Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3JAU	6366	2023-04-22	2015-06-24	4.8	4.76	—	6.0	0.027	2.66	660.0	0.16	14.74	0.02	1.686	10.72	1.90	4.6	94.1	1.3	-2.16	0.21	0.38	—	5.4	0.003	0.70	0.0	0.04	13.62	0.00	2.034	12.63	0.00	4.6	95.0	0.4	-1.07	1.45	0.24	0.57	—	114900	14700	180	0	0	0	0	logfile
✔	8CXM	27060	2023-04-20	2022-05-21	3.21	3.69	3.21	3.6	0.003	0.50	0.0	0.03	14.84	0.00	2.093	8.38	0.06	4.1	95.9	0.0	3.68	0.56	0.87	1.34	3.5	0.003	0.53	0.0	0.03	16.26	0.00	2.108	6.36	0.15	3.9	96.1	0.0	4.62	1.14	0.58	0.89	1.41	109560	14685	55	0	0	0	0	logfile
✘	6JiU	9836	2023-04-21	2019-02-23	4.2	4.52	—	4.2	0.006	1.01	9.0	0.05	15.68	0.01	2.218	10.69	0.51	10.3	89.5	0.2	-5.44	0.78	0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	112212	14684	20	0	24	0	0	logfile
✔	7YCX	33741	2023-04-21	2022-07-02	4.18	4.23	4.26	4.0	0.004	0.63	1.0	0.04	14.07	0.00	1.722	11.71	0.18	5.5	94.3	0.2	0.51	0.85	0.76	—	4.0	0.003	0.64	0.0	0.04	14.37	0.00	1.812	12.31	0.02	4.7	95.2	0.1	0.81	0.47	0.87	0.80	—	113089	14682	42	104	69	0	0	logfile
✘	6JRS	9880	2023-04-21	2019-04-05	3.7	3.86	—	3.7	0.010	1.08	0.0	0.06	16.39	0.01	2.225	8.77	0.90	12.4	87.2	0.3	-5.87	0.74	0.80	1.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	112168	14652	20	0	24	0	0	logfile
✔	6QDV	4525	2023-04-24	2019-01-03	3.3	3.34	—	3.3	0.008	1.15	4.0	0.08	15.82	0.01	0.962	10.58	2.45	5.0	94.6	0.3	-3.15	0.53	0.72	2.12	3.3	0.003	0.66	0.0	0.04	16.97	0.00	1.913	14.47	0.47	4.6	95.4	0.1	0.41	1.45	0.51	0.66	1.86	121152	14611	60	348	18	0	0	logfile
✘	7W5B	32321	2023-04-19	2021-11-29	4.3	4.80	—	4.3	0.012	1.56	60.0	0.10	14.18	0.01	1.346	16.34	2.51	5.8	93.5	0.7	-3.06	0.65	0.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	106538	14610	62	416	19	0	0	logfile
✘	6JV2	9889	2023-04-21	2019-04-15	4.4	5.59	—	4.4	0.011	1.30	1.0	0.06	16.74	0.01	2.116	19.38	1.92	13.3	86.5	0.3	-4.61	0.83	0.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	111080	14564	16	0	24	0	0	logfile
✔	6RVW	4444	2023-04-21	2019-06-03	3.7	3.98	—	3.9	0.008	0.66	0.0	0.05	14.12	0.00	2.263	1.75	0.00	2.0	98.0	0.0	-2.37	0.79	0.82	2.87	4.0	0.007	0.74	0.0	0.05	18.10	0.00	2.058	12.50	1.53	2.3	97.7	0.0	-1.61	3.20	0.80	0.84	3.33	110208	14520	384	0	120	0	0	logfile
✔	6RVV	4443	2023-04-21	2019-06-03	3.7	3.95	—	3.9	0.006	0.60	0.0	0.05	13.27	0.00	2.245	2.48	0.00	2.0	98.0	0.0	-2.44	0.78	0.82	2.75	3.9	0.005	0.67	0.0	0.05	18.05	0.00	2.039	11.35	1.28	0.4	99.6	0.0	-0.79	1.07	0.79	0.83	2.94	110208	14520	384	0	120	0	0	logfile
