Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6PPK	20441	2023-04-29	2019-07-07	4.4	4.58	—	4.5	0.008	1.08	15.0	0.05	20.24	0.01	1.150	22.61	8.03	11.8	87.5	0.7	-4.28	0.88	0.83	—	4.4	0.005	0.75	0.0	0.04	19.38	0.01	2.041	27.33	0.04	10.8	89.2	0.0	-2.34	1.59	0.88	0.84	—	80451	2684	24	2770	1	0	0	logfile
✔	6YLX	10841	2023-04-23	2020-04-07	3.9	3.78	3.86	3.8	0.019	1.57	1.0	0.08	17.82	0.01	1.989	6.50	0.65	3.4	96.6	0.0	-3.91	0.81	0.81	1.40	3.7	0.003	0.75	0.0	0.04	17.39	0.01	2.080	17.10	0.48	7.7	92.2	0.1	-1.54	0.68	0.81	0.82	1.06	118882	7493	47	2757	0	0	0	logfile
✔	6DDD	7867	2023-04-29	2018-05-10	3.1	3.19	—	3.1	0.008	0.85	0.0	0.05	16.16	0.01	1.998	16.48	0.05	10.6	89.4	0.0	-4.62	0.78	0.84	3.48	3.1	0.006	0.73	0.0	0.04	16.28	0.01	2.049	8.75	0.88	9.6	90.4	0.0	-2.39	1.14	0.81	0.86	2.99	79118	2568	28	2750	1	0	0	logfile
✔	7PWG	13681	2023-04-20	2021-10-06	2.75	2.35	—	2.5	0.010	1.07	0.0	0.06	16.06	0.02	1.376	3.78	6.08	4.4	95.6	0.0	-2.19	0.76	0.88	4.64	2.5	0.007	0.93	0.0	0.05	16.61	0.01	1.664	4.15	3.60	3.8	96.2	0.0	-0.54	0.30	0.77	0.88	4.03	109151	5769	105	2722	294	4397	0	logfile
✔	6GC4	4380	2023-04-29	2018-04-17	4.3	4.54	—	4.3	0.003	0.77	0.0	0.03	13.73	0.01	2.252	4.11	0.39	6.9	92.9	0.2	-3.77	0.70	0.60	—	4.3	0.008	0.89	0.0	0.04	16.38	0.01	1.958	31.29	0.04	13.2	86.6	0.2	-3.03	1.05	0.81	0.80	—	80165	2836	26	2705	0	0	0	logfile
✔	6SJ6	10212	2023-04-28	2019-08-12	3.23	3.28	—	3.2	0.010	1.05	0.0	0.06	17.17	0.01	1.886	4.33	0.14	17.7	82.2	0.2	-6.09	0.78	0.78	3.43	3.2	0.005	0.78	0.0	0.04	17.22	0.01	1.839	8.44	0.51	12.8	87.2	0.0	-3.73	2.00	0.80	0.80	2.36	78296	2611	27	2697	59	0	0	logfile
✔	6PPF	20435	2023-04-26	2019-07-06	3.4	3.48	—	3.4	0.006	0.88	13.0	0.05	19.21	0.00	1.152	14.99	7.36	9.0	90.1	0.9	-4.80	0.73	0.73	1.38	3.4	0.003	0.62	0.0	0.03	18.42	0.00	2.051	10.74	0.52	7.0	92.9	0.1	-2.46	0.66	0.81	0.82	1.58	71835	2101	22	2583	0	13	0	logfile
✔	8ESQ	24411	2023-04-27	2022-10-14	2.8	2.84	—	2.7	0.003	0.56	0.0	0.04	15.88	0.00	2.136	10.87	1.01	3.9	96.0	0.1	0.54	0.73	0.72	2.54	2.7	0.004	0.61	0.0	0.04	16.09	0.00	2.077	11.69	1.82	4.0	95.9	0.1	0.84	1.11	0.74	0.73	2.39	130409	10263	59	2461	1	0	0	logfile
✔	7S9U	24937	2023-04-25	2021-09-21	3.2	3.94	—	3.1	0.011	0.96	0.0	0.06	18.26	0.01	1.016	12.03	1.90	15.2	84.3	0.4	-5.38	0.66	0.63	2.37	3.1	0.007	0.70	0.0	0.04	17.45	0.01	2.035	10.21	0.69	8.8	91.1	0.1	-2.35	0.41	0.89	0.90	2.02	68620	2090	19	2436	0	0	0	logfile
✔	7SAE	24950	2023-04-25	2021-09-22	3.0	3.49	—	3.0	0.008	0.99	0.0	0.05	17.46	0.01	2.251	2.73	0.29	7.8	92.1	0.1	-4.37	0.81	0.78	3.61	3.0	0.004	0.63	0.0	0.04	17.16	0.01	2.073	7.22	2.13	6.6	93.4	0.0	-1.78	0.92	0.87	0.91	2.99	68571	2090	19	2434	0	0	0	logfile
