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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6L4U | 0835 | 2022-12-19 | 2019-10-21 | 2.4 | 2.57 | — | 2.4 | 0.030 | 2.86 | 13.0 | 0.18 | 22.45 | 0.02 | 1.211 | 7.56 | 1.65 | 6.1 | 93.6 | 0.2 | -4.47 | 0.79 | 0.85 | 4.06 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62199 | 5075 | 72 | 0 | 557 | 156 | 0 | logfile |
✘ | 6KAF | 9957 | 2022-12-19 | 2019-06-22 | 3.73 | 3.95 | — | 3.7 | 0.014 | 1.69 | 0.0 | 0.10 | 16.92 | 0.01 | 1.212 | 7.91 | 0.62 | 10.0 | 90.0 | 0.1 | -3.68 | 0.78 | 0.73 | 2.47 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 104363 | 9607 | 104 | 0 | 552 | 0 | 0 | logfile |
✔ | 6GMH | 0031 | 2022-12-22 | 2018-05-26 | 3.1 | 3.78 | 3.06 | 3.2 | 0.006 | 0.97 | 0.0 | 0.06 | 12.73 | 0.01 | 1.921 | 5.61 | 0.53 | 4.8 | 95.1 | 0.1 | -2.86 | 0.83 | 0.81 | 2.87 | 3.3 | 0.005 | 0.68 | 0.0 | 0.04 | 14.74 | 0.00 | 1.965 | 11.33 | 0.33 | 5.1 | 94.8 | 0.0 | 0.04 | 0.71 | 0.84 | 0.84 | 2.43 | 50239 | 6397 | 30 | 106 | 525 | 0 | 0 | logfile |
✔ | 6BWD | 7297 | 2022-12-14 | 2017-12-14 | 3.7 | 3.83 | — | 3.8 | 0.011 | 1.65 | 8.0 | 0.09 | 13.73 | 0.01 | 1.254 | 13.17 | 0.57 | 12.5 | 86.3 | 1.2 | -5.69 | 0.64 | 0.76 | 1.55 | 3.8 | 0.003 | 1.06 | 0.0 | 0.04 | 16.32 | 0.00 | 1.980 | 15.83 | 0.47 | 10.0 | 89.2 | 0.7 | -1.33 | 2.50 | 0.64 | 0.77 | 1.05 | 23187 | 2600 | 12 | 0 | 509 | 30 | 0 | logfile |
✔ | 5GAD | 8000 | 2022-12-17 | 2015-11-24 | 3.7 | 4.17 | — | 3.9 | 0.009 | 1.11 | 1.0 | 0.05 | 15.93 | 0.01 | 1.737 | 9.28 | 10.34 | 3.5 | 96.5 | 0.1 | -3.19 | 0.77 | 0.79 | 1.52 | 3.9 | 0.007 | 0.71 | 0.0 | 0.04 | 15.35 | 0.01 | 1.012 | 21.05 | 0.58 | 4.3 | 95.6 | 0.1 | -0.41 | 2.14 | 0.81 | 0.88 | 1.48 | 98006 | 4087 | 49 | 3049 | 507 | 0 | 0 | logfile |
✘ | 6JEo | 9807 | 2022-12-19 | 2019-02-06 | 3.3 | 3.44 | — | 3.4 | 0.009 | 1.14 | 0.0 | 0.06 | 18.11 | 0.02 | 1.212 | 7.53 | 0.24 | 4.8 | 95.2 | 0.0 | -5.26 | 0.73 | 0.81 | 4.38 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 94576 | 8774 | 88 | 0 | 504 | 0 | 0 | logfile |
