Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	3J8H	2807	2023-11-14	2014-10-26	3.8	3.95	—	3.8	0.006	1.31	4.0	0.05	10.89	0.01	1.488	33.49	2.47	5.3	92.8	1.9	-2.06	0.65	0.64	1.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	111160	12796	12	0	2276	0	0	logfile
✔	6F1T	4168	2023-11-21	2017-11-23	3.5	3.80	—	3.5	0.011	1.43	0.0	0.07	9.94	0.01	1.456	9.09	0.44	10.8	89.1	0.2	-4.05	0.76	0.63	1.82	3.5	0.003	0.70	0.0	0.04	13.96	0.00	1.919	12.97	0.24	7.5	92.5	0.0	-1.14	0.96	0.79	0.74	1.50	92795	11785	55	0	2212	0	0	logfile
✔	6M2W	30067	2023-11-16	2020-03-01	3.8	2.59	3.89	2.6	0.006	1.08	0.0	0.05	15.58	0.01	2.276	3.96	3.59	3.1	96.9	0.0	-5.38	0.77	0.64	0.21	2.1	0.003	0.63	0.0	0.04	15.54	0.00	2.105	8.78	0.22	2.8	97.2	0.0	0.30	1.82	0.83	0.79	1.96	120452	14972	16	0	1828	0	0	logfile
✔	7CF9	30343	2023-11-15	2020-06-24	4.7	4.24	5.21	4.0	0.006	1.24	0.0	0.06	16.01	0.01	1.538	5.47	1.67	6.2	93.7	0.1	-4.86	0.79	0.68	—	4.0	0.003	0.76	0.0	0.04	13.67	0.00	2.032	14.49	0.00	5.5	94.5	0.0	-2.02	1.79	0.81	0.74	—	116104	14416	12	0	1820	0	0	logfile
✔	7PKQ	13477	2023-11-17	2021-08-26	4.2	4.26	4.62	4.1	0.009	1.42	20.0	0.08	17.46	0.01	2.123	9.00	0.89	6.0	93.8	0.3	-2.71	0.63	0.61	—	4.1	0.004	0.74	0.0	0.04	16.94	0.01	1.966	19.69	0.00	7.4	92.5	0.1	-1.27	0.93	0.65	0.66	—	70313	4968	44	1114	1722	0	0	logfile
✔	6LHV	0900	2023-11-16	2019-12-10	4.59	4.86	—	4.4	0.010	1.38	0.0	0.05	5.37	0.00	1.654	9.63	0.00	0.0	0.0	0.0	—	0.70	0.59	—	4.4	0.010	1.38	0.0	0.05	6.64	0.00	2.051	53.25	0.00	0.0	0.0	0.0	—	3.58	0.84	0.81	—	8456	0	3	0	1707	0	0	logfile
✔	6J40	9777	2023-11-21	2019-01-07	3.8	4.30	—	3.8	0.022	1.99	4.0	0.18	19.03	0.01	1.376	17.72	0.33	4.5	95.5	0.0	-5.08	0.80	0.72	1.93	3.8	0.003	0.74	0.0	0.04	16.50	0.00	1.533	17.03	0.24	4.1	95.9	0.0	-0.09	0.70	0.84	0.77	1.57	96390	8392	120	0	1656	0	0	logfile
✔	6S8F	10120	2023-11-21	2019-07-09	4.0	4.88	—	3.9	0.007	1.26	0.0	0.06	11.68	0.01	1.859	6.71	0.80	9.6	90.3	0.1	-4.38	0.88	0.77	—	3.9	0.042	2.95	51.0	0.11	17.89	0.02	1.488	187.53	3.85	53.1	44.5	2.4	-7.96	2.39	0.90	0.88	—	33664	3530	4	0	1616	0	0	logfile
✔	7Q5A	13830	2023-11-15	2021-11-03	2.46	2.69	—	2.6	0.112	1.10	0.0	0.06	9.54	0.00	2.247	3.06	0.00	0.0	100.0	0.0	0.99	0.66	0.84	6.72	2.6	0.055	4.01	258.0	0.21	16.76	0.02	1.950	33.36	2.52	0.0	100.0	0.0	0.88	1.64	0.67	0.85	6.22	61600	5600	800	0	1600	0	0	logfile
✔	6LHW	0901	2023-11-15	2019-12-10	4.84	5.29	—	4.6	0.008	1.37	1.0	0.05	5.28	0.00	1.530	14.43	0.00	0.0	0.0	0.0	—	0.64	0.56	—	4.6	0.008	1.29	0.0	0.04	6.56	0.00	2.027	44.00	0.00	0.0	0.0	0.0	—	3.20	0.83	0.64	—	7644	0	3	0	1541	0	0	logfile
