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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7W3C | 32277 | 2023-12-08 | 2021-11-25 | 3.4 | 4.55 | — | 3.0 | 0.004 | 0.75 | 0.0 | 0.05 | 13.70 | 0.01 | 2.077 | 5.67 | 0.13 | 6.4 | 93.5 | 0.1 | -0.85 | 0.82 | 0.79 | 2.02 | 3.0 | 0.004 | 0.63 | 0.0 | 0.04 | 15.04 | 0.00 | 2.043 | 11.45 | 0.16 | 6.6 | 93.3 | 0.1 | 0.72 | 0.40 | 0.83 | 0.82 | 1.62 | 110747 | 14074 | 55 | 0 | 42 | 0 | 0 | logfile |
✔ | 7W3H | 32280 | 2023-12-08 | 2021-11-25 | 3.2 | 4.38 | — | 2.8 | 0.005 | 0.78 | 0.0 | 0.05 | 14.20 | 0.01 | 1.772 | 5.60 | 0.24 | 6.9 | 93.0 | 0.1 | -0.71 | 0.86 | 0.84 | 2.30 | 2.8 | 0.004 | 0.60 | 0.0 | 0.04 | 15.05 | 0.00 | 1.923 | 10.75 | 0.13 | 6.8 | 93.1 | 0.1 | 0.85 | 0.75 | 0.87 | 0.86 | 1.88 | 110771 | 14074 | 55 | 0 | 46 | 0 | 0 | logfile |
✔ | 7W3J | 32282 | 2023-12-08 | 2021-11-25 | 3.5 | 4.46 | — | 3.0 | 0.005 | 0.84 | 0.0 | 0.05 | 14.85 | 0.01 | 1.739 | 6.46 | 0.55 | 6.9 | 93.0 | 0.1 | -1.22 | 0.83 | 0.81 | 1.76 | 3.0 | 0.004 | 0.65 | 0.0 | 0.04 | 15.76 | 0.00 | 2.041 | 12.46 | 0.24 | 6.7 | 93.3 | 0.0 | 0.34 | 0.78 | 0.87 | 0.86 | 1.53 | 110559 | 14071 | 55 | 0 | 7 | 0 | 0 | logfile |
✔ | 7W3i | 32281 | 2023-12-08 | 2021-11-25 | 3.5 | 4.43 | — | 2.9 | 0.005 | 0.82 | 0.0 | 0.05 | 14.74 | 0.01 | 1.702 | 5.71 | 0.26 | 6.7 | 93.2 | 0.1 | -1.17 | 0.79 | 0.72 | 1.86 | 3.0 | 0.003 | 0.63 | 0.0 | 0.04 | 16.08 | 0.00 | 1.997 | 12.20 | 0.21 | 6.8 | 93.2 | 0.0 | 0.08 | 0.81 | 0.82 | 0.78 | 1.55 | 110481 | 14054 | 55 | 0 | 7 | 0 | 0 | logfile |
✔ | 6W1N | 21513 | 2023-12-07 | 2020-03-04 | 4.0 | 4.43 | 4.16 | 4.1 | 0.002 | 0.55 | 0.0 | 0.04 | 12.17 | 0.00 | 2.226 | 6.50 | 0.41 | 1.4 | 98.6 | 0.0 | -0.42 | 0.72 | 0.75 | — | 4.1 | 0.003 | 0.76 | 0.0 | 0.04 | 14.15 | 0.00 | 2.112 | 11.82 | 0.29 | 2.8 | 97.2 | 0.0 | 0.86 | 0.75 | 0.74 | 0.80 | — | 105232 | 13984 | 12 | 0 | 1320 | 0 | 0 | logfile |
✔ | 8EQN | 28540 | 2023-12-08 | 2022-10-08 | 3.7 | 3.82 | 3.76 | 3.8 | 0.019 | 1.63 | 0.0 | 0.09 | 10.32 | 0.01 | 2.390 | 0.43 | 0.00 | 1.3 | 98.7 | 0.0 | 1.44 | 0.79 | 0.86 | 3.46 | 3.7 | 0.006 | 0.72 | 0.0 | 0.05 | 15.42 | 0.00 | 2.171 | 9.63 | 0.25 | 3.4 | 96.6 | 0.0 | 1.47 | 0.92 | 0.79 | 0.87 | 2.46 | 107700 | 13980 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 7W3B | 32276 | 2023-12-08 | 2021-11-25 | 3.6 | 4.26 | — | 3.0 | 0.003 | 0.79 | 0.0 | 0.05 | 13.94 | 0.01 | 2.122 | 5.53 | 0.12 | 6.3 | 93.6 | 0.1 | -0.88 | 0.79 | 0.73 | 1.63 | 3.0 | 0.003 | 0.62 | 0.0 | 0.04 | 15.31 | 0.00 | 2.051 | 11.38 | 0.11 | 6.0 | 93.9 | 0.0 | 0.21 | 0.80 | 0.81 | 0.76 | 1.42 | 109441 | 13915 | 54 | 0 | 33 | 0 | 0 | logfile |
