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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7oF4 | 12869 | 2022-12-19 | 2021-05-04 | 2.7 | 3.33 | 2.71 | 3.0 | 0.004 | 0.55 | 0.0 | 0.04 | 14.91 | 0.01 | 1.751 | 5.04 | 0.00 | 3.2 | 96.8 | 0.0 | 1.20 | 0.90 | 0.89 | 3.72 | 3.0 | 0.005 | 0.66 | 0.0 | 0.04 | 16.19 | 0.00 | 1.797 | 10.70 | 1.31 | 2.9 | 97.1 | 0.0 | 1.10 | 1.18 | 0.90 | 0.89 | 3.20 | 100322 | 8320 | 60 | 1519 | 95 | 0 | 0 | logfile |
✔ | 7oF6 | 12871 | 2022-12-19 | 2021-05-04 | 2.6 | 3.23 | 2.55 | 2.9 | 0.003 | 0.53 | 0.0 | 0.04 | 14.86 | 0.01 | 1.785 | 4.26 | 0.01 | 3.0 | 97.0 | 0.0 | 1.49 | 0.90 | 0.89 | 3.82 | 2.9 | 0.007 | 0.71 | 0.0 | 0.04 | 16.30 | 0.01 | 1.773 | 10.31 | 1.35 | 3.2 | 96.8 | 0.0 | 1.04 | 0.53 | 0.90 | 0.90 | 3.53 | 100321 | 8320 | 61 | 1519 | 94 | 0 | 0 | logfile |
✔ | 6i9R | 4434 | 2022-12-19 | 2018-11-25 | 3.9 | 4.02 | 3.89 | 4.0 | 0.005 | 0.62 | 0.0 | 0.05 | 13.42 | 0.01 | 1.512 | 3.67 | 0.01 | 3.8 | 96.1 | 0.0 | -3.40 | 0.79 | 0.81 | 1.34 | 3.9 | 0.003 | 0.73 | 0.0 | 0.04 | 16.36 | 0.01 | 1.126 | 15.85 | 0.76 | 4.6 | 95.4 | 0.0 | -0.43 | 1.75 | 0.82 | 0.86 | 1.50 | 100274 | 8198 | 62 | 1562 | 139 | 0 | 0 | logfile |
✘ | 6X36 | 22019 | 2022-12-19 | 2020-05-21 | 4.7 | 4.72 | 5.52 | 4.6 | 0.002 | 0.53 | 0.0 | 0.03 | 10.40 | 0.00 | 2.228 | 5.93 | 0.00 | 2.2 | 97.8 | 0.0 | 0.96 | 0.76 | 0.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 100164 | 13692 | 12 | 0 | 1376 | 0 | 0 | logfile |
✔ | 7S0S | 24792 | 2022-12-17 | 2021-08-31 | 3.05 | 3.10 | — | 3.1 | 0.008 | 0.83 | 0.0 | 0.05 | 16.21 | 0.01 | 1.722 | 9.88 | 1.24 | 6.2 | 93.8 | 0.0 | -1.73 | 0.58 | 0.66 | 0.70 | 3.1 | 0.006 | 0.70 | 0.0 | 0.04 | 16.36 | 0.01 | 1.071 | 9.57 | 0.61 | 5.8 | 94.2 | 0.0 | -1.41 | 0.97 | 0.70 | 0.85 | 2.56 | 100057 | 3946 | 46 | 3236 | 407 | 0 | 0 | logfile |
✔ | 7MFM | 23817 | 2022-12-19 | 2021-04-10 | 2.42 | 3.06 | — | 2.9 | 0.018 | 0.82 | 0.0 | 0.30 | 17.88 | 0.00 | 1.938 | 6.24 | 2.10 | 5.1 | 94.8 | 0.1 | 1.25 | 0.64 | 0.84 | 3.33 | 2.9 | 0.004 | 0.89 | 0.0 | 0.07 | 17.74 | 0.00 | 1.500 | 7.84 | 1.95 | 5.3 | 94.6 | 0.1 | 0.76 | 0.35 | 0.61 | 0.83 | 3.46 | 100025 | 6406 | 14 | 0 | 10 | 0 | 49785 | logfile |
