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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7NPU | 12521 | 2023-04-26 | 2021-02-28 | 4.48 | 4.74 | 4.43 | 3.8 | 0.008 | 1.19 | 0.0 | 0.06 | 11.87 | 0.01 | 2.086 | 1.37 | 0.37 | 1.8 | 98.1 | 0.1 | -0.61 | 0.66 | 0.68 | — | 3.8 | 0.003 | 0.60 | 0.0 | 0.04 | 12.55 | 0.00 | 1.902 | 8.02 | 0.00 | 2.8 | 97.2 | 0.0 | 1.44 | 3.28 | 0.69 | 0.76 | — | 126727 | 8230 | 24 | 0 | 0 | 0 | 64397 | logfile |
✔ | 5T6R | 8368 | 2023-04-26 | 2016-09-01 | 4.2 | 4.31 | 4.24 | 4.2 | 0.007 | 1.05 | 1.0 | 0.09 | 16.99 | 0.00 | 1.229 | 1.49 | 5.55 | 7.5 | 90.6 | 1.9 | -3.58 | 0.82 | 0.80 | — | 4.2 | 0.003 | 0.60 | 0.0 | 0.03 | 15.58 | 0.00 | 1.858 | 10.94 | 0.02 | 6.5 | 93.0 | 0.5 | -1.08 | 1.57 | 0.83 | 0.80 | — | 126616 | 6441 | 51 | 3483 | 299 | 12 | 0 | logfile |
✔ | 6WKV | 21810 | 2023-04-26 | 2020-04-17 | 2.99 | 2.74 | — | 2.9 | 0.012 | 0.66 | 0.0 | 0.06 | 16.80 | 0.00 | 2.116 | 10.99 | 3.10 | 6.7 | 93.3 | 0.0 | -4.68 | 0.81 | 0.85 | 3.88 | 2.9 | 0.004 | 0.61 | 0.0 | 0.04 | 18.38 | 0.00 | 2.132 | 4.53 | 1.55 | 3.0 | 97.0 | 0.0 | -0.48 | 1.16 | 0.82 | 0.87 | 3.03 | 126600 | 15420 | 108 | 0 | 60 | 0 | 0 | logfile |
✔ | 6AZ3 | 7025 | 2023-04-26 | 2017-09-09 | 2.5 | 3.08 | — | 3.1 | 0.012 | 1.29 | 0.0 | 0.06 | 16.54 | 0.03 | 1.349 | 4.53 | 0.96 | 6.4 | 93.4 | 0.2 | -4.53 | 0.54 | 0.78 | 5.15 | 3.1 | 0.006 | 0.88 | 0.0 | 0.04 | 17.29 | 0.01 | 1.945 | 8.72 | 3.08 | 6.3 | 93.6 | 0.1 | -1.41 | 0.34 | 0.54 | 0.80 | 3.89 | 126561 | 6390 | 91 | 3507 | 44 | 1019 | 0 | logfile |
✔ | 3J9K | 2870 | 2023-04-26 | 2015-02-04 | 4.1 | 4.22 | — | 4.1 | 0.022 | 2.13 | 128.0 | 0.13 | 20.83 | 0.01 | 1.058 | 99.51 | 29.75 | 12.8 | 86.2 | 1.0 | -3.18 | 0.68 | 0.68 | — | 4.1 | 0.003 | 0.77 | 0.0 | 0.04 | 13.66 | 0.00 | 2.071 | 16.76 | 0.01 | 5.4 | 94.5 | 0.2 | -1.08 | 1.15 | 0.69 | 0.70 | — | 126512 | 10352 | 48 | 0 | 8304 | 0 | 0 | logfile |
✘ | 8APB | 15564 | 2023-04-27 | 2022-08-09 | 3.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 126495 | 7873 | 61 | 0 | 36 | 0 | 62392 | logfile |
✘ | 8APD | 15566 | 2023-04-27 | 2022-08-09 | 3.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 126495 | 7873 | 60 | 0 | 36 | 0 | 62392 | logfile |
✘ | 8APC | 15565 | 2023-04-27 | 2022-08-09 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 126495 | 7873 | 59 | 0 | 36 | 0 | 62392 | logfile |
✘ | 8APA | 15563 | 2023-04-27 | 2022-08-09 | 3.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 126495 | 7873 | 60 | 0 | 36 | 0 | 62392 | logfile |
✘ | 8APE | 15567 | 2023-04-27 | 2022-08-09 | 3.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 126495 | 7873 | 60 | 0 | 36 | 0 | 62392 | logfile |