✔ | 5MMi | 3531 | 2022-12-17 | 2016-12-10 | 3.2 | 3.30 | — | 3.2 | 0.008 | 1.15 | 0.0 | 0.05 | 16.64 | 0.01 | 1.753 | 7.97 | 9.25 | 5.3 | 94.4 | 0.3 | -3.29 | 0.89 | 0.88 | 1.90 | 3.2 | 0.005 | 0.65 | 0.0 | 0.04 | 16.35 | 0.01 | 1.833 | 11.63 | 0.66 | 4.6 | 95.4 | 0.0 | -1.08 | 2.06 | 0.88 | 0.86 | 1.61 | 95397 | 3769 | 56 | 3027 | 503 | 0 | 0 | logfile |
✘ | 5XNL | 6741 | 2022-12-19 | 2017-05-23 | 2.7 | 2.75 | — | 2.8 | 0.013 | 1.60 | 0.0 | 0.09 | 15.86 | 0.02 | 1.207 | 10.25 | 0.08 | 2.1 | 97.9 | 0.0 | -3.12 | 0.55 | 0.78 | 3.96 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 98986 | 9364 | 136 | 0 | 490 | 1076 | 0 | logfile |
✘ | 5XNM | 6742 | 2022-12-19 | 2017-05-23 | 3.2 | 3.28 | — | 3.3 | 0.011 | 1.67 | 0.0 | 0.08 | 16.06 | 0.02 | 1.205 | 9.94 | 0.03 | 2.3 | 97.7 | 0.0 | -2.60 | 0.71 | 0.82 | 3.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 92842 | 8712 | 90 | 0 | 486 | 0 | 0 | logfile |
✘ | 6C0F | 7324 | 2022-12-19 | 2017-12-29 | 3.7 | 4.02 | — | 3.7 | 0.007 | 1.03 | 0.0 | 0.05 | 14.97 | 0.01 | 1.985 | 10.78 | 0.28 | 5.2 | 94.8 | 0.1 | -2.72 | 0.82 | 0.82 | 1.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 91742 | 6845 | 46 | 1602 | 481 | 0 | 0 | logfile |
✘ | 6BWF | 7298 | 2022-12-18 | 2017-12-14 | 4.1 | 4.19 | — | 4.2 | 0.008 | 1.49 | 2.0 | 0.07 | 12.82 | 0.01 | 2.204 | 12.32 | 0.59 | 12.1 | 86.6 | 1.3 | -5.34 | 0.62 | 0.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22174 | 2584 | 4 | 0 | 480 | 0 | 0 | logfile |
✔ | 6ZYD | 11557 | 2022-12-18 | 2020-07-31 | 3.0 | 3.62 | 2.76 | 3.4 | 0.017 | 1.20 | 0.0 | 0.12 | 17.41 | 0.01 | 2.269 | 4.88 | 0.00 | 5.1 | 94.9 | 0.0 | -3.12 | 0.75 | 0.77 | 4.36 | 3.4 | 0.059 | 2.56 | 0.0 | 0.17 | 18.86 | 0.02 | 1.730 | 57.41 | 12.94 | 21.7 | 78.3 | 0.0 | -6.10 | 1.47 | 0.79 | 0.86 | 3.23 | 31423 | 1792 | 14 | 0 | 476 | 0 | 14490 | logfile |
✔ | 5GAH | 8004 | 2022-12-17 | 2015-11-26 | 3.8 | 3.97 | — | 3.9 | 0.008 | 1.10 | 0.0 | 0.05 | 15.97 | 0.01 | 1.737 | 8.39 | 11.31 | 3.3 | 96.7 | 0.1 | -3.33 | 0.73 | 0.85 | 1.12 | 3.9 | 0.004 | 0.61 | 0.0 | 0.03 | 15.18 | 0.00 | 1.128 | 13.43 | 0.65 | 3.7 | 96.2 | 0.1 | -0.58 | 1.17 | 0.73 | 0.87 | 1.36 | 94027 | 3595 | 46 | 3049 | 473 | 0 | 0 | logfile |
