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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 3JAU | 6366 | 2023-04-22 | 2015-06-24 | 4.8 | 4.76 | — | 6.0 | 0.027 | 2.66 | 660.0 | 0.16 | 14.74 | 0.02 | 1.686 | 10.72 | 1.90 | 4.6 | 94.1 | 1.3 | -2.16 | 0.21 | 0.38 | — | 5.4 | 0.003 | 0.70 | 0.0 | 0.04 | 13.62 | 0.00 | 2.034 | 12.63 | 0.00 | 4.6 | 95.0 | 0.4 | -1.07 | 1.45 | 0.24 | 0.57 | — | 114900 | 14700 | 180 | 0 | 0 | 0 | 0 | logfile |
✔ | 8CXM | 27060 | 2023-04-20 | 2022-05-21 | 3.21 | 3.69 | 3.21 | 3.6 | 0.003 | 0.50 | 0.0 | 0.03 | 14.84 | 0.00 | 2.093 | 8.38 | 0.06 | 4.1 | 95.9 | 0.0 | 3.68 | 0.56 | 0.87 | 1.34 | 3.5 | 0.003 | 0.53 | 0.0 | 0.03 | 16.26 | 0.00 | 2.108 | 6.36 | 0.15 | 3.9 | 96.1 | 0.0 | 4.62 | 1.14 | 0.58 | 0.89 | 1.41 | 109560 | 14685 | 55 | 0 | 0 | 0 | 0 | logfile |
✘ | 6JiU | 9836 | 2023-04-21 | 2019-02-23 | 4.2 | 4.52 | — | 4.2 | 0.006 | 1.01 | 9.0 | 0.05 | 15.68 | 0.01 | 2.218 | 10.69 | 0.51 | 10.3 | 89.5 | 0.2 | -5.44 | 0.78 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 112212 | 14684 | 20 | 0 | 24 | 0 | 0 | logfile |
✔ | 7YCX | 33741 | 2023-04-21 | 2022-07-02 | 4.18 | 4.23 | 4.26 | 4.0 | 0.004 | 0.63 | 1.0 | 0.04 | 14.07 | 0.00 | 1.722 | 11.71 | 0.18 | 5.5 | 94.3 | 0.2 | 0.51 | 0.85 | 0.76 | — | 4.0 | 0.003 | 0.64 | 0.0 | 0.04 | 14.37 | 0.00 | 1.812 | 12.31 | 0.02 | 4.7 | 95.2 | 0.1 | 0.81 | 0.47 | 0.87 | 0.80 | — | 113089 | 14682 | 42 | 104 | 69 | 0 | 0 | logfile |
✘ | 6JRS | 9880 | 2023-04-21 | 2019-04-05 | 3.7 | 3.86 | — | 3.7 | 0.010 | 1.08 | 0.0 | 0.06 | 16.39 | 0.01 | 2.225 | 8.77 | 0.90 | 12.4 | 87.2 | 0.3 | -5.87 | 0.74 | 0.80 | 1.78 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 112168 | 14652 | 20 | 0 | 24 | 0 | 0 | logfile |
✔ | 6QDV | 4525 | 2023-04-24 | 2019-01-03 | 3.3 | 3.34 | — | 3.3 | 0.008 | 1.15 | 4.0 | 0.08 | 15.82 | 0.01 | 0.962 | 10.58 | 2.45 | 5.0 | 94.6 | 0.3 | -3.15 | 0.53 | 0.72 | 2.12 | 3.3 | 0.003 | 0.66 | 0.0 | 0.04 | 16.97 | 0.00 | 1.913 | 14.47 | 0.47 | 4.6 | 95.4 | 0.1 | 0.41 | 1.45 | 0.51 | 0.66 | 1.86 | 121152 | 14611 | 60 | 348 | 18 | 0 | 0 | logfile |
