Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7N1X	24126	2022-05-15	2021-05-28	4.0	2.34	—	1.8	0.013	1.88	13.0	0.14	14.66	0.01	1.484	10.07	1.97	8.1	91.3	0.6	-2.39	0.80	0.69	—	1.8	0.008	0.89	1.0	0.05	16.35	0.01	2.088	14.18	0.60	4.9	95.1	0.0	-1.02	1.09	0.80	0.68	—	26810	3257	35	0	95	0	0	logfile
✔	7RPo	24618	2022-05-13	2021-08-03	4.16	2.77	—	1.8	0.003	0.50	0.0	0.04	16.86	0.00	1.759	6.97	1.64	8.5	91.5	0.0	-2.01	0.74	0.71	—	1.8	0.005	0.77	0.0	0.05	18.51	0.01	1.983	13.27	0.00	11.0	89.0	0.0	-2.17	1.73	0.75	0.71	—	10602	1179	9	62	5	0	0	logfile
✔	7V9L	31824	2022-05-12	2021-08-26	2.6	2.13	—	1.8	0.004	0.69	0.0	0.05	13.08	0.01	2.120	4.19	0.00	3.8	96.2	0.0	0.00	0.67	0.70	3.73	1.9	0.003	0.59	0.0	0.04	15.79	0.00	2.135	10.88	1.38	2.2	97.8	0.0	0.96	0.50	0.77	0.78	2.85	8047	1019	5	0	0	0	0	logfile
✔	7TBG	25798	2022-05-15	2021-12-22	2.5	2.10	2.44	1.8	0.006	0.76	0.0	0.05	13.03	0.01	2.268	1.99	0.57	3.2	96.8	0.0	0.60	0.75	0.79	4.65	1.8	0.004	0.58	0.0	0.04	16.02	0.00	2.091	5.00	1.60	2.1	97.9	0.0	2.32	1.13	0.77	0.82	3.72	19679	1190	6	0	5	20	9858	logfile
✔	7TDF	25827	2022-05-15	2021-12-31	2.7	2.10	2.66	1.9	0.006	0.74	0.0	0.05	12.56	0.01	2.148	2.81	0.19	3.5	96.5	0.0	0.06	0.74	0.77	4.39	1.9	0.006	0.65	0.0	0.04	15.41	0.01	2.090	5.88	1.04	2.9	97.1	0.0	2.17	1.14	0.76	0.80	3.77	19566	1188	2	0	0	0	9792	logfile
✔	6S61	10101	2022-05-14	2019-07-02	1.84	1.89	1.85	1.9	0.011	1.36	0.0	0.06	12.21	0.01	0.312	2.62	1.29	1.8	98.2	0.0	3.69	0.77	0.86	8.46	1.9	0.003	0.57	0.0	0.03	14.82	0.00	1.798	5.19	0.65	1.8	98.2	0.0	4.54	0.74	0.79	0.89	8.65	71060	4128	72	0	30	3854	32904	logfile
✘	7EFD	31084	2022-05-14	2021-03-21	1.77	1.79	1.83	1.9	0.033	3.16	60.0	0.09	15.47	0.02	0.000	2.38	2.15	1.7	97.5	0.8	-0.54	0.71	0.78	5.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20020	2400	20	0	20	780	0	logfile
✔	7P6A	13223	2022-05-12	2021-07-15	1.9	1.91	1.88	1.9	0.004	0.72	0.0	0.06	12.30	0.01	2.247	3.33	0.00	3.8	96.2	0.0	-3.07	0.51	0.86	7.13	1.9	0.003	0.65	0.0	0.05	14.09	0.00	2.291	4.28	0.00	4.7	95.3	0.0	-2.61	0.82	0.55	0.89	7.80	4166	540	10	0	0	76	0	logfile
✔	6WWR	21945	2022-05-13	2020-05-09	2.7	2.08	2.69	1.9	0.009	0.96	1.0	0.06	14.63	0.01	1.967	5.49	0.57	5.8	94.2	0.0	-3.62	0.60	0.77	5.00	2.0	0.004	0.67	0.0	0.04	16.99	0.00	1.916	6.86	1.72	3.9	96.1	0.0	-0.28	1.08	0.62	0.84	3.85	9719	1220	6	1	4	0	0	logfile
✔	7N8o	24239	2022-05-12	2021-06-15	1.93	1.73	—	1.9	0.024	2.36	0.0	0.13	20.20	0.01	1.522	14.85	1.91	3.0	96.9	0.1	0.75	0.73	0.75	5.48	1.9	0.005	0.77	0.0	0.04	18.49	0.01	2.020	11.59	1.40	2.6	97.4	0.0	1.31	0.36	0.75	0.77	5.38	54656	5544	113	0	228	1236	0	logfile
