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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6WDA | 21629 | 2024-03-01 | 2020-03-31 | 3.8 | 4.14 | 4.11 | 3.9 | 0.006 | 0.93 | 0.0 | 0.08 | 22.01 | 0.01 | 1.314 | 10.79 | 0.69 | 10.6 | 87.8 | 1.6 | -4.79 | 0.84 | 0.82 | 0.86 | 3.9 | 0.005 | 0.74 | 0.0 | 0.04 | 23.49 | 0.01 | 2.007 | 25.67 | 6.64 | 10.7 | 89.2 | 0.1 | -2.40 | 0.71 | 0.86 | 0.83 | 0.58 | 152933 | 6373 | 62 | 4811 | 0 | 0 | 0 | logfile |
✔ | 6WD9 | 21628 | 2024-03-01 | 2020-03-31 | 3.7 | 4.05 | 4.07 | 3.9 | 0.006 | 0.94 | 0.0 | 0.08 | 22.07 | 0.01 | 1.313 | 11.26 | 0.54 | 10.7 | 87.6 | 1.7 | -4.88 | 0.83 | 0.82 | 1.03 | 3.9 | 0.006 | 0.78 | 0.0 | 0.04 | 23.53 | 0.01 | 1.976 | 26.89 | 6.96 | 11.6 | 88.2 | 0.2 | -2.51 | 0.70 | 0.85 | 0.83 | 0.69 | 152927 | 6371 | 62 | 4811 | 0 | 0 | 0 | logfile |
✔ | 5UYL | 8616 | 2024-03-02 | 2017-02-24 | 3.6 | 4.27 | 7.95 | 3.6 | 0.010 | 1.06 | 0.0 | 0.09 | 22.37 | 0.01 | 1.339 | 12.65 | 1.12 | 12.2 | 85.6 | 2.2 | -4.96 | 0.89 | 0.82 | 1.34 | 3.6 | 0.005 | 0.77 | 3.0 | 0.04 | 23.61 | 0.01 | 1.708 | 26.51 | 5.83 | 11.8 | 88.0 | 0.1 | -2.59 | 1.98 | 0.90 | 0.86 | 1.11 | 153753 | 6476 | 63 | 4810 | 1 | 0 | 0 | logfile |
✔ | 6WDM | 21641 | 2024-03-26 | 2020-03-31 | 3.6 | 3.93 | 3.85 | 3.8 | 0.006 | 0.96 | 0.0 | 0.08 | 21.96 | 0.01 | 1.315 | 8.41 | 0.61 | 10.3 | 88.0 | 1.7 | -4.77 | 0.82 | 0.83 | 1.11 | 3.8 | 0.007 | 0.88 | 4.0 | 0.04 | 23.52 | 0.01 | 1.820 | 27.88 | 7.82 | 11.8 | 88.0 | 0.2 | -2.57 | 0.68 | 0.84 | 0.85 | 1.08 | 150220 | 6025 | 58 | 4810 | 0 | 0 | 0 | logfile |
✔ | 6WD2 | 21621 | 2024-03-01 | 2020-03-31 | 3.6 | 3.97 | 4.00 | 3.8 | 0.006 | 0.94 | 0.0 | 0.08 | 22.08 | 0.01 | 1.315 | 11.11 | 0.44 | 10.6 | 87.8 | 1.6 | -4.77 | 0.83 | 0.83 | 0.92 | 3.8 | 0.006 | 0.79 | 0.0 | 0.04 | 23.39 | 0.01 | 2.008 | 25.33 | 7.30 | 11.4 | 88.4 | 0.1 | -2.46 | 1.49 | 0.84 | 0.84 | 0.74 | 153282 | 6417 | 62 | 4810 | 1 | 0 | 0 | logfile |
✔ | 5UYQ | 8620 | 2024-03-02 | 2017-02-24 | 3.8 | 4.28 | 4.16 | 3.7 | 0.007 | 1.05 | 0.0 | 0.09 | 22.52 | 0.01 | 1.314 | 14.34 | 1.29 | 13.9 | 83.4 | 2.7 | -5.24 | 0.86 | 0.79 | 0.45 | 3.5 | 0.005 | 0.78 | 1.0 | 0.04 | 23.98 | 0.01 | 1.096 | 30.27 | 5.43 | 13.4 | 86.4 | 0.2 | -3.16 | 0.73 | 0.87 | 0.82 | 0.42 | 153759 | 6476 | 63 | 4810 | 2 | 0 | 0 | logfile |
