Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7oF4	12869	2022-12-19	2021-05-04	2.7	3.33	2.71	3.0	0.004	0.55	0.0	0.04	14.91	0.01	1.751	5.04	0.00	3.2	96.8	0.0	1.20	0.90	0.89	3.72	3.0	0.005	0.66	0.0	0.04	16.19	0.00	1.797	10.70	1.31	2.9	97.1	0.0	1.10	1.18	0.90	0.89	3.20	100322	8320	60	1519	95	0	0	logfile
✔	7oF6	12871	2022-12-19	2021-05-04	2.6	3.23	2.55	2.9	0.003	0.53	0.0	0.04	14.86	0.01	1.785	4.26	0.01	3.0	97.0	0.0	1.49	0.90	0.89	3.82	2.9	0.007	0.71	0.0	0.04	16.30	0.01	1.773	10.31	1.35	3.2	96.8	0.0	1.04	0.53	0.90	0.90	3.53	100321	8320	61	1519	94	0	0	logfile
✔	6i9R	4434	2022-12-19	2018-11-25	3.9	4.02	3.89	4.0	0.005	0.62	0.0	0.05	13.42	0.01	1.512	3.67	0.01	3.8	96.1	0.0	-3.40	0.79	0.81	1.34	3.9	0.003	0.73	0.0	0.04	16.36	0.01	1.126	15.85	0.76	4.6	95.4	0.0	-0.43	1.75	0.82	0.86	1.50	100274	8198	62	1562	139	0	0	logfile
✘	6X36	22019	2022-12-19	2020-05-21	4.7	4.72	5.52	4.6	0.002	0.53	0.0	0.03	10.40	0.00	2.228	5.93	0.00	2.2	97.8	0.0	0.96	0.76	0.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	100164	13692	12	0	1376	0	0	logfile
✔	7S0S	24792	2022-12-17	2021-08-31	3.05	3.10	—	3.1	0.008	0.83	0.0	0.05	16.21	0.01	1.722	9.88	1.24	6.2	93.8	0.0	-1.73	0.58	0.66	0.70	3.1	0.006	0.70	0.0	0.04	16.36	0.01	1.071	9.57	0.61	5.8	94.2	0.0	-1.41	0.97	0.70	0.85	2.56	100057	3946	46	3236	407	0	0	logfile
✔	7MFM	23817	2022-12-19	2021-04-10	2.42	3.06	—	2.9	0.018	0.82	0.0	0.30	17.88	0.00	1.938	6.24	2.10	5.1	94.8	0.1	1.25	0.64	0.84	3.33	2.9	0.004	0.89	0.0	0.07	17.74	0.00	1.500	7.84	1.95	5.3	94.6	0.1	0.76	0.35	0.61	0.83	3.46	100025	6406	14	0	10	0	49785	logfile
✔	6EM1	3893	2022-12-17	2017-10-01	3.6	3.71	—	3.6	0.009	1.37	48.0	0.11	18.65	0.01	0.990	8.34	9.41	9.4	87.5	3.1	-4.15	0.79	0.83	1.48	3.5	0.008	0.82	0.0	0.04	18.37	0.01	1.991	20.07	0.62	8.7	91.0	0.3	-1.57	3.37	0.79	0.82	1.39	99980	7072	45	2008	2	0	0	logfile
✔	5VFR	8665	2022-12-17	2017-04-09	4.9	5.02	—	4.8	0.006	1.24	5.0	0.07	11.75	0.01	2.042	10.75	0.74	9.6	89.8	0.6	-4.40	0.71	0.63	—	4.8	0.005	0.90	0.0	0.05	13.15	0.01	1.948	27.37	0.05	11.6	88.4	0.1	-2.06	1.48	0.72	0.70	—	99908	12868	51	0	5	0	0	logfile
✘	7DVQ	30875	2022-12-19	2021-01-14	2.89	3.02	—	3.0	0.021	1.37	11.0	0.10	13.65	0.01	1.987	12.32	3.57	3.7	96.2	0.1	-1.62	0.63	0.81	3.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	99906	13326	57	276	17	3	0	logfile
✔	3J9Q	6270	2022-12-19	2015-02-17	3.5	3.51	—	3.5	0.008	1.16	0.0	0.06	14.05	0.00	2.284	4.67	8.68	19.1	75.1	5.8	-5.24	0.60	0.82	2.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	99648	13224	48	0	0	0	0	logfile
