Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8H3E	34465	2023-04-27	2022-10-08	3.06	3.44	3.40	3.3	0.004	0.51	0.0	0.04	16.69	0.00	1.960	8.20	0.22	5.4	94.6	0.0	-2.27	0.81	0.89	2.90	3.3	0.006	0.70	0.0	0.05	16.95	0.00	2.119	1.79	0.07	6.2	93.8	0.0	-1.99	0.90	0.81	0.89	2.79	24957	3159	6	0	18	0	0	logfile
✔	8H3D	34464	2023-04-27	2022-10-08	3.27	3.75	3.39	3.6	0.004	0.59	3.0	0.05	16.86	0.00	2.173	3.86	0.26	6.4	93.6	0.0	-3.11	0.77	0.85	1.54	3.6	0.004	0.59	0.0	0.05	17.06	0.00	2.159	4.04	0.33	6.4	93.6	0.0	-2.76	0.29	0.78	0.87	1.57	24448	3103	6	0	13	0	0	logfile
✔	8H1T	34431	2023-04-24	2022-10-04	3.0	3.40	1.70	3.2	0.003	0.53	0.0	0.04	24.67	0.00	1.336	10.82	0.00	2.2	97.8	0.0	2.26	0.72	0.67	1.40	3.2	0.004	0.65	0.0	0.04	26.64	0.00	2.181	11.69	2.94	3.4	96.6	0.0	1.61	0.68	0.76	0.74	1.42	17365	1323	14	334	0	0	0	logfile
✔	8H1P	34430	2023-04-23	2022-10-03	3.48	3.37	3.43	3.5	0.003	0.56	0.0	0.04	18.45	0.00	2.208	10.09	0.00	0.5	99.5	0.0	0.52	0.71	0.79	0.67	3.5	0.003	0.55	0.0	0.04	17.96	0.00	2.217	8.83	0.36	2.6	97.4	0.0	1.21	0.58	0.69	0.79	1.12	15950	2024	11	0	0	0	0	logfile
✔	8H16	34426	2023-04-26	2022-09-30	3.35534	3.37	3.29	3.4	0.006	0.86	0.0	0.06	13.54	0.01	2.223	3.00	0.00	3.0	97.0	0.0	-0.98	0.75	0.83	3.12	3.4	0.004	0.59	0.0	0.05	14.86	0.00	2.157	4.57	0.38	3.2	96.8	0.0	-0.19	1.40	0.76	0.85	2.83	21934	2754	6	0	32	0	0	logfile
✔	8H15	34425	2023-04-26	2022-09-30	3.14182	3.18	3.11	3.2	0.011	1.03	1.0	0.07	14.04	0.01	2.182	2.84	0.00	5.5	94.5	0.0	-1.79	0.75	0.83	3.70	3.2	0.003	0.56	0.0	0.04	15.17	0.00	2.116	4.02	0.24	3.3	96.7	0.0	0.01	1.39	0.75	0.84	2.78	22813	2888	6	0	18	0	0	logfile
✔	8H14	34424	2023-04-27	2022-09-30	3.39	3.39	3.33	3.4	0.005	0.95	6.0	0.06	13.84	0.01	2.177	2.50	1.35	3.6	96.4	0.0	-0.84	0.78	0.84	2.92	3.4	0.003	0.55	0.0	0.04	14.67	0.00	2.212	3.63	0.41	2.6	97.4	0.0	-0.02	0.39	0.79	0.87	2.92	24750	3087	6	0	45	0	0	logfile
✔	8H13	34423	2023-04-26	2022-09-30	4.05	4.03	4.00	4.0	0.004	0.86	0.0	0.05	14.15	0.01	2.254	3.85	0.83	5.0	95.0	0.0	-1.27	0.76	0.79	—	4.0	0.003	0.61	0.0	0.04	13.89	0.00	2.170	7.72	0.00	4.3	95.7	0.0	-0.28	0.44	0.75	0.77	—	22113	2793	6	0	21	0	0	logfile
✔	8H12	34422	2023-04-26	2022-09-30	3.44681	3.52	3.40	3.5	0.006	0.81	0.0	0.06	13.90	0.01	2.253	2.68	0.00	4.0	96.0	0.0	-2.04	0.71	0.84	3.55	3.5	0.003	0.57	0.0	0.05	15.44	0.00	2.094	4.94	0.23	3.2	96.8	0.0	-0.79	0.33	0.71	0.85	2.97	24221	3022	9	0	45	0	0	logfile
✔	8H11	34421	2023-04-26	2022-09-30	2.72	2.91	2.73	2.9	0.006	0.84	0.0	0.06	12.44	0.01	2.250	2.67	0.04	3.4	96.6	0.0	-1.16	0.79	0.85	3.06	2.9	0.004	0.58	0.0	0.05	14.54	0.00	2.140	4.47	1.33	3.6	96.3	0.0	0.03	0.31	0.80	0.87	2.78	23566	2945	7	0	39	0	0	logfile