✘ | 5GUP | 9539 | 2023-12-08 | 2016-08-30 | 4.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 109982 | 13895 | 107 | 0 | 77 | 0 | 0 | logfile |
✔ | 7EGB | 31111 | 2023-12-08 | 2021-03-24 | 3.3 | 3.51 | — | 34.0 | 0.008 | 1.11 | 62.0 | 0.07 | 15.49 | 0.01 | 1.322 | 21.13 | 3.22 | 7.3 | 91.9 | 0.8 | -3.64 | 0.32 | 0.02 | 0.13 | 10.0 | 0.004 | 0.84 | 0.0 | 0.05 | 16.63 | 0.01 | 1.826 | 17.71 | 0.34 | 7.6 | 92.2 | 0.2 | -0.96 | 1.10 | 0.42 | 0.20 | 0.10 | 113098 | 13887 | 63 | 138 | 18 | 0 | 0 | logfile |
✔ | 7W3M | 32284 | 2023-12-08 | 2021-11-25 | 3.5 | 4.51 | — | 3.0 | 0.003 | 0.78 | 0.0 | 0.05 | 14.17 | 0.01 | 1.953 | 5.95 | 0.14 | 6.1 | 93.8 | 0.1 | -1.11 | 0.79 | 0.75 | 1.86 | 3.0 | 0.003 | 0.62 | 0.0 | 0.04 | 15.37 | 0.00 | 2.047 | 12.62 | 0.20 | 6.6 | 93.4 | 0.0 | 0.33 | 0.40 | 0.82 | 0.77 | 1.74 | 109020 | 13879 | 53 | 0 | 5 | 0 | 0 | logfile |
✔ | 7EGC | 31112 | 2023-12-08 | 2021-03-24 | 3.9 | 3.72 | — | 4.9 | 0.008 | 1.13 | 76.0 | 0.08 | 15.52 | 0.01 | 1.402 | 24.31 | 3.39 | 7.3 | 91.9 | 0.8 | -3.59 | 0.43 | 0.10 | 0.10 | 3.1 | 0.004 | 0.81 | 0.0 | 0.05 | 16.63 | 0.00 | 1.956 | 17.03 | 0.26 | 6.3 | 93.5 | 0.2 | -0.73 | 1.25 | 0.51 | 0.31 | 0.56 | 113129 | 13879 | 63 | 142 | 18 | 0 | 0 | logfile |
✔ | 5KMG | 8266 | 2023-12-08 | 2016-06-27 | 3.5 | 4.13 | — | 4.0 | 0.019 | 1.34 | 0.0 | 0.10 | 13.69 | 0.02 | 1.894 | 3.71 | 0.00 | 5.8 | 92.0 | 2.2 | -1.01 | 0.49 | 0.75 | 2.38 | 4.0 | 0.003 | 0.72 | 0.0 | 0.04 | 17.25 | 0.00 | 1.965 | 12.24 | 0.33 | 3.3 | 96.6 | 0.0 | 1.32 | 1.03 | 0.46 | 0.79 | 2.18 | 111594 | 13860 | 70 | 14 | 42 | 0 | 0 | logfile |
✘ | 7DGR | 30674 | 2023-12-07 | 2020-11-12 | 4.6 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 107305 | 13811 | 102 | 0 | 37 | 0 | 0 | logfile |
✔ | 7SC7 | 25028 | 2023-12-07 | 2021-09-27 | 2.8 | 3.66 | — | 3.3 | 0.007 | 1.08 | 1.0 | 0.06 | 14.60 | 0.01 | 2.240 | 6.50 | 1.49 | 2.4 | 97.6 | 0.0 | -1.25 | 0.73 | 0.87 | 1.85 | 3.2 | 0.004 | 0.98 | 1.0 | 0.05 | 16.59 | 0.01 | 2.080 | 23.26 | 2.39 | 3.2 | 96.8 | 0.0 | 0.68 | 1.26 | 0.72 | 0.88 | 1.53 | 107930 | 13756 | 156 | 0 | 72 | 0 | 0 | logfile |
