Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7JMi	22395	2022-07-04	2020-07-31	4.5	6.62	—	4.3	0.004	0.92	0.0	0.05	10.07	0.01	1.373	7.58	0.31	10.5	89.3	0.2	-4.79	0.58	0.34	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	120756	13500	12	0	3608	0	0	logfile
✘	7JMG	22393	2022-07-04	2020-07-31	4.5	7.15	—	4.3	0.005	0.93	0.0	0.05	9.82	0.01	1.373	7.47	0.27	10.3	89.6	0.1	-4.77	0.57	0.34	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	120756	13500	12	0	3608	0	0	logfile
✘	7CF9	30343	2022-07-04	2020-06-24	4.7	4.24	5.21	4.0	0.005	1.23	0.0	0.06	16.01	0.01	1.230	5.56	1.67	6.2	93.7	0.1	-4.86	0.79	0.68	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	116104	14416	12	0	1820	0	0	logfile
✘	7JM7	22389	2022-07-06	2020-07-31	2.82	3.04	—	3.0	0.004	0.76	0.0	0.12	12.76	0.01	1.180	5.59	1.17	2.1	97.9	0.0	1.63	0.53	0.76	2.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	28596	1802	16	0	38	36	14054	logfile
✘	6SL5	10236	2022-07-08	2019-08-18	2.84	2.97	2.83	3.0	0.026	2.95	9.0	0.13	20.95	0.02	1.187	20.83	0.73	7.3	92.0	0.7	-3.12	0.71	0.77	2.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	43789	3744	36	0	292	0	0	logfile
✘	6VXK	21442	2022-07-04	2020-02-22	3.1	3.57	—	3.2	0.011	0.83	0.0	0.05	14.64	0.00	2.122	15.48	8.05	10.5	89.5	0.0	-3.69	0.86	0.88	3.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17418	2254	8	0	18	0	0	logfile
✘	6WRG	21883	2022-07-06	2020-04-29	3.58	3.96	—	3.9	0.009	0.96	0.0	0.05	17.28	0.01	1.173	50.61	0.24	9.1	90.1	0.8	-3.02	0.80	0.84	1.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32527	3850	12	102	8	0	0	logfile
✘	6VL6	21231	2022-07-05	2020-01-22	4.6	5.00	4.54	4.6	0.019	1.46	0.0	0.09	11.38	0.01	2.431	0.59	0.00	0.9	99.1	0.0	0.45	0.87	0.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21504	2640	24	0	0	0	0	logfile
✘	6VKS	21228	2022-07-05	2020-01-22	3.02	3.41	—	3.4	0.006	0.89	0.0	0.05	15.02	0.01	1.184	8.75	0.00	3.2	96.8	0.0	-3.88	0.74	0.79	2.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24034	3131	6	0	18	0	0	logfile
✘	7KJW	22900	2022-07-03	2020-10-26	2.9	3.11	—	3.1	0.002	0.44	0.0	0.04	13.69	0.00	1.174	4.76	0.87	2.6	97.3	0.1	0.64	0.76	0.83	4.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8561	949	5	44	2	0	0	logfile
✘	7BVF	30218	2022-07-04	2020-04-10	2.97	3.41	3.02	3.3	0.007	0.93	6.0	0.06	13.41	0.01	1.285	6.43	0.12	12.7	87.1	0.2	-4.65	0.75	0.88	3.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16933	2221	5	0	5	0	0	logfile
✘	6WR8	21880	2022-07-06	2020-04-29	3.53	3.69	—	3.5	0.009	0.89	0.0	0.05	20.31	0.01	1.175	56.50	7.88	8.0	91.4	0.6	-2.77	0.81	0.85	1.94	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	31608	3688	10	124	5	0	0	logfile
✘	6YAM	10761	2022-07-04	2020-03-12	3.6	3.47	—	3.5	0.021	2.06	55.0	0.11	15.03	0.02	0.634	17.61	3.01	10.8	85.2	4.0	-4.49	0.39	0.52	0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	118536	9811	51	1863	5	0	0	logfile
✘	6WR6	21879	2022-07-06	2020-04-29	4.14	4.27	—	4.1	0.009	1.03	0.0	0.05	18.01	0.01	1.175	61.32	0.27	9.4	89.9	0.7	-3.01	0.81	0.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	33509	3830	12	162	6	0	0	logfile
✘	6PCT	20307	2022-07-04	2019-06-18	2.8	3.01	—	2.9	0.003	0.37	2.0	0.03	12.58	0.00	1.213	2.99	2.50	6.3	93.6	0.1	-3.70	0.66	0.85	4.28	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72198	964	8	3015	1	0	0	logfile
✘	6YXR	10995	2022-07-03	2020-05-03	3.4	3.53	3.43	3.5	0.019	2.23	2.0	0.13	19.52	0.02	1.197	27.04	0.44	4.1	95.7	0.3	-3.53	0.67	0.76	2.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	31910	2783	20	0	194	0	0	logfile
✘	7JMF	22392	2022-07-04	2020-07-31	4.5	5.06	—	4.7	0.005	0.98	0.0	0.05	10.23	0.01	1.373	8.17	0.36	11.2	88.6	0.2	-4.91	0.54	0.27	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	120756	13500	12	0	3608	0	0	logfile
✘	6WRD	21881	2022-07-06	2020-04-29	3.62	3.97	—	3.9	0.005	0.73	0.0	0.04	16.20	0.01	1.176	47.19	0.15	9.2	89.8	1.0	-3.06	0.78	0.84	1.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32349	3936	12	66	8	0	0	logfile
✘	6Z5R	11080	2022-07-05	2020-05-27	2.8	3.01	—	2.8	0.019	1.71	0.0	0.19	20.08	0.02	1.392	10.78	0.00	3.6	96.4	0.0	0.18	0.89	0.88	3.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25048	2336	72	0	105	3	0	logfile
✘	7E7B	30998	2022-07-05	2021-02-25	2.6	2.79	—	2.7	0.010	0.88	3.0	0.06	14.35	0.02	1.188	5.06	5.49	3.6	96.4	0.0	-2.02	0.83	0.87	4.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	27363	3306	48	0	99	36	0	logfile

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