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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5K12 | 8194 | 2022-12-13 | 2016-05-17 | 1.8 | 2.40 | — | 2.8 | 0.008 | 0.97 | 0.0 | 0.06 | 10.27 | 0.01 | 2.051 | 19.79 | 0.82 | 3.8 | 96.2 | 0.0 | -2.53 | 0.66 | 0.74 | 5.80 | 2.8 | 0.004 | 0.57 | 0.0 | 0.04 | 15.72 | 0.01 | 2.085 | 10.61 | 0.55 | 2.0 | 98.0 | 0.0 | 2.02 | 0.88 | 0.71 | 0.89 | 3.55 | 14856 | 1764 | 12 | 0 | 0 | 1086 | 0 | logfile |
✘ | 5XNL | 6741 | 2022-12-19 | 2017-05-23 | 2.7 | 2.75 | — | 2.8 | 0.013 | 1.60 | 0.0 | 0.09 | 15.86 | 0.02 | 1.207 | 10.25 | 0.08 | 2.1 | 97.9 | 0.0 | -3.12 | 0.55 | 0.78 | 3.96 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 98986 | 9364 | 136 | 0 | 490 | 1076 | 0 | logfile |
✔ | 7QSK | 14132 | 2022-12-14 | 2022-01-13 | 2.84 | 2.93 | 2.90 | 2.8 | 0.008 | 0.91 | 0.0 | 0.84 | 15.03 | 0.00 | 1.896 | 4.27 | 0.15 | 3.1 | 96.9 | 0.1 | 0.26 | 0.77 | 0.87 | 4.81 | 2.9 | 0.007 | 1.30 | 0.0 | 0.25 | 16.17 | 0.00 | 2.002 | 7.15 | 0.93 | 2.0 | 98.0 | 0.0 | 1.75 | 0.50 | 0.78 | 0.89 | 3.93 | 69986 | 8291 | 116 | 0 | 59 | 1060 | 0 | logfile |
✔ | 7QSL | 14133 | 2022-12-14 | 2022-01-13 | 2.76 | 2.80 | 2.81 | 2.7 | 0.010 | 0.96 | 0.0 | 0.84 | 14.06 | 0.00 | 1.710 | 4.91 | 0.06 | 3.1 | 96.8 | 0.0 | -0.57 | 0.78 | 0.89 | 5.14 | 2.7 | 0.007 | 1.30 | 0.0 | 0.25 | 15.74 | 0.00 | 1.521 | 6.90 | 0.91 | 2.0 | 97.9 | 0.0 | 1.52 | 0.87 | 0.78 | 0.90 | 4.16 | 69733 | 8287 | 109 | 0 | 56 | 1024 | 0 | logfile |
✘ | 7A5V | 11657 | 2022-12-18 | 2020-08-22 | 1.7 | 1.73 | 1.69 | 1.8 | 0.014 | 1.59 | 0.0 | 0.09 | 13.54 | 0.02 | 0.000 | 2.47 | 0.48 | 2.2 | 97.8 | 0.0 | -0.05 | 0.61 | 0.79 | 6.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 21155 | 2275 | 30 | 0 | 85 | 1015 | 0 | logfile |
✔ | 7P64 | 13217 | 2022-12-20 | 2021-07-15 | 2.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38981 | 4732 | 37 | 0 | 36 | 987 | 0 | logfile |
✔ | 6ZGL | 11210 | 2022-12-13 | 2020-06-19 | 1.9 | 1.87 | — | 1.9 | 0.013 | 1.55 | 0.0 | 0.12 | 15.52 | 0.01 | 2.196 | 9.41 | 3.73 | 1.1 | 98.9 | 0.0 | 0.13 | 0.73 | 0.83 | 7.03 | 1.9 | 0.003 | 0.56 | 0.0 | 0.04 | 15.75 | 0.00 | 2.118 | 4.99 | 1.00 | 0.6 | 99.4 | 0.0 | 3.59 | 0.75 | 0.75 | 0.83 | 7.07 | 15760 | 1848 | 24 | 0 | 0 | 964 | 0 | logfile |