✔ | 7SQT | 25394 | 2023-12-07 | 2021-11-06 | 4.0 | 7.13 | 4.01 | 3.5 | 0.010 | 0.70 | 0.0 | 0.05 | 15.78 | 0.01 | 0.902 | 2.31 | 1.25 | 2.5 | 97.5 | 0.0 | 1.39 | 0.94 | 0.84 | — | 3.4 | 0.003 | 0.76 | 0.0 | 0.04 | 15.49 | 0.00 | 2.135 | 11.69 | 0.18 | 2.3 | 97.7 | 0.0 | 1.50 | 3.03 | 0.93 | 0.86 | — | 107136 | 13752 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 6CT0 | 7610 | 2023-12-07 | 2018-03-21 | 3.1 | 3.17 | — | 3.2 | 0.010 | 1.57 | 0.0 | 0.07 | 17.75 | 0.01 | 2.273 | 14.28 | 17.87 | 2.7 | 97.3 | 0.0 | -2.00 | 0.74 | 0.86 | 2.24 | 3.1 | 0.005 | 0.71 | 0.0 | 0.05 | 16.72 | 0.00 | 2.109 | 11.44 | 0.25 | 2.2 | 97.8 | 0.0 | 0.95 | 1.93 | 0.73 | 0.84 | 1.44 | 105600 | 13740 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SUE | 10312 | 2023-12-07 | 2019-09-13 | 3.4 | 3.48 | 3.43 | 3.3 | 0.021 | 1.72 | 5.0 | 0.10 | 10.89 | 0.01 | 2.214 | 1.22 | 0.01 | 2.1 | 97.7 | 0.3 | 0.31 | 0.86 | 0.81 | 2.68 | 3.3 | 0.003 | 0.64 | 0.0 | 0.04 | 14.76 | 0.00 | 2.069 | 11.07 | 0.24 | 3.6 | 96.4 | 0.1 | 0.81 | 1.39 | 0.87 | 0.84 | 2.24 | 108270 | 13628 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SUF | 10313 | 2023-12-07 | 2019-09-13 | 3.4 | 3.32 | — | 3.3 | 0.021 | 1.77 | 6.0 | 0.10 | 10.78 | 0.01 | 2.186 | 1.73 | 0.00 | 2.4 | 97.3 | 0.3 | -0.46 | 0.80 | 0.80 | 2.93 | 3.3 | 0.004 | 0.66 | 1.0 | 0.04 | 14.92 | 0.00 | 1.996 | 10.75 | 0.15 | 4.0 | 96.0 | 0.0 | 0.49 | 1.32 | 0.82 | 0.84 | 2.61 | 108112 | 13607 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7W38 | 32273 | 2023-12-07 | 2021-11-25 | 3.1 | 4.31 | — | 2.8 | 0.004 | 0.80 | 0.0 | 0.05 | 14.03 | 0.01 | 1.750 | 5.47 | 0.18 | 5.7 | 94.2 | 0.1 | -0.59 | 0.84 | 0.80 | 2.24 | 2.8 | 0.003 | 0.59 | 0.0 | 0.04 | 15.22 | 0.00 | 1.842 | 10.01 | 0.22 | 5.9 | 94.1 | 0.1 | 0.82 | 0.76 | 0.87 | 0.88 | 1.84 | 106178 | 13539 | 55 | 0 | 13 | 0 | 0 | logfile |
✔ | 7W39 | 32274 | 2023-12-07 | 2021-11-25 | 3.2 | 4.39 | — | 2.8 | 0.004 | 0.81 | 0.0 | 0.05 | 13.53 | 0.01 | 1.455 | 5.26 | 0.15 | 5.9 | 94.1 | 0.0 | -0.76 | 0.83 | 0.81 | 2.04 | 2.8 | 0.003 | 0.59 | 0.0 | 0.04 | 14.78 | 0.00 | 1.896 | 9.93 | 0.20 | 5.8 | 94.1 | 0.0 | 0.73 | 0.35 | 0.86 | 0.84 | 1.68 | 106442 | 13535 | 56 | 0 | 21 | 0 | 0 | logfile |