Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7S8P	24900	2022-07-03	2021-09-18	2.6	2.11	2.62	1.8	0.005	0.72	0.0	0.05	12.77	0.00	1.176	3.24	0.00	5.8	94.2	0.0	-2.01	0.73	0.75	4.73	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8093	1089	5	0	1	0	0	logfile
✔	7TBG	25798	2022-07-05	2021-12-22	2.5	2.10	2.44	1.8	0.006	0.76	0.0	0.05	13.03	0.01	2.268	1.99	0.57	3.2	96.8	0.0	0.60	0.75	0.79	4.65	1.8	0.004	0.58	0.0	0.04	16.02	0.00	2.091	5.00	1.60	2.1	97.9	0.0	2.32	1.13	0.77	0.82	3.72	19679	1190	6	0	5	20	9858	logfile
✔	7M3G	23654	2022-07-03	2021-03-18	2.5	2.29	—	1.8	0.007	0.95	14.0	0.06	16.94	0.01	2.281	2.29	0.93	3.0	97.0	0.0	-2.02	0.84	0.85	3.70	1.8	0.003	0.56	14.0	0.04	17.35	0.01	2.182	4.31	2.29	3.2	96.8	0.0	0.03	1.15	0.85	0.87	3.24	13298	1627	11	0	41	0	0	logfile
✔	7VX7	32170	2022-07-05	2021-11-12	3.6	2.45	—	1.8	0.010	1.26	1.0	0.07	9.43	0.01	1.349	4.79	0.11	3.8	95.9	0.3	-1.25	0.54	0.44	0.90	1.6	0.005	0.76	0.0	0.05	13.73	0.01	2.081	13.12	0.40	4.7	95.2	0.1	-0.62	0.86	0.64	0.62	1.22	24717	3162	3	0	0	0	0	logfile
✔	7RPo	24618	2022-07-03	2021-08-03	4.16	2.77	—	1.8	0.003	0.50	0.0	0.04	16.86	0.00	1.759	6.97	1.64	8.5	91.5	0.0	-2.01	0.74	0.71	—	1.8	0.005	0.77	0.0	0.05	18.51	0.01	1.983	13.27	0.00	11.0	89.0	0.0	-2.17	1.73	0.75	0.71	—	10602	1179	9	62	5	0	0	logfile
✔	7VD9	31911	2022-07-04	2021-09-06	2.29	1.75	2.28	1.8	0.002	0.54	0.0	0.04	17.25	0.00	2.194	8.15	2.33	3.8	96.2	0.0	0.41	0.58	0.72	3.68	1.8	0.004	0.65	0.0	0.05	17.58	0.01	2.186	8.62	2.68	4.5	95.5	0.0	-0.21	0.29	0.59	0.73	3.61	16426	1991	8	0	8	0	0	logfile
✔	7TU5	26126	2022-07-07	2022-02-02	2.1	1.97	2.06	1.8	0.009	0.85	6.0	0.06	15.88	0.01	1.910	4.49	1.54	1.4	98.6	0.0	0.64	0.84	0.82	4.27	1.7	0.004	0.52	0.0	0.04	16.37	0.00	1.944	5.78	1.95	1.3	98.6	0.1	1.74	0.43	0.87	0.87	4.95	19656	2574	18	0	6	6	0	logfile
✔	7Z1Z	14453	2022-07-07	2022-02-25	3.5	2.62	3.61	1.8	0.002	0.51	0.0	0.04	15.15	0.00	2.224	7.63	0.00	2.4	97.6	0.0	0.26	0.64	0.65	1.09	1.7	0.006	0.82	0.0	0.05	18.28	0.01	2.072	15.77	0.34	3.9	96.1	0.0	-0.07	0.74	0.68	0.68	1.51	35605	4031	36	140	12	0	0	logfile
✔	7Z0o	14428	2022-07-03	2022-02-23	2.8	1.99	2.70	1.8	0.004	0.66	0.0	0.04	19.63	0.00	2.189	6.24	1.42	1.7	98.3	0.0	1.08	0.68	0.73	3.27	1.7	0.004	0.60	0.0	0.04	21.28	0.00	2.126	9.04	2.84	2.4	97.6	0.0	1.69	0.49	0.77	0.78	3.19	11864	1256	10	78	0	0	0	logfile
✘	7WiG	32529	2022-07-03	2022-01-03	2.7	2.14	—	1.8	0.005	0.63	0.0	0.05	13.04	0.00	1.201	6.98	0.00	2.0	98.0	0.0	1.11	0.78	0.77	3.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8931	1139	6	0	1	0	0	logfile
