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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 5NUG | 3698 | 2024-03-25 | 2017-04-30 | 3.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -0.41 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 46232 | 5840 | 4 | 0 | 10 | 0 | 0 | logfile |
✘ | 6G53 | 4351 | 2024-03-25 | 2018-03-28 | 4.5 | 4.86 | — | 4.3 | 0.007 | 1.44 | 21.0 | 0.10 | 23.24 | 0.00 | 1.260 | 2.52 | 0.00 | 7.1 | 92.2 | 0.7 | -2.88 | 0.67 | 0.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 49052 | 5912 | 37 | 1659 | 0 | 0 | 0 | logfile |
✘ | 5YKG | 6833 | 2024-03-25 | 2017-10-14 | 4.57 | 4.68 | 4.39 | 4.4 | 0.005 | 0.71 | 4.0 | 0.04 | 13.81 | 0.01 | 2.245 | 13.33 | 7.90 | 4.2 | 95.6 | 0.1 | -2.42 | 0.73 | 0.73 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 50868 | 6536 | 16 | 0 | 12 | 0 | 0 | logfile |
✘ | 6KXS | 0782 | 2024-03-19 | 2019-09-12 | 3.4 | 3.50 | — | 3.4 | 0.018 | 1.44 | 0.0 | 0.09 | 15.96 | 0.01 | 2.157 | 9.00 | 3.30 | 15.2 | 84.4 | 0.4 | -4.73 | 0.70 | 0.72 | 2.54 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 22499 | 2869 | 23 | 0 | 12 | 0 | 0 | logfile |
✘ | 5XNo | 6744 | 2024-03-14 | 2017-05-23 | 3.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10020 | 854 | 8 | 0 | 72 | 0 | 0 | logfile |
✘ | 8A94 | 15269 | 2024-03-21 | 2022-06-27 | 2.4 | 2.82 | 2.71 | 2.7 | 0.007 | 1.10 | 1.0 | 0.07 | 14.51 | 0.01 | 2.046 | 6.57 | 0.66 | 5.3 | 94.7 | 0.1 | -0.60 | 0.67 | 0.57 | 0.90 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 30862 | 3864 | 19 | 0 | 57 | 0 | 0 | logfile |
✘ | 6RX4 | 10049 | 2024-03-11 | 2019-06-07 | 3.3 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7347 | 884 | 8 | 0 | 31 | 7 | 0 | logfile |
✘ | 6ZDG | 11173 | 2024-03-20 | 2020-06-14 | 4.7 | 4.97 | — | 4.8 | 0.004 | 0.50 | 0.0 | 0.04 | 9.08 | 0.00 | 1.891 | 7.24 | 2.41 | 3.9 | 96.1 | 0.0 | 0.05 | 0.71 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 28548 | 1884 | 12 | 0 | 3 | 0 | 13995 | logfile |
✘ | 7NWL | 12634 | 2024-03-16 | 2021-03-17 | 3.1 | 3.95 | 3.38 | 3.5 | 0.013 | 1.48 | 0.0 | 0.11 | 14.02 | 0.02 | 1.790 | 40.24 | 0.93 | 1.9 | 98.0 | 0.1 | 0.97 | 0.80 | 0.66 | 0.68 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13904 | 1747 | 17 | 0 | 40 | 0 | 0 | logfile |
✘ | 6RKV | 4912 | 2024-03-16 | 2019-04-30 | 4.6 | 4.86 | — | 4.5 | 0.002 | 0.53 | 0.0 | 0.04 | 13.18 | 0.00 | 2.207 | 7.23 | 0.00 | 5.3 | 94.7 | 0.0 | -1.73 | 0.87 | 0.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15460 | 1784 | 8 | 64 | 0 | 0 | 0 | logfile |
✘ | 7P5Y | 13208 | 2024-03-24 | 2021-07-15 | 3.29 | 2.97 | 3.19 | 3.1 | 0.002 | 0.49 | 0.0 | 0.04 | 11.33 | 0.00 | 2.158 | 10.43 | 2.64 | 3.5 | 96.5 | 0.0 | -0.32 | 0.72 | 0.72 | 1.77 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 41106 | 5028 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 8HTU | 35018 | 2024-03-11 | 2022-12-21 | 2.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 57715 | 5089 | 51 | 0 | 366 | 2 | 0 | logfile |
✘ | 8DBi | 27285 | 2024-03-16 | 2022-06-14 | 2.0 | 2.07 | 2.03 | 2.0 | 0.012 | 1.17 | 0.0 | 0.06 | 18.16 | 0.04 | 1.910 | 5.92 | 1.15 | 4.3 | 95.7 | 0.0 | 0.57 | 0.73 | 0.87 | 6.48 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14496 | 1854 | 18 | 0 | 30 | 12 | 0 | logfile |
✘ | 6TM5 | 10518 | 2024-03-12 | 2019-12-03 | 3.9 | 4.07 | — | 4.1 | 0.010 | 1.11 | 0.0 | 0.05 | 15.92 | 0.01 | 1.619 | 28.83 | 0.76 | 11.9 | 87.8 | 0.3 | -4.46 | 0.36 | 0.48 | 0.44 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 63885 | 8117 | 23 | 0 | 3 | 0 | 0 | logfile |
✘ | 7YZK | 14389 | 2024-03-16 | 2022-02-20 | 3.57 | 2.84 | 3.44 | 3.9 | 0.004 | 0.68 | 0.0 | 0.04 | 13.49 | 0.01 | 1.698 | 8.76 | 0.77 | 1.2 | 98.2 | 0.6 | 0.96 | 0.62 | 0.69 | 0.74 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15144 | 990 | 6 | 0 | 6 | 0 | 7522 | logfile |
✘ | 7JN4 | 22401 | 2024-03-23 | 2020-08-03 | 2.68 | 2.77 | — | 2.7 | 0.013 | 1.22 | 8.0 | 0.08 | 10.93 | 0.01 | 2.229 | 5.48 | 1.33 | 2.9 | 97.1 | 0.0 | -3.84 | 0.78 | 0.85 | 5.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 35712 | 4520 | 32 | 0 | 0 | 232 | 0 | logfile |
✘ | 7CoY | 30420 | 2024-03-11 | 2020-08-05 | 2.5 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 57966 | 6096 | 66 | 0 | 279 | 84 | 0 | logfile |
✘ | 6SGA | 10177 | 2024-03-18 | 2019-08-03 | 3.1 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 137038 | 15423 | 77 | 463 | 790 | 0 | 0 | logfile |
✘ | 6KMX | 0727 | 2024-03-12 | 2019-08-01 | 2.41 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65112 | 5919 | 72 | 0 | 363 | 636 | 0 | logfile |
✘ | 6KMW | 0726 | 2024-03-12 | 2019-08-01 | 2.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64083 | 5739 | 63 | 0 | 366 | 627 | 0 | logfile |