✘ | 7W5B | 32321 | 2023-04-19 | 2021-11-29 | 4.3 | 4.80 | — | 4.3 | 0.012 | 1.56 | 60.0 | 0.10 | 14.18 | 0.01 | 1.346 | 16.34 | 2.51 | 5.8 | 93.5 | 0.7 | -3.06 | 0.65 | 0.57 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 106538 | 14610 | 62 | 416 | 19 | 0 | 0 | logfile |
✘ | 6JV2 | 9889 | 2023-04-21 | 2019-04-15 | 4.4 | 5.59 | — | 4.4 | 0.011 | 1.30 | 1.0 | 0.06 | 16.74 | 0.01 | 2.116 | 19.38 | 1.92 | 13.3 | 86.5 | 0.3 | -4.61 | 0.83 | 0.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 111080 | 14564 | 16 | 0 | 24 | 0 | 0 | logfile |
✔ | 6RVW | 4444 | 2023-04-21 | 2019-06-03 | 3.7 | 3.98 | — | 3.9 | 0.008 | 0.66 | 0.0 | 0.05 | 14.12 | 0.00 | 2.263 | 1.75 | 0.00 | 2.0 | 98.0 | 0.0 | -2.37 | 0.79 | 0.82 | 2.87 | 4.0 | 0.007 | 0.74 | 0.0 | 0.05 | 18.10 | 0.00 | 2.058 | 12.50 | 1.53 | 2.3 | 97.7 | 0.0 | -1.61 | 3.20 | 0.80 | 0.84 | 3.33 | 110208 | 14520 | 384 | 0 | 120 | 0 | 0 | logfile |
✔ | 6RVV | 4443 | 2023-04-21 | 2019-06-03 | 3.7 | 3.95 | — | 3.9 | 0.006 | 0.60 | 0.0 | 0.05 | 13.27 | 0.00 | 2.245 | 2.48 | 0.00 | 2.0 | 98.0 | 0.0 | -2.44 | 0.78 | 0.82 | 2.75 | 3.9 | 0.005 | 0.67 | 0.0 | 0.05 | 18.05 | 0.00 | 2.039 | 11.35 | 1.28 | 0.4 | 99.6 | 0.0 | -0.79 | 1.07 | 0.79 | 0.83 | 2.94 | 110208 | 14520 | 384 | 0 | 120 | 0 | 0 | logfile |
✔ | 6U5K | 20648 | 2023-04-21 | 2019-08-27 | 3.5 | 3.54 | — | 3.5 | 0.005 | 0.78 | 0.0 | 0.05 | 12.14 | 0.01 | 2.210 | 5.29 | 3.00 | 7.0 | 93.0 | 0.0 | -5.23 | 0.53 | 0.83 | 2.34 | 3.5 | 0.007 | 0.77 | 0.0 | 0.05 | 15.02 | 0.00 | 2.020 | 10.79 | 0.42 | 8.2 | 91.8 | 0.0 | -1.95 | 1.22 | 0.53 | 0.85 | 2.05 | 110106 | 14520 | 54 | 0 | 0 | 0 | 0 | logfile |
✔ | 7CF9 | 30343 | 2023-04-22 | 2020-06-24 | 4.7 | 4.24 | 5.21 | 4.0 | 0.006 | 1.24 | 0.0 | 0.06 | 16.01 | 0.01 | 1.538 | 5.47 | 1.67 | 6.2 | 93.7 | 0.1 | -4.86 | 0.79 | 0.68 | — | 4.0 | 0.003 | 0.76 | 0.0 | 0.04 | 13.67 | 0.00 | 2.032 | 14.49 | 0.00 | 5.5 | 94.5 | 0.0 | -2.02 | 1.79 | 0.81 | 0.74 | — | 116104 | 14416 | 12 | 0 | 1820 | 0 | 0 | logfile |
