Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7NJ1	12369	2023-04-22	2021-02-14	2.9	2.23	—	1.9	0.005	0.70	1.0	0.05	13.54	0.00	2.211	9.26	1.09	7.4	92.4	0.2	-2.39	0.75	0.73	2.14	1.9	0.004	0.76	0.0	0.04	16.51	0.00	2.141	11.13	1.36	6.1	93.7	0.1	0.95	0.58	0.77	0.76	1.93	11096	1501	2	0	0	0	0	logfile
✔	7EFD	31084	2023-04-20	2021-03-21	1.77	1.78	1.82	1.9	0.033	3.16	12.0	0.09	15.47	0.02	0.001	1.61	2.15	1.7	97.5	0.8	-0.54	0.74	0.82	5.75	1.9	0.004	0.74	0.0	0.05	14.91	0.00	1.834	7.38	0.00	3.4	96.0	0.6	0.90	0.55	0.80	0.84	6.49	4004	480	4	0	4	156	0	logfile
✔	7VUH	32128	2023-04-21	2021-11-02	3.22	2.19	—	1.9	0.004	0.66	0.0	0.04	13.59	0.00	2.099	13.73	0.00	6.2	93.8	0.0	-1.87	0.71	0.69	2.81	1.4	0.005	0.70	0.0	0.04	15.83	0.00	2.031	14.94	0.11	6.0	94.0	0.0	-1.28	0.38	0.72	0.73	2.42	8302	1042	5	0	1	0	0	logfile
✔	7USL	26738	2023-04-28	2022-04-25	2.7	2.28	—	1.9	0.004	0.61	0.0	0.05	13.68	0.00	2.106	5.30	0.00	3.2	96.8	0.0	-0.47	0.75	0.73	3.51	1.9	0.006	0.73	0.0	0.05	16.01	0.01	2.094	7.90	2.39	4.5	95.5	0.0	-0.76	0.37	0.78	0.78	3.09	19065	2464	10	0	49	0	0	logfile
✔	7T6U	25728	2023-04-21	2021-12-14	2.9	2.23	—	1.9	0.006	1.00	4.0	0.06	12.93	0.01	2.315	3.49	0.31	2.0	98.0	0.0	-3.84	0.76	0.78	4.04	2.0	0.004	0.66	0.0	0.04	16.06	0.00	2.121	9.58	2.24	2.2	97.8	0.0	0.27	1.20	0.79	0.81	3.37	9033	1152	6	0	2	0	0	logfile
✔	8AG5	15416	2023-04-23	2022-07-19	3.47	2.11	—	1.9	0.003	0.49	0.0	0.04	17.82	0.00	2.194	6.46	0.26	3.8	96.2	0.0	0.35	0.75	0.75	3.20	1.9	0.002	0.51	0.0	0.04	17.77	0.00	2.178	6.94	0.45	3.7	96.3	0.0	0.53	0.87	0.76	0.78	2.90	13762	1703	4	0	0	0	0	logfile
✔	7UM5	26597	2023-04-20	2022-04-06	2.73	2.12	2.75	1.9	0.003	0.57	0.0	0.04	11.84	0.00	2.281	2.29	0.00	3.8	96.2	0.0	-0.74	0.82	0.82	4.55	1.9	0.003	0.61	0.0	0.04	14.14	0.00	2.252	3.96	1.06	4.1	95.9	0.0	0.30	0.34	0.83	0.83	3.86	8277	1104	6	0	1	1	0	logfile
✔	7N8o	24239	2023-04-20	2021-06-15	1.93	1.73	—	1.9	0.025	2.40	0.0	0.11	20.28	0.01	1.522	14.77	1.91	3.0	96.9	0.1	0.75	0.73	0.75	5.48	1.8	0.004	0.81	0.0	0.05	18.74	0.01	2.000	12.74	1.66	3.0	97.0	0.0	0.83	0.34	0.77	0.80	5.41	54656	5544	113	0	228	1236	0	logfile
✔	8E9X	27967	2023-04-20	2022-08-27	2.7	2.10	2.72	1.9	0.004	0.60	0.0	0.04	12.62	0.00	2.200	6.28	0.00	4.2	95.8	0.0	-0.15	0.78	0.79	3.99	1.9	0.004	0.56	0.0	0.04	15.26	0.00	2.233	7.19	1.61	3.8	96.2	0.0	0.55	0.34	0.80	0.82	3.68	8380	1109	6	0	1	0	0	logfile
✔	8E9Y	27968	2023-04-20	2022-08-27	2.79	2.12	2.79	1.9	0.005	0.81	0.0	0.05	13.31	0.00	2.217	12.62	0.12	5.2	94.8	0.0	-1.06	0.76	0.75	3.19	1.9	0.003	0.59	0.0	0.04	15.56	0.00	2.203	9.72	1.73	4.1	95.8	0.1	-0.25	0.36	0.76	0.76	2.63	8479	1123	6	0	1	0	0	logfile
