Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5K12	8194	2022-12-13	2016-05-17	1.8	2.40	—	2.8	0.008	0.97	0.0	0.06	10.27	0.01	2.051	19.79	0.82	3.8	96.2	0.0	-2.53	0.66	0.74	5.80	2.8	0.004	0.57	0.0	0.04	15.72	0.01	2.085	10.61	0.55	2.0	98.0	0.0	2.02	0.88	0.71	0.89	3.55	14856	1764	12	0	0	1086	0	logfile
✘	5XNL	6741	2022-12-19	2017-05-23	2.7	2.75	—	2.8	0.013	1.60	0.0	0.09	15.86	0.02	1.207	10.25	0.08	2.1	97.9	0.0	-3.12	0.55	0.78	3.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	98986	9364	136	0	490	1076	0	logfile
✔	7QSK	14132	2022-12-14	2022-01-13	2.84	2.93	2.90	2.8	0.008	0.91	0.0	0.84	15.03	0.00	1.896	4.27	0.15	3.1	96.9	0.1	0.26	0.77	0.87	4.81	2.9	0.007	1.30	0.0	0.25	16.17	0.00	2.002	7.15	0.93	2.0	98.0	0.0	1.75	0.50	0.78	0.89	3.93	69986	8291	116	0	59	1060	0	logfile
✔	7QSL	14133	2022-12-14	2022-01-13	2.76	2.80	2.81	2.7	0.010	0.96	0.0	0.84	14.06	0.00	1.710	4.91	0.06	3.1	96.8	0.0	-0.57	0.78	0.89	5.14	2.7	0.007	1.30	0.0	0.25	15.74	0.00	1.521	6.90	0.91	2.0	97.9	0.0	1.52	0.87	0.78	0.90	4.16	69733	8287	109	0	56	1024	0	logfile
✘	7A5V	11657	2022-12-18	2020-08-22	1.7	1.73	1.69	1.8	0.014	1.59	0.0	0.09	13.54	0.02	0.000	2.47	0.48	2.2	97.8	0.0	-0.05	0.61	0.79	6.90	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21155	2275	30	0	85	1015	0	logfile
✔	7P64	13217	2022-12-20	2021-07-15	2.5	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	38981	4732	37	0	36	987	0	logfile
✔	6ZGL	11210	2022-12-13	2020-06-19	1.9	1.87	—	1.9	0.013	1.55	0.0	0.12	15.52	0.01	2.196	9.41	3.73	1.1	98.9	0.0	0.13	0.73	0.83	7.03	1.9	0.003	0.56	0.0	0.04	15.75	0.00	2.118	4.99	1.00	0.6	99.4	0.0	3.59	0.75	0.75	0.83	7.07	15760	1848	24	0	0	964	0	logfile
✔	6TSK	10564	2022-12-18	2019-12-20	2.3	2.36	—	2.3	0.012	1.54	24.0	0.11	16.57	0.02	1.535	1.76	2.42	2.9	97.0	0.1	-1.00	0.84	0.94	7.33	2.3	0.003	0.64	0.0	0.05	17.00	0.00	1.961	3.26	1.44	2.5	97.5	0.0	0.45	0.82	0.80	0.91	6.48	33632	4060	12	0	8	964	0	logfile
✔	7DD9	30650	2022-12-19	2020-10-28	2.4	2.49	2.37	2.4	0.007	0.71	0.0	0.05	15.88	0.00	1.932	8.82	1.93	7.1	92.9	0.0	-1.19	0.79	0.87	4.70	2.4	0.005	0.66	0.0	0.05	16.21	0.00	1.931	9.45	1.93	6.1	93.9	0.0	-0.99	0.22	0.79	0.88	4.78	37149	4516	12	0	12	949	0	logfile
✔	7P7C	13235	2022-12-20	2021-07-19	2.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	38320	4717	36	0	25	948	0	logfile
