Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XiD	33203	2022-07-06	2022-04-12	3.3	3.75	3.57	3.6	0.008	1.01	2.0	0.08	12.97	0.01	1.822	9.54	1.12	6.0	92.4	1.6	-2.95	0.65	0.62	1.85	3.6	0.009	0.90	0.0	0.05	15.25	0.01	2.148	10.46	0.16	6.8	93.0	0.2	-1.23	1.77	0.71	0.75	1.79	34256	4153	33	0	91	0	0	logfile
✔	7XiC	33202	2022-07-06	2022-04-12	3.3	3.72	3.48	3.6	0.009	1.11	0.0	0.08	11.24	0.01	1.933	11.19	1.40	5.6	92.5	1.8	-2.01	0.67	0.65	1.91	3.6	0.004	0.79	0.0	0.05	13.62	0.00	2.093	7.68	0.28	5.0	94.9	0.1	-0.55	1.43	0.72	0.77	1.85	29941	3706	31	0	71	0	0	logfile
✔	7XD1	33132	2022-07-03	2022-03-26	3.2	2.74	3.19	3.1	0.009	0.87	0.0	0.05	26.97	0.01	2.339	2.86	1.59	1.3	98.7	0.0	-5.83	0.76	0.83	4.00	3.1	0.004	0.61	0.0	0.04	28.48	0.00	2.032	6.87	0.48	2.3	97.7	0.0	1.55	0.48	0.78	0.84	2.74	12048	760	10	294	0	0	0	logfile
✔	7XD0	33131	2022-07-04	2022-03-26	3.48	2.99	—	2.9	0.003	0.57	0.0	0.04	27.19	0.00	2.132	10.17	0.13	2.9	97.1	0.0	1.23	0.82	0.81	1.82	2.9	0.006	0.68	0.0	0.04	28.43	0.00	2.154	11.37	0.65	4.5	95.5	0.0	1.36	0.30	0.83	0.83	1.44	13222	915	12	292	0	0	0	logfile
✘	7XCT	33127	2022-07-05	2022-03-25	2.72	3.02	—	3.0	0.012	1.10	0.0	0.06	22.70	0.01	2.220	3.90	0.59	5.3	94.3	0.4	-5.11	0.73	0.82	3.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18633	1575	16	290	2	0	0	logfile
✔	7XCR	33126	2022-07-04	2022-03-25	2.57	2.86	—	2.8	0.007	0.96	0.0	0.05	23.88	0.01	2.228	4.19	0.90	4.3	95.6	0.2	-4.82	0.76	0.83	4.14	2.8	0.005	0.69	0.0	0.04	26.33	0.00	2.108	8.73	2.50	3.9	95.9	0.2	0.80	0.50	0.74	0.83	3.42	15400	1174	13	292	1	0	0	logfile
✔	7XC6	33113	2022-07-04	2022-03-23	2.79	2.93	2.78	3.0	0.006	0.72	0.0	0.05	17.67	0.00	2.003	7.23	7.75	7.1	92.9	0.0	-2.40	0.63	0.67	0.82	2.9	0.005	0.79	0.0	0.04	18.24	0.00	2.092	8.32	2.05	6.4	93.6	0.0	-0.08	0.81	0.75	0.91	3.41	16176	2026	5	0	0	0	0	logfile
✘	7X9C	33071	2022-07-03	2022-03-15	3.0	3.24	—	3.2	0.002	0.50	0.0	0.04	10.16	0.00	1.182	8.90	0.00	3.2	96.8	0.0	-2.49	0.58	0.71	1.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7219	945	5	0	0	0	0	logfile
✘	7X9B	33070	2022-07-03	2022-03-15	3.4	3.88	—	3.9	0.002	0.51	0.0	0.04	12.11	0.00	1.231	8.93	0.13	4.0	96.0	0.0	-3.52	0.64	0.75	1.20	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7242	946	5	0	0	0	0	logfile
✘	7X9A	33069	2022-07-03	2022-03-15	3.2	3.87	—	3.6	0.002	0.49	0.0	0.04	10.37	0.00	1.229	7.31	0.00	3.0	97.0	0.0	-2.79	0.67	0.69	1.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7156	950	5	0	0	0	0	logfile