✔ | 6WDJ | 21638 | 2024-03-26 | 2020-03-31 | 3.7 | 4.11 | 4.20 | 4.0 | 0.006 | 0.96 | 0.0 | 0.08 | 21.93 | 0.01 | 2.162 | 8.59 | 0.41 | 11.0 | 87.3 | 1.7 | -4.77 | 0.81 | 0.81 | 1.03 | 4.0 | 0.004 | 0.69 | 0.0 | 0.04 | 23.43 | 0.01 | 2.045 | 22.79 | 6.81 | 10.1 | 89.8 | 0.1 | -2.48 | 1.51 | 0.83 | 0.83 | 0.62 | 150211 | 6024 | 59 | 4810 | 0 | 0 | 0 | logfile |
✔ | 6WDL | 21640 | 2024-03-26 | 2020-03-31 | 3.7 | 4.08 | 4.12 | 4.0 | 0.006 | 0.97 | 0.0 | 0.08 | 21.94 | 0.01 | 1.312 | 9.22 | 0.41 | 10.7 | 87.5 | 1.9 | -4.85 | 0.81 | 0.81 | 1.06 | 4.0 | 0.004 | 0.69 | 0.0 | 0.04 | 23.36 | 0.01 | 1.986 | 21.13 | 6.46 | 10.0 | 89.8 | 0.2 | -2.23 | 1.50 | 0.83 | 0.83 | 0.83 | 150220 | 6025 | 60 | 4810 | 0 | 0 | 0 | logfile |
✔ | 5UYM | 8617 | 2024-03-02 | 2017-02-24 | 3.2 | 4.16 | 3.27 | 3.2 | 0.007 | 1.00 | 0.0 | 0.08 | 22.19 | 0.01 | 1.331 | 12.54 | 1.17 | 11.5 | 86.5 | 2.0 | -5.21 | 0.91 | 0.82 | 2.50 | 3.2 | 0.005 | 0.68 | 0.0 | 0.04 | 22.98 | 0.00 | 1.782 | 18.57 | 5.35 | 10.1 | 89.7 | 0.2 | -1.76 | 1.78 | 0.95 | 0.91 | 1.83 | 154139 | 6476 | 72 | 4810 | 386 | 0 | 0 | logfile |
✔ | 6WDE | 21633 | 2024-03-26 | 2020-03-31 | 3.0 | 3.35 | 3.25 | 3.2 | 0.006 | 0.94 | 0.0 | 0.08 | 22.16 | 0.01 | 1.309 | 10.30 | 0.96 | 10.3 | 87.8 | 1.9 | -4.88 | 0.80 | 0.84 | 1.82 | 3.2 | 0.005 | 0.70 | 0.0 | 0.04 | 23.13 | 0.01 | 1.948 | 15.83 | 5.27 | 9.2 | 90.6 | 0.2 | -2.31 | 1.46 | 0.81 | 0.86 | 1.51 | 150220 | 6025 | 58 | 4810 | 0 | 0 | 0 | logfile |
✔ | 6BU8 | 7289 | 2024-03-27 | 2017-12-08 | 3.5 | 4.67 | — | 3.7 | 0.006 | 0.91 | 0.0 | 0.08 | 21.95 | 0.01 | 2.239 | 17.31 | 0.70 | 14.8 | 81.8 | 3.4 | -5.26 | 0.91 | 0.87 | 0.88 | 3.7 | 0.003 | 0.66 | 0.0 | 0.03 | 23.43 | 0.00 | 1.956 | 21.91 | 4.30 | 9.2 | 90.5 | 0.3 | -1.78 | 1.42 | 0.91 | 0.88 | 0.72 | 152151 | 6272 | 61 | 4810 | 0 | 0 | 0 | logfile |
✔ | 6WD8 | 21627 | 2024-03-01 | 2020-03-31 | 3.7 | 4.07 | 4.18 | 3.9 | 0.006 | 0.96 | 0.0 | 0.08 | 22.11 | 0.01 | 1.315 | 12.60 | 0.80 | 11.4 | 86.9 | 1.7 | -4.88 | 0.83 | 0.81 | 1.18 | 3.9 | 0.006 | 0.82 | 0.0 | 0.04 | 23.68 | 0.01 | 2.029 | 30.42 | 7.27 | 12.1 | 87.8 | 0.1 | -2.70 | 1.51 | 0.85 | 0.83 | 0.82 | 153212 | 6409 | 62 | 4810 | 1 | 0 | 0 | logfile |
✔ | 6WDD | 21632 | 2024-03-26 | 2020-03-31 | 3.2 | 3.43 | 3.52 | 3.3 | 0.006 | 0.92 | 0.0 | 0.08 | 22.16 | 0.01 | 1.327 | 10.51 | 0.49 | 10.6 | 87.7 | 1.7 | -4.87 | 0.79 | 0.82 | 1.59 | 3.3 | 0.005 | 0.70 | 0.0 | 0.04 | 23.19 | 0.01 | 2.032 | 17.22 | 5.89 | 9.7 | 90.1 | 0.2 | -2.32 | 0.59 | 0.81 | 0.85 | 1.23 | 150222 | 6025 | 60 | 4810 | 0 | 0 | 0 | logfile |
