.90	6.82	5826	792	3	0	0	0	0	logfile
✔	6ZXA	11516	2021-12-01	2020-07-29	2.38	2.34	—	2.3	0.019	3.63	0.0	0.07	20.59	0.01	2.324	10.63	5.21	12.8	87.2	0.0	-1.00	0.75	0.90	5.13	2.3	0.018	2.56	0.0	0.06	20.71	0.01	2.154	13.10	2.53	11.5	88.5	0.0	0.83	0.35	0.75	0.88	4.32	8442	791	28	0	35	0	0	logfile
✔	6WZG	21972	2021-12-01	2020-05-13	2.3	2.06	2.22	2.3	0.012	1.56	18.0	0.12	13.99	0.01	2.270	4.92	1.65	2.0	98.0	0.0	0.81	0.66	0.71	4.83	2.3	0.003	0.57	0.0	0.04	16.28	0.00	2.162	5.95	1.76	1.8	98.2	0.0	1.69	0.99	0.74	0.86	4.86	8939	1165	6	0	0	0	0	logfile
✔	7M22	23629	2021-12-01	2021-03-15	3.65	2.59	3.89	2.3	0.004	0.82	0.0	0.05	14.14	0.01	2.168	7.55	0.61	4.1	95.9	0.0	-0.78	0.72	0.73	2.84	2.3	0.009	1.24	0.0	0.05	16.80	0.01	2.087	13.43	0.76	5.3	94.7	0.0	-1.00	1.24	0.73	0.74	2.60	6042	748	6	0	3	0	0	logfile
✔	6WWF	21933	2021-12-01	2020-05-09	3.3	2.47	3.31	2.3	0.007	1.04	1.0	0.05	14.86	0.01	2.024	4.92	0.47	5.9	94.1	0.0	-3.69	0.55	0.79	3.10	3.5	0.003	0.69	0.0	0.04	17.00	0.00	1.959	9.85	0.28	4.7	95.3	0.0	-0.29	1.19	0.58	0.84	2.41	9804	1231	6	1	4	0	0	logfile
✔	7DRT	30827	2021-12-01	2020-12-29	2.2	2.32	—	2.3	0.011	1.53	9.0	0.09	13.34	0.01	2.064	5.88	2.38	5.4	94.1	0.5	-0.76	0.39	0.58	3.02	2.3	0.003	0.74	0.0	0.04	17.33	0.01	2.233	9.77	4.90	5.1	94.8	0.1	-0.18	1.11	0.64	0.76	2.48	6849	830	7	0	7	10	0	logfile
✔	6i5A	4413	2021-12-01	2018-11-13	2.3	2.34	1.50	2.3	0.012	1.84	1.0	0.10	14.16	0.01	2.431	6.70	0.74	1.3	97.4	1.3	-0.89	0.26	0.84	3.95	2.3	0.003	0.54	0.0	0.04	16.64	0.00	2.349	2.93	4.44	2.0	98.0	0.0	2.46	1.23	0.30	0.87	4.22	1206	153	1	0	0	0	0	logfile
✔	7RTB	24680	2021-12-01	2021-08-12	2.14	2.32	2.23	2.3	0.003	0.59	0.0	0.04	14.52	0.00	2.277	5.37	0.77	1.6	98.4	0.0	-0.80	0.64	0.69	3.38	2.3	0.003	0.58	0.0	0.04	16.92	0.00	2.262	4.51	2.43	2.3	97.7	0.0	1.24	0.68	0.68	0.82	4.06	8972	1169	7	0	0	1	0	logfile
✔	6UUS	20901	2021-12-01	2019-10-31	2.4	2.10	2.30	2.4	0.002	0.50	0.0	0.04	17.13	0.00	2.214	7.39	3.27	2.8	97.2	0.0	-2.25	0.57	0.72	3.22	2.3	0.002	0.57	0.0	0.04	17.80	0.00	2.176	9.30	2.25	2.6	97.4	0.0	0.57	1.00	0.63	0.76	3.20	9308	1190	7	0	0	0	0	logfile
✔	7KJR	22898	2021-12-01	2020-10-26	2.08	2.52	2.15	2.4	0.007	0.89	0.0	0.05	16.44	0.00	2.254	7.60	0.25	1.8	98.2	0.0	1.13	0.68	0.87	5.29	2.4	0.003	0.52	0.0	0.04	15.79	0.00	2.101	9.36	0.74	2.1	97.9	0.0	1.36	0.39	0.67	0.87	4.69	3840	448	8	0	2	122	0	logfile
✔	7MBX	23749	2021-12-01	2021-04-01	1.95	2.56	1.94	2.4	0.006	0.87	1.0	0.16	12.33	0.01	2.287	2.16	0.45	1.5	98.5	0.0	-0.11	0.72	0.86	4.55	2.3	0.003	0.71	0.0	0.07	15.40	0.00	2.177	5.89	0.89	1.1	98.9	0.0	1.62	0.53	0.71	0.88	4.35	8433	1065	11	0	2	61	0	logfile
✔	7N9A	24253	2021-12-01	2021-06-17	3.5	2.68	—	2.4	0.007	1.26	0.0	0.06	12.63	0.01	2.135	19.96	0.00	2.9	97.1	0.0	-0.16	0.72	0.70	2.72	2.4	0.003	0.71	0.0	0.04	15.45	0.00	2.164	13.87	0.00	2.9	97.1	0.0	-1.00	0.56	0.72	0.69	1.84	2431	312	2	0	0	0	0	logfile
✔	6VSA	21373	2021-12-01	2020-02-10	2.32	3.14	—	2.5	0.013	2.26	75.0	0.16	18.03	0.01	2.048	13.16	4.44	2.3	97.7	0.0	-1.58	0.94	0.94	4.86	2.5	0.006	0.63	0.0	0.04	17.50	0.00	2.159	10.74	2.03	0.6	99.3	0.1	1.33	1.15	0.93	0.91	4.38	9712	1175	10	0	0	42	0	logfile
✔	7B6D	12052	2021-12-02	2020-12-07	4.27	2.60	—	2.5	0.005	0.87	0.0	0.05	14.40	0.01	2.049	32.90	0.43	10.2	89.7	0.1	-2.46	0.78	0.74	—	2.5	0.003	0.72	0.0	0.05	14.37	0.00	2.088	19.62	0.00	8.6	91.4	0.0	-1.16	0.59	0.78	0.74	—	10470	1290	8	0	0	0	0	logfile
✘	7CoY	30420	2021-12-01	2020-08-05	2.5	2.41	2.54	2.5	0.017	1.68	5.0	0.10	14.30	0.01	1.106	11.55	0.90	5.6	94.3	0.1	-3.23	0.57	0.80	3.51	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	57966	6096	66	0	279	84	0	logfile

• ← previous
• Page 3 of 85
• next →