✔	6U5K	20648	2023-04-21	2019-08-27	3.5	3.54	—	3.5	0.005	0.78	0.0	0.05	12.14	0.01	2.210	5.29	3.00	7.0	93.0	0.0	-5.23	0.53	0.83	2.34	3.5	0.007	0.77	0.0	0.05	15.02	0.00	2.020	10.79	0.42	8.2	91.8	0.0	-1.95	1.22	0.53	0.85	2.05	110106	14520	54	0	0	0	0	logfile
✔	7CF9	30343	2023-04-22	2020-06-24	4.7	4.24	5.21	4.0	0.006	1.24	0.0	0.06	16.01	0.01	1.538	5.47	1.67	6.2	93.7	0.1	-4.86	0.79	0.68	—	4.0	0.003	0.76	0.0	0.04	13.67	0.00	2.032	14.49	0.00	5.5	94.5	0.0	-2.02	1.79	0.81	0.74	—	116104	14416	12	0	1820	0	0	logfile
✔	6H6F	0150	2023-04-22	2018-07-27	3.72	2.83	—	3.6	0.020	1.68	1.0	0.09	10.88	0.01	2.182	1.08	0.00	1.7	98.1	0.2	0.96	0.83	0.77	1.63	3.5	0.003	0.64	0.0	0.04	15.30	0.00	2.091	11.57	0.19	2.5	97.5	0.0	1.42	0.90	0.84	0.77	1.43	114303	14388	6	0	0	0	0	logfile
✘	6JGZ	9824	2023-04-21	2019-02-16	4.6	4.96	—	4.6	0.007	1.13	0.0	0.06	11.54	0.01	2.171	11.98	0.73	11.3	88.3	0.4	-4.06	0.78	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	109824	14368	12	0	4	0	0	logfile
✘	6JHN	9826	2023-04-21	2019-02-18	4.5	7.49	—	4.4	0.010	1.23	0.0	0.06	16.52	0.01	2.114	19.26	1.44	13.9	85.8	0.3	-4.27	0.85	0.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	109488	14332	12	0	12	0	0	logfile
✘	6Ji0	9831	2023-04-21	2019-02-19	4.2	4.40	—	4.2	0.007	1.15	0.0	0.06	11.77	0.01	2.204	7.43	0.86	12.9	86.9	0.3	-4.44	0.73	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	109772	14332	12	0	16	0	0	logfile
✘	6JRR	9879	2023-04-20	2019-04-05	3.9	4.09	—	3.9	0.010	1.14	4.0	0.06	15.90	0.01	1.827	8.44	0.80	10.2	89.5	0.2	-5.20	0.76	0.81	1.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	109132	14268	12	0	16	0	0	logfile
✘	6JH6	9825	2023-04-20	2019-02-17	4.8	5.31	—	4.8	0.006	1.07	1.0	0.05	11.37	0.01	2.197	12.11	0.58	10.8	88.9	0.3	-4.03	0.79	0.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	108924	14244	12	0	8	0	0	logfile
✔	6U5F	20644	2023-04-19	2019-08-27	3.8	3.74	—	3.7	0.007	1.01	0.0	0.06	10.02	0.01	2.238	6.14	0.38	11.0	89.0	0.0	-5.43	0.61	0.81	3.06	3.7	0.004	0.74	0.0	0.05	15.10	0.00	1.968	12.19	0.69	9.5	90.5	0.0	-2.48	1.25	0.62	0.82	2.51	107550	14232	54	0	0	0	0	logfile
✔	6H6E	0149	2023-04-21	2018-07-27	3.95	3.43	—	3.8	0.021	1.74	1.0	0.10	10.97	0.01	1.834	1.64	0.01	1.9	97.9	0.3	0.48	0.79	0.80	1.58	3.7	0.004	0.75	0.0	0.04	16.20	0.00	2.005	16.29	0.50	3.2	96.7	0.1	0.97	1.89	0.79	0.82	1.48	112922	14231	6	0	0	0	0	logfile

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