Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6L4U	0835	2022-12-19	2019-10-21	2.4	2.57	—	2.4	0.030	2.86	13.0	0.18	22.45	0.02	1.211	7.56	1.65	6.1	93.6	0.2	-4.47	0.79	0.85	4.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	62199	5075	72	0	557	156	0	logfile
✘	6KAF	9957	2022-12-19	2019-06-22	3.73	3.95	—	3.7	0.014	1.69	0.0	0.10	16.92	0.01	1.212	7.91	0.62	10.0	90.0	0.1	-3.68	0.78	0.73	2.47	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	104363	9607	104	0	552	0	0	logfile
✔	6GMH	0031	2022-12-22	2018-05-26	3.1	3.78	3.06	3.2	0.006	0.97	0.0	0.06	12.73	0.01	1.921	5.61	0.53	4.8	95.1	0.1	-2.86	0.83	0.81	2.87	3.3	0.005	0.68	0.0	0.04	14.74	0.00	1.965	11.33	0.33	5.1	94.8	0.0	0.04	0.71	0.84	0.84	2.43	50239	6397	30	106	525	0	0	logfile
✔	6BWD	7297	2022-12-14	2017-12-14	3.7	3.83	—	3.8	0.011	1.65	8.0	0.09	13.73	0.01	1.254	13.17	0.57	12.5	86.3	1.2	-5.69	0.64	0.76	1.55	3.8	0.003	1.06	0.0	0.04	16.32	0.00	1.980	15.83	0.47	10.0	89.2	0.7	-1.33	2.50	0.64	0.77	1.05	23187	2600	12	0	509	30	0	logfile
✔	5GAD	8000	2022-12-17	2015-11-24	3.7	4.17	—	3.9	0.009	1.11	1.0	0.05	15.93	0.01	1.737	9.28	10.34	3.5	96.5	0.1	-3.19	0.77	0.79	1.52	3.9	0.007	0.71	0.0	0.04	15.35	0.01	1.012	21.05	0.58	4.3	95.6	0.1	-0.41	2.14	0.81	0.88	1.48	98006	4087	49	3049	507	0	0	logfile
✘	6JEo	9807	2022-12-19	2019-02-06	3.3	3.44	—	3.4	0.009	1.14	0.0	0.06	18.11	0.02	1.212	7.53	0.24	4.8	95.2	0.0	-5.26	0.73	0.81	4.38	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	94576	8774	88	0	504	0	0	logfile
✔	5MMi	3531	2022-12-17	2016-12-10	3.2	3.30	—	3.2	0.008	1.15	0.0	0.05	16.64	0.01	1.753	7.97	9.25	5.3	94.4	0.3	-3.29	0.89	0.88	1.90	3.2	0.005	0.65	0.0	0.04	16.35	0.01	1.833	11.63	0.66	4.6	95.4	0.0	-1.08	2.06	0.88	0.86	1.61	95397	3769	56	3027	503	0	0	logfile
✘	5XNL	6741	2022-12-19	2017-05-23	2.7	2.75	—	2.8	0.013	1.60	0.0	0.09	15.86	0.02	1.207	10.25	0.08	2.1	97.9	0.0	-3.12	0.55	0.78	3.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	98986	9364	136	0	490	1076	0	logfile
✘	5XNM	6742	2022-12-19	2017-05-23	3.2	3.28	—	3.3	0.011	1.67	0.0	0.08	16.06	0.02	1.205	9.94	0.03	2.3	97.7	0.0	-2.60	0.71	0.82	3.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	92842	8712	90	0	486	0	0	logfile
✘	6C0F	7324	2022-12-19	2017-12-29	3.7	4.02	—	3.7	0.007	1.03	0.0	0.05	14.97	0.01	1.985	10.78	0.28	5.2	94.8	0.1	-2.72	0.82	0.82	1.34	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	91742	6845	46	1602	481	0	0	logfile
