Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6PCR	20305	2022-12-14	2019-06-18	2.5	3.04	—	2.9	0.010	0.51	0.0	0.03	12.78	0.02	1.808	2.74	2.36	5.2	94.6	0.2	-3.36	0.72	0.89	4.33	2.9	0.006	0.65	0.0	0.04	13.75	0.01	1.918	6.25	2.49	5.2	94.7	0.1	-1.27	0.26	0.72	0.91	4.45	72166	967	8	3015	1	0	0	logfile
✔	6PCT	20307	2022-12-14	2019-06-18	2.8	3.01	—	2.9	0.006	0.41	2.0	0.03	12.70	0.02	1.891	2.99	2.50	6.3	93.6	0.1	-3.70	0.66	0.85	4.28	2.9	0.004	0.60	0.0	0.03	14.49	0.01	2.104	8.47	4.34	6.0	93.9	0.1	-0.86	0.93	0.67	0.88	4.41	72198	964	8	3015	1	0	0	logfile
✔	6PC8	20299	2022-12-14	2019-06-16	2.9	3.26	—	3.1	0.006	0.48	0.0	0.03	12.75	0.02	1.931	3.26	2.62	7.2	92.7	0.1	-4.11	0.71	0.86	3.45	3.1	0.004	0.62	0.0	0.03	14.59	0.01	2.115	8.86	4.32	8.2	91.7	0.1	-1.66	0.45	0.72	0.88	3.21	72169	967	8	3015	1	0	0	logfile
✔	6PCH	20300	2022-12-14	2019-06-17	2.9	3.23	—	3.1	0.005	0.38	0.0	0.02	12.69	0.02	1.702	3.92	2.23	7.9	92.0	0.1	-4.23	0.61	0.79	3.30	3.1	0.007	0.80	0.0	0.04	15.51	0.01	1.964	12.18	5.52	9.8	90.0	0.2	-2.28	0.50	0.63	0.83	2.45	72134	964	8	3015	1	0	0	logfile
✔	6V3D	21033	2022-12-16	2019-11-25	2.95	3.39	—	3.2	0.002	0.49	0.0	0.03	14.48	0.01	1.698	5.98	0.04	2.8	97.1	0.1	-1.93	0.85	0.86	2.47	3.2	0.007	0.71	0.0	0.04	15.95	0.01	1.748	7.82	3.49	4.7	95.2	0.1	-0.89	1.18	0.86	0.90	2.61	89040	3117	45	3007	108	231	0	logfile
✔	5GAE	8001	2022-12-17	2015-11-25	3.33	3.45	—	3.3	0.007	0.94	0.0	0.04	14.78	0.00	1.884	5.72	5.36	3.0	96.9	0.1	-2.76	0.79	0.88	2.24	3.3	0.006	0.66	0.0	0.04	15.13	0.00	1.797	12.60	0.92	4.0	95.9	0.1	-0.05	1.54	0.79	0.89	2.23	95192	3886	41	3007	349	0	0	logfile
✔	6S0K	10073	2022-12-17	2019-06-17	3.1	3.25	—	3.2	0.005	0.78	1.0	0.04	14.55	0.01	2.070	4.25	0.73	4.3	95.4	0.3	-3.18	0.74	0.86	2.55	3.2	0.006	0.64	0.0	0.04	15.16	0.00	1.858	11.20	0.79	5.8	94.1	0.1	-0.68	0.46	0.75	0.88	2.23	98708	4387	39	3006	69	0	0	logfile
✔	6SPB	10280	2022-12-16	2019-09-01	2.82	2.91	—	2.9	0.015	1.31	1.0	0.07	17.70	0.01	1.887	5.27	1.01	11.3	88.6	0.1	-4.29	0.79	0.86	3.81	2.9	0.007	0.68	0.0	0.04	17.65	0.01	1.914	11.01	3.30	9.3	90.7	0.0	-2.01	1.60	0.80	0.87	2.95	90362	3383	32	3002	0	0	0	logfile
✔	7AS9	11890	2022-12-16	2020-10-27	3.5	4.52	3.51	4.2	0.007	0.98	0.0	0.05	17.12	0.01	1.976	8.28	0.07	13.0	86.6	0.4	-4.86	0.92	0.83	0.18	4.2	0.006	0.86	0.0	0.04	18.30	0.01	1.959	38.41	1.06	12.4	87.5	0.1	-2.90	0.73	0.92	0.84	0.28	93137	3720	32	2999	0	0	0	logfile
✘	7AS8	11889	2022-12-19	2020-10-27	2.9	3.61	2.93	3.1	0.011	0.94	0.0	0.05	15.51	0.01	1.949	4.15	0.03	8.7	91.2	0.2	-3.78	0.91	0.90	3.32	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	93801	3810	33	2997	0	0	0	logfile