✔	6Z0V	11024	2022-12-21	2020-05-11	2.6	2.68	—	2.6	0.010	0.87	0.0	0.06	13.09	0.01	1.818	10.05	0.27	5.3	94.7	0.0	-2.69	0.73	0.87	5.10	2.7	0.004	0.65	0.0	0.05	14.80	0.00	1.929	7.72	0.40	3.0	97.0	0.0	-0.09	1.23	0.75	0.86	4.44	42972	5424	36	0	12	936	0	logfile
✔	7oJ5	12938	2022-12-19	2021-05-13	2.4	2.43	—	2.4	0.002	0.53	0.0	0.04	16.61	0.00	2.177	1.81	1.95	1.6	98.4	0.0	-0.94	0.76	0.87	3.97	2.4	0.004	0.83	0.0	0.05	16.82	0.00	2.124	3.47	1.30	2.7	97.3	0.0	0.60	0.34	0.78	0.89	4.75	35323	4416	72	0	48	931	0	logfile
✘	6YBQ	10771	2022-12-18	2020-03-17	1.96	2.06	—	2.0	0.005	0.73	0.0	0.05	13.34	0.01	1.192	2.27	0.00	2.7	97.3	0.0	-1.94	0.82	0.87	6.46	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	34092	4289	36	0	12	871	0	logfile
✔	8DQX	27663	2022-12-21	2022-07-20	2.1	2.94	2.16	2.7	0.008	0.68	0.0	0.04	17.17	0.00	1.878	5.03	1.26	2.0	98.0	0.0	1.11	0.79	0.75	4.56	2.7	0.004	0.54	0.0	0.04	16.98	0.00	1.713	4.30	1.04	1.3	98.7	0.0	1.86	0.65	0.80	0.89	4.52	43173	2598	26	27	8	866	21143	logfile
✔	7P7E	13236	2022-12-19	2021-07-19	2.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	37326	4612	36	0	23	837	0	logfile
✔	7XMU	33305	2022-12-13	2022-04-26	2.3	2.51	2.33	2.5	0.016	0.97	0.0	0.05	17.31	0.04	1.897	4.43	1.57	2.6	97.4	0.0	-0.10	0.75	0.87	4.86	2.5	0.003	1.42	0.0	0.05	16.62	0.00	1.888	4.38	0.85	2.9	97.1	0.0	0.06	1.10	0.77	0.89	4.70	15294	1842	18	0	36	822	0	logfile
✔	7XMV	33306	2022-12-13	2022-04-27	2.6	2.75	2.70	2.8	0.014	0.93	0.0	0.05	15.94	0.03	1.853	5.56	1.18	3.6	96.4	0.0	-0.87	0.72	0.86	4.88	2.8	0.002	1.21	0.0	0.04	17.10	0.00	1.921	5.36	0.78	3.1	96.9	0.0	0.08	1.12	0.73	0.87	4.43	15228	1842	18	0	30	810	0	logfile
✘	7M4V	23667	2022-12-19	2021-03-22	2.54	2.36	—	2.4	0.002	0.51	0.0	0.03	14.92	0.00	1.183	2.96	0.00	2.3	97.6	0.2	0.82	0.71	0.79	4.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	86404	3128	48	2847	162	802	0	logfile
✔	7ARD	11880	2022-12-14	2020-10-23	3.11	3.05	—	3.0	0.005	0.90	0.0	0.05	14.05	0.01	1.852	13.15	0.04	2.1	97.9	0.0	0.94	0.78	0.86	3.25	3.0	0.002	0.51	0.0	0.04	15.82	0.00	2.072	8.27	0.22	2.3	97.7	0.0	1.34	0.98	0.78	0.89	2.91	70559	8515	116	0	264	782	0	logfile
✘	7EFD	31084	2022-12-18	2021-03-21	1.77	1.79	1.83	1.9	0.033	3.16	60.0	0.09	15.47	0.02	0.000	2.38	2.15	1.7	97.5	0.8	-0.54	0.71	0.78	5.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20020	2400	20	0	20	780	0	logfile

• ← previous
• Page 4 of 443
• next →