Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7NPU	12521	2023-04-26	2021-02-28	4.48	4.74	4.43	3.8	0.008	1.19	0.0	0.06	11.87	0.01	2.086	1.37	0.37	1.8	98.1	0.1	-0.61	0.66	0.68	—	3.8	0.003	0.60	0.0	0.04	12.55	0.00	1.902	8.02	0.00	2.8	97.2	0.0	1.44	3.28	0.69	0.76	—	126727	8230	24	0	0	0	64397	logfile
✔	5T6R	8368	2023-04-26	2016-09-01	4.2	4.31	4.24	4.2	0.007	1.05	1.0	0.09	16.99	0.00	1.229	1.49	5.55	7.5	90.6	1.9	-3.58	0.82	0.80	—	4.2	0.003	0.60	0.0	0.03	15.58	0.00	1.858	10.94	0.02	6.5	93.0	0.5	-1.08	1.57	0.83	0.80	—	126616	6441	51	3483	299	12	0	logfile
✔	6WKV	21810	2023-04-26	2020-04-17	2.99	2.74	—	2.9	0.012	0.66	0.0	0.06	16.80	0.00	2.116	10.99	3.10	6.7	93.3	0.0	-4.68	0.81	0.85	3.88	2.9	0.004	0.61	0.0	0.04	18.38	0.00	2.132	4.53	1.55	3.0	97.0	0.0	-0.48	1.16	0.82	0.87	3.03	126600	15420	108	0	60	0	0	logfile
✔	6AZ3	7025	2023-04-26	2017-09-09	2.5	3.08	—	3.1	0.012	1.29	0.0	0.06	16.54	0.03	1.349	4.53	0.96	6.4	93.4	0.2	-4.53	0.54	0.78	5.15	3.1	0.006	0.88	0.0	0.04	17.29	0.01	1.945	8.72	3.08	6.3	93.6	0.1	-1.41	0.34	0.54	0.80	3.89	126561	6390	91	3507	44	1019	0	logfile
✔	3J9K	2870	2023-04-26	2015-02-04	4.1	4.22	—	4.1	0.022	2.13	128.0	0.13	20.83	0.01	1.058	99.51	29.75	12.8	86.2	1.0	-3.18	0.68	0.68	—	4.1	0.003	0.77	0.0	0.04	13.66	0.00	2.071	16.76	0.01	5.4	94.5	0.2	-1.08	1.15	0.69	0.70	—	126512	10352	48	0	8304	0	0	logfile
✘	8APB	15564	2023-04-27	2022-08-09	3.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	126495	7873	61	0	36	0	62392	logfile
✘	8APD	15566	2023-04-27	2022-08-09	3.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	126495	7873	60	0	36	0	62392	logfile
✘	8APC	15565	2023-04-27	2022-08-09	3.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	126495	7873	59	0	36	0	62392	logfile
✘	8APA	15563	2023-04-27	2022-08-09	3.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	126495	7873	60	0	36	0	62392	logfile
✘	8APE	15567	2023-04-27	2022-08-09	3.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	126495	7873	60	0	36	0	62392	logfile
✘	8APK	15573	2023-04-27	2022-08-09	3.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	126493	7873	61	0	36	0	62392	logfile
✘	8APJ	15572	2023-04-27	2022-08-09	3.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	126490	7873	60	0	36	0	62387	logfile
✘	8APF	15568	2023-04-27	2022-08-09	4.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	126490	7873	60	0	36	0	62387	logfile
✘	8APG	15570	2023-04-27	2022-08-09	3.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	126490	7873	61	0	36	0	62387	logfile
✘	8APH	15571	2023-04-27	2022-08-09	3.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	126490	7873	60	0	36	0	62387	logfile
✔	5T7V	8369	2023-04-25	2016-09-06	3.6	3.63	—	3.6	0.008	0.98	0.0	0.05	16.93	0.01	2.118	3.79	0.38	11.8	88.1	0.1	-5.19	0.74	0.75	3.17	3.6	0.003	0.62	0.0	0.04	17.05	0.00	2.040	8.94	0.79	9.9	90.0	0.0	-3.48	1.20	0.76	0.79	2.26	126001	4152	44	4375	17	0	0	logfile
✔	6ZQA	11357	2023-04-26	2020-07-09	4.4	4.48	—	4.4	0.006	1.11	1.0	0.06	14.62	0.01	1.928	5.28	0.00	9.3	90.4	0.3	-3.27	0.77	0.74	—	4.4	0.011	1.41	0.0	0.06	16.91	0.01	1.638	24.83	0.00	20.3	79.5	0.2	-3.96	1.34	0.76	0.75	—	125991	19047	63	1485	5	0	0	logfile
✔	7YLA	33904	2023-04-25	2022-07-25	2.52	2.04	2.52	1.6	0.006	0.71	0.0	0.04	14.58	0.01	1.980	8.85	0.75	4.3	95.5	0.3	-0.94	0.81	0.81	3.97	1.6	0.007	0.66	0.0	0.04	15.01	0.01	1.842	11.07	1.04	4.6	95.3	0.1	-0.79	1.10	0.83	0.84	3.60	125784	3775	36	2994	6	0	32052	logfile
✔	4V91	2599	2023-04-25	2014-03-21	3.7	3.84	—	3.8	0.133	4.77	525.0	0.43	20.66	0.07	0.695	17.94	12.79	14.1	78.2	7.8	-5.39	0.33	0.36	0.15	3.8	0.032	1.24	0.0	0.04	17.28	0.01	2.047	15.07	1.04	8.1	91.2	0.7	-2.72	2.02	0.63	0.81	1.43	125665	6450	45	3482	0	0	0	logfile
✔	7ASo	11902	2023-04-25	2020-10-27	3.11	3.89	—	3.0	0.007	1.05	3.0	0.10	22.66	0.00	1.837	24.01	13.50	22.1	76.1	1.9	-5.91	0.58	0.45	0.91	3.0	0.007	0.76	0.0	0.04	20.66	0.00	1.997	20.14	1.06	13.0	86.9	0.1	-3.51	1.41	0.87	0.86	1.38	125530	4741	47	4249	0	0	0	logfile

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