Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7KH1	22873	2022-12-17	2020-10-19	3.2	3.17	—	3.5	0.010	0.97	0.0	0.05	14.82	0.01	2.008	25.67	0.66	11.2	88.8	0.0	-2.62	0.51	0.81	2.50	3.5	0.005	0.71	0.0	0.05	16.82	0.00	2.046	18.45	0.84	7.8	92.2	0.0	-1.42	0.46	0.51	0.82	1.93	97344	12588	48	0	0	0	0	logfile
✔	7SN7	25213	2022-12-16	2021-10-27	4.2	4.22	—	4.1	0.003	0.63	0.0	0.04	13.41	0.00	2.099	13.03	0.07	8.3	91.7	0.0	0.65	0.47	0.76	—	4.1	0.005	0.73	0.0	0.04	13.99	0.00	2.026	15.43	0.04	10.3	89.6	0.0	-0.05	0.66	0.49	0.79	—	90482	12558	23	0	0	0	0	logfile
✔	7oTT	13066	2022-12-17	2021-06-10	3.84	4.10	3.66	3.9	0.003	0.71	0.0	0.05	13.11	0.00	1.800	14.96	0.00	2.9	97.1	0.0	-0.97	0.81	0.84	0.87	3.9	0.004	0.82	0.0	0.05	15.04	0.01	2.206	13.75	0.34	4.8	95.2	0.0	-0.39	0.72	0.82	0.86	0.81	94980	12540	60	0	0	0	0	logfile
✔	6U7M	20673	2022-12-17	2019-09-03	3.8	4.00	—	4.0	0.004	0.78	0.0	0.05	9.33	0.01	2.321	2.88	0.27	8.3	91.7	0.0	-4.11	0.57	0.81	2.42	4.0	0.003	0.66	0.0	0.04	13.58	0.00	2.089	8.24	0.19	6.6	93.4	0.0	-1.96	2.05	0.58	0.83	2.34	99420	12510	30	0	0	0	0	logfile
✔	6TGY	10501	2022-12-17	2019-11-18	3.5	3.59	3.49	3.5	0.007	1.10	0.0	0.05	10.46	0.01	2.359	1.88	0.00	16.6	83.4	0.0	-5.42	0.69	0.73	3.89	3.5	0.006	0.67	0.0	0.04	14.80	0.01	2.126	6.92	0.59	13.9	86.1	0.0	-1.15	0.75	0.76	0.83	2.91	96960	12480	120	0	0	0	0	logfile
✔	6RW6	10033	2022-12-17	2019-06-04	2.75	2.81	—	2.7	0.011	0.96	0.0	0.06	9.75	0.01	2.148	4.26	0.00	2.2	97.8	0.0	-3.68	0.85	0.87	4.43	2.7	0.003	0.58	0.0	0.04	14.81	0.00	2.096	7.56	1.31	2.1	97.9	0.0	1.74	3.28	0.87	0.90	3.48	98645	12425	5	0	0	0	0	logfile
✘	6YBA	10768	2022-12-19	2020-03-16	4.0	4.06	—	4.0	0.007	1.21	0.0	0.06	11.33	0.01	2.216	8.75	0.60	14.7	85.2	0.1	-4.78	0.43	0.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	98037	12388	26	0	0	0	0	logfile
✔	7ETo	31301	2022-12-19	2021-05-13	4.0	3.89	—	4.0	0.007	0.94	0.0	0.06	14.66	0.01	2.228	7.32	0.70	6.6	93.4	0.0	-4.12	0.40	0.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	98674	12386	26	0	0	0	0	logfile
✔	5WJT	8847	2022-12-16	2017-07-24	3.8	3.65	—	3.6	0.010	1.19	0.0	0.05	11.04	0.01	1.626	13.14	0.41	10.7	89.3	0.0	-4.67	0.57	0.78	1.92	3.6	0.003	0.78	0.0	0.04	16.25	0.00	2.129	16.25	0.40	9.2	90.5	0.3	1.42	4.10	0.58	0.81	1.00	92947	12382	41	0	0	0	0	logfile
✔	6E8G	9005	2022-12-19	2018-07-29	2.9	3.09	2.96	3.0	0.006	0.89	0.0	0.05	10.62	0.01	2.201	2.53	0.34	0.9	99.1	0.0	-1.52	0.59	0.84	2.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	97272	12276	72	0	0	0	0	logfile
