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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6PCR | 20305 | 2022-12-14 | 2019-06-18 | 2.5 | 3.04 | — | 2.9 | 0.010 | 0.51 | 0.0 | 0.03 | 12.78 | 0.02 | 1.808 | 2.74 | 2.36 | 5.2 | 94.6 | 0.2 | -3.36 | 0.72 | 0.89 | 4.33 | 2.9 | 0.006 | 0.65 | 0.0 | 0.04 | 13.75 | 0.01 | 1.918 | 6.25 | 2.49 | 5.2 | 94.7 | 0.1 | -1.27 | 0.26 | 0.72 | 0.91 | 4.45 | 72166 | 967 | 8 | 3015 | 1 | 0 | 0 | logfile |
✔ | 6PCT | 20307 | 2022-12-14 | 2019-06-18 | 2.8 | 3.01 | — | 2.9 | 0.006 | 0.41 | 2.0 | 0.03 | 12.70 | 0.02 | 1.891 | 2.99 | 2.50 | 6.3 | 93.6 | 0.1 | -3.70 | 0.66 | 0.85 | 4.28 | 2.9 | 0.004 | 0.60 | 0.0 | 0.03 | 14.49 | 0.01 | 2.104 | 8.47 | 4.34 | 6.0 | 93.9 | 0.1 | -0.86 | 0.93 | 0.67 | 0.88 | 4.41 | 72198 | 964 | 8 | 3015 | 1 | 0 | 0 | logfile |
✔ | 6PC8 | 20299 | 2022-12-14 | 2019-06-16 | 2.9 | 3.26 | — | 3.1 | 0.006 | 0.48 | 0.0 | 0.03 | 12.75 | 0.02 | 1.931 | 3.26 | 2.62 | 7.2 | 92.7 | 0.1 | -4.11 | 0.71 | 0.86 | 3.45 | 3.1 | 0.004 | 0.62 | 0.0 | 0.03 | 14.59 | 0.01 | 2.115 | 8.86 | 4.32 | 8.2 | 91.7 | 0.1 | -1.66 | 0.45 | 0.72 | 0.88 | 3.21 | 72169 | 967 | 8 | 3015 | 1 | 0 | 0 | logfile |
✔ | 6PCH | 20300 | 2022-12-14 | 2019-06-17 | 2.9 | 3.23 | — | 3.1 | 0.005 | 0.38 | 0.0 | 0.02 | 12.69 | 0.02 | 1.702 | 3.92 | 2.23 | 7.9 | 92.0 | 0.1 | -4.23 | 0.61 | 0.79 | 3.30 | 3.1 | 0.007 | 0.80 | 0.0 | 0.04 | 15.51 | 0.01 | 1.964 | 12.18 | 5.52 | 9.8 | 90.0 | 0.2 | -2.28 | 0.50 | 0.63 | 0.83 | 2.45 | 72134 | 964 | 8 | 3015 | 1 | 0 | 0 | logfile |
✔ | 6V3D | 21033 | 2022-12-16 | 2019-11-25 | 2.95 | 3.39 | — | 3.2 | 0.002 | 0.49 | 0.0 | 0.03 | 14.48 | 0.01 | 1.698 | 5.98 | 0.04 | 2.8 | 97.1 | 0.1 | -1.93 | 0.85 | 0.86 | 2.47 | 3.2 | 0.007 | 0.71 | 0.0 | 0.04 | 15.95 | 0.01 | 1.748 | 7.82 | 3.49 | 4.7 | 95.2 | 0.1 | -0.89 | 1.18 | 0.86 | 0.90 | 2.61 | 89040 | 3117 | 45 | 3007 | 108 | 231 | 0 | logfile |
✔ | 5GAE | 8001 | 2022-12-17 | 2015-11-25 | 3.33 | 3.45 | — | 3.3 | 0.007 | 0.94 | 0.0 | 0.04 | 14.78 | 0.00 | 1.884 | 5.72 | 5.36 | 3.0 | 96.9 | 0.1 | -2.76 | 0.79 | 0.88 | 2.24 | 3.3 | 0.006 | 0.66 | 0.0 | 0.04 | 15.13 | 0.00 | 1.797 | 12.60 | 0.92 | 4.0 | 95.9 | 0.1 | -0.05 | 1.54 | 0.79 | 0.89 | 2.23 | 95192 | 3886 | 41 | 3007 | 349 | 0 | 0 | logfile |