✔ | 6TSK | 10564 | 2022-12-18 | 2019-12-20 | 2.3 | 2.36 | — | 2.3 | 0.012 | 1.54 | 24.0 | 0.11 | 16.57 | 0.02 | 1.535 | 1.76 | 2.42 | 2.9 | 97.0 | 0.1 | -1.00 | 0.84 | 0.94 | 7.33 | 2.3 | 0.003 | 0.64 | 0.0 | 0.05 | 17.00 | 0.00 | 1.961 | 3.26 | 1.44 | 2.5 | 97.5 | 0.0 | 0.45 | 0.82 | 0.80 | 0.91 | 6.48 | 33632 | 4060 | 12 | 0 | 8 | 964 | 0 | logfile |
✔ | 7DD9 | 30650 | 2022-12-19 | 2020-10-28 | 2.4 | 2.49 | 2.37 | 2.4 | 0.007 | 0.71 | 0.0 | 0.05 | 15.88 | 0.00 | 1.932 | 8.82 | 1.93 | 7.1 | 92.9 | 0.0 | -1.19 | 0.79 | 0.87 | 4.70 | 2.4 | 0.005 | 0.66 | 0.0 | 0.05 | 16.21 | 0.00 | 1.931 | 9.45 | 1.93 | 6.1 | 93.9 | 0.0 | -0.99 | 0.22 | 0.79 | 0.88 | 4.78 | 37149 | 4516 | 12 | 0 | 12 | 949 | 0 | logfile |
✔ | 7P7C | 13235 | 2022-12-20 | 2021-07-19 | 2.4 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 38320 | 4717 | 36 | 0 | 25 | 948 | 0 | logfile |
✔ | 6Z0V | 11024 | 2022-12-21 | 2020-05-11 | 2.6 | 2.68 | — | 2.6 | 0.010 | 0.87 | 0.0 | 0.06 | 13.09 | 0.01 | 1.818 | 10.05 | 0.27 | 5.3 | 94.7 | 0.0 | -2.69 | 0.73 | 0.87 | 5.10 | 2.7 | 0.004 | 0.65 | 0.0 | 0.05 | 14.80 | 0.00 | 1.929 | 7.72 | 0.40 | 3.0 | 97.0 | 0.0 | -0.09 | 1.23 | 0.75 | 0.86 | 4.44 | 42972 | 5424 | 36 | 0 | 12 | 936 | 0 | logfile |
✔ | 7oJ5 | 12938 | 2022-12-19 | 2021-05-13 | 2.4 | 2.43 | — | 2.4 | 0.002 | 0.53 | 0.0 | 0.04 | 16.61 | 0.00 | 2.177 | 1.81 | 1.95 | 1.6 | 98.4 | 0.0 | -0.94 | 0.76 | 0.87 | 3.97 | 2.4 | 0.004 | 0.83 | 0.0 | 0.05 | 16.82 | 0.00 | 2.124 | 3.47 | 1.30 | 2.7 | 97.3 | 0.0 | 0.60 | 0.34 | 0.78 | 0.89 | 4.75 | 35323 | 4416 | 72 | 0 | 48 | 931 | 0 | logfile |
✘ | 6YBQ | 10771 | 2022-12-18 | 2020-03-17 | 1.96 | 2.06 | — | 2.0 | 0.005 | 0.73 | 0.0 | 0.05 | 13.34 | 0.01 | 1.192 | 2.27 | 0.00 | 2.7 | 97.3 | 0.0 | -1.94 | 0.82 | 0.87 | 6.46 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 34092 | 4289 | 36 | 0 | 12 | 871 | 0 | logfile |