✔	8H10	34420	2023-04-27	2022-09-30	2.99	3.22	3.06	3.2	0.008	0.90	0.0	0.05	12.91	0.01	2.304	2.85	0.64	3.1	96.9	0.0	-1.07	0.81	0.85	2.83	3.2	0.002	0.54	0.0	0.04	14.57	0.00	2.225	4.93	1.31	2.8	97.2	0.0	-0.01	0.41	0.82	0.87	2.89	24882	3078	9	0	54	0	0	logfile
✔	8H0Z	34419	2023-04-27	2022-09-30	2.99	3.23	3.00	3.2	0.008	0.92	0.0	0.06	12.49	0.01	2.229	3.18	0.00	4.5	95.5	0.0	-1.47	0.81	0.85	3.39	3.2	0.003	0.57	0.0	0.04	14.16	0.00	2.184	4.84	1.41	3.8	96.2	0.0	-0.53	0.33	0.81	0.87	3.00	25047	3102	9	0	51	0	0	logfile
✔	8H0Y	34418	2023-04-27	2022-09-30	2.85	3.06	2.88	3.0	0.008	0.85	0.0	0.06	13.30	0.01	2.274	2.60	0.00	3.2	96.8	0.0	-1.19	0.81	0.86	3.68	3.0	0.003	0.54	0.0	0.05	14.97	0.00	2.237	4.38	1.57	2.7	97.3	0.0	-0.12	1.14	0.82	0.88	3.26	24999	3094	6	0	52	0	0	logfile
✘	8H0X	34417	2023-04-27	2022-09-30	2.57	2.80	2.62	2.7	0.008	0.93	0.0	0.06	12.74	0.01	2.257	1.76	1.11	3.3	96.7	0.0	-0.82	0.81	0.86	3.97	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25122	3117	6	0	48	0	0	logfile
✔	8GZ7	34391	2023-04-24	2022-09-26	3.5	3.85	3.64	3.8	0.012	1.67	6.0	0.13	24.08	0.01	1.693	4.61	32.81	5.8	93.5	0.7	-1.19	0.62	0.80	3.08	3.8	0.003	0.60	0.0	0.04	17.40	0.00	2.110	7.68	0.37	3.9	95.8	0.3	-0.27	1.83	0.66	0.84	3.30	17474	2136	8	0	0	0	0	logfile
✔	8GZ3	34389	2023-04-20	2022-09-24	3.3	3.13	—	3.1	0.012	1.45	3.0	0.10	13.72	0.01	2.142	5.81	1.74	1.8	98.2	0.0	-0.20	0.63	0.77	2.77	3.1	0.004	0.65	0.0	0.04	14.14	0.00	2.148	6.33	0.16	1.4	98.6	0.0	0.81	1.19	0.71	0.83	3.15	8542	789	7	0	434	1	0	logfile
✔	8GZ2	34388	2023-04-22	2022-09-24	3.3	3.52	3.29	3.6	0.012	0.89	0.0	0.09	14.55	0.00	2.202	12.83	0.16	6.4	93.6	0.0	-0.45	0.58	0.77	2.03	3.6	0.003	0.74	0.0	0.07	16.60	0.00	2.134	11.41	0.55	5.6	94.4	0.0	0.47	0.46	0.57	0.79	1.48	11984	1467	10	0	18	0	0	logfile
✔	8GZ1	34387	2023-04-22	2022-09-24	3.4	3.77	3.44	3.7	0.004	0.68	0.0	0.05	14.29	0.00	1.940	11.26	0.00	5.0	95.0	0.0	0.65	0.55	0.77	2.03	3.7	0.005	0.73	0.0	0.04	16.26	0.00	2.140	10.34	0.78	5.3	94.7	0.0	0.91	0.53	0.57	0.80	1.79	11912	1445	10	0	19	0	0	logfile
✔	8GYX	34379	2023-04-20	2022-09-24	3.7	3.91	3.72	3.9	0.007	1.36	0.0	0.07	15.99	0.01	2.208	6.07	0.30	0.8	99.2	0.0	1.06	0.50	0.76	2.38	3.9	0.004	0.67	0.0	0.04	15.90	0.00	1.447	11.17	0.60	2.1	97.9	0.0	2.78	1.28	0.53	0.79	2.23	6118	760	4	0	6	0	0	logfile
✔	8GYW	34378	2023-04-20	2022-09-24	3.9	3.93	3.77	4.0	0.008	1.46	0.0	0.08	15.18	0.02	2.008	6.48	0.30	0.8	99.2	0.0	1.24	0.46	0.73	1.92	3.9	0.003	0.67	0.0	0.04	16.46	0.00	1.170	13.03	1.21	1.7	98.3	0.0	2.64	1.27	0.50	0.76	0.83	6076	760	4	0	6	0	0	logfile

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