✔	7RCV	24407	2022-05-12	2021-07-08	2.01	1.78	—	1.9	0.024	2.35	0.0	0.13	20.29	0.01	1.915	14.01	1.99	2.6	97.4	0.0	0.92	0.78	0.79	5.10	1.9	0.004	0.79	0.0	0.05	18.79	0.01	2.078	12.10	1.79	2.8	97.2	0.0	0.86	0.91	0.79	0.82	5.23	54656	5544	114	0	228	1236	0	logfile
✔	6ZGL	11210	2022-05-14	2020-06-19	1.9	1.87	—	1.9	0.013	1.55	0.0	0.12	15.52	0.01	2.196	9.41	3.73	1.1	98.9	0.0	0.13	0.73	0.83	7.03	1.9	0.003	0.56	0.0	0.04	15.75	0.00	2.118	4.99	1.00	0.6	99.4	0.0	3.59	0.75	0.76	0.83	7.07	15760	1848	24	0	0	964	0	logfile
✔	6WWU	21948	2022-05-13	2020-05-09	2.7	2.08	2.76	1.9	0.011	1.26	1.0	0.06	16.22	0.02	2.072	6.98	2.78	5.8	94.0	0.2	-3.98	0.60	0.76	4.02	1.9	0.004	0.64	0.0	0.04	17.69	0.00	1.980	7.35	2.30	3.6	96.4	0.1	-0.47	0.68	0.61	0.82	4.01	9688	1216	6	1	4	0	0	logfile
✔	7VUH	32128	2022-05-13	2021-11-02	3.22	2.19	—	1.9	0.003	0.64	0.0	0.04	13.57	0.00	2.099	14.21	0.00	6.2	93.8	0.0	-1.87	0.71	0.69	2.81	1.9	0.004	0.65	0.0	0.04	15.83	0.01	2.007	14.34	0.33	5.5	94.5	0.0	-1.24	0.38	0.71	0.72	2.33	8302	1042	5	0	1	0	0	logfile
✔	7NJ1	12369	2022-05-13	2021-02-14	2.9	2.23	—	1.9	0.005	0.70	1.0	0.05	13.54	0.00	2.211	9.26	1.09	7.4	92.4	0.2	-2.39	0.75	0.73	2.14	2.0	0.004	0.77	0.0	0.04	16.50	0.01	2.140	11.45	1.91	6.1	93.8	0.1	0.70	0.57	0.77	0.76	2.04	11096	1501	2	0	0	0	0	logfile
✔	7M3N	23658	2022-05-12	2021-03-18	2.4	2.15	2.40	1.9	0.005	0.63	0.0	0.04	15.95	0.00	2.168	5.79	4.28	4.3	95.6	0.1	-2.53	0.43	0.82	4.98	1.9	0.005	0.62	0.0	0.05	16.99	0.00	2.273	7.83	3.06	4.5	95.3	0.1	-0.64	0.46	0.45	0.85	4.62	6004	759	3	0	0	0	0	logfile
✘	7D1T	30547	2022-05-12	2020-09-15	1.95	1.88	1.89	1.9	0.020	1.91	31.0	0.10	18.53	0.02	1.200	3.45	2.40	1.9	97.9	0.2	-0.93	0.77	0.85	6.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	52994	5312	108	0	196	2432	0	logfile
✘	7EFC	31083	2022-05-14	2021-03-21	1.7	1.76	1.83	1.9	0.032	3.16	80.0	0.09	15.03	0.02	0.000	3.39	2.15	2.5	96.6	0.8	-0.84	0.73	0.80	6.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20020	2400	20	0	20	780	0	logfile
✔	7o6Q	12740	2022-05-12	2021-04-12	1.88	2.21	—	1.9	0.010	0.71	0.0	0.05	12.80	0.01	2.115	4.83	1.25	3.2	96.8	0.0	-1.61	0.88	0.85	7.59	1.9	0.002	0.47	0.0	0.04	14.46	0.00	2.188	5.16	1.63	0.8	99.2	0.0	3.35	0.36	0.90	0.90	6.06	7999	997	8	0	0	399	0	logfile
✔	7N1U	24123	2022-05-15	2021-05-28	3.14	2.62	—	1.9	0.013	1.75	7.0	0.13	14.19	0.01	2.003	6.76	1.56	6.1	93.7	0.3	-1.65	0.83	0.80	3.13	1.9	0.004	0.76	0.0	0.05	15.84	0.01	2.016	11.63	0.25	4.0	96.0	0.0	-0.09	0.66	0.84	0.83	2.29	26619	3225	39	0	99	0	0	logfile

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