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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 6VFi | 21173 | 2022-12-19 | 2020-01-05 | 4.54 | 4.63 | 4.54 | 4.5 | 0.018 | 1.47 | 0.0 | 0.09 | 10.93 | 0.01 | 2.449 | 0.53 | 0.00 | 1.3 | 98.7 | 0.0 | 1.21 | 0.74 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 60925 | 7875 | 50 | 0 | 0 | 0 | 0 | logfile |
✔ | 6W1Z | 21519 | 2022-12-22 | 2020-03-04 | 2.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 48536 | 6156 | 27 | 0 | 36 | 0 | 0 | logfile |
✘ | 6UD3 | 20731 | 2022-12-18 | 2019-09-18 | 3.5 | 4.06 | 3.46 | 3.8 | 0.018 | 1.60 | 0.0 | 0.11 | 11.84 | 0.01 | 2.293 | 7.52 | 0.00 | 4.6 | 95.4 | 0.0 | -1.90 | 0.79 | 0.78 | 1.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 14346 | 1765 | 10 | 0 | 6 | 0 | 0 | logfile |
✘ | 6YMX | 10847 | 2022-12-22 | 2020-04-10 | 3.17 | 3.73 | 3.27 | 3.6 | 0.010 | 1.11 | 0.0 | 0.06 | 15.99 | 0.01 | 1.201 | 7.02 | 0.39 | 6.1 | 93.9 | 0.1 | -5.84 | 0.76 | 0.85 | 2.83 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 47034 | 5759 | 47 | 0 | 38 | 0 | 0 | logfile |
✘ | 7AQC | 11862 | 2022-12-19 | 2020-10-21 | 2.99 | 2.20 | — | 2.5 | 0.004 | 0.83 | 0.0 | 0.05 | 16.62 | 0.01 | 1.862 | 5.15 | 0.13 | 5.4 | 94.6 | 0.0 | -1.91 | 0.83 | 0.80 | 2.39 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 95378 | 3752 | 34 | 3077 | 0 | 0 | 0 | logfile |
✘ | 6ZP7 | 11337 | 2022-12-18 | 2020-07-08 | 3.3 | 4.01 | 3.43 | 3.7 | 0.012 | 0.83 | 0.0 | 0.16 | 13.52 | 0.01 | 0.008 | 16.14 | 0.52 | 3.0 | 97.0 | 0.0 | -0.92 | 0.64 | 0.59 | 1.49 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23615 | 2861 | 33 | 0 | 92 | 0 | 0 | logfile |
✘ | 6VWK | 21419 | 2022-12-18 | 2020-02-20 | 3.3 | 3.56 | — | 3.5 | 0.010 | 1.30 | 4.0 | 0.07 | 12.71 | 0.01 | 2.355 | 0.98 | 0.59 | 0.9 | 99.1 | 0.0 | -0.35 | 0.65 | 0.83 | 2.71 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8423 | 1133 | 13 | 0 | 0 | 0 | 0 | logfile |
✘ | 6XKT | 22224 | 2022-12-18 | 2020-06-27 | 3.75 | 3.88 | — | 3.8 | 0.009 | 0.99 | 1.0 | 0.07 | 13.78 | 0.01 | 1.732 | 26.25 | 0.08 | 16.5 | 83.1 | 0.4 | -4.20 | 0.75 | 0.79 | 2.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13079 | 1678 | 12 | 0 | 8 | 0 | 0 | logfile |
✘ | 6LiD | 0904 | 2022-12-18 | 2019-12-10 | 2.7 | 2.74 | — | 2.7 | 0.007 | 0.99 | 0.0 | 0.06 | 14.33 | 0.01 | 1.890 | 3.70 | 1.96 | 4.8 | 95.1 | 0.1 | -4.84 | 0.62 | 0.74 | 3.13 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17964 | 2162 | 22 | 0 | 26 | 246 | 0 | logfile |
✘ | 6LT4 | 0967 | 2022-12-19 | 2020-01-21 | 4.5 | 4.86 | — | 4.8 | 0.006 | 0.92 | 0.0 | 0.05 | 15.21 | 0.00 | 1.863 | 25.41 | 1.54 | 7.7 | 92.3 | 0.0 | -0.98 | 0.75 | 0.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 68432 | 8722 | 28 | 0 | 56 | 0 | 0 | logfile |