✔	6L7E	0843	2022-12-17	2019-11-01	3.2	3.28	—	3.2	0.004	0.78	0.0	0.05	8.54	0.01	2.217	3.34	0.05	3.3	96.7	0.0	-4.72	0.78	0.85	3.48	3.2	0.003	0.55	0.0	0.04	14.23	0.00	2.055	6.31	0.15	2.6	97.4	0.0	1.25	2.01	0.79	0.88	3.28	97400	12270	5	0	0	0	0	logfile
✔	6RPK	4977	2022-12-19	2019-05-14	2.84	2.92	—	2.9	0.006	0.83	0.0	0.05	13.25	0.01	0.152	22.63	0.00	5.5	94.0	0.5	-3.71	0.71	0.83	2.92	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	103090	12261	61	0	0	0	0	logfile
✔	8E01	27812	2022-12-16	2022-08-08	3.4	3.80	3.71	3.8	0.002	0.56	0.0	0.04	17.85	0.00	0.307	13.45	0.41	2.0	98.0	0.0	-0.28	0.62	0.59	0.19	3.8	0.006	0.94	14.0	0.06	17.98	0.01	1.639	22.45	0.64	5.4	94.5	0.1	-0.49	1.37	0.72	0.77	1.33	92598	12261	61	0	0	0	0	logfile
✘	8ADL	15364	2022-12-19	2022-07-08	2.95	2.79	3.17	2.1	0.003	0.59	0.0	0.05	13.45	0.01	2.230	4.54	0.00	3.4	96.6	0.0	-1.37	0.73	0.71	1.51	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	98972	12238	30	0	28	0	0	logfile
✔	7B3Y	11997	2022-12-16	2020-12-01	3.7	4.33	—	4.0	0.014	1.43	60.0	0.11	14.41	0.01	2.031	10.48	4.35	2.0	98.0	0.0	-1.02	0.75	0.67	1.09	4.0	0.003	0.68	0.0	0.05	14.87	0.00	2.189	12.39	0.12	1.5	98.5	0.0	1.32	3.00	0.88	0.84	1.28	90960	12120	60	0	0	0	0	logfile
✘	6TZ5	20589	2022-12-19	2019-08-10	3.1	3.56	3.05	3.7	0.003	0.51	0.0	0.04	14.11	0.00	2.220	7.23	0.00	1.1	98.9	0.0	0.24	0.40	0.55	-0.21	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	93500	12104	68	0	0	0	0	logfile
✘	7W59	32317	2022-12-19	2021-11-29	3.6	3.96	—	3.6	0.013	1.67	139.0	0.11	14.72	0.01	1.346	16.25	3.80	5.6	93.7	0.7	-2.96	0.66	0.63	1.87	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	92315	12086	56	416	18	0	0	logfile
✘	6RPo	4979	2022-12-19	2019-05-14	2.39	2.44	—	2.4	0.006	0.92	0.0	0.05	15.02	0.01	2.326	7.31	0.00	3.7	95.8	0.5	-2.67	0.72	0.86	4.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	101400	12060	60	0	0	0	0	logfile
✔	6QBX	4493	2022-12-17	2018-12-24	4.2	4.27	4.22	4.2	0.007	1.16	0.0	0.85	11.43	0.01	1.997	7.87	0.40	11.2	88.6	0.1	-3.98	0.64	0.71	—	4.2	0.007	1.46	0.0	0.26	13.55	0.01	1.851	17.82	0.04	9.4	90.6	0.0	-1.25	1.01	0.65	0.74	—	97049	12043	83	0	73	0	0	logfile
✔	6QC3	4495	2022-12-17	2018-12-26	4.2	4.28	4.21	4.2	0.010	1.32	1.0	0.85	12.07	0.01	1.873	8.94	0.75	11.7	88.1	0.1	-3.94	0.67	0.75	—	4.2	0.007	1.49	0.0	0.26	13.46	0.01	1.333	19.21	0.05	10.1	89.9	0.0	-1.21	1.75	0.68	0.77	—	96897	12010	84	0	77	0	0	logfile

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