✘ | 8APK | 15573 | 2023-04-27 | 2022-08-09 | 3.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 126493 | 7873 | 61 | 0 | 36 | 0 | 62392 | logfile |
✘ | 8APJ | 15572 | 2023-04-27 | 2022-08-09 | 3.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 126490 | 7873 | 60 | 0 | 36 | 0 | 62387 | logfile |
✘ | 8APF | 15568 | 2023-04-27 | 2022-08-09 | 4.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 126490 | 7873 | 60 | 0 | 36 | 0 | 62387 | logfile |
✘ | 8APG | 15570 | 2023-04-27 | 2022-08-09 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 126490 | 7873 | 61 | 0 | 36 | 0 | 62387 | logfile |
✘ | 8APH | 15571 | 2023-04-27 | 2022-08-09 | 3.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 126490 | 7873 | 60 | 0 | 36 | 0 | 62387 | logfile |
✔ | 5T7V | 8369 | 2023-04-25 | 2016-09-06 | 3.6 | 3.63 | — | 3.6 | 0.008 | 0.98 | 0.0 | 0.05 | 16.93 | 0.01 | 2.118 | 3.79 | 0.38 | 11.8 | 88.1 | 0.1 | -5.19 | 0.74 | 0.75 | 3.17 | 3.6 | 0.003 | 0.62 | 0.0 | 0.04 | 17.05 | 0.00 | 2.040 | 8.94 | 0.79 | 9.9 | 90.0 | 0.0 | -3.48 | 1.20 | 0.76 | 0.79 | 2.26 | 126001 | 4152 | 44 | 4375 | 17 | 0 | 0 | logfile |
✔ | 6ZQA | 11357 | 2023-04-26 | 2020-07-09 | 4.4 | 4.48 | — | 4.4 | 0.006 | 1.11 | 1.0 | 0.06 | 14.62 | 0.01 | 1.928 | 5.28 | 0.00 | 9.3 | 90.4 | 0.3 | -3.27 | 0.77 | 0.74 | — | 4.4 | 0.011 | 1.41 | 0.0 | 0.06 | 16.91 | 0.01 | 1.638 | 24.83 | 0.00 | 20.3 | 79.5 | 0.2 | -3.96 | 1.34 | 0.76 | 0.75 | — | 125991 | 19047 | 63 | 1485 | 5 | 0 | 0 | logfile |
✔ | 7YLA | 33904 | 2023-04-25 | 2022-07-25 | 2.52 | 2.04 | 2.52 | 1.6 | 0.006 | 0.71 | 0.0 | 0.04 | 14.58 | 0.01 | 1.980 | 8.85 | 0.75 | 4.3 | 95.5 | 0.3 | -0.94 | 0.81 | 0.81 | 3.97 | 1.6 | 0.007 | 0.66 | 0.0 | 0.04 | 15.01 | 0.01 | 1.842 | 11.07 | 1.04 | 4.6 | 95.3 | 0.1 | -0.79 | 1.10 | 0.83 | 0.84 | 3.60 | 125784 | 3775 | 36 | 2994 | 6 | 0 | 32052 | logfile |
✔ | 4V91 | 2599 | 2023-04-25 | 2014-03-21 | 3.7 | 3.84 | — | 3.8 | 0.133 | 4.77 | 525.0 | 0.43 | 20.66 | 0.07 | 0.695 | 17.94 | 12.79 | 14.1 | 78.2 | 7.8 | -5.39 | 0.33 | 0.36 | 0.15 | 3.8 | 0.032 | 1.24 | 0.0 | 0.04 | 17.28 | 0.01 | 2.047 | 15.07 | 1.04 | 8.1 | 91.2 | 0.7 | -2.72 | 2.02 | 0.63 | 0.81 | 1.43 | 125665 | 6450 | 45 | 3482 | 0 | 0 | 0 | logfile |
✔ | 7ASo | 11902 | 2023-04-25 | 2020-10-27 | 3.11 | 3.89 | — | 3.0 | 0.007 | 1.05 | 3.0 | 0.10 | 22.66 | 0.00 | 1.837 | 24.01 | 13.50 | 22.1 | 76.1 | 1.9 | -5.91 | 0.58 | 0.45 | 0.91 | 3.0 | 0.007 | 0.76 | 0.0 | 0.04 | 20.66 | 0.00 | 1.997 | 20.14 | 1.06 | 13.0 | 86.9 | 0.1 | -3.51 | 1.41 | 0.87 | 0.86 | 1.38 | 125530 | 4741 | 47 | 4249 | 0 | 0 | 0 | logfile |