✔	7oPE	13017	2022-12-17	2021-05-31	3.2	5.30	3.21	5.0	0.011	1.04	2.0	0.06	15.48	0.01	1.028	4.88	0.23	8.2	91.6	0.2	-3.62	0.89	0.72	-0.03	5.0	0.005	0.81	0.0	0.04	17.65	0.01	1.985	36.74	1.51	9.0	90.9	0.1	-1.91	1.82	0.93	0.88	0.28	93862	3818	33	2996	0	0	0	logfile
✔	3J7Z	6057	2022-12-16	2014-08-27	3.9	3.80	—	3.9	0.009	1.42	5.0	0.10	15.56	0.01	1.426	11.71	10.91	16.3	77.2	6.5	-5.00	0.75	0.70	0.71	3.8	0.006	0.88	0.0	0.05	15.92	0.01	1.948	18.48	1.83	14.0	83.9	2.1	-3.23	1.86	0.79	0.80	0.90	90700	3453	36	2975	1	0	0	logfile
✔	6SPD	10282	2022-12-16	2019-09-01	3.28	3.35	—	3.3	0.010	1.16	0.0	0.06	18.38	0.01	0.400	15.54	1.26	12.2	87.1	0.7	-5.12	0.66	0.50	0.28	3.3	0.008	0.86	0.0	0.05	17.63	0.01	1.960	9.82	0.87	12.2	87.7	0.1	-3.18	2.06	0.87	0.87	1.94	90352	3458	32	2967	0	0	0	logfile
✔	5MLC	3525	2022-12-16	2016-12-06	3.6	2.75	—	3.8	0.008	1.22	6.0	0.11	18.65	0.01	1.443	4.02	6.93	11.5	85.5	3.0	-4.19	0.79	0.83	1.64	3.7	0.006	0.80	0.0	0.04	17.49	0.01	1.975	14.42	1.30	11.5	88.0	0.6	-2.31	1.23	0.76	0.80	1.51	90647	3422	32	2963	0	0	0	logfile
✔	6HMA	0243	2022-12-16	2018-09-12	2.65	2.72	2.61	2.7	0.012	1.00	0.0	0.06	13.74	0.01	1.546	2.32	0.00	7.3	92.7	0.0	-4.23	0.49	0.72	4.01	2.7	0.008	0.84	0.0	0.04	15.44	0.01	1.841	5.24	5.00	6.7	93.3	0.0	-1.60	1.30	0.71	0.87	3.50	86401	3039	36	2949	237	0	0	logfile
✔	7ASM	11900	2022-12-16	2020-10-27	2.48	2.98	—	2.8	0.010	0.84	0.0	0.05	14.78	0.01	2.012	5.47	0.65	7.3	92.3	0.4	-3.05	0.89	0.91	4.54	2.8	0.005	0.65	0.0	0.04	15.00	0.01	2.064	5.40	2.29	6.6	93.3	0.1	-0.90	0.30	0.85	0.92	3.87	86149	3036	30	2949	1	0	0	logfile
✔	8AP4	15558	2022-12-16	2022-08-09	3.0	2.99	2.97	3.1	0.007	0.80	0.0	0.05	14.44	0.02	1.999	4.10	1.62	3.6	96.3	0.1	-0.03	0.86	0.88	2.78	3.1	0.006	0.67	0.0	0.04	14.60	0.01	2.039	10.53	3.16	4.1	95.9	0.0	-0.37	0.88	0.86	0.88	2.59	88614	3266	33	2940	0	0	0	logfile
✔	6GBZ	4378	2022-12-16	2018-04-16	3.8	4.02	—	3.9	0.002	0.61	0.0	0.03	13.32	0.00	2.235	2.87	0.08	6.2	93.4	0.3	-4.24	0.72	0.67	1.01	3.9	0.005	0.72	0.0	0.04	15.83	0.01	1.983	19.65	1.04	10.8	89.1	0.1	-2.14	0.88	0.78	0.77	1.03	86401	3074	29	2908	0	0	0	logfile
✔	5T5H	8361	2022-12-19	2016-08-31	2.54	2.84	—	2.9	0.015	1.25	1.0	0.06	16.68	0.04	0.838	36.92	0.69	5.4	93.4	1.2	-2.36	0.64	0.82	3.92	2.9	0.005	0.91	0.0	0.04	17.62	0.01	1.804	15.55	3.14	3.9	96.0	0.1	-0.59	2.19	0.61	0.83	3.15	105112	5369	74	2884	108	83	0	logfile
✔	6WU9	21907	2022-12-15	2020-05-04	2.9	2.24	—	2.7	0.011	1.15	0.0	0.06	16.56	0.01	1.989	5.75	16.81	10.7	88.9	0.3	-3.84	0.70	0.84	3.27	2.7	0.008	0.93	0.0	0.05	16.18	0.01	1.922	5.25	8.00	9.4	90.5	0.1	-1.89	1.59	0.71	0.87	2.99	82295	2697	30	2855	3	0	0	logfile

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