✔	7oiE	12927	2022-12-17	2021-05-11	3.5	3.25	—	3.2	0.016	1.44	1.0	0.08	17.11	0.01	2.055	8.25	0.03	6.6	93.3	0.0	-2.20	0.72	0.75	3.05	3.2	0.003	0.64	0.0	0.04	17.31	0.00	2.052	11.88	0.25	4.5	95.5	0.0	-0.41	0.44	0.70	0.73	2.25	99578	8217	60	1528	5	0	0	logfile
✘	7oF0	12865	2022-12-19	2021-05-04	2.2	3.01	2.23	2.8	0.005	0.59	0.0	0.04	14.90	0.00	1.851	7.50	0.08	2.7	97.3	0.0	1.19	0.86	0.87	3.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	99476	8446	62	1432	64	0	0	logfile
✔	6U7M	20673	2022-12-17	2019-09-03	3.8	4.00	—	4.0	0.004	0.78	0.0	0.05	9.33	0.01	2.321	2.88	0.27	8.3	91.7	0.0	-4.11	0.57	0.81	2.42	4.0	0.003	0.66	0.0	0.04	13.58	0.00	2.089	8.24	0.19	6.6	93.4	0.0	-1.96	2.05	0.58	0.83	2.34	99420	12510	30	0	0	0	0	logfile
✔	8ETG	24397	2022-12-17	2022-10-17	3.4	3.34	—	3.2	0.004	0.54	0.0	0.04	16.64	0.00	2.066	12.64	0.58	4.8	95.1	0.1	-0.31	0.60	0.53	0.47	3.2	0.006	0.77	0.0	0.04	17.26	0.01	1.974	17.34	0.77	5.1	94.8	0.1	-0.24	1.02	0.69	0.68	1.34	99257	7394	49	2226	1	0	0	logfile
✔	5ZVS	6968	2022-12-19	2018-05-12	3.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	99250	12872	12	0	0	0	0	logfile
✔	7CBL	30335	2022-12-19	2020-06-12	2.8	3.16	—	3.1	0.006	0.59	0.0	0.05	14.82	0.00	2.161	5.24	5.25	3.0	96.8	0.2	-2.55	0.78	0.87	2.70	3.1	0.004	0.58	0.0	0.05	16.34	0.00	2.143	6.01	4.46	3.1	96.9	0.0	-0.49	0.42	0.74	0.87	2.58	99242	13364	78	0	26	0	0	logfile
✔	6TZ4	20588	2022-12-19	2019-08-10	3.2	3.81	3.16	3.7	0.010	0.48	0.0	0.04	8.47	0.00	2.212	3.95	0.00	1.4	98.6	0.0	-0.10	0.51	0.57	0.03	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	99216	12852	72	0	0	0	0	logfile
✘	5ooL	3842	2022-12-19	2017-08-08	3.06	5.10	3.10	4.9	0.009	1.05	2.0	0.06	14.15	0.01	0.037	6.41	0.54	5.0	94.9	0.1	-3.52	0.77	0.61	0.86	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	98998	8198	66	1497	124	0	0	logfile
✘	5XNL	6741	2022-12-19	2017-05-23	2.7	2.75	—	2.8	0.013	1.60	0.0	0.09	15.86	0.02	1.207	10.25	0.08	2.1	97.9	0.0	-3.12	0.55	0.78	3.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	98986	9364	136	0	490	1076	0	logfile
✘	8ADL	15364	2022-12-19	2022-07-08	2.95	2.79	3.17	2.1	0.003	0.59	0.0	0.05	13.45	0.01	2.230	4.54	0.00	3.4	96.6	0.0	-1.37	0.73	0.71	1.51	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	98972	12238	30	0	28	0	0	logfile

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