✔ | 6S0K | 10073 | 2022-12-17 | 2019-06-17 | 3.1 | 3.25 | — | 3.2 | 0.005 | 0.78 | 1.0 | 0.04 | 14.55 | 0.01 | 2.070 | 4.25 | 0.73 | 4.3 | 95.4 | 0.3 | -3.18 | 0.74 | 0.86 | 2.55 | 3.2 | 0.006 | 0.64 | 0.0 | 0.04 | 15.16 | 0.00 | 1.858 | 11.20 | 0.79 | 5.8 | 94.1 | 0.1 | -0.68 | 0.46 | 0.75 | 0.88 | 2.23 | 98708 | 4387 | 39 | 3006 | 69 | 0 | 0 | logfile |
✔ | 6SPB | 10280 | 2022-12-16 | 2019-09-01 | 2.82 | 2.91 | — | 2.9 | 0.015 | 1.31 | 1.0 | 0.07 | 17.70 | 0.01 | 1.887 | 5.27 | 1.01 | 11.3 | 88.6 | 0.1 | -4.29 | 0.79 | 0.86 | 3.81 | 2.9 | 0.007 | 0.68 | 0.0 | 0.04 | 17.65 | 0.01 | 1.914 | 11.01 | 3.30 | 9.3 | 90.7 | 0.0 | -2.01 | 1.60 | 0.80 | 0.87 | 2.95 | 90362 | 3383 | 32 | 3002 | 0 | 0 | 0 | logfile |
✔ | 7AS9 | 11890 | 2022-12-16 | 2020-10-27 | 3.5 | 4.52 | 3.51 | 4.2 | 0.007 | 0.98 | 0.0 | 0.05 | 17.12 | 0.01 | 1.976 | 8.28 | 0.07 | 13.0 | 86.6 | 0.4 | -4.86 | 0.92 | 0.83 | 0.18 | 4.2 | 0.006 | 0.86 | 0.0 | 0.04 | 18.30 | 0.01 | 1.959 | 38.41 | 1.06 | 12.4 | 87.5 | 0.1 | -2.90 | 0.73 | 0.92 | 0.84 | 0.28 | 93137 | 3720 | 32 | 2999 | 0 | 0 | 0 | logfile |
✘ | 7AS8 | 11889 | 2022-12-19 | 2020-10-27 | 2.9 | 3.61 | 2.93 | 3.1 | 0.011 | 0.94 | 0.0 | 0.05 | 15.51 | 0.01 | 1.949 | 4.15 | 0.03 | 8.7 | 91.2 | 0.2 | -3.78 | 0.91 | 0.90 | 3.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 93801 | 3810 | 33 | 2997 | 0 | 0 | 0 | logfile |
✔ | 7oPE | 13017 | 2022-12-17 | 2021-05-31 | 3.2 | 5.30 | 3.21 | 5.0 | 0.011 | 1.04 | 2.0 | 0.06 | 15.48 | 0.01 | 1.028 | 4.88 | 0.23 | 8.2 | 91.6 | 0.2 | -3.62 | 0.89 | 0.72 | -0.03 | 5.0 | 0.005 | 0.81 | 0.0 | 0.04 | 17.65 | 0.01 | 1.985 | 36.74 | 1.51 | 9.0 | 90.9 | 0.1 | -1.91 | 1.82 | 0.93 | 0.88 | 0.28 | 93862 | 3818 | 33 | 2996 | 0 | 0 | 0 | logfile |
✔ | 3J7Z | 6057 | 2022-12-16 | 2014-08-27 | 3.9 | 3.80 | — | 3.9 | 0.009 | 1.42 | 5.0 | 0.10 | 15.56 | 0.01 | 1.426 | 11.71 | 10.91 | 16.3 | 77.2 | 6.5 | -5.00 | 0.75 | 0.70 | 0.71 | 3.8 | 0.006 | 0.88 | 0.0 | 0.05 | 15.92 | 0.01 | 1.948 | 18.48 | 1.83 | 14.0 | 83.9 | 2.1 | -3.23 | 1.86 | 0.79 | 0.80 | 0.90 | 90700 | 3453 | 36 | 2975 | 1 | 0 | 0 | logfile |
✔ | 6SPD | 10282 | 2022-12-16 | 2019-09-01 | 3.28 | 3.35 | — | 3.3 | 0.010 | 1.16 | 0.0 | 0.06 | 18.38 | 0.01 | 0.400 | 15.54 | 1.26 | 12.2 | 87.1 | 0.7 | -5.12 | 0.66 | 0.50 | 0.28 | 3.3 | 0.008 | 0.86 | 0.0 | 0.05 | 17.63 | 0.01 | 1.960 | 9.82 | 0.87 | 12.2 | 87.7 | 0.1 | -3.18 | 2.06 | 0.87 | 0.87 | 1.94 | 90352 | 3458 | 32 | 2967 | 0 | 0 | 0 | logfile |
