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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7KH1 | 22873 | 2022-12-17 | 2020-10-19 | 3.2 | 3.17 | — | 3.5 | 0.010 | 0.97 | 0.0 | 0.05 | 14.82 | 0.01 | 2.008 | 25.67 | 0.66 | 11.2 | 88.8 | 0.0 | -2.62 | 0.51 | 0.81 | 2.50 | 3.5 | 0.005 | 0.71 | 0.0 | 0.05 | 16.82 | 0.00 | 2.046 | 18.45 | 0.84 | 7.8 | 92.2 | 0.0 | -1.42 | 0.46 | 0.51 | 0.82 | 1.93 | 97344 | 12588 | 48 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SN7 | 25213 | 2022-12-16 | 2021-10-27 | 4.2 | 4.22 | — | 4.1 | 0.003 | 0.63 | 0.0 | 0.04 | 13.41 | 0.00 | 2.099 | 13.03 | 0.07 | 8.3 | 91.7 | 0.0 | 0.65 | 0.47 | 0.76 | — | 4.1 | 0.005 | 0.73 | 0.0 | 0.04 | 13.99 | 0.00 | 2.026 | 15.43 | 0.04 | 10.3 | 89.6 | 0.0 | -0.05 | 0.66 | 0.49 | 0.79 | — | 90482 | 12558 | 23 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oTT | 13066 | 2022-12-17 | 2021-06-10 | 3.84 | 4.10 | 3.66 | 3.9 | 0.003 | 0.71 | 0.0 | 0.05 | 13.11 | 0.00 | 1.800 | 14.96 | 0.00 | 2.9 | 97.1 | 0.0 | -0.97 | 0.81 | 0.84 | 0.87 | 3.9 | 0.004 | 0.82 | 0.0 | 0.05 | 15.04 | 0.01 | 2.206 | 13.75 | 0.34 | 4.8 | 95.2 | 0.0 | -0.39 | 0.72 | 0.82 | 0.86 | 0.81 | 94980 | 12540 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 6U7M | 20673 | 2022-12-17 | 2019-09-03 | 3.8 | 4.00 | — | 4.0 | 0.004 | 0.78 | 0.0 | 0.05 | 9.33 | 0.01 | 2.321 | 2.88 | 0.27 | 8.3 | 91.7 | 0.0 | -4.11 | 0.57 | 0.81 | 2.42 | 4.0 | 0.003 | 0.66 | 0.0 | 0.04 | 13.58 | 0.00 | 2.089 | 8.24 | 0.19 | 6.6 | 93.4 | 0.0 | -1.96 | 2.05 | 0.58 | 0.83 | 2.34 | 99420 | 12510 | 30 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TGY | 10501 | 2022-12-17 | 2019-11-18 | 3.5 | 3.59 | 3.49 | 3.5 | 0.007 | 1.10 | 0.0 | 0.05 | 10.46 | 0.01 | 2.359 | 1.88 | 0.00 | 16.6 | 83.4 | 0.0 | -5.42 | 0.69 | 0.73 | 3.89 | 3.5 | 0.006 | 0.67 | 0.0 | 0.04 | 14.80 | 0.01 | 2.126 | 6.92 | 0.59 | 13.9 | 86.1 | 0.0 | -1.15 | 0.75 | 0.76 | 0.83 | 2.91 | 96960 | 12480 | 120 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RW6 | 10033 | 2022-12-17 | 2019-06-04 | 2.75 | 2.81 | — | 2.7 | 0.011 | 0.96 | 0.0 | 0.06 | 9.75 | 0.01 | 2.148 | 4.26 | 0.00 | 2.2 | 97.8 | 0.0 | -3.68 | 0.85 | 0.87 | 4.43 | 2.7 | 0.003 | 0.58 | 0.0 | 0.04 | 14.81 | 0.00 | 2.096 | 7.56 | 1.31 | 2.1 | 97.9 | 0.0 | 