✘	6BWF	7298	2022-12-18	2017-12-14	4.1	4.19	—	4.2	0.008	1.49	2.0	0.07	12.82	0.01	2.204	12.32	0.59	12.1	86.6	1.3	-5.34	0.62	0.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22174	2584	4	0	480	0	0	logfile
✔	6ZYD	11557	2022-12-18	2020-07-31	3.0	3.62	2.76	3.4	0.017	1.20	0.0	0.12	17.41	0.01	2.269	4.88	0.00	5.1	94.9	0.0	-3.12	0.75	0.77	4.36	3.4	0.059	2.56	0.0	0.17	18.86	0.02	1.730	57.41	12.94	21.7	78.3	0.0	-6.10	1.47	0.79	0.86	3.23	31423	1792	14	0	476	0	14490	logfile
✔	5GAH	8004	2022-12-17	2015-11-26	3.8	3.97	—	3.9	0.008	1.10	0.0	0.05	15.97	0.01	1.737	8.39	11.31	3.3	96.7	0.1	-3.33	0.73	0.85	1.12	3.9	0.004	0.61	0.0	0.03	15.18	0.00	1.128	13.43	0.65	3.7	96.2	0.1	-0.58	1.17	0.73	0.87	1.36	94027	3595	46	3049	473	0	0	logfile
✔	5GAG	8003	2022-12-17	2015-11-26	3.8	3.95	—	3.8	0.007	1.04	1.0	0.05	15.71	0.00	1.789	8.25	9.03	3.0	96.9	0.1	-3.35	0.79	0.90	1.98	3.8	0.004	0.61	0.0	0.03	15.10	0.00	1.013	14.50	0.79	3.5	96.4	0.1	-0.35	0.69	0.78	0.87	1.98	94030	3598	46	3049	473	0	0	logfile
✘	7DZ7	30925	2022-12-19	2021-01-23	2.84	2.53	—	2.8	0.009	1.59	0.0	0.07	20.30	0.02	1.210	6.41	0.47	4.7	95.2	0.1	-2.58	0.67	0.77	3.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	69647	5998	55	0	471	0	0	logfile
✘	7DZ8	30926	2022-12-19	2021-01-23	3.16	3.25	—	3.2	0.011	1.68	1.0	0.07	20.65	0.02	1.209	8.52	0.19	5.7	94.3	0.0	-3.15	0.82	0.83	3.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	69460	5986	55	0	471	0	0	logfile
✔	7QCo	13898	2022-12-16	2021-11-24	3.7	3.89	3.86	3.7	0.006	0.93	0.0	0.05	21.59	0.02	1.932	24.35	9.61	13.9	86.0	0.2	-4.15	0.72	0.69	0.82	3.7	0.003	0.79	0.0	0.05	19.14	0.01	1.454	19.09	0.59	10.0	90.0	0.0	-1.49	0.80	0.73	0.72	0.62	90396	8812	78	0	462	0	0	logfile
✔	4UiS	2974	2022-12-12	2015-04-03	4.4	4.48	—	4.4	0.009	1.29	0.0	0.06	9.92	0.01	1.546	24.94	1.19	7.7	87.4	5.0	-2.00	0.50	0.56	—	4.4	0.003	0.80	0.0	0.04	12.02	0.00	2.089	16.52	0.00	10.1	88.5	1.5	-1.41	1.66	0.55	0.73	—	8518	791	5	0	458	0	0	logfile
✘	7F4V	31455	2022-12-19	2021-06-21	2.04	1.80	—	2.0	0.025	2.42	0.0	0.08	19.55	0.03	1.203	4.76	2.78	3.0	96.9	0.1	-2.15	0.70	0.83	6.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	67641	6336	78	0	453	402	0	logfile
✘	7D0J	30536	2022-12-19	2020-09-10	3.42	3.77	—	3.7	0.011	1.27	0.0	0.09	18.65	0.01	1.058	17.22	0.04	9.4	90.3	0.3	-2.31	0.77	0.79	2.46	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	68860	5923	56	0	453	0	0	logfile

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