✔ | 6EM1 | 3893 | 2022-12-17 | 2017-10-01 | 3.6 | 3.71 | — | 3.6 | 0.009 | 1.37 | 48.0 | 0.11 | 18.65 | 0.01 | 0.990 | 8.34 | 9.41 | 9.4 | 87.5 | 3.1 | -4.15 | 0.79 | 0.83 | 1.48 | 3.5 | 0.008 | 0.82 | 0.0 | 0.04 | 18.37 | 0.01 | 1.991 | 20.07 | 0.62 | 8.7 | 91.0 | 0.3 | -1.57 | 3.37 | 0.79 | 0.82 | 1.39 | 99980 | 7072 | 45 | 2008 | 2 | 0 | 0 | logfile |
✔ | 5VFR | 8665 | 2022-12-17 | 2017-04-09 | 4.9 | 5.02 | — | 4.8 | 0.006 | 1.24 | 5.0 | 0.07 | 11.75 | 0.01 | 2.042 | 10.75 | 0.74 | 9.6 | 89.8 | 0.6 | -4.40 | 0.71 | 0.63 | — | 4.8 | 0.005 | 0.90 | 0.0 | 0.05 | 13.15 | 0.01 | 1.948 | 27.37 | 0.05 | 11.6 | 88.4 | 0.1 | -2.06 | 1.48 | 0.72 | 0.70 | — | 99908 | 12868 | 51 | 0 | 5 | 0 | 0 | logfile |
✘ | 7DVQ | 30875 | 2022-12-19 | 2021-01-14 | 2.89 | 3.02 | — | 3.0 | 0.021 | 1.37 | 11.0 | 0.10 | 13.65 | 0.01 | 1.987 | 12.32 | 3.57 | 3.7 | 96.2 | 0.1 | -1.62 | 0.63 | 0.81 | 3.37 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 99906 | 13326 | 57 | 276 | 17 | 3 | 0 | logfile |
✔ | 3J9Q | 6270 | 2022-12-19 | 2015-02-17 | 3.5 | 3.51 | — | 3.5 | 0.008 | 1.16 | 0.0 | 0.06 | 14.05 | 0.00 | 2.284 | 4.67 | 8.68 | 19.1 | 75.1 | 5.8 | -5.24 | 0.60 | 0.82 | 2.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 99648 | 13224 | 48 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oiE | 12927 | 2022-12-17 | 2021-05-11 | 3.5 | 3.25 | — | 3.2 | 0.016 | 1.44 | 1.0 | 0.08 | 17.11 | 0.01 | 2.055 | 8.25 | 0.03 | 6.6 | 93.3 | 0.0 | -2.20 | 0.72 | 0.75 | 3.05 | 3.2 | 0.003 | 0.64 | 0.0 | 0.04 | 17.31 | 0.00 | 2.052 | 11.88 | 0.25 | 4.5 | 95.5 | 0.0 | -0.41 | 0.44 | 0.70 | 0.73 | 2.25 | 99578 | 8217 | 60 | 1528 | 5 | 0 | 0 | logfile |
✘ | 7oF0 | 12865 | 2022-12-19 | 2021-05-04 | 2.2 | 3.01 | 2.23 | 2.8 | 0.005 | 0.59 | 0.0 | 0.04 | 14.90 | 0.00 | 1.851 | 7.50 | 0.08 | 2.7 | 97.3 | 0.0 | 1.19 | 0.86 | 0.87 | 3.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 99476 | 8446 | 62 | 1432 | 64 | 0 | 0 | logfile |
✔ | 6U7M | 20673 | 2022-12-17 | 2019-09-03 | 3.8 | 4.00 | — | 4.0 | 0.004 | 0.78 | 0.0 | 0.05 | 9.33 | 0.01 | 2.321 | 2.88 | 0.27 | 8.3 | 91.7 | 0.0 | -4.11 | 0.57 | 0.81 | 2.42 | 4.0 | 0.003 | 0.66 | 0.0 | 0.04 | 13.58 | 0.00 | 2.089 | 8.24 | 0.19 | 6.6 | 93.4 | 0.0 | -1.96 | 2.05 | 0.58 | 0.83 | 2.34 | 99420 | 12510 | 30 | 0 | 0 | 0 | 0 | logfile |
