Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7N1X	24126	2022-12-15	2021-05-28	4.0	2.34	—	1.8	0.013	1.88	13.0	0.14	14.66	0.01	1.484	10.07	1.97	8.1	91.3	0.6	-2.39	0.80	0.69	—	1.8	0.004	0.81	0.0	0.05	16.23	0.00	2.143	15.62	0.63	5.4	94.6	0.0	-1.10	1.09	0.80	0.69	—	26810	3257	35	0	95	0	0	logfile
✔	7C7S	30301	2022-12-12	2020-05-26	2.9	2.38	—	1.8	0.006	0.77	0.0	0.14	13.76	0.01	2.153	7.95	0.00	3.7	96.3	0.0	-2.62	0.83	0.80	2.82	1.8	0.003	0.72	0.0	0.04	16.01	0.00	2.176	9.78	3.05	4.1	95.9	0.0	-0.26	0.58	0.85	0.83	2.65	10915	1355	4	0	9	0	0	logfile
✔	7ZG7	14705	2022-12-20	2022-04-02	1.77	1.79	1.79	1.8	0.004	0.74	0.0	0.04	14.44	0.01	1.952	3.40	0.00	1.8	98.2	0.0	3.49	0.77	0.86	9.05	1.8	0.003	0.60	0.0	0.04	15.37	0.00	2.034	3.72	0.37	1.8	98.2	0.0	5.20	0.71	0.79	0.88	9.05	39086	4128	72	0	382	2680	0	logfile
✔	8DWG	27753	2022-12-12	2022-08-01	2.71	2.08	2.72	1.8	0.006	0.64	0.0	0.05	12.65	0.00	2.106	6.99	0.00	4.5	95.5	0.0	-1.14	0.78	0.81	4.92	1.8	0.004	0.59	0.0	0.04	15.14	0.00	2.107	6.25	1.52	4.3	95.7	0.0	0.76	0.32	0.80	0.84	3.66	8350	1101	7	0	1	0	0	logfile
✔	7X2A	32963	2022-12-16	2022-02-25	2.49	2.71	—	1.8	0.013	1.51	6.0	0.11	12.93	0.00	1.682	7.02	6.68	2.2	97.6	0.2	2.33	0.57	0.42	1.04	1.8	0.006	0.86	0.0	0.05	15.39	0.01	1.938	15.62	2.61	4.1	95.8	0.1	-0.35	1.80	0.83	0.80	2.16	26800	3486	5	0	0	0	0	logfile
✔	7S8P	24900	2022-12-11	2021-09-18	2.6	2.11	2.62	1.8	0.005	0.75	0.0	0.05	12.81	0.00	2.183	3.24	0.00	5.8	94.2	0.0	-2.01	0.73	0.75	4.73	1.9	0.003	0.58	0.0	0.04	15.44	0.00	2.202	3.24	2.11	4.6	95.4	0.0	-0.11	0.35	0.84	0.84	3.74	8093	1089	5	0	1	0	0	logfile
✔	7FiJ	31599	2022-12-11	2021-07-31	3.8	2.32	—	1.8	0.001	0.41	0.0	0.04	8.02	0.00	2.344	3.95	0.00	4.1	95.9	0.0	1.10	0.58	0.50	3.05	1.3	0.007	0.96	0.0	0.05	12.41	0.00	2.193	14.37	2.50	18.3	81.7	0.0	-2.16	0.76	0.61	0.55	2.86	3061	561	1	0	0	0	0	logfile
✔	7X29	32962	2022-12-20	2022-02-25	2.49	2.72	—	1.8	0.014	1.76	19.0	0.11	13.58	0.00	1.135	7.48	8.77	2.7	96.7	0.6	1.84	0.82	0.73	2.26	1.9	0.004	0.72	2.0	0.04	15.18	0.00	2.157	9.19	3.94	4.5	95.4	0.1	-0.16	1.73	0.88	0.86	2.89	32453	4230	7	0	0	0	0	logfile
✔	7TU5	26126	2022-12-20	2022-02-02	2.1	1.97	2.06	1.8	0.009	0.85	6.0	0.06	15.88	0.01	1.910	4.49	1.54	1.4	98.6	0.0	0.64	0.84	0.82	4.27	1.7	0.004	0.52	0.0	0.04	16.37	0.00	1.944	5.78	1.95	1.3	98.6	0.1	1.74	0.43	0.87	0.87	4.95	19656	2574	18	0	6	6	0	logfile
✔	7UFM	26477	2022-12-19	2022-03-22	3.9	2.97	4.04	1.8	0.009	1.77	14.0	0.08	22.53	0.01	1.075	9.26	24.41	11.0	89.0	0.0	-4.66	0.68	0.65	0.50	1.8	0.004	1.00	0.0	0.05	19.40	0.01	2.095	21.80	0.67	8.4	91.6	0.0	-1.83	1.02	0.69	0.67	0.62	36392	4354	30	72	14	0	0	logfile