✔	7UM6	26598	2023-04-20	2022-04-06	2.79	2.13	2.81	1.9	0.012	0.64	0.0	0.04	11.16	0.00	2.359	2.38	0.12	3.8	96.2	0.0	-0.54	0.82	0.81	4.30	2.0	0.003	0.61	0.0	0.04	14.17	0.00	2.248	4.01	1.81	2.8	97.2	0.0	0.66	0.38	0.83	0.83	3.39	8175	1094	6	0	1	0	0	logfile
✔	8E9W	27966	2023-04-20	2022-08-27	2.69	2.11	2.70	1.9	0.004	0.67	0.0	0.04	12.89	0.00	2.210	7.31	0.11	2.9	97.1	0.0	0.23	0.78	0.78	3.54	1.9	0.003	0.54	0.0	0.04	15.58	0.00	2.160	7.61	1.60	2.8	97.2	0.0	0.74	0.35	0.80	0.81	2.82	8529	1123	6	0	1	0	0	logfile
✔	7WiC	32528	2023-04-21	2022-01-03	2.8	2.21	—	1.9	0.005	0.62	0.0	0.05	12.93	0.00	2.176	7.87	0.00	2.7	97.3	0.0	0.61	0.76	0.76	3.53	1.9	0.003	0.58	0.0	0.04	15.57	0.00	2.173	7.26	1.11	3.1	96.9	0.0	1.17	0.37	0.78	0.80	3.11	9048	1158	6	0	0	0	0	logfile
✔	8E9Z	27969	2023-04-20	2022-08-27	2.69	2.09	2.64	1.9	0.004	0.80	2.0	0.05	15.12	0.01	2.248	9.60	0.34	3.2	96.8	0.0	-1.79	0.79	0.79	2.55	1.9	0.003	0.57	0.0	0.04	16.07	0.00	1.969	7.33	1.49	3.2	96.8	0.0	0.95	0.35	0.79	0.80	3.01	8566	1129	6	0	2	0	0	logfile
✔	6ZGL	11210	2023-04-23	2020-06-19	1.9	1.87	—	1.9	0.013	1.55	0.0	0.12	15.52	0.01	2.196	9.00	3.73	1.1	98.9	0.0	0.13	0.73	0.83	7.03	1.9	0.003	0.52	0.0	0.04	15.83	0.00	2.114	4.28	0.93	0.9	99.1	0.0	3.77	0.76	0.75	0.83	7.09	15760	1848	24	0	0	964	0	logfile
✔	7o6Q	12740	2023-04-20	2021-04-12	1.88	2.21	—	1.9	0.010	0.71	0.0	0.05	12.80	0.01	2.115	4.83	1.25	3.2	96.8	0.0	-1.61	0.88	0.85	7.59	1.9	0.002	0.47	0.0	0.04	14.51	0.00	2.189	4.70	1.63	0.8	99.2	0.0	3.42	0.36	0.90	0.90	6.06	7999	997	8	0	0	399	0	logfile
✔	7S8o	24899	2023-04-20	2021-09-18	2.58	2.12	2.59	1.9	0.007	0.72	0.0	0.05	13.18	0.00	2.102	3.18	0.00	5.8	94.2	0.0	0.31	0.81	0.80	4.50	1.9	0.002	0.53	0.0	0.04	15.63	0.00	2.207	3.18	0.92	4.4	95.6	0.0	1.05	0.40	0.83	0.83	3.24	8331	1101	6	0	1	0	0	logfile
✔	7UM7	26599	2023-04-20	2022-04-06	2.75	2.13	2.74	1.9	0.002	0.48	0.0	0.04	12.58	0.01	2.220	2.88	0.00	2.8	97.2	0.0	-0.25	0.81	0.80	4.23	1.9	0.005	0.64	0.0	0.04	15.12	0.00	2.206	3.51	1.68	4.1	95.9	0.0	0.51	0.97	0.83	0.83	4.04	8165	1089	6	0	1	0	0	logfile
✔	7XBK	33104	2023-04-27	2022-03-21	3.7	2.43	3.78	1.9	0.005	0.86	0.0	0.05	15.01	0.01	2.095	5.74	0.00	2.9	97.0	0.0	-1.71	0.69	0.63	1.49	1.9	0.004	0.74	0.0	0.05	17.64	0.00	1.818	17.19	0.59	2.4	97.6	0.0	0.15	0.72	0.69	0.69	1.64	25745	3139	19	0	33	0	0	logfile
✔	7SRQ	25401	2023-04-20	2021-11-08	2.7	2.17	—	1.9	0.008	0.80	0.0	0.05	13.54	0.01	2.296	8.67	1.50	2.8	97.2	0.0	0.29	0.70	0.72	4.55	2.7	0.004	0.76	0.0	0.04	15.44	0.00	2.264	8.93	3.50	3.2	96.8	0.0	0.20	0.48	0.72	0.77	3.78	1960	254	1	0	2	0	0	logfile

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