✔ | 8ETG | 24397 | 2022-12-17 | 2022-10-17 | 3.4 | 3.34 | — | 3.2 | 0.004 | 0.54 | 0.0 | 0.04 | 16.64 | 0.00 | 2.066 | 12.64 | 0.58 | 4.8 | 95.1 | 0.1 | -0.31 | 0.60 | 0.53 | 0.47 | 3.2 | 0.006 | 0.77 | 0.0 | 0.04 | 17.26 | 0.01 | 1.974 | 17.34 | 0.77 | 5.1 | 94.8 | 0.1 | -0.24 | 1.02 | 0.69 | 0.68 | 1.34 | 99257 | 7394 | 49 | 2226 | 1 | 0 | 0 | logfile |
✔ | 5ZVS | 6968 | 2022-12-19 | 2018-05-12 | 3.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 99250 | 12872 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7CBL | 30335 | 2022-12-19 | 2020-06-12 | 2.8 | 3.16 | — | 3.1 | 0.006 | 0.59 | 0.0 | 0.05 | 14.82 | 0.00 | 2.161 | 5.24 | 5.25 | 3.0 | 96.8 | 0.2 | -2.55 | 0.78 | 0.87 | 2.70 | 3.1 | 0.004 | 0.58 | 0.0 | 0.05 | 16.34 | 0.00 | 2.143 | 6.01 | 4.46 | 3.1 | 96.9 | 0.0 | -0.49 | 0.42 | 0.74 | 0.87 | 2.58 | 99242 | 13364 | 78 | 0 | 26 | 0 | 0 | logfile |
✔ | 6TZ4 | 20588 | 2022-12-19 | 2019-08-10 | 3.2 | 3.81 | 3.16 | 3.7 | 0.010 | 0.48 | 0.0 | 0.04 | 8.47 | 0.00 | 2.212 | 3.95 | 0.00 | 1.4 | 98.6 | 0.0 | -0.10 | 0.51 | 0.57 | 0.03 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 99216 | 12852 | 72 | 0 | 0 | 0 | 0 | logfile |
✘ | 5ooL | 3842 | 2022-12-19 | 2017-08-08 | 3.06 | 5.10 | 3.10 | 4.9 | 0.009 | 1.05 | 2.0 | 0.06 | 14.15 | 0.01 | 0.037 | 6.41 | 0.54 | 5.0 | 94.9 | 0.1 | -3.52 | 0.77 | 0.61 | 0.86 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 98998 | 8198 | 66 | 1497 | 124 | 0 | 0 | logfile |
✘ | 5XNL | 6741 | 2022-12-19 | 2017-05-23 | 2.7 | 2.75 | — | 2.8 | 0.013 | 1.60 | 0.0 | 0.09 | 15.86 | 0.02 | 1.207 | 10.25 | 0.08 | 2.1 | 97.9 | 0.0 | -3.12 | 0.55 | 0.78 | 3.96 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 98986 | 9364 | 136 | 0 | 490 | 1076 | 0 | logfile |
✘ | 8ADL | 15364 | 2022-12-19 | 2022-07-08 | 2.95 | 2.79 | 3.17 | 2.1 | 0.003 | 0.59 | 0.0 | 0.05 | 13.45 | 0.01 | 2.230 | 4.54 | 0.00 | 3.4 | 96.6 | 0.0 | -1.37 | 0.73 | 0.71 | 1.51 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 98972 | 12238 | 30 | 0 | 28 | 0 | 0 | logfile |