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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6PPK | 20441 | 2023-04-29 | 2019-07-07 | 4.4 | 4.58 | — | 4.5 | 0.008 | 1.08 | 15.0 | 0.05 | 20.24 | 0.01 | 1.150 | 22.61 | 8.03 | 11.8 | 87.5 | 0.7 | -4.28 | 0.88 | 0.83 | — | 4.4 | 0.005 | 0.75 | 0.0 | 0.04 | 19.38 | 0.01 | 2.041 | 27.33 | 0.04 | 10.8 | 89.2 | 0.0 | -2.34 | 1.59 | 0.88 | 0.84 | — | 80451 | 2684 | 24 | 2770 | 1 | 0 | 0 | logfile |
✔ | 6YLX | 10841 | 2023-04-23 | 2020-04-07 | 3.9 | 3.78 | 3.86 | 3.8 | 0.019 | 1.57 | 1.0 | 0.08 | 17.82 | 0.01 | 1.989 | 6.50 | 0.65 | 3.4 | 96.6 | 0.0 | -3.91 | 0.81 | 0.81 | 1.40 | 3.7 | 0.003 | 0.75 | 0.0 | 0.04 | 17.39 | 0.01 | 2.080 | 17.10 | 0.48 | 7.7 | 92.2 | 0.1 | -1.54 | 0.68 | 0.81 | 0.82 | 1.06 | 118882 | 7493 | 47 | 2757 | 0 | 0 | 0 | logfile |
✔ | 6DDD | 7867 | 2023-04-29 | 2018-05-10 | 3.1 | 3.19 | — | 3.1 | 0.008 | 0.85 | 0.0 | 0.05 | 16.16 | 0.01 | 1.998 | 16.48 | 0.05 | 10.6 | 89.4 | 0.0 | -4.62 | 0.78 | 0.84 | 3.48 | 3.1 | 0.006 | 0.73 | 0.0 | 0.04 | 16.28 | 0.01 | 2.049 | 8.75 | 0.88 | 9.6 | 90.4 | 0.0 | -2.39 | 1.14 | 0.81 | 0.86 | 2.99 | 79118 | 2568 | 28 | 2750 | 1 | 0 | 0 | logfile |
✔ | 7PWG | 13681 | 2023-04-20 | 2021-10-06 | 2.75 | 2.35 | — | 2.5 | 0.010 | 1.07 | 0.0 | 0.06 | 16.06 | 0.02 | 1.376 | 3.78 | 6.08 | 4.4 | 95.6 | 0.0 | -2.19 | 0.76 | 0.88 | 4.64 | 2.5 | 0.007 | 0.93 | 0.0 | 0.05 | 16.61 | 0.01 | 1.664 | 4.15 | 3.60 | 3.8 | 96.2 | 0.0 | -0.54 | 0.30 | 0.77 | 0.88 | 4.03 | 109151 | 5769 | 105 | 2722 | 294 | 4397 | 0 | logfile |
✔ | 6GC4 | 4380 | 2023-04-29 | 2018-04-17 | 4.3 | 4.54 | — | 4.3 | 0.003 | 0.77 | 0.0 | 0.03 | 13.73 | 0.01 | 2.252 | 4.11 | 0.39 | 6.9 | 92.9 | 0.2 | -3.77 | 0.70 | 0.60 | — | 4.3 | 0.008 | 0.89 | 0.0 | 0.04 | 16.38 | 0.01 | 1.958 | 31.29 | 0.04 | 13.2 | 86.6 | 0.2 | -3.03 | 1.05 | 0.81 | 0.80 | — | 80165 | 2836 | 26 | 2705 | 0 | 0 | 0 | logfile |
✔ | 6SJ6 | 10212 | 2023-04-28 | 2019-08-12 | 3.23 | 3.28 | — | 3.2 | 0.010 | 1.05 | 0.0 | 0.06 | 17.17 | 0.01 | 1.886 | 4.33 | 0.14 | 17.7 | 82.2 | 0.2 | -6.09 | 0.78 | 0.78 | 3.43 | 3.2 | 0.005 | 0.78 | 0.0 | 0.04 | 17.22 | 0.01 | 1.839 | 8.44 | 0.51 | 12.8 | 87.2 | 0.0 | -3.73 | 2.00 | 0.80 | 0.80 | 2.36 | 78296 | 2611 | 27 | 2697 | 59 | 0 | 0 | logfile |