1.74 | 3.28 | 0.87 | 0.90 | 3.48 | 98645 | 12425 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 6YBA | 10768 | 2022-12-19 | 2020-03-16 | 4.0 | 4.06 | — | 4.0 | 0.007 | 1.21 | 0.0 | 0.06 | 11.33 | 0.01 | 2.216 | 8.75 | 0.60 | 14.7 | 85.2 | 0.1 | -4.78 | 0.43 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 98037 | 12388 | 26 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ETo | 31301 | 2022-12-19 | 2021-05-13 | 4.0 | 3.89 | — | 4.0 | 0.007 | 0.94 | 0.0 | 0.06 | 14.66 | 0.01 | 2.228 | 7.32 | 0.70 | 6.6 | 93.4 | 0.0 | -4.12 | 0.40 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 98674 | 12386 | 26 | 0 | 0 | 0 | 0 | logfile |
✔ | 5WJT | 8847 | 2022-12-16 | 2017-07-24 | 3.8 | 3.65 | — | 3.6 | 0.010 | 1.19 | 0.0 | 0.05 | 11.04 | 0.01 | 1.626 | 13.14 | 0.41 | 10.7 | 89.3 | 0.0 | -4.67 | 0.57 | 0.78 | 1.92 | 3.6 | 0.003 | 0.78 | 0.0 | 0.04 | 16.25 | 0.00 | 2.129 | 16.25 | 0.40 | 9.2 | 90.5 | 0.3 | 1.42 | 4.10 | 0.58 | 0.81 | 1.00 | 92947 | 12382 | 41 | 0 | 0 | 0 | 0 | logfile |
✔ | 6E8G | 9005 | 2022-12-19 | 2018-07-29 | 2.9 | 3.09 | 2.96 | 3.0 | 0.006 | 0.89 | 0.0 | 0.05 | 10.62 | 0.01 | 2.201 | 2.53 | 0.34 | 0.9 | 99.1 | 0.0 | -1.52 | 0.59 | 0.84 | 2.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 97272 | 12276 | 72 | 0 | 0 | 0 | 0 | logfile |
✔ | 6L7E | 0843 | 2022-12-17 | 2019-11-01 | 3.2 | 3.28 | — | 3.2 | 0.004 | 0.78 | 0.0 | 0.05 | 8.54 | 0.01 | 2.217 | 3.34 | 0.05 | 3.3 | 96.7 | 0.0 | -4.72 | 0.78 | 0.85 | 3.48 | 3.2 | 0.003 | 0.55 | 0.0 | 0.04 | 14.23 | 0.00 | 2.055 | 6.31 | 0.15 | 2.6 | 97.4 | 0.0 | 1.25 | 2.01 | 0.79 | 0.88 | 3.28 | 97400 | 12270 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RPK | 4977 | 2022-12-19 | 2019-05-14 | 2.84 | 2.92 | — | 2.9 | 0.006 | 0.83 | 0.0 | 0.05 | 13.25 | 0.01 | 0.152 | 22.63 | 0.00 | 5.5 | 94.0 | 0.5 | -3.71 | 0.71 | 0.83 | 2.92 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 103090 | 12261 | 61 | 0 | 0 | 0 | 0 | logfile |
✔ | 8E01 | 27812 | 2022-12-16 | 2022-08-08 | 3.4 | 3.80 | 3.71 | 3.8 | 0.002 | 0.56 | 0.0 | 0.04 | 17.85 | 0.00 | 0.307 | 13.45 | 0.41 | 2.0 | 98.0 | 0.0 | -0.28 | 0.62 | 0.59 | 0.19 | 3.8 | 0.006 | 0.94 | 14.0 | 0.06 | 17.98 | 0.01 | 1.639 | 22.45 | 0.64 | 5.4 | 94.5 | 0.1 | -0.49 | 1.37 | 0.72 | 0.77 | 1.33 | 92598 | 12261 | 61 | 0 | 0 | 0 | 0 | logfile |