✔	8ESR	24422	2023-04-23	2022-10-14	3.2	3.24	—	3.0	0.002	0.47	0.0	0.03	15.69	0.00	2.118	7.71	0.28	3.0	96.9	0.1	0.71	0.76	0.74	2.20	3.0	0.005	0.57	0.0	0.04	15.74	0.00	2.095	10.25	0.32	4.1	95.9	0.1	1.10	0.34	0.78	0.77	2.07	116762	9286	57	2372	1	0	0	logfile
✔	6PVK	20491	2023-04-21	2019-07-20	3.4	3.47	—	3.4	0.010	1.03	5.0	0.05	19.36	0.01	1.370	14.08	6.50	10.3	88.7	1.0	-4.94	0.69	0.69	1.32	3.4	0.003	0.59	0.0	0.03	18.05	0.00	2.030	10.12	0.87	7.2	92.7	0.1	-2.40	0.69	0.79	0.80	1.43	60554	1791	18	2169	0	2	0	logfile
✔	6GC6	4381	2023-04-21	2018-04-17	4.3	5.02	—	4.5	0.003	0.66	0.0	0.03	12.88	0.00	2.229	5.26	0.00	6.0	93.9	0.1	-3.94	0.74	0.57	—	4.5	0.007	0.69	0.0	0.04	15.42	0.00	1.998	28.16	0.00	8.9	91.0	0.1	-1.90	2.13	0.91	0.85	—	61404	2118	19	2092	0	0	0	logfile
✔	6W2T	21530	2023-04-21	2020-03-08	3.36	3.35	3.39	3.3	0.012	1.53	3.0	0.09	17.41	0.00	1.933	5.07	1.45	11.4	87.1	1.5	-4.58	0.68	0.73	1.93	3.3	0.005	0.75	0.0	0.04	17.85	0.01	2.062	12.99	0.61	9.8	90.1	0.1	-1.84	1.22	0.77	0.79	1.58	109778	8254	46	2036	2	0	0	logfile
✔	5iT9	8124	2023-04-29	2016-03-16	3.8	3.86	3.80	3.9	0.007	1.31	42.0	0.10	21.51	0.01	0.713	10.39	9.44	11.2	84.3	4.6	-3.05	0.60	0.76	0.99	3.8	0.005	0.84	0.0	0.04	19.92	0.01	1.810	19.12	1.00	11.9	86.6	1.5	-2.03	1.72	0.62	0.79	1.00	80144	4848	43	1972	83	0	0	logfile
✔	8ETJ	24396	2023-04-29	2022-10-17	3.2	3.29	—	3.1	0.004	0.61	0.0	0.04	17.20	0.00	2.061	12.38	0.81	4.9	94.9	0.2	-0.83	0.80	0.81	2.29	3.1	0.005	0.66	0.0	0.04	17.26	0.00	2.074	14.51	0.62	5.7	94.2	0.1	-0.18	1.17	0.82	0.84	2.15	79857	4979	36	1961	1	0	0	logfile
✔	6ZVi	11457	2023-04-29	2020-07-24	3.0	3.20	3.13	3.0	0.007	0.97	0.0	0.05	17.67	0.01	1.914	5.92	0.02	5.2	94.6	0.2	-2.84	0.55	0.84	2.91	3.0	0.006	0.75	0.0	0.04	17.95	0.01	2.005	12.02	2.47	9.6	90.2	0.1	-1.31	1.87	0.56	0.87	2.33	80088	4918	40	1946	2	0	0	logfile
✔	7SYP	25536	2023-04-29	2021-11-25	4.0	3.37	3.92	3.3	0.003	0.83	4.0	0.04	15.65	0.01	2.250	5.48	0.05	4.7	95.3	0.0	-2.44	0.65	0.62	—	3.2	0.003	0.62	0.0	0.04	16.73	0.00	2.061	13.49	0.57	6.0	93.9	0.0	-1.02	1.17	0.70	0.75	—	80436	4896	39	1941	2	0	0	logfile
✔	6GC7	4382	2023-04-20	2018-04-17	4.3	4.85	—	4.4	0.003	0.67	0.0	0.03	13.13	0.00	2.251	5.08	0.28	5.9	93.9	0.1	-4.27	0.76	0.61	—	4.4	0.007	0.65	0.0	0.03	15.19	0.00	1.974	24.68	0.00	9.8	90.1	0.1	-2.10	1.65	0.91	0.86	—	54410	1738	17	1901	0	0	0	logfile
✔	6P4H	20249	2023-04-29	2019-05-27	3.2	3.13	3.20	3.1	0.010	1.43	0.0	0.10	16.95	0.00	2.179	2.56	2.17	6.6	92.8	0.7	-3.62	0.67	0.75	2.61	3.1	0.005	0.69	0.0	0.04	17.59	0.00	2.043	12.17	0.57	5.3	94.6	0.0	-0.75	0.66	0.78	0.82	2.06	79374	4862	36	1900	0	0	0	logfile

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