✔ | 6PPF | 20435 | 2023-04-26 | 2019-07-06 | 3.4 | 3.48 | — | 3.4 | 0.006 | 0.88 | 13.0 | 0.05 | 19.21 | 0.00 | 1.152 | 14.99 | 7.36 | 9.0 | 90.1 | 0.9 | -4.80 | 0.73 | 0.73 | 1.38 | 3.4 | 0.003 | 0.62 | 0.0 | 0.03 | 18.42 | 0.00 | 2.051 | 10.74 | 0.52 | 7.0 | 92.9 | 0.1 | -2.46 | 0.66 | 0.81 | 0.82 | 1.58 | 71835 | 2101 | 22 | 2583 | 0 | 13 | 0 | logfile |
✔ | 8ESQ | 24411 | 2023-04-27 | 2022-10-14 | 2.8 | 2.84 | — | 2.7 | 0.003 | 0.56 | 0.0 | 0.04 | 15.88 | 0.00 | 2.136 | 10.87 | 1.01 | 3.9 | 96.0 | 0.1 | 0.54 | 0.73 | 0.72 | 2.54 | 2.7 | 0.004 | 0.61 | 0.0 | 0.04 | 16.09 | 0.00 | 2.077 | 11.69 | 1.82 | 4.0 | 95.9 | 0.1 | 0.84 | 1.11 | 0.74 | 0.73 | 2.39 | 130409 | 10263 | 59 | 2461 | 1 | 0 | 0 | logfile |
✔ | 7S9U | 24937 | 2023-04-25 | 2021-09-21 | 3.2 | 3.94 | — | 3.1 | 0.011 | 0.96 | 0.0 | 0.06 | 18.26 | 0.01 | 1.016 | 12.03 | 1.90 | 15.2 | 84.3 | 0.4 | -5.38 | 0.66 | 0.63 | 2.37 | 3.1 | 0.007 | 0.70 | 0.0 | 0.04 | 17.45 | 0.01 | 2.035 | 10.21 | 0.69 | 8.8 | 91.1 | 0.1 | -2.35 | 0.41 | 0.89 | 0.90 | 2.02 | 68620 | 2090 | 19 | 2436 | 0 | 0 | 0 | logfile |
✔ | 7SAE | 24950 | 2023-04-25 | 2021-09-22 | 3.0 | 3.49 | — | 3.0 | 0.008 | 0.99 | 0.0 | 0.05 | 17.46 | 0.01 | 2.251 | 2.73 | 0.29 | 7.8 | 92.1 | 0.1 | -4.37 | 0.81 | 0.78 | 3.61 | 3.0 | 0.004 | 0.63 | 0.0 | 0.04 | 17.16 | 0.01 | 2.073 | 7.22 | 2.13 | 6.6 | 93.4 | 0.0 | -1.78 | 0.92 | 0.87 | 0.91 | 2.99 | 68571 | 2090 | 19 | 2434 | 0 | 0 | 0 | logfile |
✔ | 8ESR | 24422 | 2023-04-23 | 2022-10-14 | 3.2 | 3.24 | — | 3.0 | 0.002 | 0.47 | 0.0 | 0.03 | 15.69 | 0.00 | 2.118 | 7.71 | 0.28 | 3.0 | 96.9 | 0.1 | 0.71 | 0.76 | 0.74 | 2.20 | 3.0 | 0.005 | 0.57 | 0.0 | 0.04 | 15.74 | 0.00 | 2.095 | 10.25 | 0.32 | 4.1 | 95.9 | 0.1 | 1.10 | 0.34 | 0.78 | 0.77 | 2.07 | 116762 | 9286 | 57 | 2372 | 1 | 0 | 0 | logfile |
✔ | 6PVK | 20491 | 2023-04-21 | 2019-07-20 | 3.4 | 3.47 | — | 3.4 | 0.010 | 1.03 | 5.0 | 0.05 | 19.36 | 0.01 | 1.370 | 14.08 | 6.50 | 10.3 | 88.7 | 1.0 | -4.94 | 0.69 | 0.69 | 1.32 | 3.4 | 0.003 | 0.59 | 0.0 | 0.03 | 18.05 | 0.00 | 2.030 | 10.12 | 0.87 | 7.2 | 92.7 | 0.1 | -2.40 | 0.69 | 0.79 | 0.80 | 1.43 | 60554 | 1791 | 18 | 2169 | 0 | 2 | 0 | logfile |
✔ | 6GC6 | 4381 | 2023-04-21 | 2018-04-17 | 4.3 | 5.02 | — | 4.5 | 0.003 | 0.66 | 0.0 | 0.03 | 12.88 | 0.00 | 2.229 | 5.26 | 0.00 | 6.0 | 93.9 | 0.1 | -3.94 | 0.74 | 0.57 | — | 4.5 | 0.007 | 0.69 | 0.0 | 0.04 | 15.42 | 0.00 | 1.998 | 28.16 | 0.00 | 8.9 | 91.0 | 0.1 | -1.90 | 2.13 | 0.91 | 0.85 | — | 61404 | 2118 | 19 | 2092 | 0 | 0 | 0 | logfile |