✘ | 8ADL | 15364 | 2022-12-19 | 2022-07-08 | 2.95 | 2.79 | 3.17 | 2.1 | 0.003 | 0.59 | 0.0 | 0.05 | 13.45 | 0.01 | 2.230 | 4.54 | 0.00 | 3.4 | 96.6 | 0.0 | -1.37 | 0.73 | 0.71 | 1.51 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 98972 | 12238 | 30 | 0 | 28 | 0 | 0 | logfile |
✔ | 7B3Y | 11997 | 2022-12-16 | 2020-12-01 | 3.7 | 4.33 | — | 4.0 | 0.014 | 1.43 | 60.0 | 0.11 | 14.41 | 0.01 | 2.031 | 10.48 | 4.35 | 2.0 | 98.0 | 0.0 | -1.02 | 0.75 | 0.67 | 1.09 | 4.0 | 0.003 | 0.68 | 0.0 | 0.05 | 14.87 | 0.00 | 2.189 | 12.39 | 0.12 | 1.5 | 98.5 | 0.0 | 1.32 | 3.00 | 0.88 | 0.84 | 1.28 | 90960 | 12120 | 60 | 0 | 0 | 0 | 0 | logfile |
✘ | 6TZ5 | 20589 | 2022-12-19 | 2019-08-10 | 3.1 | 3.56 | 3.05 | 3.7 | 0.003 | 0.51 | 0.0 | 0.04 | 14.11 | 0.00 | 2.220 | 7.23 | 0.00 | 1.1 | 98.9 | 0.0 | 0.24 | 0.40 | 0.55 | -0.21 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 93500 | 12104 | 68 | 0 | 0 | 0 | 0 | logfile |
✘ | 7W59 | 32317 | 2022-12-19 | 2021-11-29 | 3.6 | 3.96 | — | 3.6 | 0.013 | 1.67 | 139.0 | 0.11 | 14.72 | 0.01 | 1.346 | 16.25 | 3.80 | 5.6 | 93.7 | 0.7 | -2.96 | 0.66 | 0.63 | 1.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 92315 | 12086 | 56 | 416 | 18 | 0 | 0 | logfile |
✘ | 6RPo | 4979 | 2022-12-19 | 2019-05-14 | 2.39 | 2.44 | — | 2.4 | 0.006 | 0.92 | 0.0 | 0.05 | 15.02 | 0.01 | 2.326 | 7.31 | 0.00 | 3.7 | 95.8 | 0.5 | -2.67 | 0.72 | 0.86 | 4.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 101400 | 12060 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 6QBX | 4493 | 2022-12-17 | 2018-12-24 | 4.2 | 4.27 | 4.22 | 4.2 | 0.007 | 1.16 | 0.0 | 0.85 | 11.43 | 0.01 | 1.997 | 7.87 | 0.40 | 11.2 | 88.6 | 0.1 | -3.98 | 0.64 | 0.71 | — | 4.2 | 0.007 | 1.46 | 0.0 | 0.26 | 13.55 | 0.01 | 1.851 | 17.82 | 0.04 | 9.4 | 90.6 | 0.0 | -1.25 | 1.01 | 0.65 | 0.74 | — | 97049 | 12043 | 83 | 0 | 73 | 0 | 0 | logfile |
✔ | 6QC3 | 4495 | 2022-12-17 | 2018-12-26 | 4.2 | 4.28 | 4.21 | 4.2 | 0.010 | 1.32 | 1.0 | 0.85 | 12.07 | 0.01 | 1.873 | 8.94 | 0.75 | 11.7 | 88.1 | 0.1 | -3.94 | 0.67 | 0.75 | — | 4.2 | 0.007 | 1.49 | 0.0 | 0.26 | 13.46 | 0.01 | 1.333 | 19.21 | 0.05 | 10.1 | 89.9 | 0.0 | -1.21 | 1.75 | 0.68 | 0.77 | — | 96897 | 12010 | 84 | 0 | 77 | 0 | 0 | logfile |