✔ | 8DQX | 27663 | 2022-12-21 | 2022-07-20 | 2.1 | 2.94 | 2.16 | 2.7 | 0.008 | 0.68 | 0.0 | 0.04 | 17.17 | 0.00 | 1.878 | 5.03 | 1.26 | 2.0 | 98.0 | 0.0 | 1.11 | 0.79 | 0.75 | 4.56 | 2.7 | 0.004 | 0.54 | 0.0 | 0.04 | 16.98 | 0.00 | 1.713 | 4.30 | 1.04 | 1.3 | 98.7 | 0.0 | 1.86 | 0.65 | 0.80 | 0.89 | 4.52 | 43173 | 2598 | 26 | 27 | 8 | 866 | 21143 | logfile |
✔ | 7P7E | 13236 | 2022-12-19 | 2021-07-19 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 37326 | 4612 | 36 | 0 | 23 | 837 | 0 | logfile |
✔ | 7XMU | 33305 | 2022-12-13 | 2022-04-26 | 2.3 | 2.51 | 2.33 | 2.5 | 0.016 | 0.97 | 0.0 | 0.05 | 17.31 | 0.04 | 1.897 | 4.43 | 1.57 | 2.6 | 97.4 | 0.0 | -0.10 | 0.75 | 0.87 | 4.86 | 2.5 | 0.003 | 1.42 | 0.0 | 0.05 | 16.62 | 0.00 | 1.888 | 4.38 | 0.85 | 2.9 | 97.1 | 0.0 | 0.06 | 1.10 | 0.77 | 0.89 | 4.70 | 15294 | 1842 | 18 | 0 | 36 | 822 | 0 | logfile |
✔ | 7XMV | 33306 | 2022-12-13 | 2022-04-27 | 2.6 | 2.75 | 2.70 | 2.8 | 0.014 | 0.93 | 0.0 | 0.05 | 15.94 | 0.03 | 1.853 | 5.56 | 1.18 | 3.6 | 96.4 | 0.0 | -0.87 | 0.72 | 0.86 | 4.88 | 2.8 | 0.002 | 1.21 | 0.0 | 0.04 | 17.10 | 0.00 | 1.921 | 5.36 | 0.78 | 3.1 | 96.9 | 0.0 | 0.08 | 1.12 | 0.73 | 0.87 | 4.43 | 15228 | 1842 | 18 | 0 | 30 | 810 | 0 | logfile |
✘ | 7M4V | 23667 | 2022-12-19 | 2021-03-22 | 2.54 | 2.36 | — | 2.4 | 0.002 | 0.51 | 0.0 | 0.03 | 14.92 | 0.00 | 1.183 | 2.96 | 0.00 | 2.3 | 97.6 | 0.2 | 0.82 | 0.71 | 0.79 | 4.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 86404 | 3128 | 48 | 2847 | 162 | 802 | 0 | logfile |
✔ | 7ARD | 11880 | 2022-12-14 | 2020-10-23 | 3.11 | 3.05 | — | 3.0 | 0.005 | 0.90 | 0.0 | 0.05 | 14.05 | 0.01 | 1.852 | 13.15 | 0.04 | 2.1 | 97.9 | 0.0 | 0.94 | 0.78 | 0.86 | 3.25 | 3.0 | 0.002 | 0.51 | 0.0 | 0.04 | 15.82 | 0.00 | 2.072 | 8.27 | 0.22 | 2.3 | 97.7 | 0.0 | 1.34 | 0.98 | 0.78 | 0.89 | 2.91 | 70559 | 8515 | 116 | 0 | 264 | 782 | 0 | logfile |
✘ | 7EFD | 31084 | 2022-12-18 | 2021-03-21 | 1.77 | 1.79 | 1.83 | 1.9 | 0.033 | 3.16 | 60.0 | 0.09 | 15.47 | 0.02 | 0.000 | 2.38 | 2.15 | 1.7 | 97.5 | 0.8 | -0.54 | 0.71 | 0.78 | 5.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 20020 | 2400 | 20 | 0 | 20 | 780 | 0 | logfile |