Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7AQD	11864	2022-12-19	2020-10-21	3.1	3.48	—	3.2	0.005	1.09	11.0	0.05	16.55	0.01	0.152	6.46	1.12	5.2	94.5	0.3	-2.11	0.78	0.72	1.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	94357	3543	32	3106	0	0	0	logfile
✘	6URT	20862	2022-12-18	2019-10-24	3.27	4.11	—	3.7	0.008	1.36	1.0	0.06	17.78	0.01	2.285	7.74	3.41	9.0	91.0	0.0	-4.88	0.73	0.83	2.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18263	2317	14	0	7	0	0	logfile
✘	7CQK	30442	2022-12-18	2020-08-11	3.3	3.38	—	3.3	0.010	1.35	3.0	0.08	19.24	0.01	0.963	30.09	21.66	11.3	87.7	1.0	-5.35	0.70	0.84	2.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8859	1116	7	0	2	0	0	logfile
✘	7LL2	23412	2022-12-19	2021-02-03	3.73	4.36	3.97	3.8	0.013	1.77	3.0	0.10	13.21	0.02	2.531	0.77	0.63	5.9	93.7	0.4	-0.81	0.82	0.76	2.65	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25512	3060	48	0	132	0	0	logfile
✘	7R88	24311	2022-12-18	2021-06-26	3.5	3.76	—	3.7	0.002	0.45	0.0	0.04	12.49	0.00	2.274	5.35	1.02	3.5	96.5	0.0	-1.50	0.69	0.85	2.38	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10787	1368	4	0	0	0	0	logfile
✘	7CZY	30521	2022-12-18	2020-09-09	3.3	3.38	—	3.3	0.011	1.00	0.0	0.07	17.68	0.01	1.865	25.81	12.01	10.3	87.0	2.6	-3.80	0.62	0.70	1.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	31186	3880	33	0	76	0	0	logfile
✘	7D0J	30536	2022-12-19	2020-09-10	3.42	3.77	—	3.7	0.011	1.27	0.0	0.09	18.65	0.01	1.058	17.22	0.04	9.4	90.3	0.3	-2.31	0.77	0.79	2.46	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	68860	5923	56	0	453	0	0	logfile
✘	6VVY	21407	2022-12-18	2020-02-18	3.42	4.20	—	3.8	0.007	0.87	1.0	0.05	19.81	0.01	1.180	6.21	4.85	7.6	92.3	0.1	-3.95	0.90	0.87	1.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	30033	3516	12	130	4	0	0	logfile
✘	6VVX	21406	2022-12-18	2020-02-18	3.39	4.23	—	3.8	0.007	0.84	0.0	0.05	18.93	0.01	1.182	5.43	3.99	6.2	93.8	0.0	-3.74	0.90	0.87	1.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29858	3508	12	128	4	0	0	logfile
✘	7KC2	22805	2022-12-18	2020-10-04	2.67	3.44	—	3.4	0.008	0.70	0.0	0.05	13.47	0.00	2.216	9.56	0.00	5.2	94.8	0.0	-2.73	0.76	0.82	3.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10192	1388	12	0	12	4	0	logfile
✘	7AoD	11841	2022-12-19	2020-10-14	4.5	4.61	—	4.5	0.007	0.89	0.0	0.05	14.84	0.01	1.858	27.44	1.95	10.7	88.9	0.3	-4.20	0.79	0.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	59256	7466	34	0	12	0	0	logfile
✘	6T7S	10371	2022-12-18	2019-10-23	4.5	4.67	—	4.5	0.004	0.93	0.0	0.06	14.16	0.01	2.278	7.26	0.28	6.0	94.0	0.0	-4.74	0.65	0.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23436	3090	3	0	0	0	0	logfile
✘	7CRB	30449	2022-12-18	2020-08-13	3.16	3.51	—	3.4	0.005	0.81	2.0	0.05	13.84	0.00	2.288	8.72	0.77	8.8	91.2	0.0	-2.29	0.75	0.82	3.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6806	851	2	0	0	0	0	logfile
✔	7ETo	31301	2022-12-19	2021-05-13	4.0	3.89	—	4.0	0.007	0.94	0.0	0.06	14.66	0.01	2.228	7.32	0.70	6.6	93.4	0.0	-4.12	0.40	0.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	98674	12386	26	0	0	0	0	logfile
✘	6PLR	20373	2022-12-18	2019-07-01	3.2	3.44	—	3.4	0.007	0.93	0.0	0.05	8.76	0.01	1.522	4.62	0.00	3.8	96.2	0.0	-4.64	0.64	0.81	4.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14685	1735	15	0	75	0	0	logfile
✘	7RYP	24744	2022-12-18	2021-08-25	4.8	5.38	4.84	6.5	0.015	1.50	0.0	0.07	10.94	0.01	2.098	5.34	0.00	6.2	92.1	1.7	-1.44	0.78	0.73	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11293	725	2	0	0	0	5599	logfile
✘	7JMN	22397	2022-12-18	2020-08-02	3.58	3.99	—	3.8	0.004	0.83	0.0	0.05	14.64	0.01	2.115	11.11	0.07	19.3	80.2	0.6	-5.81	0.79	0.78	1.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13633	1756	5	0	52	0	0	logfile
✘	6YEZ	10798	2022-12-20	2020-03-25	2.7	3.21	2.66	3.1	0.025	2.78	6.0	0.13	20.66	0.01	1.193	31.18	0.61	5.2	94.5	0.4	-1.96	0.77	0.87	2.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	39217	3438	35	0	244	2	0	logfile
✘	7MJK	23876	2022-12-19	2021-04-20	2.73	3.61	—	2.9	0.004	0.77	0.0	0.05	12.93	0.01	2.307	3.00	0.00	3.0	97.0	0.0	-0.85	0.86	0.82	2.65	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	34878	4389	30	0	60	0	0	logfile
✘	7E0H	30932	2022-12-18	2021-01-28	3.75	3.80	—	3.7	0.007	1.54	0.0	0.08	17.97	0.02	1.210	11.26	0.00	9.0	91.0	0.0	-3.64	0.68	0.76	1.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8017	661	6	0	57	0	0	logfile

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