✔ | 6WDK | 21639 | 2024-03-26 | 2020-03-31 | 3.6 | 3.94 | 3.93 | 3.8 | 0.006 | 0.95 | 0.0 | 0.08 | 21.91 | 0.01 | 1.311 | 8.08 | 0.51 | 11.0 | 87.2 | 1.8 | -4.81 | 0.82 | 0.82 | 1.17 | 3.8 | 0.004 | 0.70 | 0.0 | 0.04 | 23.36 | 0.01 | 2.024 | 20.66 | 6.19 | 10.1 | 89.7 | 0.2 | -2.42 | 1.52 | 0.83 | 0.83 | 1.02 | 150222 | 6025 | 60 | 4810 | 0 | 0 | 0 | logfile |
✔ | 6WD7 | 21626 | 2024-03-27 | 2020-03-31 | 3.9 | 4.24 | 4.25 | 4.1 | 0.006 | 0.98 | 0.0 | 0.08 | 21.85 | 0.01 | 2.166 | 9.61 | 0.62 | 11.7 | 86.5 | 1.9 | -4.81 | 0.81 | 0.80 | 0.76 | 4.0 | 0.006 | 0.78 | 0.0 | 0.04 | 23.68 | 0.01 | 2.026 | 30.15 | 7.73 | 11.3 | 88.6 | 0.1 | -2.80 | 1.55 | 0.84 | 0.83 | 0.64 | 150887 | 6113 | 60 | 4809 | 0 | 0 | 0 | logfile |
✔ | 5UYN | 8618 | 2024-03-02 | 2017-02-24 | 4.0 | 4.51 | 4.60 | 3.6 | 0.007 | 1.03 | 0.0 | 0.09 | 22.35 | 0.01 | 2.337 | 13.33 | 1.31 | 13.9 | 83.2 | 2.9 | -5.06 | 0.86 | 0.79 | — | 3.6 | 0.005 | 0.77 | 2.0 | 0.04 | 24.01 | 0.01 | 1.714 | 31.27 | 5.35 | 12.9 | 86.8 | 0.3 | -2.94 | 1.42 | 0.86 | 0.81 | — | 153717 | 6474 | 60 | 4809 | 1 | 0 | 0 | logfile |
✔ | 6WDB | 21630 | 2024-03-26 | 2020-03-31 | 4.0 | 4.30 | 5.11 | 4.1 | 0.006 | 0.99 | 0.0 | 0.08 | 21.96 | 0.01 | 2.211 | 11.44 | 0.77 | 11.9 | 86.2 | 1.9 | -4.97 | 0.78 | 0.72 | — | 4.1 | 0.004 | 0.81 | 0.0 | 0.04 | 24.35 | 0.01 | 2.000 | 33.03 | 5.89 | 12.2 | 87.7 | 0.2 | -3.28 | 0.91 | 0.81 | 0.77 | — | 150149 | 6024 | 59 | 4807 | 0 | 0 | 0 | logfile |
✔ | 6WDH | 21636 | 2024-03-26 | 2020-03-31 | 4.3 | 3.96 | 5.24 | 3.9 | 0.006 | 1.00 | 0.0 | 0.08 | 21.93 | 0.01 | 2.227 | 11.41 | 1.02 | 12.5 | 85.3 | 2.1 | -4.94 | 0.74 | 0.68 | — | 3.8 | 0.005 | 0.74 | 0.0 | 0.04 | 23.08 | 0.01 | 2.024 | 22.62 | 0.04 | 10.8 | 89.1 | 0.1 | -2.55 | 1.38 | 0.82 | 0.82 | — | 150149 | 6024 | 59 | 4807 | 0 | 0 | 0 | logfile |
✔ | 6WDi | 21637 | 2024-03-25 | 2020-03-31 | 4.0 | 4.30 | 4.79 | 4.1 | 0.006 | 0.98 | 0.0 | 0.08 | 21.91 | 0.01 | 2.280 | 9.88 | 0.49 | 12.5 | 85.9 | 1.6 | -4.84 | 0.77 | 0.71 | — | 4.1 | 0.007 | 1.06 | 1.0 | 0.05 | 24.31 | 0.01 | 1.778 | 49.66 | 6.99 | 15.3 | 84.6 | 0.1 | -3.63 | 0.87 | 0.81 | 0.76 | — | 149628 | 5954 | 59 | 4807 | 0 | 0 | 0 | logfile |
✔ | 6WDC | 21631 | 2024-03-26 | 2020-03-31 | 4.2 | 4.07 | 4.55 | 3.9 | 0.006 | 1.01 | 0.0 | 0.08 | 22.00 | 0.01 | 2.262 | 11.85 | 1.14 | 13.3 | 84.6 | 2.1 | -5.10 | 0.77 | 0.73 | — | 3.9 | 0.005 | 0.83 | 0.0 | 0.04 | 23.70 | 0.01 | 1.973 | 31.36 | 0.08 | 13.4 | 86.5 | 0.1 | -3.35 | 1.58 | 0.80 | 0.77 | — | 150149 | 6024 | 59 | 4807 | 0 | 0 | 0 | logfile |