✔	7X84	33055	2022-07-03	2022-03-11	3.0	3.07	2.65	3.2	0.008	0.83	0.0	0.06	13.87	0.00	2.259	11.21	0.00	10.3	89.7	0.0	-5.69	0.40	0.84	3.98	3.2	0.004	0.82	0.0	0.05	17.63	0.00	2.117	11.37	2.91	7.0	93.0	0.0	-3.58	2.64	0.38	0.84	3.18	3258	405	3	0	0	0	0	logfile
✔	7X83	33054	2022-07-03	2022-03-11	3.4	3.15	2.87	3.5	0.009	0.82	0.0	0.06	13.35	0.00	2.217	17.05	0.00	15.8	84.2	0.0	-5.71	0.38	0.84	4.55	3.6	0.004	0.69	0.0	0.05	15.07	0.00	2.252	12.90	1.06	11.5	88.5	0.0	-4.93	0.59	0.39	0.84	4.64	3258	405	3	0	0	0	0	logfile
✔	7X7N	33042	2022-07-05	2022-03-10	4.47	4.03	4.49	4.2	0.013	1.04	6.0	0.06	14.74	0.01	1.956	29.19	0.52	19.6	80.3	0.1	-5.63	0.73	0.77	—	4.1	0.003	0.75	6.0	0.05	14.25	0.00	2.058	13.88	0.00	9.5	90.5	0.0	-2.57	0.77	0.72	0.76	—	26493	3314	12	0	45	0	0	logfile
✔	7X6o	33024	2022-07-05	2022-03-07	3.5	2.65	—	3.8	0.002	0.48	0.0	0.04	8.09	0.00	2.283	3.29	1.82	2.0	98.0	0.0	-3.07	0.60	0.53	0.73	2.1	0.008	1.03	1.0	0.05	12.91	0.01	2.072	18.35	0.50	4.8	95.2	0.0	-1.04	1.58	0.64	0.59	1.03	21609	2787	12	0	0	0	0	logfile
✔	7X6L	33023	2022-07-05	2022-03-07	3.7	2.76	—	2.2	0.002	0.45	0.0	0.04	7.43	0.00	2.291	4.69	2.04	1.9	97.9	0.2	-3.07	0.64	0.56	0.95	2.2	0.004	0.85	0.0	0.05	13.89	0.01	2.048	19.43	0.42	4.2	95.6	0.1	-1.53	1.02	0.67	0.62	1.07	21486	2781	12	0	0	0	0	logfile
✔	7X5V	33016	2022-07-03	2022-03-05	2.83	3.04	—	3.1	0.007	0.87	1.0	0.05	14.75	0.01	1.891	19.22	1.40	5.7	94.3	0.0	-2.31	0.57	0.77	2.65	3.1	0.003	0.61	0.0	0.04	16.68	0.00	2.117	10.70	2.61	4.2	95.8	0.0	1.33	1.59	0.58	0.79	2.66	9504	1176	5	0	0	0	0	logfile
✘	7X2U	32971	2022-07-03	2022-02-26	3.2	2.92	—	3.1	0.010	0.85	0.0	0.05	15.98	0.00	1.178	11.60	0.94	3.6	96.4	0.0	-0.82	0.68	0.85	3.46	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11861	1451	6	0	12	0	0	logfile
✔	7X2F	32966	2022-07-03	2022-02-25	3.0	3.70	—	3.6	0.006	0.83	2.0	0.05	12.82	0.01	2.164	13.60	0.11	3.2	96.8	0.0	-0.87	0.58	0.73	2.55	3.6	0.003	0.58	0.0	0.04	15.75	0.00	2.159	8.79	1.70	2.1	97.9	0.0	0.71	0.45	0.52	0.69	2.03	8249	1036	6	0	4	0	0	logfile
✘	7X2D	32965	2022-07-03	2022-02-25	3.3	3.43	—	3.5	0.004	0.82	1.0	0.05	14.41	0.01	1.165	12.28	0.57	3.0	97.0	0.0	-0.46	0.64	0.79	2.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8203	1032	6	0	2	0	0	logfile
✔	7X08	32920	2022-07-07	2022-02-21	2.7	2.78	—	2.8	0.009	0.94	0.0	0.10	16.94	0.01	1.910	14.38	10.68	8.4	90.6	0.9	-2.76	0.63	0.76	2.77	2.7	0.005	0.72	0.0	0.05	16.61	0.00	2.172	6.14	4.06	6.0	93.8	0.1	-0.88	0.68	0.69	0.83	2.95	36396	4572	36	0	81	0	0	logfile

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