✔ | 5GAG | 8003 | 2022-12-17 | 2015-11-26 | 3.8 | 3.95 | — | 3.8 | 0.007 | 1.04 | 1.0 | 0.05 | 15.71 | 0.00 | 1.789 | 8.25 | 9.03 | 3.0 | 96.9 | 0.1 | -3.35 | 0.79 | 0.90 | 1.98 | 3.8 | 0.004 | 0.61 | 0.0 | 0.03 | 15.10 | 0.00 | 1.013 | 14.50 | 0.79 | 3.5 | 96.4 | 0.1 | -0.35 | 0.69 | 0.78 | 0.87 | 1.98 | 94030 | 3598 | 46 | 3049 | 473 | 0 | 0 | logfile |
✘ | 7DZ7 | 30925 | 2022-12-19 | 2021-01-23 | 2.84 | 2.53 | — | 2.8 | 0.009 | 1.59 | 0.0 | 0.07 | 20.30 | 0.02 | 1.210 | 6.41 | 0.47 | 4.7 | 95.2 | 0.1 | -2.58 | 0.67 | 0.77 | 3.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 69647 | 5998 | 55 | 0 | 471 | 0 | 0 | logfile |
✘ | 7DZ8 | 30926 | 2022-12-19 | 2021-01-23 | 3.16 | 3.25 | — | 3.2 | 0.011 | 1.68 | 1.0 | 0.07 | 20.65 | 0.02 | 1.209 | 8.52 | 0.19 | 5.7 | 94.3 | 0.0 | -3.15 | 0.82 | 0.83 | 3.41 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 69460 | 5986 | 55 | 0 | 471 | 0 | 0 | logfile |
✔ | 7QCo | 13898 | 2022-12-16 | 2021-11-24 | 3.7 | 3.89 | 3.86 | 3.7 | 0.006 | 0.93 | 0.0 | 0.05 | 21.59 | 0.02 | 1.932 | 24.35 | 9.61 | 13.9 | 86.0 | 0.2 | -4.15 | 0.72 | 0.69 | 0.82 | 3.7 | 0.003 | 0.79 | 0.0 | 0.05 | 19.14 | 0.01 | 1.454 | 19.09 | 0.59 | 10.0 | 90.0 | 0.0 | -1.49 | 0.80 | 0.73 | 0.72 | 0.62 | 90396 | 8812 | 78 | 0 | 462 | 0 | 0 | logfile |
✔ | 4UiS | 2974 | 2022-12-12 | 2015-04-03 | 4.4 | 4.48 | — | 4.4 | 0.009 | 1.29 | 0.0 | 0.06 | 9.92 | 0.01 | 1.546 | 24.94 | 1.19 | 7.7 | 87.4 | 5.0 | -2.00 | 0.50 | 0.56 | — | 4.4 | 0.003 | 0.80 | 0.0 | 0.04 | 12.02 | 0.00 | 2.089 | 16.52 | 0.00 | 10.1 | 88.5 | 1.5 | -1.41 | 1.66 | 0.55 | 0.73 | — | 8518 | 791 | 5 | 0 | 458 | 0 | 0 | logfile |
✘ | 7F4V | 31455 | 2022-12-19 | 2021-06-21 | 2.04 | 1.80 | — | 2.0 | 0.025 | 2.42 | 0.0 | 0.08 | 19.55 | 0.03 | 1.203 | 4.76 | 2.78 | 3.0 | 96.9 | 0.1 | -2.15 | 0.70 | 0.83 | 6.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 67641 | 6336 | 78 | 0 | 453 | 402 | 0 | logfile |
✘ | 7D0J | 30536 | 2022-12-19 | 2020-09-10 | 3.42 | 3.77 | — | 3.7 | 0.011 | 1.27 | 0.0 | 0.09 | 18.65 | 0.01 | 1.058 | 17.22 | 0.04 | 9.4 | 90.3 | 0.3 | -2.31 | 0.77 | 0.79 | 2.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 68860 | 5923 | 56 | 0 | 453 | 0 | 0 | logfile |