✔	7U67	26362	2022-12-22	2022-03-03	2.5	2.10	2.53	1.8	0.005	0.75	0.0	0.05	17.77	0.00	2.161	3.35	0.91	2.4	97.6	0.0	-0.22	0.79	0.79	3.83	1.8	0.004	0.58	0.0	0.04	17.82	0.00	2.014	4.39	1.64	3.1	96.9	0.0	0.87	0.40	0.83	0.83	3.39	26778	3360	18	0	12	0	0	logfile
✔	7TBG	25798	2022-12-15	2021-12-22	2.5	2.10	2.44	1.8	0.006	0.76	0.0	0.05	13.03	0.01	2.268	1.99	0.57	3.2	96.8	0.0	0.60	0.75	0.79	4.65	1.8	0.004	0.58	0.0	0.04	16.02	0.00	2.091	5.00	1.60	2.1	97.9	0.0	2.32	1.13	0.77	0.82	3.72	19679	1190	6	0	5	20	9858	logfile
✔	7WiG	32529	2022-12-12	2022-01-03	2.7	2.14	—	1.8	0.006	0.75	0.0	0.05	13.13	0.01	2.192	6.98	0.00	2.0	98.0	0.0	1.11	0.78	0.77	3.19	1.8	0.003	0.92	0.0	0.04	15.47	0.00	2.168	5.96	1.23	2.1	97.9	0.0	1.38	0.33	0.79	0.80	3.05	8931	1139	6	0	1	0	0	logfile
✔	7VD9	31911	2022-12-13	2021-09-06	2.29	1.75	2.28	1.8	0.002	0.54	0.0	0.04	17.25	0.00	2.194	8.15	2.33	3.8	96.2	0.0	0.41	0.58	0.72	3.68	1.8	0.004	0.67	0.0	0.05	17.73	0.01	2.197	9.18	3.08	5.1	94.9	0.0	-0.55	0.29	0.59	0.74	3.69	16426	1991	8	0	8	0	0	logfile
✔	7Z0o	14428	2022-12-12	2022-02-23	2.8	1.99	2.70	1.8	0.004	0.66	0.0	0.04	19.63	0.00	2.189	6.24	1.42	1.7	98.3	0.0	1.08	0.68	0.73	3.27	1.7	0.004	0.59	0.0	0.04	21.16	0.00	2.152	8.87	3.02	2.1	97.9	0.0	1.78	0.48	0.77	0.79	3.25	11864	1256	10	78	0	0	0	logfile
✔	7V9L	31824	2022-12-11	2021-08-26	2.6	2.13	—	1.8	0.004	0.69	0.0	0.05	13.08	0.01	2.120	4.19	0.00	3.8	96.2	0.0	0.00	0.67	0.70	3.73	1.9	0.003	0.59	0.0	0.04	15.79	0.00	2.135	10.88	1.38	2.2	97.8	0.0	0.96	0.50	0.77	0.79	2.85	8047	1019	5	0	0	0	0	logfile
✘	7ATE	11921	2022-12-18	2020-10-30	2.4	1.80	2.30	1.8	0.011	1.33	6.0	0.07	16.98	0.01	1.340	17.56	1.67	3.2	96.8	0.0	0.62	0.62	0.78	4.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9056	1098	10	0	9	145	0	logfile
✔	7RPo	24618	2022-12-12	2021-08-03	4.16	2.77	—	1.8	0.003	0.50	0.0	0.04	16.86	0.00	1.759	6.97	1.64	8.5	91.5	0.0	-2.01	0.74	0.71	—	2.2	0.003	0.70	0.0	0.04	18.41	0.00	2.069	11.11	0.00	8.5	91.5	0.1	-1.97	1.73	0.74	0.71	—	10602	1179	9	62	5	0	0	logfile
✔	7Z1Z	14453	2022-12-19	2022-02-25	3.5	2.62	3.61	1.8	0.002	0.51	0.0	0.04	15.15	0.00	2.224	7.63	0.00	2.4	97.6	0.0	0.26	0.64	0.65	1.09	1.7	0.004	0.78	0.0	0.05	18.31	0.00	2.067	15.01	0.23	3.9	96.1	0.0	-0.07	0.75	0.67	0.67	1.49	35605	4031	36	140	12	0	0	logfile
✔	7ZCi	14632	2022-12-19	2022-03-28	2.69	2.32	—	1.8	0.007	0.83	0.0	1.48	15.78	0.01	2.217	6.71	1.77	2.6	97.4	0.0	-0.36	0.89	0.89	3.87	2.2	0.011	2.19	0.0	0.44	16.15	0.00	2.095	11.16	2.14	2.3	97.6	0.0	1.36	0.29	0.89	0.87	3.33	36981	4650	24	0	28	0	0	logfile

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