✔ | 6W2T | 21530 | 2023-04-21 | 2020-03-08 | 3.36 | 3.35 | 3.39 | 3.3 | 0.012 | 1.53 | 3.0 | 0.09 | 17.41 | 0.00 | 1.933 | 5.07 | 1.45 | 11.4 | 87.1 | 1.5 | -4.58 | 0.68 | 0.73 | 1.93 | 3.3 | 0.005 | 0.75 | 0.0 | 0.04 | 17.85 | 0.01 | 2.062 | 12.99 | 0.61 | 9.8 | 90.1 | 0.1 | -1.84 | 1.22 | 0.77 | 0.79 | 1.58 | 109778 | 8254 | 46 | 2036 | 2 | 0 | 0 | logfile |
✔ | 5iT9 | 8124 | 2023-04-29 | 2016-03-16 | 3.8 | 3.86 | 3.80 | 3.9 | 0.007 | 1.31 | 42.0 | 0.10 | 21.51 | 0.01 | 0.713 | 10.39 | 9.44 | 11.2 | 84.3 | 4.6 | -3.05 | 0.60 | 0.76 | 0.99 | 3.8 | 0.005 | 0.84 | 0.0 | 0.04 | 19.92 | 0.01 | 1.810 | 19.12 | 1.00 | 11.9 | 86.6 | 1.5 | -2.03 | 1.72 | 0.62 | 0.79 | 1.00 | 80144 | 4848 | 43 | 1972 | 83 | 0 | 0 | logfile |
✔ | 8ETJ | 24396 | 2023-04-29 | 2022-10-17 | 3.2 | 3.29 | — | 3.1 | 0.004 | 0.61 | 0.0 | 0.04 | 17.20 | 0.00 | 2.061 | 12.38 | 0.81 | 4.9 | 94.9 | 0.2 | -0.83 | 0.80 | 0.81 | 2.29 | 3.1 | 0.005 | 0.66 | 0.0 | 0.04 | 17.26 | 0.00 | 2.074 | 14.51 | 0.62 | 5.7 | 94.2 | 0.1 | -0.18 | 1.17 | 0.82 | 0.84 | 2.15 | 79857 | 4979 | 36 | 1961 | 1 | 0 | 0 | logfile |
✔ | 6ZVi | 11457 | 2023-04-29 | 2020-07-24 | 3.0 | 3.20 | 3.13 | 3.0 | 0.007 | 0.97 | 0.0 | 0.05 | 17.67 | 0.01 | 1.914 | 5.92 | 0.02 | 5.2 | 94.6 | 0.2 | -2.84 | 0.55 | 0.84 | 2.91 | 3.0 | 0.006 | 0.75 | 0.0 | 0.04 | 17.95 | 0.01 | 2.005 | 12.02 | 2.47 | 9.6 | 90.2 | 0.1 | -1.31 | 1.87 | 0.56 | 0.87 | 2.33 | 80088 | 4918 | 40 | 1946 | 2 | 0 | 0 | logfile |
✔ | 7SYP | 25536 | 2023-04-29 | 2021-11-25 | 4.0 | 3.37 | 3.92 | 3.3 | 0.003 | 0.83 | 4.0 | 0.04 | 15.65 | 0.01 | 2.250 | 5.48 | 0.05 | 4.7 | 95.3 | 0.0 | -2.44 | 0.65 | 0.62 | — | 3.2 | 0.003 | 0.62 | 0.0 | 0.04 | 16.73 | 0.00 | 2.061 | 13.49 | 0.57 | 6.0 | 93.9 | 0.0 | -1.02 | 1.17 | 0.70 | 0.75 | — | 80436 | 4896 | 39 | 1941 | 2 | 0 | 0 | logfile |
✔ | 6GC7 | 4382 | 2023-04-20 | 2018-04-17 | 4.3 | 4.85 | — | 4.4 | 0.003 | 0.67 | 0.0 | 0.03 | 13.13 | 0.00 | 2.251 | 5.08 | 0.28 | 5.9 | 93.9 | 0.1 | -4.27 | 0.76 | 0.61 | — | 4.4 | 0.007 | 0.65 | 0.0 | 0.03 | 15.19 | 0.00 | 1.974 | 24.68 | 0.00 | 9.8 | 90.1 | 0.1 | -2.10 | 1.65 | 0.91 | 0.86 | — | 54410 | 1738 | 17 | 1901 | 0 | 0 | 0 | logfile |
✔ | 6P4H | 20249 | 2023-04-29 | 2019-05-27 | 3.2 | 3.13 | 3.20 | 3.1 | 0.010 | 1.43 | 0.0 | 0.10 | 16.95 | 0.00 | 2.179 | 2.56 | 2.17 | 6.6 | 92.8 | 0.7 | -3.62 | 0.67 | 0.75 | 2.61 | 3.1 | 0.005 | 0.69 | 0.0 | 0.04 | 17.59 | 0.00 | 2.043 | 12.17 | 0.57 | 5.3 | 94.6 | 0.0 | -0.75 | 0.66 | 0.78 | 0.82 | 2.06 | 79374 | 4862 | 36 | 1900 | 0 | 0 | 0 | logfile |