Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6VFi	21173	2022-12-19	2020-01-05	4.54	4.63	4.54	4.5	0.018	1.47	0.0	0.09	10.93	0.01	2.449	0.53	0.00	1.3	98.7	0.0	1.21	0.74	0.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	60925	7875	50	0	0	0	0	logfile
✔	6W1Z	21519	2022-12-22	2020-03-04	2.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	48536	6156	27	0	36	0	0	logfile
✘	6UD3	20731	2022-12-18	2019-09-18	3.5	4.06	3.46	3.8	0.018	1.60	0.0	0.11	11.84	0.01	2.293	7.52	0.00	4.6	95.4	0.0	-1.90	0.79	0.78	1.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14346	1765	10	0	6	0	0	logfile
✘	6YMX	10847	2022-12-22	2020-04-10	3.17	3.73	3.27	3.6	0.010	1.11	0.0	0.06	15.99	0.01	1.201	7.02	0.39	6.1	93.9	0.1	-5.84	0.76	0.85	2.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	47034	5759	47	0	38	0	0	logfile
✘	7AQC	11862	2022-12-19	2020-10-21	2.99	2.20	—	2.5	0.004	0.83	0.0	0.05	16.62	0.01	1.862	5.15	0.13	5.4	94.6	0.0	-1.91	0.83	0.80	2.39	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	95378	3752	34	3077	0	0	0	logfile
✘	6ZP7	11337	2022-12-18	2020-07-08	3.3	4.01	3.43	3.7	0.012	0.83	0.0	0.16	13.52	0.01	0.008	16.14	0.52	3.0	97.0	0.0	-0.92	0.64	0.59	1.49	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23615	2861	33	0	92	0	0	logfile
✘	6VWK	21419	2022-12-18	2020-02-20	3.3	3.56	—	3.5	0.010	1.30	4.0	0.07	12.71	0.01	2.355	0.98	0.59	0.9	99.1	0.0	-0.35	0.65	0.83	2.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8423	1133	13	0	0	0	0	logfile
✘	6XKT	22224	2022-12-18	2020-06-27	3.75	3.88	—	3.8	0.009	0.99	1.0	0.07	13.78	0.01	1.732	26.25	0.08	16.5	83.1	0.4	-4.20	0.75	0.79	2.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13079	1678	12	0	8	0	0	logfile
✘	6LiD	0904	2022-12-18	2019-12-10	2.7	2.74	—	2.7	0.007	0.99	0.0	0.06	14.33	0.01	1.890	3.70	1.96	4.8	95.1	0.1	-4.84	0.62	0.74	3.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17964	2162	22	0	26	246	0	logfile
✘	6LT4	0967	2022-12-19	2020-01-21	4.5	4.86	—	4.8	0.006	0.92	0.0	0.05	15.21	0.00	1.863	25.41	1.54	7.7	92.3	0.0	-0.98	0.75	0.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	68432	8722	28	0	56	0	0	logfile
✔	6U5B	20643	2022-12-19	2019-08-27	3.5	3.46	—	3.4	0.005	0.95	0.0	0.06	10.09	0.01	2.206	5.76	0.17	8.9	91.1	0.0	-5.11	0.63	0.81	2.95	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	103392	13608	60	0	0	0	0	logfile
✘	6SL5	10236	2022-12-22	2019-08-18	2.84	2.97	2.83	3.0	0.026	2.96	9.0	0.14	20.93	0.02	1.187	20.83	0.73	7.3	92.0	0.7	-3.12	0.71	0.77	2.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	43789	3744	36	0	292	0	0	logfile
✘	6V4D	21040	2022-12-18	2019-11-27	3.8	4.13	—	4.1	0.007	0.90	0.0	0.06	13.63	0.01	1.752	21.75	1.35	7.0	93.0	0.0	-3.84	0.49	0.80	2.10	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3095	422	1	0	0	0	0	logfile
✘	6TU4	10587	2022-12-18	2020-01-02	2.6	2.70	2.54	2.7	0.003	0.65	0.0	0.05	14.32	0.00	1.215	3.51	3.10	1.5	98.5	0.0	-1.72	0.66	0.87	4.94	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15690	1860	15	0	15	140	0	logfile
✘	6PW6	20500	2022-12-18	2019-07-22	4.5	4.56	4.36	4.5	0.021	1.78	0.0	0.11	10.80	0.01	2.200	1.86	0.56	2.7	97.2	0.2	0.50	0.74	0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15942	1842	45	0	108	0	0	logfile
✘	6UTF	20877	2022-12-21	2019-10-29	3.4	4.04	3.76	4.0	0.009	1.28	0.0	0.07	10.41	0.01	2.036	7.47	0.70	5.7	93.9	0.5	-3.27	0.75	0.77	1.47	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	46494	6013	28	0	0	0	0	logfile
✘	6VoY	21301	2022-12-18	2020-02-01	3.7	4.09	—	4.0	0.013	1.52	30.0	0.10	24.39	0.01	1.583	35.15	0.46	2.4	97.6	0.0	-6.32	0.69	0.82	2.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17556	1724	16	180	6	0	0	logfile
✘	7C2K	30275	2022-12-18	2020-05-07	2.93	3.24	3.00	3.1	0.007	0.67	0.0	0.04	13.79	0.00	2.256	7.24	0.00	4.5	95.5	0.0	-2.91	0.78	0.89	4.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10692	1256	7	31	3	0	0	logfile
✘	6TRC	10558	2022-12-19	2019-12-18	2.98	3.06	—	3.1	0.010	1.16	0.0	0.07	19.32	0.02	1.220	9.53	1.42	7.9	92.1	0.0	-3.92	0.71	0.79	3.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	75591	6849	99	0	402	651	0	logfile
✘	7JPW	22425	2022-12-18	2020-08-10	3.2	3.29	—	3.2	0.015	1.06	0.0	0.06	18.76	0.01	2.068	16.08	11.04	9.6	90.3	0.1	-4.54	0.69	0.85	2.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18583	2257	4	0	12	0	0	logfile

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