✔	6X33	22016	2023-11-15	2020-05-21	4.2	4.35	—	4.3	0.001	0.37	0.0	0.03	9.39	0.00	2.304	3.24	0.00	1.9	98.1	0.0	-4.22	0.55	0.69	—	4.3	0.003	0.64	0.0	0.04	11.75	0.00	2.056	8.49	0.06	3.0	97.0	0.0	0.21	0.65	0.57	0.72	—	112372	14796	16	0	1436	0	0	logfile
✔	6X35	22018	2023-11-14	2020-05-21	4.2	4.14	—	4.2	0.001	0.37	0.0	0.03	8.42	0.00	2.202	3.37	0.05	1.8	98.1	0.0	-1.11	0.52	0.67	—	4.1	0.003	0.64	0.0	0.04	11.49	0.00	2.229	8.53	0.02	3.2	96.8	0.0	1.06	1.69	0.57	0.72	—	111888	14740	16	0	1432	0	0	logfile
✔	6X32	22015	2023-11-15	2020-05-21	3.8	3.75	—	3.9	0.001	0.36	0.0	0.03	7.99	0.00	2.266	3.27	0.00	1.4	98.6	0.0	-3.72	0.56	0.69	2.26	3.9	0.004	0.67	0.0	0.04	13.24	0.00	2.114	9.22	0.43	3.1	96.9	0.0	0.55	1.68	0.60	0.74	1.86	114280	14744	16	0	1416	0	0	logfile
✘	3JB9	6413	2023-11-20	2015-08-09	3.6	3.70	—	3.6	0.010	1.29	13.0	0.07	16.84	0.01	1.253	18.05	8.06	9.1	87.9	3.0	-3.97	0.52	0.51	1.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	86551	9194	50	328	1328	0	0	logfile
✔	6oDY	20024	2023-11-19	2019-03-27	3.8	3.40	—	3.2	0.010	1.59	18.0	0.11	15.38	0.01	1.264	18.28	3.15	16.6	83.3	0.0	-5.02	0.66	0.62	1.16	3.2	0.030	3.05	5.0	0.14	20.12	0.02	1.721	102.91	3.91	37.7	61.0	1.3	-7.26	1.53	0.69	0.69	1.79	28116	2832	6	0	1326	0	0	logfile
✔	6W1N	21513	2023-11-13	2020-03-04	4.0	4.43	4.16	4.1	0.002	0.55	0.0	0.04	12.17	0.00	2.226	6.50	0.41	1.4	98.6	0.0	-0.42	0.72	0.75	—	4.1	0.003	0.76	0.0	0.04	14.15	0.00	2.112	11.82	0.29	2.8	97.2	0.0	0.86	0.75	0.74	0.80	—	105232	13984	12	0	1320	0	0	logfile
✔	6ND4	0441	2023-11-15	2018-12-13	4.3	4.41	—	4.2	0.010	1.03	0.0	0.06	14.55	0.02	2.230	5.19	0.00	6.4	93.6	0.1	-3.63	0.80	0.66	—	4.2	0.003	0.86	0.0	0.05	13.81	0.00	2.028	11.25	0.00	10.2	89.8	0.0	-2.44	1.06	0.84	0.77	—	63993	9225	30	551	1306	0	0	logfile
✔	7oLE	12979	2023-11-19	2021-05-19	3.41	4.34	3.59	3.9	0.013	1.74	25.0	0.10	15.12	0.01	1.371	42.05	0.38	17.2	81.9	0.8	-5.68	0.55	0.26	-0.19	3.6	0.005	0.85	0.0	0.04	15.96	0.00	2.067	24.45	0.57	11.8	88.0	0.2	-2.00	1.97	0.76	0.74	0.66	26995	2899	14	0	1129	0	0	logfile
✔	3JAC	6343	2023-11-16	2015-06-05	4.8	6.42	—	9.4	0.007	1.81	3.0	0.07	10.64	0.03	1.020	57.64	4.17	5.0	90.3	4.8	1.36	0.42	0.40	—	9.1	0.012	1.69	0.0	0.06	13.69	0.01	1.923	77.11	0.00	27.1	71.7	1.2	-5.31	3.69	0.54	0.61	—	15741	1716	3	0	1038	0	0	logfile
✔	5AJ3	2913	2023-11-16	2015-02-20	3.6	3.73	—	3.7	0.018	1.28	0.0	0.05	18.85	0.07	1.844	24.00	10.71	3.9	96.0	0.1	-3.65	0.86	0.86	2.03	3.6	0.008	1.48	0.0	0.05	19.33	0.02	1.708	19.00	0.81	5.3	94.6	0.1	-0.10	1.63	0.84	0.82	1.62	66363	4665	44	1102	1006	118	0	logfile

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