Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ETG	24397	2022-12-17	2022-10-17	3.4	3.34	—	3.2	0.004	0.54	0.0	0.04	16.64	0.00	2.066	12.64	0.58	4.8	95.1	0.1	-0.31	0.60	0.53	0.47	3.2	0.006	0.77	0.0	0.04	17.26	0.01	1.974	17.34	0.77	5.1	94.8	0.1	-0.24	1.02	0.69	0.68	1.34	99257	7394	49	2226	1	0	0	logfile
✔	8ETC	24398	2022-12-17	2022-10-16	3.1	3.22	—	3.1	0.002	0.53	0.0	0.03	16.07	0.00	2.067	10.50	0.70	3.9	95.9	0.2	-0.30	0.65	0.60	0.73	3.1	0.006	0.75	0.0	0.04	17.10	0.01	1.938	16.59	0.68	5.4	94.5	0.1	-0.49	0.97	0.72	0.72	1.82	95651	6128	43	2287	1	0	0	logfile
✔	8ESC	28575	2022-12-21	2022-10-13	3.1	3.13	3.05	3.2	0.002	0.51	0.0	0.04	13.90	0.00	2.156	7.03	0.02	5.0	95.0	0.0	-0.12	0.79	0.79	2.12	3.1	0.003	0.57	0.0	0.04	15.88	0.00	1.996	8.91	0.19	5.1	94.9	0.0	0.48	0.52	0.83	0.83	1.91	43279	5300	7	0	3	0	0	logfile
✔	8ERR	28559	2022-12-15	2022-10-12	3.1	3.29	3.06	3.3	0.010	1.32	2.0	0.08	10.01	0.01	2.346	2.40	0.88	3.0	96.7	0.3	0.26	0.73	0.78	4.14	3.3	0.003	0.61	0.0	0.05	12.66	0.00	2.174	3.48	0.10	3.2	96.8	0.0	0.59	1.52	0.72	0.75	3.88	25780	3742	13	0	50	0	0	logfile
✔	8ERQ	28558	2022-12-11	2022-10-12	3.3	3.48	3.22	3.5	0.010	1.32	0.0	0.07	10.07	0.01	2.265	2.12	0.95	3.8	96.2	0.0	0.38	0.63	0.76	4.07	3.5	0.004	0.67	0.0	0.05	14.01	0.00	2.286	4.41	0.63	4.3	95.7	0.0	-0.33	0.99	0.65	0.84	3.73	3178	423	3	0	1	0	0	logfile
✘	8EP0	28494	2022-12-18	2022-10-04	4.9	6.49	5.04	5.3	0.004	0.79	0.0	0.05	12.19	0.01	2.237	11.96	0.00	3.6	96.4	0.0	0.06	0.70	0.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24408	3372	8	0	0	0	0	logfile
✔	8EoW	28487	2022-12-15	2022-10-04	3.9	4.29	3.96	4.2	0.003	0.57	0.0	0.04	16.05	0.00	2.211	8.32	0.35	4.0	96.0	0.0	1.45	0.65	0.72	1.03	4.2	0.004	0.68	0.0	0.04	16.54	0.00	2.157	10.29	0.44	4.7	95.3	0.0	1.12	0.39	0.66	0.77	1.03	24628	3372	8	0	0	0	0	logfile
✔	8ENC	28270	2022-12-15	2022-09-29	3.6	4.10	3.52	3.6	0.003	0.57	0.0	0.04	14.18	0.00	1.869	7.16	0.08	3.0	97.0	0.0	1.79	0.60	0.87	1.67	3.7	0.004	0.64	0.0	0.04	15.55	0.00	1.943	9.17	0.12	3.1	96.8	0.0	1.71	0.45	0.61	0.89	1.66	23220	2929	13	0	10	0	0	logfile
✔	8EiQ	28161	2022-12-12	2022-09-15	3.0	2.87	3.05	3.2	0.006	1.06	0.0	0.04	12.41	0.01	1.936	1.40	1.78	1.3	98.7	0.0	-1.39	0.65	0.87	3.70	3.1	0.003	0.53	0.0	0.04	16.27	0.00	1.956	3.47	2.67	2.3	97.7	0.0	0.61	1.10	0.66	0.87	2.43	9578	1162	3	0	25	0	0	logfile
✔	8Eio	28160	2022-12-12	2022-09-15	2.8	2.72	2.98	3.0	0.006	1.04	0.0	0.04	11.61	0.01	1.991	1.14	1.09	1.0	99.0	0.1	-0.27	0.68	0.86	4.04	3.0	0.002	0.51	0.0	0.04	15.91	0.00	2.046	4.31	1.58	2.3	97.7	0.0	1.57	0.89	0.68	0.86	3.07	9550	1162	3	0	25	0	0	logfile