✔	7UFM	26477	2022-07-07	2022-03-22	3.9	2.97	4.04	1.8	0.009	1.77	14.0	0.08	22.53	0.01	1.075	9.26	24.41	11.0	89.0	0.0	-4.66	0.68	0.65	0.50	1.8	0.006	1.10	0.0	0.05	19.48	0.01	2.099	21.44	1.07	8.3	91.7	0.0	-1.94	1.02	0.68	0.66	0.48	36392	4354	30	72	14	0	0	logfile
✔	7T6U	25728	2022-07-03	2021-12-14	2.9	2.23	—	1.9	0.006	1.00	5.0	0.06	12.93	0.01	2.315	3.82	0.31	2.0	98.0	0.0	-3.84	0.76	0.78	4.04	2.0	0.004	0.65	1.0	0.04	16.23	0.00	2.132	9.53	2.65	2.4	97.6	0.0	0.24	1.21	0.79	0.82	3.48	9033	1152	6	0	2	0	0	logfile
✔	7WP9	32679	2022-07-05	2022-01-23	2.56	2.20	—	1.9	0.003	0.76	1.0	0.05	14.22	0.01	2.294	4.09	0.40	4.9	95.0	0.1	-4.01	0.71	0.72	2.33	2.0	0.005	0.64	0.0	0.05	16.42	0.00	2.068	8.99	2.25	5.0	95.0	0.0	-1.52	1.00	0.75	0.79	2.39	25077	3141	13	0	28	0	0	logfile
✔	6WWU	21948	2022-07-03	2020-05-09	2.7	2.08	2.76	1.9	0.011	1.26	1.0	0.06	16.22	0.02	2.072	6.98	2.78	5.8	94.0	0.2	-3.98	0.60	0.76	4.02	1.9	0.004	0.64	0.0	0.04	17.69	0.00	1.980	7.35	2.30	3.6	96.4	0.1	-0.47	0.68	0.61	0.82	4.01	9688	1216	6	1	4	0	0	logfile
✔	7P6A	13223	2022-07-03	2021-07-15	1.9	1.91	1.88	1.9	0.004	0.72	0.0	0.06	12.30	0.01	2.247	3.33	0.00	3.8	96.2	0.0	-3.07	0.51	0.86	7.13	1.9	0.003	0.65	0.0	0.05	14.09	0.00	2.291	4.28	0.00	4.7	95.3	0.0	-2.61	0.82	0.55	0.89	7.80	4166	540	10	0	0	76	0	logfile
✘	7RCV	24407	2022-07-03	2021-07-08	2.01	1.78	—	1.9	0.023	2.29	0.0	0.10	19.88	0.01	1.344	14.01	1.99	2.6	97.4	0.0	0.92	0.78	0.79	5.10	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	54656	5544	114	0	228	1236	0	logfile
✔	7WPE	32684	2022-07-06	2022-01-23	2.69	2.24	—	1.9	0.003	0.58	3.0	0.08	13.18	0.00	1.889	4.66	0.12	3.2	96.8	0.0	0.32	0.73	0.76	3.30	2.1	0.007	0.68	0.0	0.05	14.99	0.01	2.048	7.49	1.98	4.2	95.8	0.0	-0.02	0.94	0.75	0.79	3.00	32038	4187	14	0	40	0	0	logfile
✔	7E9H	31032	2022-07-04	2021-03-04	4.0	2.62	—	1.9	0.003	0.48	0.0	0.04	11.36	0.00	2.202	8.13	0.06	2.9	97.1	0.0	-2.83	0.68	0.61	—	1.9	0.007	0.92	0.0	0.04	15.19	0.01	2.081	15.55	0.24	5.1	94.9	0.0	-1.08	2.01	0.71	0.67	—	16847	2309	8	0	0	0	0	logfile
✔	7NJ1	12369	2022-07-03	2021-02-14	2.9	2.23	—	1.9	0.005	0.70	1.0	0.05	13.54	0.00	2.211	9.26	1.09	7.4	92.4	0.2	-2.39	0.75	0.73	2.14	2.0	0.004	0.77	0.0	0.04	16.50	0.01	2.140	11.45	1.91	6.1	93.8	0.1	0.70	0.57	0.77	0.76	2.04	11096	1501	2	0	0	0	0	logfile
✔	6WWo	21942	2022-07-03	2020-05-09	2.8	2.07	2.79	1.9	0.011	1.28	3.0	0.06	15.86	0.02	1.958	6.13	1.99	6.1	93.5	0.3	-4.55	0.58	0.74	4.64	2.0	0.004	0.69	0.0	0.04	17.72	0.00	1.941	8.00	2.75	3.7	96.2	0.1	-0.57	2.43	0.60	0.81	3.89	9784	1230	6	1	5	0	0	logfile

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