✔ | 5MLC | 3525 | 2022-12-16 | 2016-12-06 | 3.6 | 2.75 | — | 3.8 | 0.008 | 1.22 | 6.0 | 0.11 | 18.65 | 0.01 | 1.443 | 4.02 | 6.93 | 11.5 | 85.5 | 3.0 | -4.19 | 0.79 | 0.83 | 1.64 | 3.7 | 0.006 | 0.80 | 0.0 | 0.04 | 17.49 | 0.01 | 1.975 | 14.42 | 1.30 | 11.5 | 88.0 | 0.6 | -2.31 | 1.23 | 0.76 | 0.80 | 1.51 | 90647 | 3422 | 32 | 2963 | 0 | 0 | 0 | logfile |
✔ | 6HMA | 0243 | 2022-12-16 | 2018-09-12 | 2.65 | 2.72 | 2.61 | 2.7 | 0.012 | 1.00 | 0.0 | 0.06 | 13.74 | 0.01 | 1.546 | 2.32 | 0.00 | 7.3 | 92.7 | 0.0 | -4.23 | 0.49 | 0.72 | 4.01 | 2.7 | 0.008 | 0.84 | 0.0 | 0.04 | 15.44 | 0.01 | 1.841 | 5.24 | 5.00 | 6.7 | 93.3 | 0.0 | -1.60 | 1.30 | 0.71 | 0.87 | 3.50 | 86401 | 3039 | 36 | 2949 | 237 | 0 | 0 | logfile |
✔ | 7ASM | 11900 | 2022-12-16 | 2020-10-27 | 2.48 | 2.98 | — | 2.8 | 0.010 | 0.84 | 0.0 | 0.05 | 14.78 | 0.01 | 2.012 | 5.47 | 0.65 | 7.3 | 92.3 | 0.4 | -3.05 | 0.89 | 0.91 | 4.54 | 2.8 | 0.005 | 0.65 | 0.0 | 0.04 | 15.00 | 0.01 | 2.064 | 5.40 | 2.29 | 6.6 | 93.3 | 0.1 | -0.90 | 0.30 | 0.85 | 0.92 | 3.87 | 86149 | 3036 | 30 | 2949 | 1 | 0 | 0 | logfile |
✔ | 8AP4 | 15558 | 2022-12-16 | 2022-08-09 | 3.0 | 2.99 | 2.97 | 3.1 | 0.007 | 0.80 | 0.0 | 0.05 | 14.44 | 0.02 | 1.999 | 4.10 | 1.62 | 3.6 | 96.3 | 0.1 | -0.03 | 0.86 | 0.88 | 2.78 | 3.1 | 0.006 | 0.67 | 0.0 | 0.04 | 14.60 | 0.01 | 2.039 | 10.53 | 3.16 | 4.1 | 95.9 | 0.0 | -0.37 | 0.88 | 0.86 | 0.88 | 2.59 | 88614 | 3266 | 33 | 2940 | 0 | 0 | 0 | logfile |
✔ | 6GBZ | 4378 | 2022-12-16 | 2018-04-16 | 3.8 | 4.02 | — | 3.9 | 0.002 | 0.61 | 0.0 | 0.03 | 13.32 | 0.00 | 2.235 | 2.87 | 0.08 | 6.2 | 93.4 | 0.3 | -4.24 | 0.72 | 0.67 | 1.01 | 3.9 | 0.005 | 0.72 | 0.0 | 0.04 | 15.83 | 0.01 | 1.983 | 19.65 | 1.04 | 10.8 | 89.1 | 0.1 | -2.14 | 0.88 | 0.78 | 0.77 | 1.03 | 86401 | 3074 | 29 | 2908 | 0 | 0 | 0 | logfile |
✔ | 5T5H | 8361 | 2022-12-19 | 2016-08-31 | 2.54 | 2.84 | — | 2.9 | 0.015 | 1.25 | 1.0 | 0.06 | 16.68 | 0.04 | 0.838 | 36.92 | 0.69 | 5.4 | 93.4 | 1.2 | -2.36 | 0.64 | 0.82 | 3.92 | 2.9 | 0.005 | 0.91 | 0.0 | 0.04 | 17.62 | 0.01 | 1.804 | 15.55 | 3.14 | 3.9 | 96.0 | 0.1 | -0.59 | 2.19 | 0.61 | 0.83 | 3.15 | 105112 | 5369 | 74 | 2884 | 108 | 83 | 0 | logfile |
✔ | 6WU9 | 21907 | 2022-12-15 | 2020-05-04 | 2.9 | 2.24 | — | 2.7 | 0.011 | 1.15 | 0.0 | 0.06 | 16.56 | 0.01 | 1.989 | 5.75 | 16.81 | 10.7 | 88.9 | 0.3 | -3.84 | 0.70 | 0.84 | 3.27 | 2.7 | 0.008 | 0.93 | 0.0 | 0.05 | 16.18 | 0.01 | 1.922 | 5.25 | 8.00 | 9.4 | 90.5 | 0.1 | -1.89 | 1.59 | 0.71 | 0.87 | 2.99 | 82295 | 2697 | 30 | 2855 | 3 | 0 | 0 | logfile |