✘	8EiG	28155	2022-12-18	2022-09-15	3.6	2.88	3.69	3.4	0.006	1.04	0.0	0.04	12.67	0.00	1.883	2.08	1.91	2.5	97.4	0.1	-0.77	0.61	0.79	2.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9249	1141	1	0	6	0	0	logfile
✔	8EFQ	28088	2022-12-11	2022-09-08	3.3	3.58	3.24	3.6	0.004	0.81	1.0	0.05	8.64	0.01	2.298	3.26	0.00	1.4	98.6	0.0	-1.52	0.60	0.72	1.55	3.6	0.003	0.63	1.0	0.04	14.07	0.00	2.135	10.29	0.26	2.2	97.8	0.0	0.55	2.72	0.64	0.79	1.63	7046	892	6	0	2	0	0	logfile
✘	8EFo	28086	2022-12-18	2022-09-08	2.8	2.69	2.95	3.0	0.004	0.85	0.0	0.06	8.02	0.01	2.241	5.94	0.00	1.5	98.5	0.0	-0.93	0.59	0.76	3.19	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11708	1441	9	0	12	0	0	logfile
✔	8EFL	28085	2022-12-12	2022-09-08	3.2	3.35	3.03	3.4	0.006	0.92	0.0	0.07	8.25	0.01	2.259	3.80	0.00	1.1	98.9	0.0	0.35	0.62	0.77	2.84	3.3	0.002	0.52	0.0	0.04	13.28	0.00	2.102	6.93	0.08	1.5	98.5	0.0	1.96	0.64	0.62	0.82	2.48	11750	1446	9	0	12	0	0	logfile
✔	8EFi	28083	2022-12-15	2022-09-08	3.4	3.88	3.42	3.5	0.003	0.57	0.0	0.04	14.29	0.00	2.065	7.60	0.04	3.0	97.0	0.0	1.40	0.62	0.87	2.08	3.6	0.002	0.57	0.0	0.04	15.45	0.00	2.051	8.10	0.04	2.8	97.2	0.0	1.53	0.36	0.63	0.89	1.73	23256	2929	13	0	10	0	0	logfile
✔	8EFB	28077	2022-12-12	2022-09-08	3.2	3.04	3.02	3.2	0.007	0.99	0.0	0.06	8.95	0.01	2.247	4.83	0.00	1.8	98.2	0.0	1.18	0.61	0.75	2.06	3.2	0.003	0.58	0.0	0.04	14.70	0.00	2.123	8.82	0.31	1.5	98.5	0.0	1.07	1.35	0.64	0.83	2.83	8947	1136	6	0	1	0	0	logfile
✘	8EF6	28069	2022-12-18	2022-09-08	3.2	2.91	3.02	3.1	0.005	0.87	0.0	0.07	7.72	0.01	2.267	4.07	0.00	1.3	98.7	0.0	0.00	0.59	0.75	2.50	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11686	1439	9	0	12	0	0	logfile
✔	8EF5	28066	2022-12-12	2022-09-08	3.3	2.72	3.17	3.3	0.004	0.88	0.0	0.07	7.98	0.01	2.284	4.11	0.00	1.3	98.7	0.0	0.02	0.73	0.76	2.15	3.4	0.003	0.71	0.0	0.04	15.20	0.00	2.129	12.70	0.48	1.8	98.2	0.0	1.10	0.83	0.76	0.80	1.75	11705	1441	9	0	12	0	0	logfile
✔	8EEY	28065	2022-12-14	2022-09-07	2.53	2.25	2.57	2.5	0.006	0.88	0.0	0.05	15.16	0.01	1.937	0.44	0.14	1.8	98.1	0.0	0.01	0.60	0.80	4.57	2.5	0.005	0.69	0.0	0.05	17.50	0.01	2.146	4.17	2.33	2.6	97.3	0.0	0.73	0.67	0.64	0.87	3.89	20886	2393	6	66	4	0	0	logfile
✔	8EEX	28064	2022-12-13	2022-09-07	2.95	2.88	2.94	3.0	0.006	0.89	0.0	0.05	16.12	0.01	2.173	0.69	0.51	1.8	98.2	0.0	-0.43	0.69	0.83	3.81	3.0	0.003	0.62	0.0	0.04	17.76	0.00	2.150	5.40	1.77	3.0	97.0	0.0	0.55	1.51	0.70	0.87	3.21	17082	2008	4	36	4	0	0	logfile

• ← previous
• Page 4 of 443
• next →