✔ | 6U5B | 20643 | 2022-12-19 | 2019-08-27 | 3.5 | 3.46 | — | 3.4 | 0.005 | 0.95 | 0.0 | 0.06 | 10.09 | 0.01 | 2.206 | 5.76 | 0.17 | 8.9 | 91.1 | 0.0 | -5.11 | 0.63 | 0.81 | 2.95 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 103392 | 13608 | 60 | 0 | 0 | 0 | 0 | logfile |
✘ | 6SL5 | 10236 | 2022-12-22 | 2019-08-18 | 2.84 | 2.97 | 2.83 | 3.0 | 0.026 | 2.96 | 9.0 | 0.14 | 20.93 | 0.02 | 1.187 | 20.83 | 0.73 | 7.3 | 92.0 | 0.7 | -3.12 | 0.71 | 0.77 | 2.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 43789 | 3744 | 36 | 0 | 292 | 0 | 0 | logfile |
✘ | 6V4D | 21040 | 2022-12-18 | 2019-11-27 | 3.8 | 4.13 | — | 4.1 | 0.007 | 0.90 | 0.0 | 0.06 | 13.63 | 0.01 | 1.752 | 21.75 | 1.35 | 7.0 | 93.0 | 0.0 | -3.84 | 0.49 | 0.80 | 2.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3095 | 422 | 1 | 0 | 0 | 0 | 0 | logfile |
✘ | 6TU4 | 10587 | 2022-12-18 | 2020-01-02 | 2.6 | 2.70 | 2.54 | 2.7 | 0.003 | 0.65 | 0.0 | 0.05 | 14.32 | 0.00 | 1.215 | 3.51 | 3.10 | 1.5 | 98.5 | 0.0 | -1.72 | 0.66 | 0.87 | 4.94 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15690 | 1860 | 15 | 0 | 15 | 140 | 0 | logfile |
✘ | 6PW6 | 20500 | 2022-12-18 | 2019-07-22 | 4.5 | 4.56 | 4.36 | 4.5 | 0.021 | 1.78 | 0.0 | 0.11 | 10.80 | 0.01 | 2.200 | 1.86 | 0.56 | 2.7 | 97.2 | 0.2 | 0.50 | 0.74 | 0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15942 | 1842 | 45 | 0 | 108 | 0 | 0 | logfile |
✘ | 6UTF | 20877 | 2022-12-21 | 2019-10-29 | 3.4 | 4.04 | 3.76 | 4.0 | 0.009 | 1.28 | 0.0 | 0.07 | 10.41 | 0.01 | 2.036 | 7.47 | 0.70 | 5.7 | 93.9 | 0.5 | -3.27 | 0.75 | 0.77 | 1.47 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 46494 | 6013 | 28 | 0 | 0 | 0 | 0 | logfile |
✘ | 6VoY | 21301 | 2022-12-18 | 2020-02-01 | 3.7 | 4.09 | — | 4.0 | 0.013 | 1.52 | 30.0 | 0.10 | 24.39 | 0.01 | 1.583 | 35.15 | 0.46 | 2.4 | 97.6 | 0.0 | -6.32 | 0.69 | 0.82 | 2.12 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17556 | 1724 | 16 | 180 | 6 | 0 | 0 | logfile |
✘ | 7C2K | 30275 | 2022-12-18 | 2020-05-07 | 2.93 | 3.24 | 3.00 | 3.1 | 0.007 | 0.67 | 0.0 | 0.04 | 13.79 | 0.00 | 2.256 | 7.24 | 0.00 | 4.5 | 95.5 | 0.0 | -2.91 | 0.78 | 0.89 | 4.22 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10692 | 1256 | 7 | 31 | 3 | 0 | 0 | logfile |
✘ | 6TRC | 10558 | 2022-12-19 | 2019-12-18 | 2.98 | 3.06 | — | 3.1 | 0.010 | 1.16 | 0.0 | 0.07 | 19.32 | 0.02 | 1.220 | 9.53 | 1.42 | 7.9 | 92.1 | 0.0 | -3.92 | 0.71 | 0.79 | 3.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 75591 | 6849 | 99 | 0 | 402 | 651 | 0 | logfile |
✘ | 7JPW | 22425 | 2022-12-18 | 2020-08-10 | 3.2 | 3.29 | — | 3.2 | 0.015 | 1.06 | 0.0 | 0.06 | 18.76 | 0.01 | 2.068 | 16.08 | 11.04 | 9.6 | 90.3 | 0.1 | -4.54 | 0.69 | 0.85 | 2.80 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18583 | 2257 | 4 | 0 | 12 | 0 | 0 | logfile |