✔ | 6H6F | 0150 | 2023-04-22 | 2018-07-27 | 3.72 | 2.83 | — | 3.6 | 0.020 | 1.68 | 1.0 | 0.09 | 10.88 | 0.01 | 2.182 | 1.08 | 0.00 | 1.7 | 98.1 | 0.2 | 0.96 | 0.83 | 0.77 | 1.63 | 3.5 | 0.003 | 0.64 | 0.0 | 0.04 | 15.30 | 0.00 | 2.091 | 11.57 | 0.19 | 2.5 | 97.5 | 0.0 | 1.42 | 0.90 | 0.84 | 0.77 | 1.43 | 114303 | 14388 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 6JGZ | 9824 | 2023-04-21 | 2019-02-16 | 4.6 | 4.96 | — | 4.6 | 0.007 | 1.13 | 0.0 | 0.06 | 11.54 | 0.01 | 2.171 | 11.98 | 0.73 | 11.3 | 88.3 | 0.4 | -4.06 | 0.78 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 109824 | 14368 | 12 | 0 | 4 | 0 | 0 | logfile |
✘ | 6JHN | 9826 | 2023-04-21 | 2019-02-18 | 4.5 | 7.49 | — | 4.4 | 0.010 | 1.23 | 0.0 | 0.06 | 16.52 | 0.01 | 2.114 | 19.26 | 1.44 | 13.9 | 85.8 | 0.3 | -4.27 | 0.85 | 0.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 109488 | 14332 | 12 | 0 | 12 | 0 | 0 | logfile |
✘ | 6Ji0 | 9831 | 2023-04-21 | 2019-02-19 | 4.2 | 4.40 | — | 4.2 | 0.007 | 1.15 | 0.0 | 0.06 | 11.77 | 0.01 | 2.204 | 7.43 | 0.86 | 12.9 | 86.9 | 0.3 | -4.44 | 0.73 | 0.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 109772 | 14332 | 12 | 0 | 16 | 0 | 0 | logfile |
✘ | 6JRR | 9879 | 2023-04-20 | 2019-04-05 | 3.9 | 4.09 | — | 3.9 | 0.010 | 1.14 | 4.0 | 0.06 | 15.90 | 0.01 | 1.827 | 8.44 | 0.80 | 10.2 | 89.5 | 0.2 | -5.20 | 0.76 | 0.81 | 1.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 109132 | 14268 | 12 | 0 | 16 | 0 | 0 | logfile |
✘ | 6JH6 | 9825 | 2023-04-20 | 2019-02-17 | 4.8 | 5.31 | — | 4.8 | 0.006 | 1.07 | 1.0 | 0.05 | 11.37 | 0.01 | 2.197 | 12.11 | 0.58 | 10.8 | 88.9 | 0.3 | -4.03 | 0.79 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 108924 | 14244 | 12 | 0 | 8 | 0 | 0 | logfile |
✔ | 6U5F | 20644 | 2023-04-19 | 2019-08-27 | 3.8 | 3.74 | — | 3.7 | 0.007 | 1.01 | 0.0 | 0.06 | 10.02 | 0.01 | 2.238 | 6.14 | 0.38 | 11.0 | 89.0 | 0.0 | -5.43 | 0.61 | 0.81 | 3.06 | 3.7 | 0.004 | 0.74 | 0.0 | 0.05 | 15.10 | 0.00 | 1.968 | 12.19 | 0.69 | 9.5 | 90.5 | 0.0 | -2.48 | 1.25 | 0.62 | 0.82 | 2.51 | 107550 | 14232 | 54 | 0 | 0 | 0 | 0 | logfile |
✔ | 6H6E | 0149 | 2023-04-21 | 2018-07-27 | 3.95 | 3.43 | — | 3.8 | 0.021 | 1.74 | 1.0 | 0.10 | 10.97 | 0.01 | 1.834 | 1.64 | 0.01 | 1.9 | 97.9 | 0.3 | 0.48 | 0.79 | 0.80 | 1.58 | 3.7 | 0.004 | 0.75 | 0.0 | 0.04 | 16.20 | 0.00 | 2.005 | 16.29 | 0.50 | 3.2 | 96.7 | 0.1 | 0.97 | 1.89 | 0.79 | 0.82 | 1.48 | 112922 | 14231 | 6 | 0 | 0 | 0 | 0 | logfile |